Site of Covalent Attachment of A-Scorpion Toxin Derivatives in Domain I of the Sodium Channel a Subunit FRANCISCO J
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Venom Gland Transcriptomic and Proteomic
toxins Article Venom Gland Transcriptomic and Proteomic Analyses of the Enigmatic Scorpion Superstitionia donensis (Scorpiones: Superstitioniidae), with Insights on the Evolution of Its Venom Components Carlos E. Santibáñez-López 1, Jimena I. Cid-Uribe 1, Cesar V. F. Batista 2, Ernesto Ortiz 1,* and Lourival D. Possani 1,* 1 Departamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Apartado Postal 510-3, Cuernavaca, Morelos 62210, Mexico; [email protected] (C.E.S.-L.); [email protected] (J.I.C.-U.) 2 Laboratorio Universitario de Proteómica, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Apartado Postal 510-3, Cuernavaca, Morelos 62210, Mexico; [email protected] * Correspondence: [email protected] (E.O.); [email protected] (L.D.P.); Tel.: +52-777-329-1647 (E.O.); +52-777-317-1209 (L.D.P.) Academic Editor: Richard J. Lewis Received: 25 October 2016; Accepted: 1 December 2016; Published: 9 December 2016 Abstract: Venom gland transcriptomic and proteomic analyses have improved our knowledge on the diversity of the heterogeneous components present in scorpion venoms. However, most of these studies have focused on species from the family Buthidae. To gain insights into the molecular diversity of the venom components of scorpions belonging to the family Superstitioniidae, one of the neglected scorpion families, we performed a transcriptomic and proteomic analyses for the species Superstitionia donensis. The total mRNA extracted from the venom glands of two specimens was subjected to massive sequencing by the Illumina protocol, and a total of 219,073 transcripts were generated. -
Aspartic Acid Isomerization Characterized by High Definition
toxins Article Aspartic Acid Isomerization Characterized by High Definition Mass Spectrometry Significantly Alters the Bioactivity of a Novel Toxin from Poecilotheria Stephen R. Johnson 1,2,* and Hillary G. Rikli 3 1 Carbon Dynamics Institute LLC, Sherman, IL 62684, USA 2 Chemistry Department, University of Illinois Springfield, Springfield, IL 62703, USA 3 College of Liberal Arts & Sciences, University of Illinois Springfield, Springfield, IL 62703, USA; [email protected] * Correspondence: [email protected] Received: 2 March 2020; Accepted: 23 March 2020; Published: 25 March 2020 Abstract: Research in toxinology has created a pharmacological paradox. With an estimated 220,000 venomous animals worldwide, the study of peptidyl toxins provides a vast number of effector molecules. However, due to the complexity of the protein-protein interactions, there are fewer than ten venom-derived molecules on the market. Structural characterization and identification of post-translational modifications are essential to develop biological lead structures into pharmaceuticals. Utilizing advancements in mass spectrometry, we have created a high definition approach that fuses conventional high-resolution MS-MS with ion mobility spectrometry (HDMSE) to elucidate these primary structure characteristics. We investigated venom from ten species of “tiger” spider (Genus: Poecilotheria) and discovered they contain isobaric conformers originating from non-enzymatic Asp isomerization. One conformer pair conserved in five of ten species examined, denominated PcaTX-1a and PcaTX-1b, was found to be a 36-residue peptide with a cysteine knot, an amidated C-terminus, and isoAsp33Asp substitution. Although the isomerization of Asp has been implicated in many pathologies, this is the first characterization of Asp isomerization in a toxin and demonstrates the isomerized product’s diminished physiological effects. -
Scorpion Toxin Peptide Scaffolds
Toxins 2013, 5, 2456-2487; doi:10.3390/toxins5122456 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Article Evolution Stings: The Origin and Diversification of Scorpion Toxin Peptide Scaffolds Kartik Sunagar 1,2,†, Eivind A. B. Undheim 3,4,†, Angelo H. C. Chan 3, Ivan Koludarov 3,4, Sergio A. Muñoz-Gómez 5, Agostinho Antunes 1,2 and Bryan G. Fry 3,4,* 1 CIMAR/CIIMAR, Centro Interdisciplinar de Investigação Marinha e Ambiental, Universidade do Porto, Rua dos Bragas, 177, 4050-123 Porto, Portugal; E-Mails: [email protected] (K.S.); [email protected] (A.A.) 2 Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, 4169-007, Porto, Portugal 3 Venom Evolution Lab, School of Biological Sciences, The University of Queensland, St. Lucia, Queensland 4072, Australia; E-Mails: [email protected] (E.A.B.U.); [email protected] (A.H.C.C.); [email protected] (I.K.) 4 Institute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia 5 Department of Biochemistry and Molecular Biology, Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, Nova Scotia, Canada; E-Mail: [email protected] † These authors contributed equally to this work. * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +61-400-193-182. Received: 21 November 2013; in revised form: 9 December 2013 / Accepted: 9 December 2013 / Published: 13 December 2013 Abstract: The episodic nature of natural selection and the accumulation of extreme sequence divergence in venom-encoding genes over long periods of evolutionary time can obscure the signature of positive Darwinian selection. -
Expression, Delivery and Function of Insecticidal Proteins Expressed by Recombinant Baculoviruses
Viruses 2015, 7, 422-455; doi:10.3390/v7010422 OPEN ACCESS viruses ISSN 1999-4915 www.mdpi.com/journal/viruses Review Expression, Delivery and Function of Insecticidal Proteins Expressed by Recombinant Baculoviruses Jeremy A. Kroemer 1,2, Bryony C. Bonning 1 and Robert L. Harrison 3,* 1 Department of Entomology, Iowa State University, Ames, IA 50011, USA; E-Mails: [email protected] (J.A.K.); [email protected] (B.C.B.) 2 Current location and contact information: Monsanto Company, 700 Chesterfield Parkway West, Chesterfield, MO 63017, USA 3 USDA-ARS Beltsville Agricultural Research Center, Invasive Insect Biocontrol & Behavior Laboratory, 10300 Baltimore Ave, Beltsville, MD 20705, USA * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-301-504-5249; Fax: +1-301-504-5104. Academic Editor: John Burand and Madoka Nakai Received: 25 November 2014 / Accepted: 15 January 2015 / Published: 21 January 2015 Abstract: Since the development of methods for inserting and expressing genes in baculoviruses, a line of research has focused on developing recombinant baculoviruses that express insecticidal peptides and proteins. These recombinant viruses have been engineered with the goal of improving their pesticidal potential by shortening the time required for infection to kill or incapacitate insect pests and reducing the quantity of crop damage as a consequence. A wide variety of neurotoxic peptides, proteins that regulate insect physiology, degradative enzymes, and other potentially insecticidal proteins have been evaluated for their capacity to reduce the survival time of baculovirus-infected lepidopteran host larvae. Researchers have investigated the factors involved in the efficient expression and delivery of baculovirus-encoded insecticidal peptides and proteins, with much effort dedicated to identifying ideal promoters for driving transcription and signal peptides that mediate secretion of the expressed target protein. -
Marine Drugs ISSN 1660-3397 © 2006 by MDPI
Mar. Drugs 2006, 4, 70-81 Marine Drugs ISSN 1660-3397 © 2006 by MDPI www.mdpi.org/marinedrugs Special Issue on “Marine Drugs and Ion Channels” Edited by Hugo Arias Review Cnidarian Toxins Acting on Voltage-Gated Ion Channels Shanta M. Messerli and Robert M. Greenberg * Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA Tel: 508 289-7981. E-mail: [email protected] * Author to whom correspondence should be addressed. Received: 21 February 2006 / Accepted: 27 February 2006 / Published: 6 April 2006 Abstract: Voltage-gated ion channels generate electrical activity in excitable cells. As such, they are essential components of neuromuscular and neuronal systems, and are targeted by toxins from a wide variety of phyla, including the cnidarians. Here, we review cnidarian toxins known to target voltage-gated ion channels, the specific channel types targeted, and, where known, the sites of action of cnidarian toxins on different channels. Keywords: Cnidaria; ion channels; toxin; sodium channel; potassium channel. Abbreviations: KV channel, voltage-gated potassium channel; NaV, voltage-gated sodium channel; CaV, voltage-gated calcium channel; ApA, Anthopleurin A; ApB, Anthopleurin B; ATX II, Anemone sulcata toxin II; Bg II, Bunodosoma granulifera toxin II; Sh I, peptide neurotoxin I from Stichodactyla helianthus; RP II, polypeptide toxin II from Radianthus paumotensis; RP III, polypeptide toxin III from Radianthus paumotensis; RTX I, neurotoxin I from Radianthus macrodactylus; PaTX, toxin from Paracicyonis actinostoloides; Er I, peptide toxin I from Entacmaea ramsayi; Da I, peptide toxin I from Dofleinia armata; ATX III, Anemone sulcata toxin III; ShK, potassium channel toxin from Stichodactyla helianthus; BgK, potassium channel toxin from Bunodosoma granulifera; AsKS, kalciceptine from Anemonia sulcata; HmK, potassium channel toxin from Heteractis magnifica; AeK, potassium channel toxin from Actinia equina; AsKC 1-3, kalcicludines 1-3 from Anemonia sulcata; BDS-I, BDS-II, blood depressing toxins I and II Mar. -
Supporting Online Material
Supplementary Material for Phylogenomics of scorpions reveal a co-diversification of scorpion mammalian predators and mammal-specific sodium channel toxins Carlos E. Santibáñez-López, Shlomi Aharon, Jesús A. Ballesteros, Guilherme Gainett, Caitlin M. Baker, Edmundo González-Santillán, Mark S. Harvey, Mohamed K. Hassan, Ali Hussin Abu-Almaaty, Shorouk Mohamed Aldeyarbi, Lionel Monod, Andrés Ojanguren-Affilastro, Robert J. Raven, Ricardo Pinto-da- Rocha, Yoram Zvik, Efrat Gavish-Regev, Prashant P. Sharma Carlos E. Santibáñez-López [email protected] This PDF file includes: Supplementary text Supplementary References Supplementary Figures S1 to S17 SUPPLEMENTARY TEXT Taxon sampling Sequences from 100 species of Scorpiones were used for this study, from which 55 were sequenced previously by our team and 42 were newly sequenced for this study. In addition, 20 sequences of outgroup species representing seven chelicerate orders were included totaling 120 species. A full list of sequences with taxonomic information, sources of previously published sequenced, and GenBank accession numbers are provided in Supplementary Tables S1-3. RNA extraction and sequencing All specimens were either collected, or from captive bred colonies (Table S2). All scorpions were dissected into RNAlater solution (Ambion, Foster City, CA, USA). From all specimens, the brain, legs and telson were dissected for sequencing as in our previous publications (Santibáñez-López et al. 2019). Total RNA extraction, mRNA isolation and cDNA library construction were performed as in our previous protocols (Sharma et al. 2014; 2015; Santibáñez-López et al. 2018a; 2018b). RNA was extracted using the Trizol Trireagent system (Ambion Life Technologies, Waltham, MA, USA) Library preparation and stranded mRNA sequencing followed protocols from the Biotechnology Center at the University of Wisconsin-Madison or constructed in the Apollo 324 automated system using the PrepX mRNA kit (IntegenX, Pleasanton, CA, USA), with samples marked with unique indices to enable multiplexing. -
Engineering Insect-Resistant Plants by Transgenic Expression of an Insecticidal Spider-Venom Peptide
Engineering Insect-Resistant Plants by Transgenic Expression of an Insecticidal Spider-Venom Peptide Md. Shohidul Alam Master of Science in Agricultural Chemistry A thesis submitted for the degree of Doctor of Philosophy at The University of Queensland in 2014 Institute for Molecular Bioscience Abstract The insecticidal spider-venom peptide ω-hexatoxin-Hv1a (Hv1a) from the Australian Blue Mountains funnel-web spider Hadronyche versuta is one of the most potent insect-specific neurotoxins isolated to date. Hv1a blocks voltage-gated calcium channels in the insect central nervous system, a mechanism quite distinct from existing chemical insecticides. It induces a slow-onset paralysis that precedes death in a taxonomically wide range of insects. Hv1a's broad spectrum of target insects, novel mode of action, and absence of toxicity to vertebrates makes the Hv1a gene an attractive tool for generating insect- resistant transgenic crops. The oral activity of Hv1a can be enhanced by coupling it to the plant lectin Galanthus nivalis agglutinin (GNA) or with the minor capsid protein of pea enation mosaic virus (CP). Recombinant fusions of Hv1a with GNA were produced using the Pichia pastoris expression system to study the intrinsic insecticidal activity of Hv1a-GNA and GNA-Hv1a fusion proteins. By using injection bioassays with houseflies, we found that the intrinsic insecticidal activity of Hv1a was maintained when it was fused to GNA. Moreover, feeding bioassays with diamondback moth larvae revealed that fusion of Hv1a to GNA, in either orientation, enhances its oral insecticidal activity. In order to generate transgenic plants expressing Hv1a alone or fused to GNA or CP, transformation vectors were constructed by ligating synthesised genes in the pAOV binary vector with the constitutive Cauliflower Mosaic Virus 35S promoter (35S) or the phloem tissue-specific Arabidopsis thaliana SUCROSE TRANSPORTER 2 (SUC2) promoter. -
Functional Prediction of Bioactive Toxins in Scorpion
FUNCTIONAL PREDICTION OF BIOACTIVE TOXINS IN SCORPION VENOM THROUGH BIOINFORMATICS TAN THIAM JOO , PAUL ( B. Appl. Sc. (Hons.), NUS ) A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF BIOCHEMISTRY NATIONAL UNIVERSITY OF SINGAPORE 2005 Functional prediction of bioactive toxins in scorpion venom through bioinformatics Acknowledgements Throughout my Ph.D. candidature, I have been accompanied and supported by friends and family members to complete this thesis. So it is with deep gratitude that I express my heartfelt appreciation to the following: Almighty God who has blessed me with gifts and talents to share with others. Professor Vladimir Brusic, my supervisor and mentor, whom I owe lots of gratitude. Through his guidance and advice, I have improved on my writing skill and learnt to be an independent researcher. It is also through his faith in me that I have realised my potential. Professor Shoba Ranganathan, my co-supervisor, for her valuable advices and support which motivated me to pursue Ph.D. Seng Hong, Fahad, ZongHong, Anitha and XuanLinh for their computing assistance in my research. Asif, Heiny, Stephanie and Wilson for their critique of my dissertation and companionship during lunch and at I2R. Judice, Chris, Yew Kwang and Lynn for their listening ears and encouragement during difficult times. Bernett, Lesheng, Vivek, Victor and Justin, my fellow post-graduate friends for their comradeship. My mother, Madam Soong Kim Song, for her perseverance in the face of adversity. My family especially my eldest sister, Anna, for their love, encouragement, prayers and support. My deepest and sincere gratitude, Paul Tan Thiam Joo November, 2005 I Functional prediction of bioactive toxins in scorpion venom through bioinformatics Table of Contents Acknowledgements............................................................................................................. -
Wo 2007/038619 A2
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (43) International Publication Date PCT (10) International Publication Number 5 April 2007 (05.04.2007) WO 2007/038619 A2 (51) International Patent Classification: (74) Agents: WONG, Karen, K. et al.; WILSON SONSINI C40B 40/10 (2006.01) GOODRICH & ROSATI, 650 Page Mill Road, Palo Alto, CA 94304-1050 (US). (21) International Application Number: PCT/US2006/037713 (81) Designated States (unless otherwise indicated, for every kind of national protection available): AE, AG, AL, AM, (22) International Filing Date: AT,AU, AZ, BA, BB, BG, BR, BW, BY, BZ, CA, CH, CN, 27 September 2006 (27.09.2006) CO, CR, CU, CZ, DE, DK, DM, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, HN, HR, HU, ID, IL, IN, IS, JP, (25) Filing Language: English KE, KG, KM, KN, KP, KR, KZ, LA, LC, LK, LR, LS, LT, LU, LV,LY,MA, MD, MG, MK, MN, MW, MX, MY, MZ, (26) Publication Language: English NA, NG, NI, NO, NZ, OM, PG, PH, PL, PT, RO, RS, RU, SC, SD, SE, SG, SK, SL, SM, SV, SY, TJ, TM, TN, TR, (30) Priority Data: TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW 60/721,270 27 September 2005 (27.09.2005) US 60/721,188 27 September 2005 (27.09.2005) US (84) Designated States (unless otherwise indicated, for every 60/743,622 21 March 2006 (2 1.03.2006) US kind of regional protection available): ARIPO (BW, GH, GM, KE, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, ZM, (71) Applicant (for all designated States except US): AMU- ZW), Eurasian (AM, AZ, BY, KG, KZ, MD, RU, TJ, TM), NIX, INC. -
Animal Toxins: How Is Complexity Represented in Databases?
Toxins 2010, 2, 262-282; doi:10.3390/toxins2020261 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Review Animal Toxins: How is Complexity Represented in Databases? Florence Jungo 1,*, Anne Estreicher 1, Amos Bairoch 2, Lydie Bougueleret 1 and Ioannis Xenarios 1,3 1 Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel-Servet, 1211 Genève 4, Switzerland; E-Mails: [email protected] (A.E.); [email protected] (L.B.); [email protected] (I.X.) 2 Department of Structural Biology and Bioinformatics, Faculty of Medicine, University of Geneva, Switzerland; E-Mail: [email protected] (A.B.) 3 Swiss Institute of Bioinformatics, Vital-IT Group, 1015 Lausanne, Switzerland * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +41-22-379-5050; Fax: +41-22-379-5858. Received: 22 January 2010; in revised form: 10 February 2010 / Accepted: 11 February 2010 / Published: 21 February 2010 Abstract: Peptide toxins synthesized by venomous animals have been extensively studied in the last decades. To be useful to the scientific community, this knowledge has been stored, annotated and made easy to retrieve by several databases. The aim of this article is to present what type of information users can access from each database. ArachnoServer and ConoServer focus on spider toxins and cone snail toxins, respectively. UniProtKB, a generalist protein knowledgebase, has an animal toxin-dedicated annotation program that includes toxins from all venomous animals. Finally, the ATDB metadatabase compiles data and annotations from other databases and provides toxin ontology. -
Downloaded from the Molecular Mod- of Mytimacin 5 Has Not Been Reported, but from the Refer- Eling Database (MMDB) [96] and Viewed with the Cn3d Ence Array (Fig
Tarr BMC Res Notes (2016) 9:490 DOI 10.1186/s13104-016-2291-0 BMC Research Notes RESEARCH ARTICLE Open Access Establishing a reference array for the CS‑αβ superfamily of defensive peptides D. Ellen K. Tarr* Abstract Background: “Invertebrate defensins” belong to the cysteine-stabilized alpha-beta (CS-αβ), also known as the scor- pion toxin-like, superfamily. Some other peptides belonging to this superfamily of defensive peptides are indistin- guishable from “defensins,” but have been assigned other names, making it unclear what, if any, criteria must be met to qualify as an “invertebrate defensin.” In addition, there are other groups of defensins in invertebrates and verte- brates that are considered to be evolutionarily unrelated to those in the CS-αβ superfamily. This complicates analyses and discussions of this peptide group. This paper investigates the criteria for classifying a peptide as an invertebrate defensin, suggests a reference cysteine array that may be helpful in discussing peptides in this superfamily, and pro- poses that the superfamily (rather than the name “defensin”) is the appropriate context for studying the evolution of invertebrate defensins with the CS-αβ fold. Methods: CS-αβ superfamily sequences were identified from previous literature and BLAST searches of public databases. Sequences were retrieved from databases, and the relevant motifs were identified and used to create a conceptual alignment to a ten-cysteine reference array. Amino acid sequences were aligned in MEGA6 with manual adjustments to ensure accurate alignment of cysteines. Phylogenetic analyses were performed in MEGA6 (maximum likelihood) and MrBayes (Bayesian). Results: Across invertebrate taxa, the term “defensin” is not consistently applied based on number of cysteines, cysteine spacing pattern, spectrum of antimicrobial activity, or phylogenetic relationship. -
Therapeutic Potential of Venom Peptides
REVIEWS THERAPEUTIC POTENTIAL OF VENOM PEPTIDES Richard J. Lewis*‡ and Maria L. Garcia§ Venomous animals have evolved a vast array of peptide toxins for prey capture and defence. These peptides are directed against a wide variety of pharmacological targets, making them an invaluable source of ligands for studying the properties of these targets in different experimental paradigms. A number of these peptides have been used in vivo for proof-of-concept studies, with several having undergone preclinical or clinical development for the treatment of pain, diabetes, multiple sclerosis and cardiovascular diseases. Here we survey the pharmacology of venom peptides and assess their therapeutic prospects. Toxins have evolved in plants, animals and microbes well suited to addressing the crucial issues of potency DINOFLAGELLATES Unicellular algae that produce multiple times as part of defensive and/or prey capture and stability (FIG. 2).It is this evolved biodiversity that a range of toxins that enter the strategies. Non-peptide toxins are typically orally active makes venom peptides a unique source of leads and food chain during blooms. and include many food-borne toxins of DINOFLAGELLATE structural templates from which new therapeutic origin, such as the ciguatoxins and brevetoxins which agents might be developed. ENVENOMATION APPARATUS 1 Highly specialized glands activate voltage-sensitive sodium channels , the diar- In this review, peptides found in the venom of cone secreting peptides injected via rhoetic shellfish poisons which inhibit protein phos- snails, spiders, scorpions, snakes, the Gila monster lizard hollow teeth, stings, harpoons phatases2,3,and the paralytic shellfish poisons (saxitoxins) and sea anemone (FIG. 1) are discussed in relation to their and nematocyst tubules.