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A Classification of Living and Fossil Genera of Decapod Crustaceans
RAFFLES BULLETIN OF ZOOLOGY 2009 Supplement No. 21: 1–109 Date of Publication: 15 Sep.2009 © National University of Singapore A CLASSIFICATION OF LIVING AND FOSSIL GENERA OF DECAPOD CRUSTACEANS Sammy De Grave1, N. Dean Pentcheff 2, Shane T. Ahyong3, Tin-Yam Chan4, Keith A. Crandall5, Peter C. Dworschak6, Darryl L. Felder7, Rodney M. Feldmann8, Charles H. J. M. Fransen9, Laura Y. D. Goulding1, Rafael Lemaitre10, Martyn E. Y. Low11, Joel W. Martin2, Peter K. L. Ng11, Carrie E. Schweitzer12, S. H. Tan11, Dale Tshudy13, Regina Wetzer2 1Oxford University Museum of Natural History, Parks Road, Oxford, OX1 3PW, United Kingdom [email protected] [email protected] 2Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA 90007 United States of America [email protected] [email protected] [email protected] 3Marine Biodiversity and Biosecurity, NIWA, Private Bag 14901, Kilbirnie Wellington, New Zealand [email protected] 4Institute of Marine Biology, National Taiwan Ocean University, Keelung 20224, Taiwan, Republic of China [email protected] 5Department of Biology and Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602 United States of America [email protected] 6Dritte Zoologische Abteilung, Naturhistorisches Museum, Wien, Austria [email protected] 7Department of Biology, University of Louisiana, Lafayette, LA 70504 United States of America [email protected] 8Department of Geology, Kent State University, Kent, OH 44242 United States of America [email protected] 9Nationaal Natuurhistorisch Museum, P. O. Box 9517, 2300 RA Leiden, The Netherlands [email protected] 10Invertebrate Zoology, Smithsonian Institution, National Museum of Natural History, 10th and Constitution Avenue, Washington, DC 20560 United States of America [email protected] 11Department of Biological Sciences, National University of Singapore, Science Drive 4, Singapore 117543 [email protected] [email protected] [email protected] 12Department of Geology, Kent State University Stark Campus, 6000 Frank Ave. -
Anthopleura and the Phylogeny of Actinioidea (Cnidaria: Anthozoa: Actiniaria)
Org Divers Evol (2017) 17:545–564 DOI 10.1007/s13127-017-0326-6 ORIGINAL ARTICLE Anthopleura and the phylogeny of Actinioidea (Cnidaria: Anthozoa: Actiniaria) M. Daly1 & L. M. Crowley2 & P. Larson1 & E. Rodríguez2 & E. Heestand Saucier1,3 & D. G. Fautin4 Received: 29 November 2016 /Accepted: 2 March 2017 /Published online: 27 April 2017 # Gesellschaft für Biologische Systematik 2017 Abstract Members of the sea anemone genus Anthopleura by the discovery that acrorhagi and verrucae are are familiar constituents of rocky intertidal communities. pleisiomorphic for the subset of Actinioidea studied. Despite its familiarity and the number of studies that use its members to understand ecological or biological phe- Keywords Anthopleura . Actinioidea . Cnidaria . Verrucae . nomena, the diversity and phylogeny of this group are poor- Acrorhagi . Pseudoacrorhagi . Atomized coding ly understood. Many of the taxonomic and phylogenetic problems stem from problems with the documentation and interpretation of acrorhagi and verrucae, the two features Anthopleura Duchassaing de Fonbressin and Michelotti, 1860 that are used to recognize members of Anthopleura.These (Cnidaria: Anthozoa: Actiniaria: Actiniidae) is one of the most anatomical features have a broad distribution within the familiar and well-known genera of sea anemones. Its members superfamily Actinioidea, and their occurrence and exclu- are found in both temperate and tropical rocky intertidal hab- sivity are not clear. We use DNA sequences from the nu- itats and are abundant and species-rich when present (e.g., cleus and mitochondrion and cladistic analysis of verrucae Stephenson 1935; Stephenson and Stephenson 1972; and acrorhagi to test the monophyly of Anthopleura and to England 1992; Pearse and Francis 2000). -
The Anemonia Viridis Venom: Coupling Biochemical Purification
marine drugs Review The Anemonia viridis Venom: Coupling Biochemical Purification and RNA-Seq for Translational Research Aldo Nicosia 1,*,† , Alexander Mikov 2,†, Matteo Cammarata 3, Paolo Colombo 4 , Yaroslav Andreev 2,5, Sergey Kozlov 2 and Angela Cuttitta 1,* 1 National Research Council-Institute for the Study of Anthropogenic Impacts and Sustainability in the Marine Environment (IAS-CNR), Laboratory of Molecular Ecology and Biotechnology, Capo Granitola, Via del mare, Campobello di Mazara (TP), 91021 Sicily, Italy 2 Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, GSP-7, ul. Miklukho-Maklaya, 16/10, 117997 Moscow, Russia; [email protected] (A.M.); [email protected] (Y.A.); [email protected] (S.K.) 3 Department of Earth and Marine Sciences, University of Palermo, 90100 Palermo, Italy; [email protected] 4 Istituto di Biomedicina e di Immunologia Molecolare, Consiglio Nazionale delle Ricerche, Via Ugo La Malfa 153, 90146 Palermo, Italy; [email protected] 5 Institute of Molecular Medicine, Ministry of Healthcare of the Russian Federation, Sechenov First Moscow State Medical University, 119991 Moscow, Russia * Correspondence: [email protected] (A.N.); [email protected] (A.C.); Tel.: +39-0924-40600 (A.N. & A.C.) † These authors have made equal contribution. Received: 29 September 2018; Accepted: 24 October 2018; Published: 25 October 2018 Abstract: Blue biotechnologies implement marine bio-resources for addressing practical concerns. The isolation of biologically active molecules from marine animals is one of the main ways this field develops. Strikingly, cnidaria are considered as sustainable resources for this purpose, as they possess unique cells for attack and protection, producing an articulated cocktail of bioactive substances. -
Venom Gland Transcriptomic and Proteomic
toxins Article Venom Gland Transcriptomic and Proteomic Analyses of the Enigmatic Scorpion Superstitionia donensis (Scorpiones: Superstitioniidae), with Insights on the Evolution of Its Venom Components Carlos E. Santibáñez-López 1, Jimena I. Cid-Uribe 1, Cesar V. F. Batista 2, Ernesto Ortiz 1,* and Lourival D. Possani 1,* 1 Departamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Apartado Postal 510-3, Cuernavaca, Morelos 62210, Mexico; [email protected] (C.E.S.-L.); [email protected] (J.I.C.-U.) 2 Laboratorio Universitario de Proteómica, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Apartado Postal 510-3, Cuernavaca, Morelos 62210, Mexico; [email protected] * Correspondence: [email protected] (E.O.); [email protected] (L.D.P.); Tel.: +52-777-329-1647 (E.O.); +52-777-317-1209 (L.D.P.) Academic Editor: Richard J. Lewis Received: 25 October 2016; Accepted: 1 December 2016; Published: 9 December 2016 Abstract: Venom gland transcriptomic and proteomic analyses have improved our knowledge on the diversity of the heterogeneous components present in scorpion venoms. However, most of these studies have focused on species from the family Buthidae. To gain insights into the molecular diversity of the venom components of scorpions belonging to the family Superstitioniidae, one of the neglected scorpion families, we performed a transcriptomic and proteomic analyses for the species Superstitionia donensis. The total mRNA extracted from the venom glands of two specimens was subjected to massive sequencing by the Illumina protocol, and a total of 219,073 transcripts were generated. -
Aspartic Acid Isomerization Characterized by High Definition
toxins Article Aspartic Acid Isomerization Characterized by High Definition Mass Spectrometry Significantly Alters the Bioactivity of a Novel Toxin from Poecilotheria Stephen R. Johnson 1,2,* and Hillary G. Rikli 3 1 Carbon Dynamics Institute LLC, Sherman, IL 62684, USA 2 Chemistry Department, University of Illinois Springfield, Springfield, IL 62703, USA 3 College of Liberal Arts & Sciences, University of Illinois Springfield, Springfield, IL 62703, USA; [email protected] * Correspondence: [email protected] Received: 2 March 2020; Accepted: 23 March 2020; Published: 25 March 2020 Abstract: Research in toxinology has created a pharmacological paradox. With an estimated 220,000 venomous animals worldwide, the study of peptidyl toxins provides a vast number of effector molecules. However, due to the complexity of the protein-protein interactions, there are fewer than ten venom-derived molecules on the market. Structural characterization and identification of post-translational modifications are essential to develop biological lead structures into pharmaceuticals. Utilizing advancements in mass spectrometry, we have created a high definition approach that fuses conventional high-resolution MS-MS with ion mobility spectrometry (HDMSE) to elucidate these primary structure characteristics. We investigated venom from ten species of “tiger” spider (Genus: Poecilotheria) and discovered they contain isobaric conformers originating from non-enzymatic Asp isomerization. One conformer pair conserved in five of ten species examined, denominated PcaTX-1a and PcaTX-1b, was found to be a 36-residue peptide with a cysteine knot, an amidated C-terminus, and isoAsp33Asp substitution. Although the isomerization of Asp has been implicated in many pathologies, this is the first characterization of Asp isomerization in a toxin and demonstrates the isomerized product’s diminished physiological effects. -
Scorpion Toxin Peptide Scaffolds
Toxins 2013, 5, 2456-2487; doi:10.3390/toxins5122456 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Article Evolution Stings: The Origin and Diversification of Scorpion Toxin Peptide Scaffolds Kartik Sunagar 1,2,†, Eivind A. B. Undheim 3,4,†, Angelo H. C. Chan 3, Ivan Koludarov 3,4, Sergio A. Muñoz-Gómez 5, Agostinho Antunes 1,2 and Bryan G. Fry 3,4,* 1 CIMAR/CIIMAR, Centro Interdisciplinar de Investigação Marinha e Ambiental, Universidade do Porto, Rua dos Bragas, 177, 4050-123 Porto, Portugal; E-Mails: [email protected] (K.S.); [email protected] (A.A.) 2 Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, 4169-007, Porto, Portugal 3 Venom Evolution Lab, School of Biological Sciences, The University of Queensland, St. Lucia, Queensland 4072, Australia; E-Mails: [email protected] (E.A.B.U.); [email protected] (A.H.C.C.); [email protected] (I.K.) 4 Institute for Molecular Bioscience, The University of Queensland, St. Lucia, Queensland 4072, Australia 5 Department of Biochemistry and Molecular Biology, Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Halifax, Nova Scotia, Canada; E-Mail: [email protected] † These authors contributed equally to this work. * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +61-400-193-182. Received: 21 November 2013; in revised form: 9 December 2013 / Accepted: 9 December 2013 / Published: 13 December 2013 Abstract: The episodic nature of natural selection and the accumulation of extreme sequence divergence in venom-encoding genes over long periods of evolutionary time can obscure the signature of positive Darwinian selection. -
Expression, Delivery and Function of Insecticidal Proteins Expressed by Recombinant Baculoviruses
Viruses 2015, 7, 422-455; doi:10.3390/v7010422 OPEN ACCESS viruses ISSN 1999-4915 www.mdpi.com/journal/viruses Review Expression, Delivery and Function of Insecticidal Proteins Expressed by Recombinant Baculoviruses Jeremy A. Kroemer 1,2, Bryony C. Bonning 1 and Robert L. Harrison 3,* 1 Department of Entomology, Iowa State University, Ames, IA 50011, USA; E-Mails: [email protected] (J.A.K.); [email protected] (B.C.B.) 2 Current location and contact information: Monsanto Company, 700 Chesterfield Parkway West, Chesterfield, MO 63017, USA 3 USDA-ARS Beltsville Agricultural Research Center, Invasive Insect Biocontrol & Behavior Laboratory, 10300 Baltimore Ave, Beltsville, MD 20705, USA * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-301-504-5249; Fax: +1-301-504-5104. Academic Editor: John Burand and Madoka Nakai Received: 25 November 2014 / Accepted: 15 January 2015 / Published: 21 January 2015 Abstract: Since the development of methods for inserting and expressing genes in baculoviruses, a line of research has focused on developing recombinant baculoviruses that express insecticidal peptides and proteins. These recombinant viruses have been engineered with the goal of improving their pesticidal potential by shortening the time required for infection to kill or incapacitate insect pests and reducing the quantity of crop damage as a consequence. A wide variety of neurotoxic peptides, proteins that regulate insect physiology, degradative enzymes, and other potentially insecticidal proteins have been evaluated for their capacity to reduce the survival time of baculovirus-infected lepidopteran host larvae. Researchers have investigated the factors involved in the efficient expression and delivery of baculovirus-encoded insecticidal peptides and proteins, with much effort dedicated to identifying ideal promoters for driving transcription and signal peptides that mediate secretion of the expressed target protein. -
Zootaxa, Designation of Ancylomenes Gen. Nov., for the 'Periclimenes
Zootaxa 2372: 85–105 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) Designation of Ancylomenes gen. nov., for the ‘Periclimenes aesopius species group’ (Crustacea: Decapoda: Palaemonidae), with the description of a new species and a checklist of congeneric species* J. OKUNO1 & A. J. BRUCE2 1Coastal Branch of Natural History Museum and Institute, Chiba, 123 Yoshio, Katsuura, Chiba 299-5242, Japan. E-mail: [email protected] 2Crustacea Section, Queensland Museum, P. O. Box 3300, South Brisbane, Q4101, Australia. E-mail: [email protected] * In: De Grave, S. & Fransen, C.H.J.M. (2010) Contributions to shrimp taxonomy. Zootaxa, 2372, 1–414. Abstract A new genus of the subfamily Pontoniinae, Ancylomenes gen. nov. is established for the ‘Periclimenes aesopius species group’ of the genus Periclimenes Costa. The new genus is distinguished from other genera of Pontoniinae on account of the strongly produced inferior orbital margin with reflected inner flange, and the basicerite of the antenna armed with an angular dorsal process. Fourteen species have been previously recognized as belonging to the ‘P. aesopius species group’. One Eastern Pacific species (P. lucasi Chace), and two Atlantic species (P. anthophilus Holthuis & Eibl- Eibesfeldt, and P. pedersoni Chace) are now also placed in Ancylomenes gen. nov. A further new species associated with a cerianthid sea anemone, A. luteomaculatus sp. nov. is described and illustrated on the basis of specimens from the Ryukyu Islands, southern Japan, and Philippines. A key for their identification, and a checklist of the species of Ancylomenes gen. -
The 1940 Ricketts-Steinbeck Sea of Cortez Expedition: an 80-Year Retrospective Guest Edited by Richard C
JOURNAL OF THE SOUTHWEST Volume 62, Number 2 Summer 2020 Edited by Jeffrey M. Banister THE SOUTHWEST CENTER UNIVERSITY OF ARIZONA TUCSON Associate Editors EMMA PÉREZ Production MANUSCRIPT EDITING: DEBRA MAKAY DESIGN & TYPOGRAPHY: ALENE RANDKLEV West Press, Tucson, AZ COVER DESIGN: CHRISTINE HUBBARD Editorial Advisors LARRY EVERS ERIC PERRAMOND University of Arizona Colorado College MICHAEL BRESCIA LUCERO RADONIC University of Arizona Michigan State University JACQUES GALINIER SYLVIA RODRIGUEZ CNRS, Université de Paris X University of New Mexico CURTIS M. HINSLEY THOMAS E. SHERIDAN Northern Arizona University University of Arizona MARIO MATERASSI CHARLES TATUM Università degli Studi di Firenze University of Arizona CAROLYN O’MEARA FRANCISCO MANZO TAYLOR Universidad Nacional Autónoma Hermosillo, Sonora de México RAYMOND H. THOMPSON MARTIN PADGET University of Arizona University of Wales, Aberystwyth Journal of the Southwest is published in association with the Consortium for Southwest Studies: Austin College, Colorado College, Fort Lewis College, Southern Methodist University, Texas State University, University of Arizona, University of New Mexico, and University of Texas at Arlington. Contents VOLUME 62, NUMBER 2, SUmmer 2020 THE 1940 RICKETTS-STEINBECK SEA OF CORTEZ EXPEDITION: AN 80-YEAR RETROSPECTIVE GUesT EDITed BY RIchard C. BRUsca DedIcaTed TO The WesTerN FLYer FOUNdaTION Publishing the Southwest RIchard C. BRUsca 215 The 1940 Ricketts-Steinbeck Sea of Cortez Expedition, with Annotated Lists of Species and Collection Sites RIchard C. BRUsca 218 The Making of a Marine Biologist: Ed Ricketts RIchard C. BRUsca AND T. LINdseY HasKIN 335 Ed Ricketts: From Pacific Tides to the Sea of Cortez DONald G. Kohrs 373 The Tangled Journey of the Western Flyer: The Boat and Its Fisheries KEVIN M. -
Feeding Biology of Intertidal Sea Anemones in the South-"'Estern Cape
FEEDING BIOLOGY OF INTERTIDAL SEA ANEMONES IN THE SOUTH-"'ESTERN CAPE by Lisa Kruger Town Thesis submitted forCape the degree of Masterof of Science Zoology Department and Marine Biology Research Institute, UnivesityUniversity of Cape Town May 1995 The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgementTown of the source. The thesis is to be used for private study or non- commercial research purposes only. Cape Published by the University ofof Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University I AM NOT Af FLoWER!, l M A CARNIVDRQV5 (N\lERTE B RXrE 'M-Io STaNGS AJJD EATS OT.e.R CREATuRE.S, WHA-r DO 'tOU ~ Do FOt< A LlV1NQ? I EA.l SEA t ANEMONES US DAFFODILS suRE" KID AROUND A Lo-r ! ii For my best friends, Des - who helped the most and Dee - whose memory accompanies me always DECLARATION This thesis reports the results of original research which I have carried out in the Marine Biology Research Institute, University of Cape Town, between 1992 and 1995. Throughout this study I was involved in the gathering, assimilation and interpretation of data, as well as the writing up of the project. This work has not been submitted for a degree at any other university and any assistance I received is fully acknowledged. Lisa Kruger Date iv TABLE OF CONTENTS ABSTRACT V1 ACKNOWLEDGMENTS V1n GENERAL INTRODUCTION 1 CHAPTER 1. THE NATURE AND DISTRIBUTION OF INTERTIDAL SEA ANEMONE ASSEMBLAGES AT TWO SITES IN THE SOUTH-WESTERN CAPE 6 Methods 7 Study sites 7 Sampling procedure 9 Results 10 Abundance and distribution 11 Size distribution 15 Discussion 21 Conclusion 26 CHAPTER 2. -
19201051.Pdf
Universidad de El Salvador Facultad de Ciencias Naturales y Matemática Escuela de Biología Trabajo de Graduación Diversidad de Anémonas de Mar (Anthozoa: Actiniaria) en la zona intermareal de las playas rocosas del Área Natural Protegida Los Cóbanos y Punta Amapala, El Salvador. Trabajo de graduación presentado por: ADRIANA JANNET RAMÍREZ ORELLANA PARA OPTAR AL GRADO DE: LICENCIADA EN BIOLOGÍA CIUDAD UNIVERSITARIA, MARZO DE 2017. UNIVERSIDAD DE EL SALVADOR FACULTAD DE CIENCIAS NATURALES Y MATEMÁTICA ESCUELA DE BIOLOGÍA Diversidad de Anémonas de Mar (Anthozoa: Actiniaria) en la zona intermareal de las playas rocosas del Área Natural Protegida Los Cóbanos y Punta Amapala, El Salvador. Trabajo de graduación presentado por: ADRIANA JANNET RAMÍREZ ORELLANA PARA OPTAR AL GRADO DE: LICENCIADA EN BIOLOGÍA ASESORA DE LA INVESTIGACIÓN: ______________________________ M.Sc. Johanna Vanessa Segovia CIUDAD UNIVERSITARIA, MARZO DE 2017. UNIVERSIDAD DE EL SALVADOR FACULTAD DE CIENCIAS NATURALES Y MATEMÁTICA ESCUELA DE BIOLOGÍA Diversidad de Anémonas de Mar (Anthozoa: Actiniaria) en la zona intermareal de las playas rocosas del Área Natural Protegida Los Cóbanos y Punta Amapala, El Salvador. Trabajo de graduación presentado por: ADRIANA JANNET RAMÍREZ ORELLANA PARA OPTAR AL GRADO DE: LICENCIADA EN BIOLOGÍA JURADO EVALUADOR: _______________________________ Licda. Ana María Rivera _______________________________ Licda. Martha Noemy Martínez Hernández CIUDAD UNIVERSITARIA, MARZO DE 2017. 3 AUTORIDADES UNIVERSITARIAS RECTOR INTERINO LIC. LUIS ARGUETA ANTILLÓN SECRETARIO/A GENERAL DRA. LETICIA ZAVALETA DE AMAYA FISCAL GENERAL LICDA. BEATRIZ MÉNDEZ FACULTAD DE CIENCIAS NATURALES Y MATEMÁTICA DECANO Lic. MAURICIO HERNÁN LOVO SECRETARIO/A LIC. DAMARYS MELANY HERRERA TURCIOS DIRECTORA DE LA ESCUELA DE BIOLOGÍA M.Sc. ANA MARTHA ZETINO CALDERON CIUDAD UNIVERSITARIA, MARZO DE 2017. -
Tentacle Morphological Variation Coincides with Differential Expression of Toxins in Sea Anemones
toxins Article Tentacle Morphological Variation Coincides with Differential Expression of Toxins in Sea Anemones Lauren M. Ashwood 1,* , Michela L. Mitchell 2,3,4,5 , Bruno Madio 6, David A. Hurwood 1,7, Glenn F. King 6,8 , Eivind A. B. Undheim 9,10,11 , Raymond S. Norton 2,12 and Peter J. Prentis 1,7 1 School of Biology and Environmental Science, Faculty of Science, Queensland University of Technology, Brisbane, QLD 4000, Australia; [email protected] (D.A.H.); [email protected] (P.J.P.) 2 Medicinal Chemistry, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, VIC 3052, Australia; [email protected] (M.L.M.); [email protected] (R.S.N.) 3 Sciences Department, Museum Victoria, G.P.O. Box 666, Melbourne, VIC 3001, Australia 4 Queensland Museum, P.O. Box 3000, South Brisbane, QLD 4101, Australia 5 Bioinformatics Division, Walter & Eliza Hall Institute of Research, 1G Royal Parade, Parkville, VIC 3052, Australia 6 Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia; [email protected] (B.M.); [email protected] (G.F.K.) 7 Centre for Agriculture and the Bioeconomy, Queensland University of Technology, Brisbane, QLD 4000, Australia 8 ARC Centre for Innovations in Peptide and Protein Science, The University of Queensland, St Lucia, QLD 4072, Australia 9 Centre for Advanced Imaging, The University of Queensland, St Lucia, QLD 4072, Australia; [email protected] 10 Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway 11 Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Blindern, NO-0316 Oslo, Norway Citation: Ashwood, L.M.; Mitchell, 12 ARC Centre for Fragment-Based Design, Monash University, Parkville, VIC 3052, Australia M.L.; Madio, B.; Hurwood, D.A.; * Correspondence: [email protected] King, G.F.; Undheim, E.A.B.; Norton, R.S.; Prentis, P.J.