Spermatogenesis and the Structure of the Testes in Nemertodermatida
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Xenacoelomorpha's Significance for Understanding Bilaterian Evolution
Available online at www.sciencedirect.com ScienceDirect Xenacoelomorpha’s significance for understanding bilaterian evolution Andreas Hejnol and Kevin Pang The Xenacoelomorpha, with its phylogenetic position as sister biology models are the fruitfly Drosophila melanogaster and group of the Nephrozoa (Protostomia + Deuterostomia), plays the nematode Caenorhabditis elegans, in which basic prin- a key-role in understanding the evolution of bilaterian cell types ciples of developmental processes have been studied in and organ systems. Current studies of the morphological and great detail. It might be because the field of evolutionary developmental diversity of this group allow us to trace the developmental biology — EvoDevo — has its origin in evolution of different organ systems within the group and to developmental biology and not evolutionary biology that reconstruct characters of the most recent common ancestor of species under investigation are often called ‘model spe- Xenacoelomorpha. The disparity of the clade shows that there cies’. Criteria for selected representative species are cannot be a single xenacoelomorph ‘model’ species and primarily the ease of access to collected material and strategic sampling is essential for understanding the evolution their ability to be cultivated in the lab [1]. In some cases, of major traits. With this strategy, fundamental insights into the a supposedly larger number of ancestral characters or a evolution of molecular mechanisms and their role in shaping dominant role in ecosystems have played an additional animal organ systems can be expected in the near future. role in selecting model species. These arguments were Address used to attract sufficient funding for genome sequencing Sars International Centre for Marine Molecular Biology, University of and developmental studies that are cost-intensive inves- Bergen, Thormøhlensgate 55, 5008 Bergen, Norway tigations. -
New and Known Nemertodermatida (Platyhelminthes-Acoelomorpha)
Belg. J. Zoo!. - Volume 128 (1998) - issue 1 - pages 55-92 - Brussels 1998 Received: 18 February 1998 NEW AND KNOWN NEMERTODERMATIDA (PLATYHELMINTHES-ACOELOMORPHA)... -A REVISION - WOLFGANG STERRER Bermuda Natural History Museum, Flatts FLBX, Bermuda e-mail [email protected] Abstract. Described in 1930-31 by Steinbiick who considered it the most primitive bilaterian, the turbellarian genus Nemertoderma is known for its rote in platyhelminth phylogeny as much as for its muddled taxonomy. On the basis of material collected in the Mediterranean, Atlantic and Pacifie Oceans sin ce 1964 this paper re-diagnoses the known 4 genera and 7 species (Nemertoderma bathycola Steinbiick, 1930-31 ; N. westbladi Steinbiick, 1938; N. psammicola Sterrer, 1970 (syn. N. rubra Faubel, 1976); Meara stichopi Westblad, 1949; Meara sp. (see SMITH et al., 1994); Nemertinoides elongatus Riser, 1987 ; and Flagellophora apelti Fau bel & Diirjes, 1978), describes one new genus with 2 new species (Ascoparia neglecta n. g., n. sp. and A. secunda n. sp.), and pro vides observations from living material on morphological variability, body size vs . reproductive state, statocyst structure and statolith variability, and sperm morphology and dimorphism. The paper concludes with diagnoses for the known taxa of Nemertodermatida, including the new family Ascopariidae. Key words: Platyhelminthes, free-living, marine; systematics, new species. INTRODUCTION ln 1930-31 Otto STEfNBOCK described Nemertoderma bathycola from a single tiny worm whicb he and Erich Reisinger bad dredged from a muddy bottom, at 300-400 rn depth, off Greenland. Nemertoderma caused a small sensation, not only because Steinbock, a meticulous observer, was also an assertive character (who liked to express himself double-spaced, with exclamation marks added) but because Nemertoderma was indeed unusual. -
Biomolecule and Bioentity Interaction Databases in Systems Biology: a Comprehensive Review
biomolecules Review Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review Fotis A. Baltoumas 1,* , Sofia Zafeiropoulou 1, Evangelos Karatzas 1 , Mikaela Koutrouli 1,2, Foteini Thanati 1, Kleanthi Voutsadaki 1 , Maria Gkonta 1, Joana Hotova 1, Ioannis Kasionis 1, Pantelis Hatzis 1,3 and Georgios A. Pavlopoulos 1,3,* 1 Institute for Fundamental Biomedical Research, Biomedical Sciences Research Center “Alexander Fleming”, 16672 Vari, Greece; zafeiropoulou@fleming.gr (S.Z.); karatzas@fleming.gr (E.K.); [email protected] (M.K.); [email protected] (F.T.); voutsadaki@fleming.gr (K.V.); [email protected] (M.G.); hotova@fleming.gr (J.H.); [email protected] (I.K.); hatzis@fleming.gr (P.H.) 2 Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, 2200 Copenhagen, Denmark 3 Center for New Biotechnologies and Precision Medicine, School of Medicine, National and Kapodistrian University of Athens, 11527 Athens, Greece * Correspondence: baltoumas@fleming.gr (F.A.B.); pavlopoulos@fleming.gr (G.A.P.); Tel.: +30-210-965-6310 (G.A.P.) Abstract: Technological advances in high-throughput techniques have resulted in tremendous growth Citation: Baltoumas, F.A.; of complex biological datasets providing evidence regarding various biomolecular interactions. Zafeiropoulou, S.; Karatzas, E.; To cope with this data flood, computational approaches, web services, and databases have been Koutrouli, M.; Thanati, F.; Voutsadaki, implemented to deal with issues such as data integration, visualization, exploration, organization, K.; Gkonta, M.; Hotova, J.; Kasionis, scalability, and complexity. Nevertheless, as the number of such sets increases, it is becoming more I.; Hatzis, P.; et al. Biomolecule and and more difficult for an end user to know what the scope and focus of each repository is and how Bioentity Interaction Databases in redundant the information between them is. -
Marine Flora and Fauna of the Northeastern United States
NOAA Technical Report NMFS Circular 440 Marine Flora and Fauna of the Northeastern United States. Turbellaria: Acoela and Nemertodermatida Louise F. Bush July 1981 u.s. DEPARTMENT OF COMMERCE Malcolm Baldrige, Secretary National Oceanic and Atmospheric Administration National Marine Fisheries Service Terry L. Leitzell, Assistant Administrator for FisherIes FOREWORD This NMFS Circular is part of the subseries "Marine Flora and Fauna of the Northeastern United States;' which consists of original, illustrated, modern manuals on the identification, classification, and general biology of the estuarine and coastal marine plants and, animals of the northeastern United States. The manuals are published at irregular intervals on as many taxa of the region as there are specialists available to collaborate in their preparation. Geographic coverage of the "Marine Flora and Fauna of the Northeastern United States" is planned to include organisms from the headwaters of estuaries seaward to approximately the 200 m depth on the continental shelf from Maine to Virginia, but may vary somewhat with each major taxon and the interests of collaborators. Whenever possible representative specimens dealt with in the manuals are deposited in the reference collections of major museums of the region. The "Marine Flora and Fauna of the Northeastern United States" is being prepared in col laboration with systematic specialists in the United States and abroad. Each manual is based primarily on recent and ongoing revisionary systematic research and a fresh examination of the plants and animals, Each major taxon, treated in a separate manual, includes an introduction, illustrated glossary, uniform originally illustrated keys, annotated checklist with information \vhen available on distribution, habitat, life history, and related biology, references to the major literature of the group, and a systematic jnde:\. -
Summary of Thesis 4
Contents List of Papers 2 Abstract 3 Introduction 5 Biodiversity – why should we care? 5 Marine meiofauna 6 What are Nemertodermatida 7 General morphology 8 Ultrastructure 8 Historical overview of the taxon 9 Phylogenetic position 11 Classification 12 Methods 13 Sampling 13 Infrastructure and general workflow 14 Fixation 16 Abundance and patchiness 18 Collection effort for this thesis 19 Confocal Laser Scanning Microscopy (CLSM) 20 Principal of CLSM 20 Phalloidin staining of F-actin 21 Immunolabelling of the nervous system 22 Molecular Analyses 24 DNA extraction, amplification & sequencing 25 Data properties 26 Phylogenetic analyses 27 Discussion and future perspectives 27 Literature cited 33 Acknowledgements 39 List of papers Paper I Meyer-Wachsmuth I, Raikova OI, Jondelius U (2013): The muscular system of Nemertoderma westbladi and Meara stichopi (Nemertodermatida, Acoelomorpha). Zoomorphology 132: 239–252. doi:10.1007/s00435-013-0191-6. Paper II Meyer-Wachsmuth I, Curini Galletti, M, Jondelius U (in press): Hyper-cryptic marine meiofauna: species complexes in Nemertodermatida. PLOS One 9: e107688. doi:10.1371/journal.pone.0107688 Paper III Meyer-Wachsmuth I, Jondelius U: A multigene molecular assessment reveals deep divergence in the phylogeny of Nemertodermatida. (Manuscript) Paper IV Raikova OI, Meyer-Wachsmuth I, Jondelius U: Nervous system and morphology of three species of Nemertodermatida (Acoelomorpha) as revealed by immunostainings, phalloidin staining, and confocal and differential interference contrast microscopy. (Manuscript) 2 Abstract Nemertodermatida is a group of microscopic marine worm-like animals that live as part of the marine meiofauna in sandy or muddy sediments; one species lives commensally in a holothurian. These benthic worms were thought to disperse passively with ocean currents, resulting in little speciation and thus wide or even cosmopolitan distributions. -
Xenacoelomorpha Is the Sister Group to Nephrozoa
LETTER doi:10.1038/nature16520 Xenacoelomorpha is the sister group to Nephrozoa Johanna Taylor Cannon1, Bruno Cossermelli Vellutini2, Julian Smith III3, Fredrik Ronquist1, Ulf Jondelius1 & Andreas Hejnol2 The position of Xenacoelomorpha in the tree of life remains a major as sister taxon to remaining Bilateria19 (Fig. 1b–e). The deuterostome unresolved question in the study of deep animal relationships1. affiliation derives support from three lines of evidence4: an analysis Xenacoelomorpha, comprising Acoela, Nemertodermatida, and of mitochondrial gene sequences, microRNA complements, and a Xenoturbella, are bilaterally symmetrical marine worms that lack phylogenomic data set. Analyses of mitochondrial genes recovered several features common to most other bilaterians, for example Xenoturbella within deuterostomes18. However, limited mitochon- an anus, nephridia, and a circulatory system. Two conflicting drial data (typically ~16 kilobase total nucleotides, 13 protein-coding hypotheses are under debate: Xenacoelomorpha is the sister group genes) are less efficient in recovering higher-level animal relationships to all remaining Bilateria (= Nephrozoa, namely protostomes than phylogenomic approaches, especially in long-branching taxa1. and deuterostomes)2,3 or is a clade inside Deuterostomia4. Thus, The one complete and few partial mitochondrial genomes for acoelo- determining the phylogenetic position of this clade is pivotal for morphs are highly divergent in terms of both gene order and nucleotide understanding the early evolution of bilaterian features, or as a sequence19,20. Analyses of new complete mitochondrial genomes of case of drastic secondary loss of complexity. Here we show robust Xenoturbella spp. do not support any phylogenetic hypothesis for this phylogenomic support for Xenacoelomorpha as the sister taxon taxon21. Ref. 4 proposes that microRNA data support Xenacoelomorpha of Nephrozoa. -
Introduction to the Bilateria and the Phylum Xenacoelomorpha Triploblasty and Bilateral Symmetry Provide New Avenues for Animal Radiation
CHAPTER 9 Introduction to the Bilateria and the Phylum Xenacoelomorpha Triploblasty and Bilateral Symmetry Provide New Avenues for Animal Radiation long the evolutionary path from prokaryotes to modern animals, three key innovations led to greatly expanded biological diversification: (1) the evolution of the eukaryote condition, (2) the emergence of the A Metazoa, and (3) the evolution of a third germ layer (triploblasty) and, perhaps simultaneously, bilateral symmetry. We have already discussed the origins of the Eukaryota and the Metazoa, in Chapters 1 and 6, and elsewhere. The invention of a third (middle) germ layer, the true mesoderm, and evolution of a bilateral body plan, opened up vast new avenues for evolutionary expan- sion among animals. We discussed the embryological nature of true mesoderm in Chapter 5, where we learned that the evolution of this inner body layer fa- cilitated greater specialization in tissue formation, including highly specialized organ systems and condensed nervous systems (e.g., central nervous systems). In addition to derivatives of ectoderm (skin and nervous system) and endoderm (gut and its de- Classification of The Animal rivatives), triploblastic animals have mesoder- Kingdom (Metazoa) mal derivatives—which include musculature, the circulatory system, the excretory system, Non-Bilateria* Lophophorata and the somatic portions of the gonads. Bilater- (a.k.a. the diploblasts) PHYLUM PHORONIDA al symmetry gives these animals two axes of po- PHYLUM PORIFERA PHYLUM BRYOZOA larity (anteroposterior and dorsoventral) along PHYLUM PLACOZOA PHYLUM BRACHIOPODA a single body plane that divides the body into PHYLUM CNIDARIA ECDYSOZOA two symmetrically opposed parts—the left and PHYLUM CTENOPHORA Nematoida PHYLUM NEMATODA right sides. -
New and Known Nemertodermatida (Platyhelminthes-Acoelomorpha) - a Revision
Belg. J. Zool. - Volume 128 (1998) - issue 1 - pages 55-92 - Brussels 1998 - -- - - - - Received: 18 February 1998 NEW AND KNOWN NEMERTODERMATIDA (PLATYHELMINTHES-ACOELOMORPHA) - A REVISION - WOLFGANGSTERRER Bermuda Natural History Museum, Flatts FLBX, Bermuda e-mail [email protected] Abstract. Described in 1930-3 1 by Steinbock who considered it the most primitive bilaterian, the turbellarian genus Nemertoderma is known for its role in platyhelminth phylogeny as much as for its muddled taxonomy. On the basis of material collected in the Mediterranean, Atlantic and Pacific Oceans since 1964 this paper re-diagnoses the known 4 genera and 7 species (Nemertoderma bathycola Steinbock, 1930-31 ; N. westbladi Steinbock, 1938; N. psammicola Sterrer, 1970 (syn. N. rubra Faubel, 1976); Meara stichopi Westblad, 1949 ; Meara sp. (see SMITHet al., 1994) ; Nemertinoides elongatus Riser, 1987; and Flagellophora apelti Faubel & Dorjes, 1978), describes one new genus with 2 new species (Ascoparia neglecta n. g., n. sp. and A. secunda n. sp.), and pro- vides observations from living material on morphological variability, body size vs. reproductive state, statocyst structure and statolith variability, and sperm morphology and dimorphism. The paper concludes with diagnoses for the known taxa of Nemertodermatida, including the new family Ascopariidae. Key words: Platyhelminthes, free-living, marine; systematics, new species. INTRODUCTION In 1930-31 Otto STEINBOCKdescribed Nemertoderma bathycola from a single tiny worm which he and Erich Reisinger had dredged from a muddy bottom, at 300-400 m depth, off Greenland. Nemertoderma caused a small sensation, not only because Steinbock, a meticulous observer, was also an assertive character (who liked to express himself double-spaced, with exclamation marks added) but because Nemertoderma was indeed unusual. -
Excretion Through Digestive Tissues Predates the Evolution of Excretory Organs
bioRxiv preprint doi: https://doi.org/10.1101/136788; this version posted May 11, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Excretion through digestive tissues predates the evolution of excretory organs Carmen Andrikou1, Daniel Thiel1, Antonio J. Ruiz-Santiesteban1, Andreas Hejnol1* 1Sars International Centre for Marine Molecular Biology, University of Bergen, Thormøhlensgate 55, 5006 Bergen, Norway * Corresponding author: [email protected] Abstract Excretion is a fundamental process for animal survival and led to the evolution of specialized excretory organs that facilitate the removal of metabolic waste products. Excretory organs such as nephridia and kidneys are seen as a nephrozoan novelty since they have neither been found in Xenacoelomorpha (Xenoturbella + Acoelomorpha) nor outside Bilateria. Xenacoelomorphs are thus informative for the reconstruction of ancient bilaterian excretory mechanisms and the evolution of excretory organs. In this study we investigated excretion in the acoel Isodiametra pulchra, characterized by a syncytial gut, and the nemertodermatid Meara stichopi, with an epithelial gut, that both belong to the Acoelomorpha. We examined the expression of excretion-related genes that are associated with the different functional and anatomical sections of nephridia (ultrafiltration-affiliated genes, rootletin, solute carrier transporters (SLCs), aquaporins) and genes involved in ammonia excretion (Rhesus, Na+/K+ ATPase, v-ATPase (a and b), Carbonic Anhydrase A 2 and 4). We found that in both animals most of these genes are expressed in defined domains that are in proximity to the reproductive and digestive systems. -
Xenacoelomorpha's Significance for Understanding Bilaterian
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Available online at www.sciencedirect.com ScienceDirect Xenacoelomorpha’s significance for understanding bilaterian evolution Andreas Hejnol and Kevin Pang The Xenacoelomorpha, with its phylogenetic position as sister biology models are the fruitfly Drosophila melanogaster and group of the Nephrozoa (Protostomia + Deuterostomia), plays the nematode Caenorhabditis elegans, in which basic prin- a key-role in understanding the evolution of bilaterian cell types ciples of developmental processes have been studied in and organ systems. Current studies of the morphological and great detail. It might be because the field of evolutionary developmental diversity of this group allow us to trace the developmental biology — EvoDevo — has its origin in evolution of different organ systems within the group and to developmental biology and not evolutionary biology that reconstruct characters of the most recent common ancestor of species under investigation are often called ‘model spe- Xenacoelomorpha. The disparity of the clade shows that there cies’. Criteria for selected representative species are cannot be a single xenacoelomorph ‘model’ species and primarily the ease of access to collected material and strategic sampling is essential for understanding the evolution their ability to be cultivated in the lab [1]. In some cases, of major traits. With this strategy, fundamental insights into the a supposedly larger number of ancestral characters or a evolution of molecular mechanisms and their role in shaping dominant role in ecosystems have played an additional animal organ systems can be expected in the near future. role in selecting model species. -
Hofstenia Spp., Acoela), with Notes on Color Variation and Genetic Variation Within the Genus
Hydrobiologia (2007) 592:439–454 DOI 10.1007/s10750-007-0789-0 PRIMARY RESEARCH PAPER A revision of the systematics of panther worms (Hofstenia spp., Acoela), with notes on color variation and genetic variation within the genus Matthew Hooge Æ Andreas Wallberg Æ Christiane Todt Æ Aaron Maloy Æ Ulf Jondelius Æ Seth Tyler Received: 28 July 2006 / Revised: 12 May 2007 / Accepted: 17 May 2007 / Published online: 31 July 2007 Ó Springer Science+Business Media B.V. 2007 Abstract Species of the genus Hofstenia are islands of Bermuda and the Bahamas, and the voracious predators and among the largest and Caribbean and in a variety of habitats includ- most colorful of the Acoela. They are known ing the rocky intertidal, among Thalassia sea from Japan, the Red Sea, the North Atlantic grass, on filamentous algae and decaying man- grove leaves. Certain color morphs associated with each of these habitats seem to have confused the taxonomy of the group. While Handling editor: K. Martens brown-and-white banding and spotting patterns of Hofstenia miamia and Hofstenia giselae are Electronic supplementary material The online version of this article (doi:10.1007/s10750-007-0789-0) contains distinctive for species associated with mangrove supplementary material, which is available to authorized leaves and Thallasia sp. and are likely to be users. cryptic for these specific environments, we find some evidence to suggest that the coloration is M. Hooge (&) S. Tyler Department of BiologicalÁ Sciences, The University of mimicry of a nudibranch with aposematic Maine, Orono, ME 04469-5751, USA coloration. The common plan in these patterns e-mail: [email protected] is one with three variously solid or spotted lighter cross bands on a dark background. -
Phylogenetic Taxonomy in Drosophila Problems and Prospects
[Fly 3:1, 10-14; January/February/March 2009]; ©2009 Landes Bioscience Drosophila taxonomy Review Phylogenetic taxonomy in Drosophila Problems and prospects Patrick M. O’Grady1,* and Therese A. Markow2 1University of California, Berkeley; Department of Environmental Science; Policy and Management; Berkeley, California USA; 2University of California, San Diego; Division of Biological Sciences; San Diego, California USA Key words: Drosophila, taxonomy, phylogenetics, evolution, classification The genus Drosophila is one of the best-studied model systems A given group of organisms can be classified as monophyletic, in modern biology, with twelve fully sequenced genomes available. paraphyletic or polyphyletic (Fig. 1A–C). Monophyletic groups, or In spite of the large number of genetic and genomic resources, clades, consist of a common ancestor and all descendants of that little is known concerning the phylogenetic relationships, ecology ancestor (Fig. 1A). Basing taxonomic structure on clades is a powerful and evolutionary history of all but a few species. Recent molecular approach because it provides information about the composition systematic studies have shown that this genus is comprised of at and exclusivity of a group. Shared derived characters that delimit a least three independent lineages and that several other genera are group can also be used to tentatively place newly discovered species. actually imbedded within Drosophila. This genus accounts for over Paraphyletic groups contain an ancestor and only some descendants 2,000 described, and many more undescribed, species. While some of that ancestor (Fig. 1B). Because some descendants of an ancestor Drosophila researchers are advocating dividing this genus into are not present in a paraphyletic group, these are less useful when three or more separate genera, others favor maintaining Drosophila trying to make an explicit statement about the evolutionary history as a single large genus.