Mammalian Epoxide Hydrolases in Xenobiotic Metabolism and Signalling
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Role of Epoxide Hydrolases in Lipid Metabolism
Biochimie 95 (2013) 91e95 Contents lists available at SciVerse ScienceDirect Biochimie journal homepage: www.elsevier.com/locate/biochi Mini-review Role of epoxide hydrolases in lipid metabolism Christophe Morisseau* Department of Entomology and U.C.D. Comprehensive Cancer Center, One Shields Avenue, University of California, Davis, CA 95616, USA article info abstract Article history: Epoxide hydrolases (EH), enzymes present in all living organisms, transform epoxide-containing lipids to Received 29 March 2012 1,2-diols by the addition of a molecule of water. Many of these oxygenated lipid substrates have potent Accepted 8 June 2012 biological activities: host defense, control of development, regulation of blood pressure, inflammation, Available online 18 June 2012 and pain. In general, the bioactivity of these natural epoxides is significantly reduced upon metabolism to diols. Thus, through the regulation of the titer of lipid epoxides, EHs have important and diverse bio- Keywords: logical roles with profound effects on the physiological state of the host organism. This review will Epoxide hydrolase discuss the biological activity of key lipid epoxides in mammals. In addition, the use of EH specific Epoxy-fatty acids Cholesterol epoxide inhibitors will be highlighted as possible therapeutic disease interventions. Ó Juvenile hormone 2012 Elsevier Masson SAS. All rights reserved. 1. Introduction hydrolyzed by a water molecule [8]. Based on this mechanism, transition-state inhibitors of EHs have been designed (Fig. 1B). Epoxides are three atom cyclic ethers formed by the oxidation of These ureas and amides are tight-binding competitive inhibitors olefins. Because of their highly polarized oxygen-carbon bonds and with low nanomolar dissociation constants (KI) [9] [10]. -
Multi-Omic Understanding of the Evolution of Xenobiotic Tolerance in Bacterial Isolates and Communities
Washington University in St. Louis Washington University Open Scholarship Arts & Sciences Electronic Theses and Dissertations Arts & Sciences Summer 8-15-2019 Multi-omic Understanding of the Evolution of Xenobiotic Tolerance in Bacterial Isolates and Communities Tayte Paul Campbell Washington University in St. Louis Follow this and additional works at: https://openscholarship.wustl.edu/art_sci_etds Part of the Bioinformatics Commons, Biology Commons, and the Microbiology Commons Recommended Citation Campbell, Tayte Paul, "Multi-omic Understanding of the Evolution of Xenobiotic Tolerance in Bacterial Isolates and Communities" (2019). Arts & Sciences Electronic Theses and Dissertations. 1888. https://openscholarship.wustl.edu/art_sci_etds/1888 This Dissertation is brought to you for free and open access by the Arts & Sciences at Washington University Open Scholarship. It has been accepted for inclusion in Arts & Sciences Electronic Theses and Dissertations by an authorized administrator of Washington University Open Scholarship. For more information, please contact [email protected]. WASHINGTON UNIVERSITY IN ST. LOUIS Division of Biology and Biomedical Sciences Plant and Microbial Biosciences Dissertation Examination Committee: Gautam Dantas, Chair Arpita Bose Andrew Kau Audrey Odom-John Himadri Pakrasi Fuzhong Zhang Multi-omic Understanding of the Evolution of Xenobiotic Tolerance in Bacterial Isolates and Communities by Tayte P. Campbell A dissertation presented to The Graduate School of Washington University in partial fulfillment -
Polychlorinated Biphenyls in Pigments
doi: 10.1111/cote.12167 Polychlorinated biphenyls in pigments: inadvertent production and environmental Coloration significance Technology Lisa Rodenburg,a Jia Guoa and Robert Christieb,* aDepartment of Environmental Science, Rutgers, The State University of New Jersey, New Brunswick, NJ, 08901, USA bSchool of Textiles and Design, Heriot-Watt University, Scottish Borders Campus, Netherdale, Galashiels, TD1 3HF, UK Feature article Email: [email protected] Society of Dyers and Colourists Received: 18 December 2014; Accepted: 26 June 2015 Polychlorobiphenyls are toxic, bioaccumulative, and persistent chemicals whose intentional manufacture has been banned throughout the developed world. Polychlorobiphenyls may be generated inadvertently during the production of certain pigments, including diarylides. This inadvertent production is allowed under various regulatory schemes, such as the Toxic Substances Control Act in the United States and the Stockholm Convention on Persistent Organic Pollutants. Generally, these regulations require polychlorobiphenyl levels in batches of pigment to be less than certain regulatory limits, usually 50 ppm. A growing body of evidence suggests that the use of pigments is dispersing polychlorobiphenyls throughout the environment. Polychlorobiphenyl congeners associated with pigments have been found throughout the United States in sediments and in surface waters at levels exceeding the prevailing water quality standards. A recent Japanese government study reported measured polychlorobiphenyl concentrations well -
Development of a Transplantable Liver Graft from a Tiny Partial Liver( Dissertation 全文 )
Auxiliary xenotransplantation as an in vivo bioreactor - Title Development of a transplantable liver graft from a tiny partial liver( Dissertation_全文 ) Author(s) Masano, Yuki Citation 京都大学 Issue Date 2020-03-23 URL https://doi.org/10.14989/doctor.r13329 Right https://onlinelibrary.wiley.com/journal/13993089 Type Thesis or Dissertation Textversion ETD Kyoto University Received: 27 November 2018 | Revised: 25 May 2019 | Accepted: 27 June 2019 DOI: 10.1111/xen.12545 ORIGINAL ARTICLE Auxiliary xenotransplantation as an in vivo bioreactor— Development of a transplantable liver graft from a tiny partial liver Yuki Masano1 | Shintaro Yagi1 | Yosuke Miyachi1 | Shinya Okumura1 | Toshimi Kaido1 | Hironori Haga2 | Eiji Kobayashi3 | Shinji Uemoto1 1Division of Hepato‐Biliary‐Pancreatic and Transplant Surgery, Department of Surgery, Abstract Graduate School of Medicine, Kyoto Background: We established a completely novel method of auxiliary xenogeneic University, Kyoto, Japan partial liver transplantation and examined whether liver grafts procured from Syrian 2Department of Diagnostic Pathology, Kyoto University Hospital, Kyoto, Japan hamsters regenerated in nude rats, which were used as in vivo bioreactors. 3Department of Organ Fabrication, Keio Methods: The hamsters and the rats were all males (n = 10). Partial liver grafts from University School of Medicine, Tokyo, Japan hamsters were transplanted into nude rats in an auxiliary manner. We evaluated liver Correspondence graft injury, rejection, and regeneration during 7 days after auxiliary xenogeneic par- Shintaro Yagi, 54 Kawahara‐cho, Shogoin, Sakyo‐ku, Kyoto, 606‐8507, Japan. tial liver transplantation. Email: [email protected]‐u.ac.jp Results: All rats survived until sacrifice on post‐operative day (POD) 1, 3, and 7. HE‐ Funding information staining showed normal at POD1, mild periportal edema, and slight bile duct and Japan Society for the Promotion of Science, venous endothelial inflammation at POD3, and moderate acute cellular rejection at Grant/Award Number: 17H06814 POD7 without parenchymal necrosis. -
Disruption of Soluble Epoxide Hydrolase Dimerization As a Novel Therapeutic Target for Stroke
DISRUPTION OF SOLUBLE EPOXIDE HYDROLASE DIMERIZATION AS A NOVEL THERAPEUTIC TARGET FOR STROKE By Jonathan W. Nelson A THESIS/DISSERTATION Presented to the Department of Molecular and Medical Genetics and the Oregon Health & Science University School of Medicine in partial fulfillment of the requirements for the degree of Doctor of Philosophy April 2013 TABLE OF CONTENTS List of Figures ...................................................................................................................... vi List of Tables ...................................................................................................................... vii List of Abbreviations ......................................................................................................... viii Acknowledgements ........................................................................................................... xiii Dissertation Abstract ........................................................................................................ xvi Chapter 1 Targeting Soluble Epoxide Hydrolase Dimerization As a Stroke Therapy ......... 1 Abstract ........................................................................................................................... 1 Stroke and Society ........................................................................................................... 2 Prevention and Treatment of Stroke .............................................................................. 3 Soluble Epoxide Hydrolase and Stroke .......................................................................... -
Transplantation of Engineered Chimeric Liver with Autologous
ORIGINAL ARTICLE Transplantation of Engineered Chimeric Liver With Autologous Hepatocytes and Xenobiotic Scaffold Toshiyuki Hata, MD,∗† Shinji Uemoto, MD, PhD,∗ Yasuhiro Fujimoto, MD, PhD,∗ Takashi Murakami, MD, PhD,‡ Chise Tateno, PhD,§ Katsutoshi Yoshizato, PhD,§ and Eiji Kobayashi, MD, PhD|| iver transplantation is currently regarded as the most effective Objective: Generation of human livers in pigs might improve the serious treatment for end-stage liver diseases. Because the worldwide shortage of grafts for human liver transplantation, and enable liver trans- L graft shortage remains unresolved,1,2 engineered organs are antici- plantation without the need for deceased or living donors. We developed a pated as alternative grafts to fill the scarcity and ultimately replace chimeric liver (CL) by repopulation of rat hepatocytes in a mouse and suc- those from deceased and living donors. Although regenerative tech- cessfully transplanted it into a rat recipient with vessel reconstruction. This nology has already developed various kinds of regenerative cells and study was designed to investigate the feasibility of CL for supporting the tissues,3,4 they are still insufficient to cure patients with end-stage recipient after auxiliary liver grafting. liver diseases because of the absence of complicated functions and Methods: Hepatocytes from luciferase transgenic or luciferase/LacZ double- limited volume. Therefore, a regenerative liver graft for use as an “or- transgenic rats were transplanted into 20- to 30-day-old urokinase-type gan” is required. To achieve an appropriate 3-dimensional structure plasminogen activator/severe-combined immunodeficiency (uPA/SCID) mice and differentiation to specific tissues in a single organ, application of (n = 40) to create CLs with rat-origin hepatocytes. -
Development of Fluorescent Substrates for Microsomal Epoxide Hydrolase
Analytical Biochemistry 414 (2011) 154–162 Contents lists available at ScienceDirect Analytical Biochemistry journal homepage: www.elsevier.com/locate/yabio Development of fluorescent substrates for microsomal epoxide hydrolase and application to inhibition studies ⇑ Christophe Morisseau a, , Maud Bernay a, Aurélie Escaich a, James R. Sanborn a, Jozsef Lango b, Bruce D. Hammock a a Department of Entomology and Cancer Center, University of California – Davis, Davis, CA 95616, USA b Department of Molecular Biosciences, University of California – Davis, Davis, CA 95616, USA article info abstract Article history: The microsomal epoxide hydrolase (mEH) plays a significant role in the metabolism of numerous Received 18 January 2011 xenobiotics. In addition, it has a potential role in sexual development and bile acid transport, and it is Received in revised form 23 February 2011 associated with a number of diseases such as emphysema, spontaneous abortion, eclampsia, and several Accepted 25 February 2011 forms of cancer. Toward developing chemical tools to study the biological role of mEH, we designed and Available online 1 March 2011 synthesized a series of absorbent and fluorescent substrates. The highest activity for both rat and human mEH was obtained with the fluorescent substrate cyano(6-methoxy-naphthalen-2-yl)methyl glycidyl Keywords: carbonate (11). An in vitro inhibition assay using this substrate ranked a series of known inhibitors sim- Microsomal epoxide hydrolase ilarly to the assay that used radioactive cis-stilbene oxide but with a greater discrimination between Fluorescent substrate a-Cyanocarbonate inhibitors. These results demonstrate that the new fluorescence-based assay is a useful tool for the dis- Xenobiotic metabolism covery of structure–activity relationships among mEH inhibitors. -
Analysis of Soybean Embryonic Axis Proteins by Two-Dimensional Gel Electrophoresis and Mass Spectrometry
Journal of Basic & Applied Sciences, 2013, 9, 309-332 309 Analysis of Soybean Embryonic Axis Proteins by Two-Dimensional Gel Electrophoresis and Mass Spectrometry Savithiry S. Natarajana,*, Hari B. Krishnanb, Farooq Khana, Xi Chena, Wesley M. Garrettc and Dilip Lakshmand aUSDA-ARS, Soybean Genomics and Improvement Laboratory, Beltsville, MD 20705, USA bUSDA-ARS, Plant Genetics Research Unit, University of Missouri, Columbia, MO 65211, USA cUSDA-ARS, Animal Science and Biotechnology Laboratory, Beltsville, MD 20705, USA dUSDA-ARS, Sustainable Agricultural Systems Laboratory, Beltsville, MD 20705, USA Abstract: A proteomic approach based on two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) for protein separation and subsequent mass spectrometry (MS) for protein identification was applied to establish a proteomic reference map for the soybean embryonic axis. Proteins were extracted from dissected embryonic axes and separated in the first dimension using a pH range from 4-7. A total of 401 protein spots were isolated, digested with trypsin, and analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS). We identified 335 protein spots by searching National Center for Biotechnology Information (NCBI) non redundant databases using the Mascot search engine and found a total of 200 unique proteins. Gene Ontology (GO) analysis was employed to understand the molecular processes in which the identified embryonic axes proteins are involved. The majority of proteins play a functional role in catalytic activity (42.9%) and binding (39.3%), followed by nutrient reservoir activity (5.3%), structural molecular activity (4.0%), antioxidant activity (3.2%), transporter activity (2.4%), enzyme regulator activity (1.2%), molecular transducer activity (0.8%), and transcription regulator activity (0.8%). -
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance
Genomic Platforms and Molecular Physiology of Insect Stress Tolerance DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Justin Peyton MS Graduate Program in Evolution, Ecology and Organismal Biology The Ohio State University 2015 Dissertation Committee: Professor David L. Denlinger Advisor Professor Zakee L. Sabree Professor Amanda A. Simcox Professor Joseph B. Williams Copyright by Justin Tyler Peyton 2015 Abstract As ectotherms with high surface area to volume ratio, insects are particularly susceptible to desiccation and low temperature stress. In this dissertation, I examine the molecular underpinnings of two facets of these stresses: rapid cold hardening and cryoprotective dehydration. Rapid cold hardening (RCH) is an insect’s ability to prepare for cold stress when that stress is preceded by an intermediate temperature for minutes to hours. In order to gain a better understanding of cold shock, recovery from cold shock, and RCH in Sarcophaga bullata I examine the transcriptome with microarray and the metabolome with gas chromatography coupled with mass spectrometry (GCMS) in response to these treatments. I found that RCH has very little effect on the transcriptome, but results in a shift from aerobic metabolism to glycolysis/gluconeogenesis during RCH and preserved metabolic homeostasis during recovery. In cryoprotective dehydration (CD), a moisture gradient is established between external ice and the moisture in the body of an insect. As temperatures decline, the external ice crystals grow, drawing in more moisture which dehydrates the insect causing its melting point to track the ambient temperature. To gain a better understanding of CD and dehydration in Belgica antarctica I explore the transcriptome with RNA sequencing ii and the metabolome with GCMS. -
Animal Plant Warfare and Secondary Metabolite Evolution
Review Nat. Prod. Bioprospect. 2013, 3, 1–7 DOI 10.1007/s13659-013-0004-0 Animal plant warfare and secondary metabolite evolution a a b a, Steffen WÖLL, Sun Hee KIM, Henry Johannes GRETEN, and Thomas EFFERTH * aDepartment of Pharmaceutical Biology, Institute of Pharmacy and Biochemistry, Johannes Gutenberg-University, Mainz, Germany bInstitute of Biomedical Sciences (ICBAS), University of Porto, Portugal Received 10 January 2013; Accepted 16 February 2013 © The Author(s) 2013. This article is published with open access at Springerlink.com Abstract: The enduring discussion, why plants produce secondary metabolites with pharmacologically and toxicologically active towards mammals traces back to the eminent role of medicinal plants in the millennia-old history of manhood. In recent years, the concept of an animal plant warfare emerged, which focused on the co-evolution between plants and herbivores. As a reaction to herbivory, plants developed mechanical defenses such as thorns and hard shells, which paved the way for adapted animal physiques. Plants evolved further defense systems by producing chemicals that exert toxic effects on the animals that ingest them. As a result of this selective pressure, animals developed special enzymes, e.g. cytochrome P450 monooxigenases (CYP450) that metabolize xenobiotic phytochemicals. As a next step in the evolutionary competition between plants and animals, plants evolved to produce non-toxic pro-drugs, which become toxic only after ingestion by animals through metabolization by enzymes such as CYP450. Because these sequestered evolutionary developments call to mind an arms race, the term animal plant warfare has been coined. The evolutionary competition between plants and animals may help to better understand the modes of action of medicinal plants and to foster the efficient and safe use of phytotherapy nowadays. -
Selection of Endophytic Strains for Enhanced Bacteria-Assisted Phytoremediation of Organic Pollutants Posing a Public Health Hazard
International Journal of Molecular Sciences Review Selection of Endophytic Strains for Enhanced Bacteria-Assisted Phytoremediation of Organic Pollutants Posing a Public Health Hazard Magdalena Anna Kara´s*, Sylwia Wdowiak-Wróbel and Wojciech Sokołowski Department of Genetics and Microbiology, Institute of Biological Sciences, Faculty of Biology and Biotechnology, Maria Curie-Skłodowska University, Akademicka 19, 20-033 Lublin, Poland; [email protected] (S.W.-W.); [email protected] (W.S.) * Correspondence: [email protected]; Tel.: +48-81-537-50-58 Abstract: Anthropogenic activities generate a high quantity of organic pollutants, which have an impact on human health and cause adverse environmental effects. Monitoring of many hazardous contaminations is subject to legal regulations, but some substances such as therapeutic agents, personal care products, hormones, and derivatives of common organic compounds are currently not included in these regulations. Classical methods of removal of organic pollutants involve economically challenging processes. In this regard, remediation with biological agents can be an alternative. For in situ decontamination, the plant-based approach called phytoremediation can be used. However, the main disadvantages of this method are the limited accumulation capacity of plants, sensitivity to the action of high concentrations of hazardous pollutants, and no possibility of using pollutants for growth. To overcome these drawbacks and additionally increase the efficiency of Citation: Kara´s,M.A.; the process, an integrated technology of bacteria-assisted phytoremediation is being used recently. Wdowiak-Wróbel, S.; Sokołowski, W. For the system to work, it is necessary to properly select partners, especially endophytes for specific Selection of Endophytic Strains for Enhanced Bacteria-Assisted plants, based on the knowledge of their metabolic abilities and plant colonization capacity. -
The Evolutionary Significance of Drug Toxicity Over Reward
The evolutionary significance of drug toxicity over reward Edward H. Hagen and Roger J. Sullivan Forthcoming in the Routledge Handbook of Philosophy and Science of Addiction, S. Ahmed and H. Pickard, eds. Drug reward is an evolutionary conundrum. It is not surprising that neural circuitry evolved to reward or reinforce behaviors leading to the essentials of survival and reproduction, like food, water, and sex. Why, though, would these same circuits reward and reinforce the consumption of drugs of abuse, which is often harmful? Here we briefly review the history of reward-based learning, which resulted in a widely accepted evolutionary account of drug reward that we term the hijack hypothesis. We then critique the evolutionary bases of the hijack hypothesis. We conclude by sketching an alternative evolutionary model of human drug use grounded in drug toxicity. Specifically, avoidance of toxic drugs is a compelling hypothesis for the low use of drugs by children and women relative to men. In addition, the regulated ingestion of small quantities of toxins might have provided important medicinal and other benefits to humans and non-human animals over the course of their evolution. Neurobiological theories of drug use are deeply intertwined with those of reward- based learning. The main idea was captured in Thorndike’s law of effect: “Of several responses made to the same situation, those which are accompanied or closely followed by satisfaction to the animal will, other things being equal, be more firmly connected with the situation, so that, when it recurs, they will be more likely to recur" (Thorndike 1911). The related concept of reinforcement refers to the ability of certain stimuli, such as food, to strengthen learned stimulus-response associations.