Xenobiotics: an Essential Precursor for Living System
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Multi-Omic Understanding of the Evolution of Xenobiotic Tolerance in Bacterial Isolates and Communities
Washington University in St. Louis Washington University Open Scholarship Arts & Sciences Electronic Theses and Dissertations Arts & Sciences Summer 8-15-2019 Multi-omic Understanding of the Evolution of Xenobiotic Tolerance in Bacterial Isolates and Communities Tayte Paul Campbell Washington University in St. Louis Follow this and additional works at: https://openscholarship.wustl.edu/art_sci_etds Part of the Bioinformatics Commons, Biology Commons, and the Microbiology Commons Recommended Citation Campbell, Tayte Paul, "Multi-omic Understanding of the Evolution of Xenobiotic Tolerance in Bacterial Isolates and Communities" (2019). Arts & Sciences Electronic Theses and Dissertations. 1888. https://openscholarship.wustl.edu/art_sci_etds/1888 This Dissertation is brought to you for free and open access by the Arts & Sciences at Washington University Open Scholarship. It has been accepted for inclusion in Arts & Sciences Electronic Theses and Dissertations by an authorized administrator of Washington University Open Scholarship. For more information, please contact [email protected]. WASHINGTON UNIVERSITY IN ST. LOUIS Division of Biology and Biomedical Sciences Plant and Microbial Biosciences Dissertation Examination Committee: Gautam Dantas, Chair Arpita Bose Andrew Kau Audrey Odom-John Himadri Pakrasi Fuzhong Zhang Multi-omic Understanding of the Evolution of Xenobiotic Tolerance in Bacterial Isolates and Communities by Tayte P. Campbell A dissertation presented to The Graduate School of Washington University in partial fulfillment -
Polychlorinated Biphenyls in Pigments
doi: 10.1111/cote.12167 Polychlorinated biphenyls in pigments: inadvertent production and environmental Coloration significance Technology Lisa Rodenburg,a Jia Guoa and Robert Christieb,* aDepartment of Environmental Science, Rutgers, The State University of New Jersey, New Brunswick, NJ, 08901, USA bSchool of Textiles and Design, Heriot-Watt University, Scottish Borders Campus, Netherdale, Galashiels, TD1 3HF, UK Feature article Email: [email protected] Society of Dyers and Colourists Received: 18 December 2014; Accepted: 26 June 2015 Polychlorobiphenyls are toxic, bioaccumulative, and persistent chemicals whose intentional manufacture has been banned throughout the developed world. Polychlorobiphenyls may be generated inadvertently during the production of certain pigments, including diarylides. This inadvertent production is allowed under various regulatory schemes, such as the Toxic Substances Control Act in the United States and the Stockholm Convention on Persistent Organic Pollutants. Generally, these regulations require polychlorobiphenyl levels in batches of pigment to be less than certain regulatory limits, usually 50 ppm. A growing body of evidence suggests that the use of pigments is dispersing polychlorobiphenyls throughout the environment. Polychlorobiphenyl congeners associated with pigments have been found throughout the United States in sediments and in surface waters at levels exceeding the prevailing water quality standards. A recent Japanese government study reported measured polychlorobiphenyl concentrations well -
Development of a Transplantable Liver Graft from a Tiny Partial Liver( Dissertation 全文 )
Auxiliary xenotransplantation as an in vivo bioreactor - Title Development of a transplantable liver graft from a tiny partial liver( Dissertation_全文 ) Author(s) Masano, Yuki Citation 京都大学 Issue Date 2020-03-23 URL https://doi.org/10.14989/doctor.r13329 Right https://onlinelibrary.wiley.com/journal/13993089 Type Thesis or Dissertation Textversion ETD Kyoto University Received: 27 November 2018 | Revised: 25 May 2019 | Accepted: 27 June 2019 DOI: 10.1111/xen.12545 ORIGINAL ARTICLE Auxiliary xenotransplantation as an in vivo bioreactor— Development of a transplantable liver graft from a tiny partial liver Yuki Masano1 | Shintaro Yagi1 | Yosuke Miyachi1 | Shinya Okumura1 | Toshimi Kaido1 | Hironori Haga2 | Eiji Kobayashi3 | Shinji Uemoto1 1Division of Hepato‐Biliary‐Pancreatic and Transplant Surgery, Department of Surgery, Abstract Graduate School of Medicine, Kyoto Background: We established a completely novel method of auxiliary xenogeneic University, Kyoto, Japan partial liver transplantation and examined whether liver grafts procured from Syrian 2Department of Diagnostic Pathology, Kyoto University Hospital, Kyoto, Japan hamsters regenerated in nude rats, which were used as in vivo bioreactors. 3Department of Organ Fabrication, Keio Methods: The hamsters and the rats were all males (n = 10). Partial liver grafts from University School of Medicine, Tokyo, Japan hamsters were transplanted into nude rats in an auxiliary manner. We evaluated liver Correspondence graft injury, rejection, and regeneration during 7 days after auxiliary xenogeneic par- Shintaro Yagi, 54 Kawahara‐cho, Shogoin, Sakyo‐ku, Kyoto, 606‐8507, Japan. tial liver transplantation. Email: [email protected]‐u.ac.jp Results: All rats survived until sacrifice on post‐operative day (POD) 1, 3, and 7. HE‐ Funding information staining showed normal at POD1, mild periportal edema, and slight bile duct and Japan Society for the Promotion of Science, venous endothelial inflammation at POD3, and moderate acute cellular rejection at Grant/Award Number: 17H06814 POD7 without parenchymal necrosis. -
Transplantation of Engineered Chimeric Liver with Autologous
ORIGINAL ARTICLE Transplantation of Engineered Chimeric Liver With Autologous Hepatocytes and Xenobiotic Scaffold Toshiyuki Hata, MD,∗† Shinji Uemoto, MD, PhD,∗ Yasuhiro Fujimoto, MD, PhD,∗ Takashi Murakami, MD, PhD,‡ Chise Tateno, PhD,§ Katsutoshi Yoshizato, PhD,§ and Eiji Kobayashi, MD, PhD|| iver transplantation is currently regarded as the most effective Objective: Generation of human livers in pigs might improve the serious treatment for end-stage liver diseases. Because the worldwide shortage of grafts for human liver transplantation, and enable liver trans- L graft shortage remains unresolved,1,2 engineered organs are antici- plantation without the need for deceased or living donors. We developed a pated as alternative grafts to fill the scarcity and ultimately replace chimeric liver (CL) by repopulation of rat hepatocytes in a mouse and suc- those from deceased and living donors. Although regenerative tech- cessfully transplanted it into a rat recipient with vessel reconstruction. This nology has already developed various kinds of regenerative cells and study was designed to investigate the feasibility of CL for supporting the tissues,3,4 they are still insufficient to cure patients with end-stage recipient after auxiliary liver grafting. liver diseases because of the absence of complicated functions and Methods: Hepatocytes from luciferase transgenic or luciferase/LacZ double- limited volume. Therefore, a regenerative liver graft for use as an “or- transgenic rats were transplanted into 20- to 30-day-old urokinase-type gan” is required. To achieve an appropriate 3-dimensional structure plasminogen activator/severe-combined immunodeficiency (uPA/SCID) mice and differentiation to specific tissues in a single organ, application of (n = 40) to create CLs with rat-origin hepatocytes. -
Development of Fluorescent Substrates for Microsomal Epoxide Hydrolase
Analytical Biochemistry 414 (2011) 154–162 Contents lists available at ScienceDirect Analytical Biochemistry journal homepage: www.elsevier.com/locate/yabio Development of fluorescent substrates for microsomal epoxide hydrolase and application to inhibition studies ⇑ Christophe Morisseau a, , Maud Bernay a, Aurélie Escaich a, James R. Sanborn a, Jozsef Lango b, Bruce D. Hammock a a Department of Entomology and Cancer Center, University of California – Davis, Davis, CA 95616, USA b Department of Molecular Biosciences, University of California – Davis, Davis, CA 95616, USA article info abstract Article history: The microsomal epoxide hydrolase (mEH) plays a significant role in the metabolism of numerous Received 18 January 2011 xenobiotics. In addition, it has a potential role in sexual development and bile acid transport, and it is Received in revised form 23 February 2011 associated with a number of diseases such as emphysema, spontaneous abortion, eclampsia, and several Accepted 25 February 2011 forms of cancer. Toward developing chemical tools to study the biological role of mEH, we designed and Available online 1 March 2011 synthesized a series of absorbent and fluorescent substrates. The highest activity for both rat and human mEH was obtained with the fluorescent substrate cyano(6-methoxy-naphthalen-2-yl)methyl glycidyl Keywords: carbonate (11). An in vitro inhibition assay using this substrate ranked a series of known inhibitors sim- Microsomal epoxide hydrolase ilarly to the assay that used radioactive cis-stilbene oxide but with a greater discrimination between Fluorescent substrate a-Cyanocarbonate inhibitors. These results demonstrate that the new fluorescence-based assay is a useful tool for the dis- Xenobiotic metabolism covery of structure–activity relationships among mEH inhibitors. -
Animal Plant Warfare and Secondary Metabolite Evolution
Review Nat. Prod. Bioprospect. 2013, 3, 1–7 DOI 10.1007/s13659-013-0004-0 Animal plant warfare and secondary metabolite evolution a a b a, Steffen WÖLL, Sun Hee KIM, Henry Johannes GRETEN, and Thomas EFFERTH * aDepartment of Pharmaceutical Biology, Institute of Pharmacy and Biochemistry, Johannes Gutenberg-University, Mainz, Germany bInstitute of Biomedical Sciences (ICBAS), University of Porto, Portugal Received 10 January 2013; Accepted 16 February 2013 © The Author(s) 2013. This article is published with open access at Springerlink.com Abstract: The enduring discussion, why plants produce secondary metabolites with pharmacologically and toxicologically active towards mammals traces back to the eminent role of medicinal plants in the millennia-old history of manhood. In recent years, the concept of an animal plant warfare emerged, which focused on the co-evolution between plants and herbivores. As a reaction to herbivory, plants developed mechanical defenses such as thorns and hard shells, which paved the way for adapted animal physiques. Plants evolved further defense systems by producing chemicals that exert toxic effects on the animals that ingest them. As a result of this selective pressure, animals developed special enzymes, e.g. cytochrome P450 monooxigenases (CYP450) that metabolize xenobiotic phytochemicals. As a next step in the evolutionary competition between plants and animals, plants evolved to produce non-toxic pro-drugs, which become toxic only after ingestion by animals through metabolization by enzymes such as CYP450. Because these sequestered evolutionary developments call to mind an arms race, the term animal plant warfare has been coined. The evolutionary competition between plants and animals may help to better understand the modes of action of medicinal plants and to foster the efficient and safe use of phytotherapy nowadays. -
Selection of Endophytic Strains for Enhanced Bacteria-Assisted Phytoremediation of Organic Pollutants Posing a Public Health Hazard
International Journal of Molecular Sciences Review Selection of Endophytic Strains for Enhanced Bacteria-Assisted Phytoremediation of Organic Pollutants Posing a Public Health Hazard Magdalena Anna Kara´s*, Sylwia Wdowiak-Wróbel and Wojciech Sokołowski Department of Genetics and Microbiology, Institute of Biological Sciences, Faculty of Biology and Biotechnology, Maria Curie-Skłodowska University, Akademicka 19, 20-033 Lublin, Poland; [email protected] (S.W.-W.); [email protected] (W.S.) * Correspondence: [email protected]; Tel.: +48-81-537-50-58 Abstract: Anthropogenic activities generate a high quantity of organic pollutants, which have an impact on human health and cause adverse environmental effects. Monitoring of many hazardous contaminations is subject to legal regulations, but some substances such as therapeutic agents, personal care products, hormones, and derivatives of common organic compounds are currently not included in these regulations. Classical methods of removal of organic pollutants involve economically challenging processes. In this regard, remediation with biological agents can be an alternative. For in situ decontamination, the plant-based approach called phytoremediation can be used. However, the main disadvantages of this method are the limited accumulation capacity of plants, sensitivity to the action of high concentrations of hazardous pollutants, and no possibility of using pollutants for growth. To overcome these drawbacks and additionally increase the efficiency of Citation: Kara´s,M.A.; the process, an integrated technology of bacteria-assisted phytoremediation is being used recently. Wdowiak-Wróbel, S.; Sokołowski, W. For the system to work, it is necessary to properly select partners, especially endophytes for specific Selection of Endophytic Strains for Enhanced Bacteria-Assisted plants, based on the knowledge of their metabolic abilities and plant colonization capacity. -
The Evolutionary Significance of Drug Toxicity Over Reward
The evolutionary significance of drug toxicity over reward Edward H. Hagen and Roger J. Sullivan Forthcoming in the Routledge Handbook of Philosophy and Science of Addiction, S. Ahmed and H. Pickard, eds. Drug reward is an evolutionary conundrum. It is not surprising that neural circuitry evolved to reward or reinforce behaviors leading to the essentials of survival and reproduction, like food, water, and sex. Why, though, would these same circuits reward and reinforce the consumption of drugs of abuse, which is often harmful? Here we briefly review the history of reward-based learning, which resulted in a widely accepted evolutionary account of drug reward that we term the hijack hypothesis. We then critique the evolutionary bases of the hijack hypothesis. We conclude by sketching an alternative evolutionary model of human drug use grounded in drug toxicity. Specifically, avoidance of toxic drugs is a compelling hypothesis for the low use of drugs by children and women relative to men. In addition, the regulated ingestion of small quantities of toxins might have provided important medicinal and other benefits to humans and non-human animals over the course of their evolution. Neurobiological theories of drug use are deeply intertwined with those of reward- based learning. The main idea was captured in Thorndike’s law of effect: “Of several responses made to the same situation, those which are accompanied or closely followed by satisfaction to the animal will, other things being equal, be more firmly connected with the situation, so that, when it recurs, they will be more likely to recur" (Thorndike 1911). The related concept of reinforcement refers to the ability of certain stimuli, such as food, to strengthen learned stimulus-response associations. -
Phytoremediation: an Analytical Technique for the Assessment of Biodegradation of Organic Xenobiotic Pollutants: a Review
International Journal of Science and Research (IJSR) ISSN (Online): 2319-7064 Index Copernicus Value (2013): 6.14 | Impact Factor (2013): 4.438 Phytoremediation: An Analytical Technique for the Assessment of Biodegradation of Organic Xenobiotic Pollutants: A Review Adil Sikandar1, Kiran Shehzadi2, Qiraat Arshad3, Komal Munir4 Institute of Life Sciences, Department of Environmental Sciences, Hafiz Hayat Campus, University of Gujrat, Punjab, Pakistan. [email protected] Abstract: Phytoremediation is an emerging environmental friendly approach for remediation of contaminated sites using plants, is the matter of great attention from the past few years. Environmental problems are caused mainly due to accumulation of industrial effluents which form xenobiotants. There is an immediate need to degrade these xenobiotic compounds in an eco-friendly way. Various techniques that have been in use are microbial remediation, phytoremediation and photoremediation. Each having its own ways of degradation, and also have some impacts on the environment. This review examines the developments in the use of transgenic plants for the degradation and phytoremediation of organic xenobiotics. From last many years, considerable progress has been made to increase the efficiency and effectiveness of phytoremediation. Still the technique is not widely in use as it could be for the treatment of contaminated sites. Present studies with transgenic plants indicate that specific degradation capabilities can be added to plants for remediation of pollutants. Keywords: Phytoremediation, Biodegradation, Xenobiotics, Pollutants 1. Introduction Due to man-made activities and natural processes environmental problems are increasing day by day which is a Biodegradation is the total breakdown of the complex and result of increase in population, industrialization, and toxic contaminants into non-toxic elements by the action of urbanization. -
Evidence for the Role of CYP51A and Xenobiotic Detoxification In
International Journal of Molecular Sciences Article Evidence for the Role of CYP51A and Xenobiotic Detoxification in Differential Sensitivity to Azole Fungicides in Boxwood Blight Pathogens Stefanos Stravoravdis 1,2, Robert E. Marra 3 , Nicholas R. LeBlanc 4,5, Jo Anne Crouch 4 and Jonathan P. Hulvey 2,* 1 Department of Microbiology, University of Massachusetts Amherst, Amherst, MA 01003, USA; [email protected] 2 Biology Department, Eastern Connecticut State University, Willimantic, CT 06226, USA 3 Department of Plant Pathology and Ecology, The Connecticut Agricultural Experiment Station, New Haven, CT 06504, USA; [email protected] 4 Mycology and Nematology Genetic Diversity and Biology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, USA; [email protected] (N.R.L.); [email protected] (J.A.C.) 5 ARS Research Participation Program, Oak Ridge Institute for Science and Education, Oak Ridge, TN 37831-0117, USA * Correspondence: [email protected] Abstract: Boxwood blight, a fungal disease of ornamental plants (Buxus spp.), is caused by two sister species, Calonectria pseudonaviculata (Cps) and C. henricotiae (Che). Compared to Cps, Che is documented to display reduced sensitivity to fungicides, including the azole class of antifungals, Citation: Stravoravdis, S.; Marra, which block synthesis of a key fungal membrane component, ergosterol. A previous study reported R.E.; LeBlanc, N.R.; Crouch, J.A.; an ergosterol biosynthesis gene in Cps, CYP51A, to be a pseudogene, and RNA-Seq data confirm that a Hulvey, J.P. Evidence for the Role of functional CYP51A is expressed only in Che. The lack of additional ergosterol biosynthesis genes show- CYP51A and Xenobiotic ing significant differential expression suggests that the functional CYP51A in Che could contribute to Detoxification in Differential reduced azole sensitivity when compared to Cps. -
Immunotoxic Impact of Pharmaceuticals on Harbor Seal (Phoca Vitulina) Leukocytes
Université du Québec Institut National de la Recherche Scientifique Centre Institut Armand-Frappier Immunotoxic Impact of Pharmaceuticals on Harbor Seal (Phoca vitulina) Leukocytes Par Christine Kleinert Thèse présentée pour l’obtention du grade de Philosophiae doctor (Ph.D.) en Biologie Jury d’évaluation Président du jury et Cathy Vaillancourt examinateur interne INRS-Institut Armand-Frappier Examinateur externe André Lajeunesse Dép. de chimie-biochimie et physique Université du Québec à Trois-Rivières Examinateur externe Daniel Martineau Dép. de pathologie et microbiologie Faculté de médecine vétérinaire Université de Montréal Directeur de recherche Michel Fournier INRS-Institut Armand-Frappier Codirecteur de recherche Sylvain De Guise Department of Pathobiology University of Connecticut © Droits réservés de Christine Kleinert, 2017 This thesis is dedicated to the seals of Eastern Canada. I love you dearly. 0 ACKNOWLEDGEMENTS First and foremost, none of this work would have been possible without the financial support of the Institut National de la Recherche Scientifique-Institut Armand-Frappier and the Canada Research Chair in Immunotoxicology (obtained by Prof. Michel Fournier). I was personally also supported by the German Academic Exchange Service (DAAD) and the Fondation Armand- Frappier with one-year scholarships and would like to thank these organizations. Secondly, I would like to thank my supervisors Michel Fournier and Sylvain De Guise. Thank you, Michel, for giving me the freedom to develop my own project, and follow my personal research interest. I was able to grow and develop my independence as a researcher in your laboratory. Thank you also for financing my attendance in nine national and international conferences. The exchange with other researchers in the field was an invaluable asset. -
A Textbook of Modern Toxicology
A TEXTBOOK OF MODERN TOXICOLOGY THIRD EDITION A TEXTBOOK OF MODERN TOXICOLOGY THIRD EDITION Edited by Ernest Hodgson Department of Environmental and Biochemical Toxicology North Carolina State University A JOHN WILEY & SONS, INC., PUBLICATION Copyright 2004 by John Wiley & Sons, Inc. All rights reserved. Published by John Wiley & Sons, Inc., Hoboken, New Jersey. Published simultaneously in Canada. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, scanning, or otherwise, except as permitted under Section 107 or 108 of the 1976 United States Copyright Act, without either the prior written permission of the Publisher, or authorization through payment of the appropriate per-copy fee to the Copyright Clearance Center, Inc., 222 Rosewood Drive, Danvers, MA 01923, 978-750-8400, fax 978-646-8600, or on the web at www.copyright.com. Requests to the Publisher for permission should be addressed to the Permissions Department, John Wiley & Sons, Inc., 111 River Street, Hoboken, NJ 07030, (201) 748-6011, fax (201) 748-6008. Limit of Liability/Disclaimer of Warranty: While the publisher and author have used their best efforts in preparing this book, they make no representations or warranties with respect to the accuracy or completeness of the contents of this book and specifically disclaim any implied warranties of merchantability or fitness for a particular purpose. No warranty may be created or extended by sales representatives or written sales materials. The advice and strategies contained herein may not be suitable for your situation. You should consult with a professional where appropriate.