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Table of Contents January 10-14, 2015 PLANT & ANIMAL GENOME XXIII Town & Country Hotel THE INTERNATIONAL CONFERENCE San Diego, CA ON THE STATUS OF PLANT & ANIMAL GENOME RESEARCH FINAL PROGRAM, ABSTRACT & EXHIBIT GUIDE Organizing Committee Chairman: Stephen R. Heller, NIST (USA) A PLANT CO-ORGANIZERS A ABSTRACT & WEBSITE Dave Clements, Johns Hopkins University, COORDINATORS USA Victoria Carollo Blake, USDA/ARS/WRRC, Catherine Feuillet, Bayer CropScience, USA USA David Grant, USDA/ARS/CICGR, USA J. Perry Gustafson, University of Missouri, Gerard Lazo, USDA/ARS/WRRC, USA (Retired ), USA Jerome P. Miksche, Emeritus Director, A TRAVEL GRANTS COORDINATOR USDA, Plant Genome Program, USA Douglas Bigwood, Diogenix, USA Graham Moore, John Innes Centre, UK Tom Blake, Montana State University Susan R. Wessler, University of California, (Retired), USA Riverside, USA Rod A. Wing, University of Arizona, USA A SPECIAL DUTY COORDINATORS Hans Cheng, USDA/ARS, USA A ANIMAL CO-ORGANIZERS Max Rothschild, Iowa State University, Ernie Bailey, University of Kentucky, USA USA Daniel Ciobanu, University of Nebraska, USA Kwan-Suk Kim, Chungbuk National University, South Korea Stephen White, USDA/ARS, USA Sponsors and Supporters ORGANIZER Scherago International A USDA, Agricultural Research Service 111 Town Square Place A USDA, National Agricultural Library Suite 1208 USDA, National Institute of Food and Agriculture A Jersey City, NJ 07310 A John Innes Centre Phone: (201) 653-4777 Fax: (201) 653-5705 Cover artwork provided by Applied Biosystems. Originally developed for the company’s “Genetic Harvest” Agriculture Seminars, this image Email: [email protected] represents the importance of molecular genetic approaches in plant and animal research. Website: www.intlpag.org Table of Contents Registration and Meeting Schedule 2 Meeting Schedule Table 3 PAG Asia 2015 4 Plenary Talks Schedule 5 Computer Demos Schedule 6-8 Industry Workshops Schedule 9 Scientific Program: Saturday 10-38 Sunday 39-67 Monday 68-78 Tuesday 79-98 Wednesday 99-102 Future Dates 103 Corporate Sponsors 104 Acknowledgements 105 Travel Grant Awards 106-108 Exhibitor Descriptions 109-137 Abstracts Table of Contents 138-141 Abstracts: Workshops 142-204 Posters 205-301 Computer Demos 302-304 Author Index 305-343 Exhibit Hall Floorplan 344 Lower Level Poster Floorplan 345 Notes 346-347 Hotel Property Map 348 Mark Your Calendar For: PAG Asia 2015 – July 13-15, 2015 - Singapore PAG XXIV – January 9-13, 2016 – San Diego Plant & Animal Genome XXIII Registration & Meeting Schedule Registration - ATLAS FOYER Friday January 9 12:00pm - 9:00pm Saturday January 10 7:00am - 8:00pm Sunday January 11 7:00am - 6:00pm Monday January 12 7:00am - 5:00pm Tuesday January 13 7:00am - 3:00pm Wednesday January 14 7:00am - 12:00pm Plenary Session - ATLAS BALLROOM Sunday January 11 6:15pm - 7:00pm Monday January 12 8:15am - 10:00am Tuesday-Wednesday January 13-14 8:00am - 9:30am Poster Access Hours – GRAND EXHIBIT HALL & LOWER LEVEL Saturday January 10 7:00am - 9:00pm Sunday January 11 3:00pm - 8:30pm Monday January 12 7:00am - 9:00pm Tuesday January 13 7:00am - 3:00pm Wednesday January 14 7:00am - 12:00pm ALL POSTERS MUST BE REMOVED BY 12:00PM WEDNESDAY, JANUARY 14. Speaker Ready Room – TERRACE SALON 2 Friday January 9 12:00pm - 8:00pm Saturday - Tuesday January 10-13 7:00am - 8:00pm Wednesday January 14 7:00am - 12:00pm Poster Sessions - GRAND EXHIBIT HALL & LOWER LEVEL Monday (Even Numbers) January 12 10:00am - 11:30am Monday (Odd Numbers) January 12 3:00pm - 4:30pm Exhibit Hours - GRAND EXHIBIT HALL Sunday January 11 (Reception: 7:00-8:30) 3:00pm - 8:30pm Monday January 12 9:30am - 5:00pm Tuesday January 13 9:30am - 3:00pm Computer Room - CALIFORNIA Friday January 9 12:00pm - 10:00pm Saturday - Tuesday January 10-13 6:00am - 10:00pm Wednesday January 14 6:00am - 3:00pm Computer Demonstrations: Computer system demonstrations will be conducted Sunday - Wednesday in the "computer room", located in the California Room, see Computer Demo schedule for times. Welcome Reception - GRAND EXHIBIT HALL & LOWER LEVEL Sunday January 11 7:00pm - 8:30pm Closing Banquet Dinner – GRAND EXHIBIT HALL Wednesday January 14 7:00pm - 12:00am 2 Meeting Schedule Table Friday Saturday Sunday Monday Tuesday Wednesday January 9 January 10 January 11 January 13 January 13 January 14 Poster Session Access 7:00-9:00 3:00-9:00 7:00-9:00 7:00-3:00 7:00-2:00 Registration (Atlas Foyer) 12:00-9:00 7:00-8:00 7:00-6:00 7:00-5:00 7:00-3:00 7:00-12:00 Continental Breakfast 7:00-8:00 7:00-8:00 7:00-8:00 7:00-8:00 7:00-8:00 (Golden Ballroom) Workshops 8:00-10:10 8:00-10:10 Plenary Lectures 8:15-10:00 8:00-9:30 8:00-9:30 (Town & Country) Pioneer DuPont Pioneer DuPont Pioneer DuPont Exhibits 9:30-5:00 9:30-3:00 Closed Coffee Break 9:30-10:30 9:30-10:30 9:30-11:30 9:30-10:30 9:30-10:30 Atlas Foyer Atlas Foyer Exhibit Hall Exhibit Hall Atlas Foyer Poster Session 10:00-11:30 (Grand Exhibit Hall) Even Numbers Workshops 10:20-12:30 10:20-12:30 10:20-12:30 10:20-5:00 Computer Demos (California Room) 10:30-12:40 Lunch 12:30-1:30 12:30-1:30 12:00-12:50 12:30-1:30 12:30-1:30 (Lion Fountain Courtyard & Grand Exhibit Hall) Workshops 1:30-3:40 1:30-3:40 12:50-3:00 1:30-3:40 Computer Demos 1:30-3:50 12:50-3:00 (California Room) Exhibits 3:00-8:30 Reception: 7:00-8:30 Coffee Break 3:00-4:00 3:00-4:00 3:00-5:00 2:00-3:00 Atlas Foyer Atlas Foyer Exhibit Hall Exhibit Hall Poster Session 3:00-4:30 (Grand Exhibit Hall) Odd Numbers Workshops 4:00-6:10 4:00-6:10 6:10-8:20 4:00-6:10 Plenary Lecture 6:15-7:00 (Town & Country) Pioneer DuPont Welcome Reception 7:00-8:30 (Grand Exhibit Hall) Coffee Break 7:00-7:30 Conference Banquet 7:00-12:00 (Grand Exhibit Hall) 3 Plant & Animal Genome Conference ASIA Singapore, July 13-15, 2015 Grand Copthorne Waterfront Hotel, Singapore For two decades the Plant and Animal Genome Conference (PAG) has been dedicated “ CO-CHAIRS to the mission of fostering development of genomic analysis of agricultural products to sustain the world. PAG ASIA will allow us to further expand this mission and to Laszlo Orban, PhD Director of Reproductive Genomics, bring the discussion to more areas of the globe. Strategic Research Program, “ - Stephen Heller, USDA Retired and Chair of PAG Temasek Life Sciences Laboratory, SINGAPORE Stephen Heller, PhD USDA (Retired), and Chair of the Plant and Animal Genome Conference, USA ORGANIZING COMMITTEE EARLY STANDARD REGISTRATION REGISTRATION PLENARY SPEAKERS Susan McCouch, PhD Non-Profit $475 USD $575 USD • XiaoFeng Cao, CHINA Cornell University, USA Through May 4 After May 4 • Jae Yong Han, KOREA Graham Moore, PhD Industry $900 USD $1000 USD • Evans Lagudah, AUSTRALIA Through May 4 After May 4 John Innes Centre, UK • Matt Littlejohn, NEW ZEALAND Student $275 USD $325 USD • Rajeev K. Varshney, INDIA Through May 4 After May 4 Max Rothschild, PhD • Rod A. Wing, USA Iowa State University, USA • Tae-Jin Yang, KOREA Rajeev K. Varshney, PhD VISION OF PAG ASIA PACIFIC • Dabing Zhang, CHINA International Crops Research In response to the expanding global population, worldwide • Shuhong Zhao, CHINA Institutefor the Semi-Arid Tropics climate changes, and dramatic plant and animal genome (ICRISAT), INDIA research occurring in Asia Pacific, the organizers of the PROPOSED WORKSHOP TOPICS Rod A. Wing, PhD Plant and Animal Genome Conference are planning a Abiotic Stress University of Arizona, USA short version of PAG to be held in Singapore. Asian Cattle Qifa Zhang, PhD Barley Huazhong Agricultural University, PAG ASIA MEETING Brassica CHINA PAG Asia will be a 3-day meeting, consisting of plenary talks, Dihaploid Generation & Uses in Breeding workshops, a poster section, and tabletop exhibits. Fruit ABSTRACT COORDINATORS Genome Annotation Resources at the EBI CONTACT US Integrative -omics and informatics Victoria Carollo Blake, PhD International Rice Informatics Consortium We welcome your thoughts regarding this event. Please USDA/ARS/WRRC, USA International Wheat Genome Sequencing send any suggestions of particular speakers or workshops (IWGSC) David Grant, PhD of interest via email to [email protected] Poultry USDA/ARS/CICGR, USA Shrimp Gerard Lazo, PhD FOR MAILING LIST SIGNUP AND EXHIBITING AND SPONSORSHIP Swine USDA/ARS/WRRC, USA OPPORTUNITIES, VISIT www.intlpagasia.org Translational Genomics for Agriculture IN PARTNERSHIP WITH: 111 Town Square Place, Suite 1208 Jersey City, NJ 07310, USA Phone: +1 201-653-4777 MEDIA PARTNERS: Fax: +1 201-653-5705 [email protected] 4 www.intlpagasia.org Plenary Talks Schedule Sponsored by: Pioneer DuPont Sunday, January 11, 2015 6:15pm - 7:00pm - TOWN & COUNTRY BALLROOM Philip Bourne, National Institutes of Health “NIH as a Digital Enterprise – Implications for PAG” Monday, January 12, 2015 8:00am - 8:45am - TOWN & COUNTRY BALLROOM Beth Shapiro, University of California Santa Cruz “The evolutionary consequences of interspecies hybridization: insights from ancient and modern bear genomes” 8:45am - 9:30am - TOWN & COUNTRY BALLROOM Trey Ideker, UC San Diego “Interpreting genome variants and mutations using a unified human genetic network” Tuesday, January 13, 2015 8:00am - 8:45am - TOWN & COUNTRY BALLROOM Xuemei Chen, University of California “Plant microRNAs: biogenesis, degradation, and modes of action” 8:45am - 9:30am - TOWN & COUNTRY BALLROOM Mike E Goddard, University of Melbourne “The Evolution and Genetic Architecture of Complex Traits” Wednesday, January 14, 2015 8:00am - 8:45am - TOWN & COUNTRY BALLROOM Giles Oldroyd, John Innes Centre “Engineering Nitrogen-Fixing Symbiotic Associations in Cereals”
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