A PLANT CO-ORGANIZERS A ABSTRACT & WEBSITE Dave Clements, Johns Hopkins University, COORDINATORS USA Victoria Carollo Blake, USDA/ARS/WRRC, Catherine Feuillet, Bayer CropScience, USA USA David Grant, USDA/ARS/CICGR, USA J. Perry Gustafson, University of Missouri, Gerard Lazo, USDA/ARS/WRRC, USA (Retired ), USA Jerome P. Miksche, Emeritus Director, A TRAVEL GRANTS COORDINATOR USDA, Plant Genome Program, USA Douglas Bigwood, Diogenix, USA Graham Moore, John Innes Centre, UK Tom Blake, Montana State University Susan R. Wessler, University of California, (Retired), USA Riverside, USA Rod A. Wing, University of Arizona, USA A SPECIAL DUTY COORDINATORS Hans Cheng, USDA/ARS, USA A ANIMAL CO-ORGANIZERS Max Rothschild, Iowa State University, Ernie Bailey, University of Kentucky, USA USA Daniel Ciobanu, University of Nebraska, USA Kwan-Suk Kim, Chungbuk National University, South Korea Stephen White, USDA/ARS, USA

Sponsors and Supporters ORGANIZER Scherago International A USDA, Agricultural Research Service 111 Town Square Place A USDA, National Agricultural Library Suite 1208 USDA, National Institute of Food and Agriculture A Jersey City, NJ 07310

A John Innes Centre Phone: (201) 653-4777

Fax: (201) 653-5705 Cover artwork provided by Applied Biosystems. Originally developed for the company’s “Genetic Harvest” Agriculture Seminars, this image Email: [email protected] represents the importance of molecular genetic approaches in plant and animal research. Website: www.intlpag.org Table of Contents

Registration and Meeting Schedule 2

Meeting Schedule Table 3

PAG Asia 2015 4

Plenary Talks Schedule 5

Computer Demos Schedule 6-8

Industry Workshops Schedule 9

Scientific Program: Saturday 10-38 Sunday 39-67 Monday 68-78 Tuesday 79-98 Wednesday 99-102

Future Dates 103

Corporate Sponsors 104

Acknowledgements 105

Travel Grant Awards 106-108

Exhibitor Descriptions 109-137

Abstracts Table of Contents 138-141

Abstracts: Workshops 142-204 Posters 205-301 Computer Demos 302-304

Author Index 305-343

Exhibit Hall Floorplan 344

Lower Level Poster Floorplan 345

Notes 346-347

Hotel Property Map 348

Mark Your Calendar For:

PAG Asia 2015 – July 13-15, 2015 - Singapore PAG XXIV – January 9-13, 2016 – San Diego

Plant & Animal Genome XXIII Registration & Meeting Schedule

Registration - ATLAS FOYER Friday January 9 12:00pm - 9:00pm Saturday January 10 7:00am - 8:00pm Sunday January 11 7:00am - 6:00pm Monday January 12 7:00am - 5:00pm Tuesday January 13 7:00am - 3:00pm Wednesday January 14 7:00am - 12:00pm

Plenary Session - ATLAS BALLROOM Sunday January 11 6:15pm - 7:00pm Monday January 12 8:15am - 10:00am Tuesday-Wednesday January 13-14 8:00am - 9:30am

Poster Access Hours – GRAND EXHIBIT HALL & LOWER LEVEL Saturday January 10 7:00am - 9:00pm Sunday January 11 3:00pm - 8:30pm Monday January 12 7:00am - 9:00pm Tuesday January 13 7:00am - 3:00pm Wednesday January 14 7:00am - 12:00pm

ALL POSTERS MUST BE REMOVED BY 12:00PM WEDNESDAY, JANUARY 14.

Speaker Ready Room – TERRACE SALON 2 Friday January 9 12:00pm - 8:00pm Saturday - Tuesday January 10-13 7:00am - 8:00pm Wednesday January 14 7:00am - 12:00pm

Poster Sessions - GRAND EXHIBIT HALL & LOWER LEVEL Monday (Even Numbers) January 12 10:00am - 11:30am Monday (Odd Numbers) January 12 3:00pm - 4:30pm

Exhibit Hours - GRAND EXHIBIT HALL Sunday January 11 (Reception: 7:00-8:30) 3:00pm - 8:30pm Monday January 12 9:30am - 5:00pm Tuesday January 13 9:30am - 3:00pm

Computer Room - CALIFORNIA Friday January 9 12:00pm - 10:00pm Saturday - Tuesday January 10-13 6:00am - 10:00pm Wednesday January 14 6:00am - 3:00pm Computer Demonstrations: Computer system demonstrations will be conducted Sunday - Wednesday in the "computer room", located in the California Room, see Computer Demo schedule for times.

Welcome Reception - GRAND EXHIBIT HALL & LOWER LEVEL Sunday January 11 7:00pm - 8:30pm

Closing Banquet Dinner – GRAND EXHIBIT HALL Wednesday January 14 7:00pm - 12:00am

Meeting Schedule Table

Friday Saturday Sunday Monday Tuesday Wednesday January 9 January 10 January 11 January 13 January 13 January 14

Poster Session Access 7:00-9:00 3:00-9:00 7:00-9:00 7:00-3:00 7:00-2:00

Registration (Atlas Foyer) 12:00-9:00 7:00-8:00 7:00-6:00 7:00-5:00 7:00-3:00 7:00-12:00

Continental Breakfast 7:00-8:00 7:00-8:00 7:00-8:00 7:00-8:00 7:00-8:00 (Golden Ballroom)

Workshops 8:00-10:10 8:00-10:10

Plenary Lectures 8:15-10:00 8:00-9:30 8:00-9:30 (Town & Country) Pioneer DuPont Pioneer DuPont Pioneer DuPont

Exhibits 9:30-5:00 9:30-3:00 Closed

Coffee Break 9:30-10:30 9:30-10:30 9:30-11:30 9:30-10:30 9:30-10:30 Atlas Foyer Atlas Foyer Exhibit Hall Exhibit Hall Atlas Foyer

Poster Session 10:00-11:30 (Grand Exhibit Hall) Even Numbers

Workshops 10:20-12:30 10:20-12:30 10:20-12:30 10:20-5:00

Computer Demos (California Room) 10:30-12:40

Lunch 12:30-1:30 12:30-1:30 12:00-12:50 12:30-1:30 12:30-1:30 (Lion Fountain Courtyard & Grand Exhibit Hall)

Workshops 1:30-3:40 1:30-3:40 12:50-3:00 1:30-3:40

Computer Demos 1:30-3:50 12:50-3:00 (California Room)

Exhibits 3:00-8:30 Reception: 7:00-8:30

Coffee Break 3:00-4:00 3:00-4:00 3:00-5:00 2:00-3:00 Atlas Foyer Atlas Foyer Exhibit Hall Exhibit Hall

Poster Session 3:00-4:30 (Grand Exhibit Hall) Odd Numbers

Workshops 4:00-6:10 4:00-6:10 6:10-8:20 4:00-6:10

Plenary Lecture 6:15-7:00 (Town & Country) Pioneer DuPont

Welcome Reception 7:00-8:30 (Grand Exhibit Hall)

Coffee Break 7:00-7:30

Conference Banquet 7:00-12:00 (Grand Exhibit Hall)

3 Plant & Animal Genome Conference ASIA Singapore, July 13-15, 2015

Grand Copthorne Waterfront Hotel, Singapore For two decades the Plant and Animal Genome Conference (PAG) has been dedicated “ CO-CHAIRS to the mission of fostering development of genomic analysis of agricultural products to sustain the world. PAG ASIA will allow us to further expand this mission and to Laszlo Orban, PhD Director of Reproductive Genomics, bring the discussion to more areas of the globe. Strategic Research Program, “ - Stephen Heller, USDA Retired and Chair of PAG Temasek Life Sciences Laboratory, SINGAPORE

Stephen Heller, PhD USDA (Retired), and Chair of the Plant and Animal Genome Conference, USA

ORGANIZING COMMITTEE EARLY STANDARD REGISTRATION REGISTRATION PLENARY SPEAKERS Susan McCouch, PhD Non-Profit $475 USD $575 USD • XiaoFeng Cao, CHINA Cornell University, USA Through May 4 After May 4 • Jae Yong Han, KOREA Graham Moore, PhD Industry $900 USD $1000 USD • Evans Lagudah, AUSTRALIA Through May 4 After May 4 John Innes Centre, UK • Matt Littlejohn, NEW ZEALAND Student $275 USD $325 USD • Rajeev K. Varshney, INDIA Through May 4 After May 4 Max Rothschild, PhD • Rod A. Wing, USA Iowa State University, USA • Tae-Jin Yang, KOREA

Rajeev K. Varshney, PhD VISION OF PAG ASIA PACIFIC • Dabing Zhang, CHINA International Crops Research In response to the expanding global population, worldwide • Shuhong Zhao, CHINA Institutefor the Semi-Arid Tropics climate changes, and dramatic plant and animal genome (ICRISAT), INDIA research occurring in Asia Pacific, the organizers of the PROPOSED WORKSHOP TOPICS Rod A. Wing, PhD Plant and Animal Genome Conference are planning a Abiotic Stress University of Arizona, USA short version of PAG to be held in Singapore. Asian Cattle

Qifa Zhang, PhD Barley Huazhong Agricultural University, PAG ASIA MEETING Brassica CHINA PAG Asia will be a 3-day meeting, consisting of plenary talks, Dihaploid Generation & Uses in Breeding workshops, a poster section, and tabletop exhibits. Fruit

ABSTRACT COORDINATORS Genome Annotation Resources at the EBI CONTACT US Integrative -omics and informatics Victoria Carollo Blake, PhD International Rice Informatics Consortium We welcome your thoughts regarding this event. Please USDA/ARS/WRRC, USA International Wheat Genome Sequencing send any suggestions of particular speakers or workshops (IWGSC) David Grant, PhD of interest via email to [email protected] Poultry USDA/ARS/CICGR, USA Shrimp Gerard Lazo, PhD for mailing list signup and exhibiting and sponsorship Swine USDA/ARS/WRRC, USA opportunities, visit www.intlpagasia.org Translational Genomics for Agriculture

IN PARTNERSHIP WITH:

111 Town Square Place, Suite 1208 Jersey City, NJ 07310, USA Phone: +1 201-653-4777 MEDIA PARTNERS: Fax: +1 201-653-5705 [email protected] 4 www.intlpagasia.org Plenary Talks Schedule Sponsored by: Pioneer DuPont

Sunday, January 11, 2015 6:15pm - 7:00pm - TOWN & COUNTRY BALLROOM

Philip Bourne, National Institutes of Health “NIH as a Digital Enterprise – Implications for PAG”

Monday, January 12, 2015 8:00am - 8:45am - TOWN & COUNTRY BALLROOM

Beth Shapiro, University of California Santa Cruz “The evolutionary consequences of interspecies hybridization: insights from ancient and modern bear genomes”

8:45am - 9:30am - TOWN & COUNTRY BALLROOM Trey Ideker, UC San Diego “Interpreting genome variants and mutations using a unified human genetic network”

Tuesday, January 13, 2015 8:00am - 8:45am - TOWN & COUNTRY BALLROOM

Xuemei Chen, University of California “Plant microRNAs: biogenesis, degradation, and modes of action”

8:45am - 9:30am - TOWN & COUNTRY BALLROOM Mike E Goddard, University of Melbourne “The Evolution and Genetic Architecture of Complex Traits”

Wednesday, January 14, 2015 8:00am - 8:45am - TOWN & COUNTRY BALLROOM

Giles Oldroyd, John Innes Centre “Engineering Nitrogen-Fixing Symbiotic Associations in Cereals”

8:45am - 9:30am - TOWN & COUNTRY BALLROOM

Christina Warinner, University of Oklahoma “Reconstructing Our Ancient Microbial Self”

5 Computer Demos Schedule

Saturday - January 10, 2015

1:30pm - 3:40pm Computer Demo 1 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH) 1:30pm Gary Saunders, European Bioinformatics Institute (EMBL-EBI) "The European Variation Archive at EMBL-EBI" (C01) 1:50pm Nathan A Dunn, Berkeley Bioinformatics Open-source Projects "WebApollo 20: A Scalable, Distributed Sequence Annotation Editor" (C02) 2:10pm Jodi L Humann, Washington State University "GenSAS: A Web-Based Platform for Automated and Manual Curation of Genomic Sequence" (C03) 2:30pm Kim D Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH) "Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tools" (C04) 2:50pm Emily Perry, European Bioinformatics Institute (EMBL-EBI) "Analysing SNP Consequences on Genes and Proteins with Ensembl's Variant Effect Predictor" (C05) 3:10pm Hugues Roest Crollius, Ecole Normale Supérieure, Institute of Biology (IBENS) "Genomicus: Fast and Intuitive Comparative Genomics in Plant and Animal Genome" (C06) 3:30pm Justin T Page, Brigham Young University "BamBam: Genome Sequence Analysis Tools for Biologists" (C07)

Monday - January 12, 2015

12:50pm - 3:00pm Computer Demo 2 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH) 12:50pm Toby Hunt, Wellcome Trust Sanger Institute "New Tools for Manual Genome Annotation in Eukaryotes: Zmap/Otterlace and Vega" (C08) 1:10pm Victoria Carollo Blake, USDA ARS WRRC "The Triticeae Toolbox (T3): From the Ground Up" (C09)

6 Computer Demos Schedule

1:30pm Carson M Andorf, USDA-ARS "The Reinvention of MaizeGDB" (C10) 1:50pm Andrew D Farmer, National Center for Genome Resources "Methods for Collecting, Integrating, and Displaying Complex Genetic Data, Using the Legume Information System and PeanutBase" (C11) 2:10pm Hidemasa Bono, Database Center for Life Science "Facilitating the Use of Next-Gen Sequence Data for Data-Driven Biology" (C12) 2:30pm Sook Jung, Washington State University "How to Use GDR, the Genome Database for Rosaceae" (C13) 2:45pm Jing Yu, Washington State University "CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research" (C14)

Tuesday - January 13, 2015

10:30am - 12:40pm Computer Demo 3 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH) 10:30am Delphine Steinbach, INRA - URGI "GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data" (C15) 10:45am Xinbin Dai, The Samuel Roberts Noble Foundation "HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks" (C16) 11:00am Thomas Letellier, INRA - URGI "Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B" (C17) 11:15am Hans Vasquez-Gross, Department of Plant Sciences, University of California, Davis "Using the Wheat Tilling Database to Search Mutants of Interest" (C18) 11:30am Emily Grau, UC Davis "TreeGenes and CartograTree: Tools for Forest Tree Genomics" (C19) 11:45am Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation "LegumeIP - an Integrative Platform to Study Gene Function and Genome Evolution in Legumes: Year 3 Update" (C20)

7 Computer Demos Schedule

12:00pm Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH) "National Center for Biotechnology Information Resources for Plant Genomics" (C21) 12:15pm Nirav Merchant, iPlant Collaborative/University of Arizona "Manage Complex Computations Using Clouds and Containers in iPlant Atmosphere" (C22) 12:30pm Jason R Miller, J Craig Venter Institute "Using the Arabidopsis Information Portal" (C23)

Wednesday - January 14, 2015

10:30am - 12:40pm Computer Demo 4 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH) 10:30am Jorge A Duitama Castellanos, International Center for Tropical Agriculture (CIAT) "Bioinformatic Analysis of Genotype By Sequencing (GBS) Data with NGSEP" (C24) 10:45am Michael T Lovci, University of California, San Diego "Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis" (C25) 11:00am Ana Conesa, Centro Investigacion Principe Felipe "The STATegra NGS Experiment Management System" (C26) 11:15am Carrie L Ganote, Indiana University ""Roll" Your Own Genomics Cluster with Rocks and the XSEDE- Compatible Basic Cluster" (C27) 11:30am Meng Huang, Washington State University "BioGPU: A High Performance Computing Tool for Genome-Wide Association Studies" (C28) 11:45am Priya Ranjan, University of Tennessee, Knoxville "The DOE Systems Biology Knowledgebase (KBase): Progress Toward a System for Inference and Modeling of Biological Function in Plants" (C29) 12:00pm Takako Mochizuki, Genome Informatics Laboratory, NIG, ROIS "DNA Polymorphism Database from New-Generation Sequence Read Archive and Analytical Workflow" (C30)

8 Industry Workshop Schedule

Affymetrix Monday, Jan 12 12:50 pm - 3:00 pm Pacific Salon 3 BGI Monday, Jan 12 6:10 pm - 8:20 pm San Diego BioNano Genomics Tuesday, Jan 13 1:30 pm - 3:40 pm Sunrise DNAstar Monday, Jan 12 6:10 pm - 8:20 pm Royal Palm Salon 4,5,6 Envirologix Inc. Monday, Jan 12 6:10 pm - 8:20 pm Pacific Salon 1 Fluidigm Tuesday, Jan 13 1:30 pm - 3:40 pm Sunset GeneSeek Monday, Jan 12 12:50 pm - 3:00 pm Pacific Salon 2 IBM Tuesday, Jan 13 1:30 pm - 3:40 pm Golden West Illimina Tuesday, Jan 13 4:00 pm - 6:10 pm Golden West Kapa Biosystems Tuesday, Jan 13 1:30 pm - 3:40 pm Towne Keygene Monday, Jan 12 12:50 pm - 3:00 pm Royal Palm Salon 1,2,3 Kyazma Monday, Jan 12 12:50 pm - 3:00 pm Pacific Salon 4-5 LGC 1 Monday, Jan 12 6:10 pm - 8:20 pm Pacific Salon 2 LGC 2 Tuesday, Jan 13 1:30 pm - 3:40 pm Pacific Salon 2 Lucigen Tuesday, Jan 13 1:30 pm - 3:40 pm Pacific Salon 1 Maverix Biomics Monday, Jan 12 6:10 pm - 8:20 pm Royal Palm Salon 1,2,3 New England Biolabs Monday, Jan 12 12:50 pm - 3:00 pm Pacific Salon 1 NRGene Tuesday, Jan 13 10:30 am - 12:40 pm Pacific Salon 4-5 Pacific Bioscciences Tuesday, Jan 13 1:30 pm - 3:40 pm San Diego Plant Phenotyping Tuesday, Jan 13 4:00 pm - 6:10 pm Esquire Qiagen Tuesday, Jan 13 1:30 pm - 3:40 pm Royal Palm Salon 1,2,3 Roche Diagnostics Monday, Jan 12 12:50 pm - 3:00 pm Golden Ballroom Thermo Fisher Scientific (Formerly Life Monday, Jan 12 12:50 pm - 3:00 pm Golden West Technologies™) Ubiquitome Monday, Jan 12 6:10 pm - 8:20 pm Pacific Salon 3

9 Saturday - January 10, 2015

7:00am - 8:00am Continental Breakfast - GOLDEN BALLROOM

7:00am - 8:00pm Registration - ATLAS FOYER

8:00am - 10:10am The Analysis and Role of the Microbiome - SUNRISE Chair: Francesco Strozzi, Parco Tecnologico Padano 8:00am Introductory Remarks 8:10am C Titus Brown, Michigan State University "How Well Can We Reconstruct Metagenome Content? Thoughts and Data on Metagenome Assembly" (W724) 8:40am Itai Sharon, University of California, Berkeley "Accurate, Multi-Kb Illumina Truseq Synthetic Reads Resolve Complex Microbial Populations and Detect Rare Microorganisms" (W725) 9:10am Mick Watson, The Roslin Institute and R(D)SVS, University of Edinburgh "The Microbial Proteome Associated with High Methane Emissions in Cattle Determined By Shotgun Metagenomic Sequencing" (W726) 9:40am Timothy PL Smith, USDA-ARS, US Meat Animal Research Center "Characterization of the Bovine Nasopharyngeal Microbiome in the Context of Respiratory Disease and Treatment" (W727)

8:00am - 10:10am Arthropod Genomics - ESQUIRE Organizer: Wayne Hunter, USDA Agricultural Research Service and Blake Bextine, University of Texas-Tyler 8:00am Welcoming Remarks 8:05am Gerard R Lazo, USDA Agricultural Research Service, WRRC "Bacterial Pathogen Genomics: Liberibacters from Around the World" (W044) 8:20am Wayne Hunter, USDA Agricultural Research Service "Psyllid RNAi" (W045) 8:40am Lucy R Stewart, USDA-ARS "Identification of candidate virus response and vector competence genes in the virus- transmitting leafhopper, Graminella nigrifrons" 9:00am Blake Bextine, University of Texas-Tyler "Regulation of Viral Infections for Insect Pest Managment" (W046) 9:20am Jan E Leach, Colorado State University "The Phytobiome Initiative" (W048) 9:30am Susan Brown, Kansas State University, KSU Bioinformatics Center "The i5k Perspective" (W049) 9:40am Kim C Worley, Baylor College of Medicine "Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center" (W047) 10:05am Discussion

10 Saturday - January 10, 2015

8:00am - 10:10am CSSA: Translational Genomics - PACIFIC SALON 1 Organizer: Marilyn Warburton, USDA ARS Corn Host Plant Resistance Research Unit and Paxton Payton, USDA-ARS 8:00am Paul Gepts, University of California "Determinacy in Common Bean: Duplications, Redundancies, and Multiple Domestications" (W198) 8:20am Celeste Marie Falcon, University of Minnesota "Evaluating Genomic Selection in the First Two Cycles of a Winter Barley Breeding Program" (W199) 8:40am Mehul Bhakta, Horticultural Sciences Department "A Good Day to Flower: Environmental Dependent Genetic Control of Flowering Time in Common Bean" (W200) 9:00am Shelby L Ellison, University of Wisconsin-Madison "Orange Is the New Yellow: Cracking the Genetic Code Controlling Beta-Carotene Accumulation in Carrot" (W201) 9:20am Vikas Belamkar, Iowa State University "Mining Plant Collections Using Phenotyping and High-Throughput Sequencing for Accelerated Crop Improvement - a Case Study of the Native American Bean Apios americana" (W202) 9:40am Jianbing Yan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University "Genome Wide Association Study of Metabolites in Maize" (W203)

8:00am - 10:10am Ecological Genomics - ROYAL PALM SALON 1-2 Organizer: Katrina Dlugosch, University of Arizona and Nolan Kane, University of Colorado 8:00am Joseph Jenkins, University of Southampton "Biochar Alters the Soil Microbiome: Results from Amplicon Surveys of Three European Field Sites" 8:20am Jacqueline Batley, University of Western Australia "Patterns of Gene Loss in Population Genomic Data - Identifying Disposable Genes" 8:40am Brittany Barker, University of Arizona "Ecological Genomics of Native and Invading Yellow Starthistle and Its Biocontrol Insect" 9:00am Nolan Kane, University of Colorado "Genomics of Adaptation and Diversificaiton in Cannabis" 9:20am Vikram Chhatre, University of Vermont "Understanding Climate Adaptation through Genome-Wide Patterns of Differentiation and Local Selection in Populus balsamifera How Important Are Peripheral Populations?"

11 Saturday - January 10, 2015

8:00am - 10:10am Evolution of Genome Size - GOLDEN WEST Organizer: Daniel G Peterson, Mississippi State University 8:00am David A Ray, Texas Tech University "Small RNA-Transposable Elements Interactions in Animal Genome Evolution" (W242) 8:25am Andrew H Paterson, Plant Genome Mapping Laboratory, University of Georgia "Concerted Evolution of Subgenomes in Polyploids" (W243) 8:50am Joshua A Udall, Brigham Young University "TBD" (W244) 9:15am Christopher A Saski, Clemson University Genomics Institute "TBD" (W245) 9:40am Xiu-Qing Li, Agriculture and Agri-Food Canada "Examining the Coevolution of Genome Sizes, GC contents, and Gene Direction" (W246)

8:00am - 10:10am Forage, Feedstocks & Turf - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: German Spangenberg, Biosciences Research Division, DPI Reed E Barker, Grass Genomic Testing, Inc 8:00am E Charles Brummer, University of California, Davis "GBS-Based Yield Selection in Alfalfa: Now We're Getting SomewhereAren't We?" (W261) 8:20am Hans D Daetwyler, Department of Environment and Primary Industries "Genomic Selection in Perennial Ryegrass: Results from Empirical and Simulation Studies" (W262) 8:40am Carolyn Young, The Samuel Roberts Noble Foundation "Understanding Tall Fescue Endophytes through Genotypic and Chemotypic Diversity" (W263) 9:00am Qingyi Yu, Texas A&M AgriLife Research "Sequence-Tagged High-Density Genetic Maps of Zoysia japonica Provide New Insights into Chloridoideae Genome Evolution" (W264) 9:20am Roland Kölliker, Agroscope Institute for Sustainability Sciences "Exploration and Exploitation of Disease Resistance in Ryegrass" (W265) 9:40am Toshihiko Yamada, Hokkaido University "The Role of Fructan for Cold Stress Tolerance in Grasses" (W266)

12 Saturday - January 10, 2015

8:00am - 10:10am International Wheat Genome Sequencing Consortium (IWGSC) - TOWN AND COUNTRY Organizers: Kellye Eversole, IWGSC and Jan Dvorak, University of California 8:00am Jan Dvorak, Department of Plant Sciences, University of California "BAC-Based Sequencing of the Aegilops tauschii Genome" (W406) 8:20am Sukhwinder Singh, CIMMYT "A High Density GBS Map of Bread Wheat and Its Application for Genetic Improvement of the Crop" (W407) 8:40am Jorge Dubcovsky, University of California Davis "Exome Sequencing of Wheat Mutant Populations Opens a New Era for Wheat Functional Genetics" (W408) 9:10am Fiona Doohan, University College Dublin "Use of the Wheat Genome to Expedite the Identification of Disease Resistance Genes" (W409) 9:30am Yang Yen, South Dakota State University "Susceptibility to Fusarium Head Blight By Wheat Is Regulated By Silencing RNAs of Pathogen Origin" (W410) 9:50am Ricardo H Ramirez-Gonzalez, The Genome Analysis Centre "RNA-Seq Bulked Segregant Analysis Enables the Identification of High-Resolution Genetic Markers for Breeding in Hexaploid Wheat" (W411)

8:00am - 10:10am Legumes - ROYAL PALM SALON 5-6 Organizers: Maria J Monteros, The Samuel Roberts Noble Foundation and Jamie A O'Rourke, USDA-ARS 8:00am Mitchell R Lucas, University of California "Introgression of a Rare Haplotype from Southeastern Africa to Breed Cowpeas with Larger Seeds" (W435) 8:20am Sally Mackenzie, Center for Plant Science Innovation, University of Nebraska, "The MSH1 System for Inducing Epigenetic Variation in Legume Systems" (W436) 8:40am Lars Kamphuis, University of Western Australia, Institute of Agriculture & CSIRO Agriculture Flagship "The Narrow-Leafed Lupin Genome Assembly, Transcriptome Sequencing of Different Tissue Types and Generation of Gene-Based Molecular Markers" (W437) 9:00am Marc Libault, University of Oklahoma "Role of Membrane Rafts during Legume Nodulation" (W438) 9:20am Damien Formey, Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico "Genome-Wide Identification of the Phaseolus vulgaris sRNAome using Small RNA and Degradome Sequencing" (W439) 9:40am Venu (Kal) Kalavacharla, Delaware State University "Integrated Epigenomic and Transcriptomic Profiling of the Resistance Response of Common Bean (Phaseolus vulgaris) to Bean Rust (Uromyces appendiculatus)" (W440)

13 Saturday - January 10, 2015

8:00am - 10:10am Speciation Genomics - TOWNE Organizer: Richard Buggs, Queen Mary University of London 8:00am Christophe Plomion, INRA "Sequencing of the Pedunculate Oak Genome and Contribution of Gene Expression and Single Nucleotide Polymorphisms to Speciation in the European White Oak Species Complex" (W733) 8:20am Annaliese S Mason, University of Queensland "The Fate of Chromosomes and Alleles in Brassica Allohexaploids" (W734) 8:40am Christian Lexer, University of Fribourg "Speciation Genomics in Plants: Divergence Continuum and Beyond" (W735) 9:00am Jenny Boughman, Michigan State University "TBA" (W736)

8:00am - 10:10am Systems Biology and Ontologies - PACIFIC SALON 2 Organizers: Pankaj Jaiswal, Oregon State University, Laurel Cooper, Oregon State University and Sushma Naithani, Oregon State University 8:00am Molly Megraw, Oregon State University "Transcription Start Site Sequencing Strongly Informs Gene Regulatory Network Inference" (W781) 8:00am Welcoming Remarks 8:20am Aravind Venkatesan, Institut de biologie Computationnelle "Facilitating Efficient Knowledge Management and Discovery in the Agronomic Sciences" (W778) 8:40am Sarah Lennon, New Phytologist "New Phytologist and the Plant Ontology: Working Together to Enhance Journal Content" (W779) 9:00am Michael Kramer, Department of Medicine, University of California, San Diego "Inferring Gene Ontologies from Molecular Networks" (W780) 9:20am Aaron Fait, Ben-Gurion University "Metabolomics and Analysis of Quantitative Traits: State of the Art, Challenges and Future Perspectives" (W782) 9:40am Jer-Young Lin, University of California "The Interplay of DNA Methylation, Histone Modification and Gene Activity in Soybean Seed Development" (W783) 10:05am Concluding Remarks

14 Saturday - January 10, 2015

8:00am - 12:40pm Cattle/Swine - SAN DIEGO Organizers: Wansheng Liu, Penn State University and Gary A Rohrer, USDA, ARS, USMARC 8:00am Parag Chitnis, National Institute of Food and Agriculture "NIFA’s Role in Catalyzing Transformative Research in Animal Genomics" 8:15am Jeremy F Taylor, Division of Animal Sciences, University of Missouri "Identification of Causal Variants Using Next Generation Sequencing Data" (W134) 8:55am Tad S Sonstegard, Animal Genomics and Improvement Laboratory, USDA-ARS "Discovery of Convergent Adaptations that Alleviate Heat Stress in Taurine Cattle" (W135) 9:35am Miguel Perez-Enciso, Centre for Research in Agrigenomics (CRAG) and ICREA "Diachrony and Synchrony When Studying Pig Genomes" (W136) 10:15am Break 10:40am Naomi Duijvesteijn, Topigs Norsvin "GWAS for Direct and Indirect Effect on Androstenone" (W137) 11:20am James M Reecy, Department of Animal Science, Iowa State University "Development and Utilization of Bioinformatic Tools in Livestock Genomics" (W138) 12:00pm Sabarinath Subramaniam, Bio5 Institute, University of Arizona "Management and Visualization of Ianimal Quantitative Data Using iPlant and EPIC- CoGe" (W139)

15 Saturday - January 10, 2015

8:00am - 12:40pm Fruit/Nuts - PACIFIC SALON 3 Organizer: Herman Silva, Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile 8:00am Herman Silva, Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile Welcome Remarks 8:02am Dorrie Main, Washington State University "GDR: A Community Database for Rosaceae Genomics, Genetics and Breeding Research" (W286) 8:21am Kevin M Folta, University of Florida ""Coupling Gene to Function in Strawberry (Fragaria spp)" (W287) 8:40am Béatrice Denoyes, INRA UMR 1332 - FRANCE "Combined Genetic, Genomic and Physiological Approaches to Characterize Flowering in Fragaria" (W288) 8:59am Maria A Moya-León, Institute of Biological Sciences - University of Talca "Molecular Events Taking Place during Ripening of Fragaria chiloensis Fruit" (W289) 9:18am Ignazio Verde, Consiglio per la Ricerca e la sperimentazione in Agricoltura - Fruit Tree Research Center "The Peach v20 Release: An Improved Genome Sequence for Bridging the Gap Between Genomics and Breeding in Prunus" (W290) 9:37am Break

10:07am Hanny Elsadr, University of Guelph "Refining the Genomic Region Containing a Major Locus Controlling Fruit Maturity in Peach" (W291) 10:26am Fabrizio Costa, Fondazione E Mach "Apple Breeding and Postharvest in the Post-Genomic Era" (W292) 10:45am Basilio Carrasco, Pontificia Universidad Católica de Chile "Development of a Saturated Linkage Map in Prunus salicina L Using Genotyping by Sequencing (GBS)" (W293) 11:04am Elena Hilario, The New Zealand Institute for Plant & Food Research Limited "Parallel Sequencing of Barcoded BAC Clones to Assist and Validate Kiwifruit Genome Assemblies" (W294) 11:23am Pedro J Martínez-García, Department of Plant Sciences University of California "The Genome Sequence of Walnut (Juglans regia L) cv “Chandler” (W295) 11:42am Ryutaro Tao, Graduate School of Agriculture, Kyoto University "Sexuality of Persimmons" (W296) 12:01pm José Quero-Garcia, INRA, UMR 1332 Biologie du Fruit et Pathologie "Genomic Studies on a Highly Complex Trait in Sweet Cherry: Tolerance to Rain- Induced Fruit Cracking" (W297) 12:20pm Amy Iezzoni, Michigan State University "RosBREED: Combining Disease Resistance with Horticultural Quality in New Rosaceous Cultivars" (W298)

16 Saturday - January 10, 2015

8:00am - 12:40pm Pine Genome Reference Sequence - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Pat McGuire, University of California Chair: David Neale, Dept Plant Sciences University of California

8:00am Welcoming Remarks 8:15am Kristian Stevens, University of California, Davis "A Reference Genome Sequence for Sugar Pine" (W508) 8:45am Jill Wegrzyn, Department of Ecology and Evolutionary Biology - University of Connecticut "Sugar Pine Annotation" (W509) 9:15am Aleksey Zimin, Institute for Physical Science and Technology, University of Maryland "Loblolly Pine Genome v20" (W510) 9:45am Break 10:15am Dorrie Main, Washington State University "GenSAS" (W511) 10:45am Andrew J Eckert, Virginia Commonwealth University "Genomics and Reciprocal Illumination: The Study of Local Adaptation Across an Understudied Clade of Pines" (W512) 11:15am Sally N Aitken, University of British Columbia "The Alluring Simplicity and Complex Reality of Adaptation to Climate in Lodgepole Pine" (W513)

17 Saturday - January 10, 2015

8:00am - 6:10pm Aquaculture - ROYAL PALM SALON 3-4 Organizer: Roger L Vallejo, USDA-ARS-NCCCWA

8:00am Welcome Remarks 8:05am Geoff Waldbieser, USDA - Agricultural Research Service "A Genome Sequence Assembly for Channel Catfish, Ictalurus punctatus" 8:25am Agnieszka Stadnik, Simon Fraser University "Yeast Two-Hybridization Analyses of Atlantic Salmon sdY Interactions" 8:45am Alexandre R Caetano, Embrapa Recursos Genéticos e Biotecnologia "De Novo Genome Assembly of the South American Freshwater Fish Tambaqui (Colossoma macropomum)" 9:05am Ailu Chen, The Fish Molecular Genetics and Biotechnology Laboratory "Allele-Specific Expression in Interspecific Catfish Hybrids" 9:25am Rune Andreassen, Oslo and Akershus University College of Applied Sciences "Tissue and Disease Specific Expression of miRNA Genes in Atlantic Salmon (Salmo salar)" 9:45am Carlos M Rodriguez Lopez, University of Adelaide "Can Epigenetic Regulation of Sex Ratios Explain Natural Variation in Self- Fertilization Rates?" 10:05am Break 10:20am Theodorus M Meuwissen, Norwegian University of Life Sciences "The Application of Genomic Selection in Aquaculture" 11:10am Weiwei You, Xiamen University "New Insights in the Differences Between Triploid and Diploid Fujian Oyster By Integrated Gene Expression Profiling and Proteomic Analyses" 11:30am Orly Eshel, Volcani Research Center "Detection of Genes and microRNA Involved in Sex Determination in Nile Tilapia (Oreochromis niloticus)" 11:50am Cristian Araneda, Universidad de Chile, Depto de Produccion Animal "Contrasting Patterns of Neutral and Adaptive Genetic Variation of Chilean Blue Mussel (Mytilus chilensis) Due to Local Adaptation and Aquaculture" 12:10pm Lunch Break 1:20pm Ross D Houston, The Roslin Institute and R(D)SVS, University of Edinburgh "Application of Genomics to Selective Breeding of Atlantic Salmon" (W037) 2:00pm Bam D Paneru, Middle Tennessee State University "RNA-Seq Identifies SNPs Associated with Muscle Yield and Quality in Rainbow Trout" 2:20pm Xin Geng, Auburn University "GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of Related Genes within Major QTLs for Columnaris Disease Resistance" 2:40pm Roger L Vallejo, USDA-ARS-NCCCWA "Accuracy of Genomic Prediction for BCWD Resistance in Rainbow trout Using 24K RAD-SNP and 49K SNP and Bayes B/C and Single-Step GBLUP Methods"

18 Saturday - January 10, 2015

3:00pm PM Break 3:20pm Jim Parsons, Troutlodge, Inc "Selective Breeding in Commercial North American Rainbow Trout Populations" (W038) 4:00pm Catherine Purcell, Southwest Fisheries Science Center, National Marine Fisheries Service "Stepping Toward Sustainable Aquaculture: Genomic Resource Development to Help Guide Broodstock Selection and Culture Practices for the California Yellowtail, Seriola lalandi" 4:20pm Hao Ma, West Virginia University "Identification of Mitochondrial microRNAs Related to Egg Deterioration Caused By Post-Ovulatory Aging in Rainbow Trout" 4:40pm Yniv Palti, USDA-ARS-NCCCWA "The Development and Characterization of a 57K SNP Chip for Rainbow Trout" 5:00pm James M Reecy, Department of Animal Science, Iowa State University "NRSP-8 Bioinformatics Coordinator" 5:10pm John Liu, Auburn University "Business Meeting"

8:00am - 6:10pm Poultry 1 - SUNSET Organizers: Douglas D Rhoads, University of Arkansas and Fiona McCarthy, University of Arizona

8:00am Douglas D Rhoads, University of Arkansas "Opening Remarks and Introductions" (W581) 8:20am Huanmin Zhang, USDA ARS Avian Disease & Oncology Laboratory "Vaccine Induced Differential Expressions of Mirnas at Cytolytic Stage in Chickens Resistant or Susceptible to Marek's Disease" (W582) 8:40am Hans Cheng, USDA, ARS, ADOL "Association of Specific Microbes with Marek’s Disease Progression" (W583) 9:00am Mary Delany, University of California "MDV Vaccine Serotype and Chicken Host Genome Interactions" (W584) 9:20am Fionna McCarthy, University of Arizona "Towards Understanding Gene Expression in Red Jungle Fowl" (W585) 9:40am Susan J Lamont, Iowa State University "Genomics of Response to Heat Stress in Chickens" (W586) 10:00am Break 10:20am Huaijun Zhou, University of California "Genetic Architecture of Heat Stress and Disease Resistance to Newcastle Disease Virus in Chickens" (W588) 10:40am Ignacy Misztal, University of Georgia "Influence of Selection on Genomic Accuracies of Males and Females Using Male, Female or Joint Genotypes" (W589)

19 Saturday - January 10, 2015

11:00am Samuel E Aggrey, University of Georgia "Association of the Transsulfuration Pathway in Feather Follicle and Subcutaneous Tissue Development in Broiler Chickens" (W590) 11:20am Behnam Abasht, Department of Animal Science, University of Delaware "RNA-Seq Analysis of Wooden Breast Disease: Characterizing a Novel Myopathy in Commercial Chickens through Differential Gene Expression" (W591) 11:40am C Titus Brown, Michigan State University "Adventures in Improving the Chicken Reference Genome and Transcriptome" (W592) 12:00pm Douglas D Rhoads, University of Arkansas "Lunch Break" (W593) 1:20pm Eric A Wong, Virginia Tech "Transcriptome Profiling of the Chicken Yolk Sac during Late Embryogenesis" (W594) 1:40pm Kent M Reed, University of Minnesota "Differential Transcriptome Response to Aflatoxin in the Turkey" (W595) 2:00pm Doris Bachtrog, University of California Berkeley "Sex Chromosomes Demonstrate Complex Evolutionary Trajectories Across Bird Taxa" (W596) 2:40pm Break 3:20pm David P Froman, Oregon State University "Identification of Quantitative Trait Loci Associated with Low Sperm Mobility in the Chicken" (W598) 3:40pm Carl J Schmidt, University of Delaware "TBD" (W599) 4:00pm Deepali Vasoya, Roslin Institute, University of Edinburgh "Viral/Host Gene Expression Profiles in Lymphoid and Feather Follicle Epithelial (FFE) Cells Infected with Marek’s Disease Virus (MDV)”" (W600) 4:20pm Marcia M Miller, Beckman Research Institute, City of Hope "Specialized Antigen Presentation By Yf MHC Class I-like Molecules in Poultry Health" (W601) 4:40pm James M Reecy, Department of Animal Science, Iowa State University "Update on NRSP8 Bioinformatics Activities" (W602) 4:55pm Douglas D Rhoads, University of Arkansas "Grad Student 3 Minute Talks" (W603)

9:30am - 10:30am Coffee Break - ATLAS FOYER

20 Saturday - January 10, 2015

10:30am - 12:40pm Brassicas - ROYAL PALM SALON 5-6 Organizers: Ian Bancroft, Department of Biology, University of York and J Chris Pires, University of Missouri

10:30am Hiroyasu Kitashiba, Graduate School of Agricultural Science, Tohoku University "Assignment of Draft Sequences of the Radish (Raphanus sativus L) Genome to a High-Density Linkage Map" (W081) 10:50am Kathleen Greenham, Dartmouth College "Analysis of Circadian Transcriptional Networks in Brassica Rapa Elucidates Temporally Regulated Abiotic Stress Modules" (W082) 11:10am Yong Pyo Lim, Chungnam National University "Genomic-Assisted Marker Development of Brassica Crop for Agronomic Improvement" (W083) 11:30am Upendra Kumar Devisetty, University of California "Development and Application of Genomic Resources in Brassica rapa" (W084) 11:50am Boulos Chalhoub, URGV-INRA "Homeologous Exchange Crosstalks between Coresident Subgenomes of the Post- Neolithic Brassica napus Allopolyploid" (W085) 12:10pm Xiaoming Wu, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences "Genome-Wide Association Study of the Complex Traits in Amphidiploid Rapeseed (Brassica napus L)" (W086)

10:30am - 12:40pm Buffalo genome - ROYAL PALM SALON 1-2 Organizer: John Williams, Fondazione Parco Tecnologico Padano 10:30am John Williams, Fondazione Parco Tecnologico Padano "Status of the Buffalo Genome Project” (W087) 10:50am Derek Bickhart, Animal Genomics and Improvement Laboratory, USDA-ARS "Comparison of CNVs in Buffalo with Other Species" (W088) 11:10am Ezequiel Luis Nicolazzi, Fondazione Parco Tecnologico Padano "Using the 90K Buffalo SNP Array" (W089) 11:30am Paolo Ajmone Marsan, Inst of Zootechnics, Università Cattolica del S Cuore "Diversity and Origins of Domestic Buffalo" (W090) 11:50am Sara Albarella, Department of Veterinary Medicine and Animal Production, University Federico II - Naples - Italy "Selection and Congenital Disease in Mediterranean Italian River Buffalo" (W091) 12:10pm Jeremy F Taylor, Division of Animal Sciences, University of Missouri "Using Sequence Data to Localise Developmental Mutations" (W092)

21 Saturday - January 10, 2015

10:30am - 12:40pm DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom - CALIFORNIA Organizer: Dave Micklos, iPlant Collaborative, DNA Learning Center

10:30am Dave Micklos, DNA Learning Center "Simplifying Genome Annotation and Examples of Large-Scale Projects in DNA Barcoding (Red and Blue Lines)" (W231) 11:00am James Burnette, University of California, Riverside "Transposable Elements, Gene Discovery, and DNA Barcoding (Yellow and Blue Lines)" (W232) 11:30am Irina Makarevitch, Hamline University "Bringing Authentic Genomics Research into the Classroom: Analysis of Maize Stress Response (Green Line)" (W233) 12:00pm Judy A Brusslan, California State University, Long Beach "Large Dataset Analysis for Undergraduates: Discovery Environment, RNA-Seq and Leaf Senescence in Arabidopsis thaliana (Green Line)" (W234)

10:30am - 12:40pm Engineering NUE - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: David A Lightfoot, Southern Illinois University and Ashok Shrawat, Monsanto

10:30am Margaret Simons, The Pennsylvania State University "Assessing Nitrogen Metabolism Using Genome-Scale Models in Maize" (W235) 10:50am Sharon L Doty, University of Washington "Increasing Biomass Production with Reduced Inputs in Non-Legume Crops Using N- Fixing Endophytes of Poplar" (W236) 11:10am Adel Zayed, Monsanto Company "Nitrogen Utilization and Remobilization in Arabidopsis Under Nitrogen Depletion" (W237) 11:30am Anne-Sophie Bouchet, INRA IGEPP "Deciphering the Genetic Control of Yield and Yield Components of Winter Oilseed Rape (Brassica napus L) Grown Under Nitrogen Constraints with Combined Linkage and Association Analyses" (W238) 11:50am Christian Hermans, Université Libre de Bruxelles "Nitrogen Influence on Lateral Root Development of Brassicaceae Species" (W239)

22 Saturday - January 10, 2015

10:30am - 12:40pm Functional Genomics of C4 and CAM photosynthesis - TOWNE Organizers: Thomas P Brutnell, Donald Danforth Plant Science Center and John C Cushman, University of Nevada, Reno

10:30am Xinguang Zhu, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences "Evolution of C4 Photosynthesis: The Role of Low CO2 Environment" (W305) 10:50am Andreas PM Weber, Heinrich Heine Universität Düsseldorf "Metabolic Transport Functions in C4 Photosynthesis" (W306) 11:10am Thomas P Brutnell, Donald Danforth Plant Science Center "A Comparative Genomics Approach to Understanding C4 Photosynthetic Differentiation in the Grasses" (W307) 11:30am Jerry Jenkins, DOE Joint Genome Institute "Genome Assembly of the Obligate Crassulacean Acid Metabolism (CAM) Species Kalanchoe laxiflora" (W308) 11:50am Paul E Abraham, BioEnergy Science Center, Oak Ridge National Laboratory "Proteomic Studies in Monocot and Eudicot Crassulacean Acid Metabolism (CAM) Species" (W309) 12:10pm Won Cheol Yim, Department of Biochemistry and Molecular Biology, University of Nevada, Reno "Transcriptome and Genome Assemblies of the Common Ice Plant, a Halophytic, Facultative Crassulacean Acid Metabolism (CAM) Species" (W310)

10:30am - 12:40pm Genomics of Genebanks - PACIFIC SALON 1 Organizers: Clare Coyne, Washington State University and Chris Richards, USDA ARS National Center for Genetics Resources

10:30am Christopher M Richards, USDA-ARS "Overview of the Workshop" (W354) 10:35am Noelle A Barkley, USDA-ARS, PGRCU "The Complex Tale of the High Oleic Acid Trait in Peanut (Arachis hypogaea L)" (W355) 11:05am Junli Zhang, University of California Davis "A Genome-Wide Association Study of Resistance to Stripe Rust (Puccinia striiformis f sp tritici) in a Worldwide Collection” (W356) 11:35am Eric J von Wettberg, Florida International University "Genomics of Wild Cicer of Turkey" (W357) 12:05pm Peter Wenzl, Global Crop Diversity Trust "Diversity Seek (DivSeek): Towards a Concerted Effort to Harness the Genetic Potential of the World’s Genebanks"

23 Saturday - January 10, 2015

10:30am - 12:40pm Grasslands (Lolium Genome Initiative) - ESQUIRE Organizers: Iain Donnison, Aberystwyth University and Reed E Barker, Grass Genomic Testing, Inc

10:30am Michael Casler, USDA-ARS "Genetic Improvement of Switchgrass: The Brave New World of Genomic Selection" (W389) 10:50am Leif Skot, IBERS "Machine Learning for Genomic Prediction in Lolium perenne" (W390) 11:10am Tom Ruttink, ILVO-Plant Sciences Unit-Growth and Development "Probing Genome Diversity in Natural and Breeding Populations of Lolium perenne" (W391) 11:30am Adrian Czaban, Aarhus University "Comparative Genome Analysis of Lolium-Festuca Complex Species" (W392) 11:50am Dario Fè, Molecular Biology and Genetics, Aarhus University "Genomic Prediction in a Breeding Program of Perennial Ryegrass" (W393) 12:10pm Manfred Klaas, Teagasc Crops Environment and Land Use Programme "Uncovering the Water Stress Response of Reed Canary Grass (Phalaris arundinacea) from Differential Expression of the Reference Transcriptome" (W394)

10:30am - 12:40pm Triticeae 1 - GOLDEN BALLROOM Organizers: Mark E Sorrells, Cornell University , Wolfgang Spielmeyer, CSIRO Plant Industry and Nils Stein, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)

10:30am Nestor Kippes, University of California Davis "Positional Cloning of the Wheat Vernalization Gene VRN-D4 Reveals the Origin of Spring Growth Habit in Ancient Hexaploid Wheats from India" (W810) 10:50am Chao Li, National Institute of Agrobiological Sciences "Identification of Cer-Zv, a Gene Responsible for Cutin Formation in the Barley Leaf Cuticle" (W811) 11:10am Ahmad Mohammad I Alqudah, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) "Genetic Analysis of Pre-Anthesis Phase Duration in Spring Barley (Hordeum vulgare L)" (W812) 11:30am Carine Rizzolatti, Syngenta "Molecular Characterization of the Cytoplasmic Male Sterility System Underlying the Breeding and Production of HyvidoTM Hybrids in Barley" (W813) 11:50am Colin Hiebert, Agriculture and Agri-Food Canada "Mapping Stem Rust Resistance on Chromosome 3BL in Thatcher That Interacts with Lr34" (W814) 12:10pm Delphine Fleury, ACPFG, University of Adelaide "Genetic Dissection of Mechanisms Underlying Drought Tolerance in Wheat" (W815)

24 Saturday - January 10, 2015

10:30am - 12:40pm Managing Crop Phenotype Data - TOWN AND COUNTRY Organizers: David E Matthews, USDA-ARS, Cornell University and Jean-Luc Jannink, USDA-ARS

10:30am Marko Karkkainen, International Rice Research Institute "Breeding4Rice: Breeding Information Management System in a Process Organization" (W441) 10:50am Clay Birkett, USDA-ARS "Application Programming Interface (API) for Plant Breeding Data and Software Tools" (W442) 11:10am Grzegorz Uszynski, Diversity Arrays Technology Pty Ltd (DArT PL) "The KDDArT Knowledge Discovery System" (W443) 11:30am Graham McLaren, Generation Challenge Programme "Managing Phenotypic Data through the IBP's Breeding Management System" (W444) 11:50am Cyril Pommier, INRA - URGI "Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpISEphesis and Bii" (W445) 12:10pm Yaniv Semel, Phenome Networks "Crop Data in Unity"

10:30am - 12:40pm Mutation Screening - GOLDEN WEST Organizers: Guenter Kahl, University of Frankfurt am Main, Frankfurt and Abdelhafid Bendahmane, INRA

10:30am Stig U Andersen, Aarhus University "The Legume Non-Transgenic LORE1 Mutant Collection" (W446) 10:50am Anand Patel, Bioinformatics and Systems Biology Program, Moores Cancer Center, Dept Computer Science, UCSD "Single Molecule Sequencing of Somatic Structural Variations" (W447) 11:10am Silvio Salvi, DipSA - University of Bologna "A Barley Root Mutants Collection for Fast Forward Genetics" (W448) 11:30am Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC "A Soybean Cyst Nematode Resistance Gene Points to a New Mechanism of Plant Resistance to Pathogens" (W449) 11:50am Magdy Mahfouz, Biological and Environmental Sciences and Engineering Division "Viral-Mediated Genome Editing and Regulation in Plants Using CRISPR/Cas System" (W450) 12:10pm Michiel van Eijk, KeyGene "High Throughput Sequence-Based Screening with Keypoint Mutation Breeding" (W451)

25 Saturday - January 10, 2015

10:30am - 12:40pm Plant Genome Engineering - SUNRISE Organizers: Dan Voytas, University of Minnesota and Robert M Stupar, University of Minnesota

12:00am Dan Voytas, University of Minnesota "Strategies for the Targeted Modification of Plant Genomes" (W537) 10:30am Caixia Gao, Institute of Genetics and Developmental Biology, CAS "Developing Genome Editing Technologies for Crop Improvement" (W538) 10:50am Holger Puchta, Karlsruhe Institute of Technology "The CRISPR/Cas System can be used as Nuclease for in planta Gene Targeting and as Paired Nickases for Directed Mutagenesis in Arabidopsis Resulting in Heritable Progeny" (W539) 11:10am Feng Zhang, Cellectis plant sciences "Highly Efficient Genome Editing in Crops" (W540) 11:30am Sandeep Kumar, Dow AgroSciences "A Modular Gene Targeting System for Sequential Transgene Stacking in Plants" (W541)

12:30pm - 1:30pm Lunch (Vouchers Provided) - LION FOUNTAIN COURTYARD

1:30pm - 3:40pm Allele Mining - PACIFIC SALON 2 Organizer: Angela M Baldo, USDA ARS DBNRRC

1:30pm Fred E Gouker, Cornell University "Dissection of Genotypic and Phenotypic Variation in Shrub Willow (Salix purpurea)" (W008) 1:51pm Anu Chitikineni, ICRISAT "A First Generation Hapmap of Chickpea for Mining Superior Alleles for Crop Improvement" (W009) 2:12pm Georgia C Eizenga, USDA-ARS Dale Bumpers National Rice Research Center "The Secrets of Cold Tolerance at the Seedling Stage and Heading in Rice As Revealed By Association Mapping" (W010) 2:33pm Xueyan Wang, University of Arkansas Rice Research and Extension Center "Association Studies Unravel a Link Between Yield Components and Disease Resistance of Rice" (W011) 2:54pm Katie Hyma, Genomic Diversity Facility, Cornell University "HetMappS: Heterozygous Mapping Strategy for High Resolution Genotyping-by- Sequencing Markers" (W012) 3:15pm Elena Hilario, The New Zealand Institute for Plant & Food Research Limited "Random Tagging GBS in Kiwifruit" (W013)

26 Saturday - January 10, 2015

1:30pm - 3:40pm Triticeae 2 - GOLDEN BALLROOM Organizers: Nils Stein, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) , Mark E Sorrells, Cornell University and Wolfgang Spielmeyer, CSIRO Plant Industry

1:30pm Robbie Waugh, The James Hutton Institute "Genomic Diversity, Adaptation and Selection in Barley" (W816) 1:50pm Alan H Schulman, LUKE & University of Helsinki "A 43 Gb Genome Map of the Barley Genome As a Tool for Assembly" (W817) 2:10pm Brian J Steffenson, University of Minnesota "Call of the Wild: Exploiting Hordeum vulgare spp spontaneum for Barley Improvement" (W818) 2:30pm Laura Rossini, Universty of Milan - DiSAA "The Photoperiod Response Gene Ppd-H1 Affects Leaf Size and Phyllochron in Barley" (W819) 2:50pm Thomas Wicker, University of Zurich "Analysis of Highly Repetitive BAC Clones Reveals Rapid Evolution of highly variable Gene Clusters in Triticeae" (W820) 3:10pm Moritz Joest, Institute of Biochemistry and Biology, University of Potsdam "Broad Leaves, Narrow Leaves, or No Leaves at All - Genetic Dissection of Barley Leaf Growth" (W821)

1:30pm - 3:40pm Citrus Genome - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Fred G Gmitter, University of Florida, IFAS-CREC

1:30pm Javier Terol, Centro de Genomica, IVIA "An RNA-Seq Based Reference Transcriptome for Citrus" (W140) 1:50pm Marco A Takita, Centro de Citricultura Sylvio Moreira, IAC "Exploiting the Citrus Genome Towards Understanding Genetic Traits Related to Fruit Quality and Disease Resistance" (W141) 2:10pm Sook Jung, Washington State University "Citrus Genome DB Updates" (W142) 2:30pm Tokurou Shimizu, NARO Institute of Fruit Tree Science "Verifying the Mandarin Breeding: Lessons from Parentage Analysis of Citrus Varieties" (W143) 2:50pm Manuel Talon, Centro de Genomica, IVIA "Comparative Analysis of the Chloroplast Genome of the Genus Citrus" (W144)

27 Saturday - January 10, 2015

1:30pm - 3:40pm Cool Season Legumes - PACIFIC SALON 1 Organizer: Rebecca McGee, Washington State University

1:30pm Weidong Chen, USDA-ARS Washington State University "Fungal Phytotoxins and Ascochyta Blights of Cool Season Food Legumes" (W186) 1:50pm William L Holdsworth, Cornell University "Genotyping by Sequencing Reveals the Genetic Diversity of the USDA Pisum Diversity Collection" (W187) 2:10pm Kirstin Bett, University of Saskatchewan "Len Gen: The International Lentil Genome Sequencing Project" (W188) 2:30pm Mohammed-Amin Madoui, CEA "The International Pea Genome Sequencing Project: Sequencing and Assembly Progresses Updates" (W189) 2:50pm R Varma Penmetsa, University of California Davis "Back To The Future: Prospecting Wild Crop Relatives For Crop Improvement Of Chickpea" (W190) 3:10pm Rachit K Saxena, ICRISAT "Comprehensive Genome Sequencing Analysis of 292 Cajanus Accessions" (W191)

1:30pm - 3:40pm Genomic Selection and Genome-Wide Association Studies - TOWN AND COUNTRY Organizers: Jianming Yu, Iowa State University and Dorian J Garrick, Iowa State University

1:30pm Welcome Remarks 1:35pm Shizhong Xu, University of California "Predicting Yield of Hybrid Rice Using Omics Data" (W349) 2:00pm Jose Fernando Garcia, Sao Paulo State University / UNESP "Advances on Bos indicus (Nellore) Genomics: Integrating Genomic Selection and GWAS Information" (W350) 2:25pm Tim Beissinger, University of California Davis "Selection Mapping: A Powerful Tool for Population Improvement" (W351) 2:45pm Jose Crossa, CIMMYT "New Developments in Plant Genomic Prediction Models" (W352) 3:10pm Ken Dodds, Invermay Agricultural Centre, AgResearch Ltd "Genomic Selection in New Zealand Sheep Using a Mixed-breed Training Set" (W353) 3:35pm Concluding Remarks

28 Saturday - January 10, 2015

1:30pm - 3:40pm Maize - GOLDEN WEST Organizers: Patrick S Schnable, Department of Agronomy, Iowa State University and Jeffrey L Bennetzen, University of Georgia

1:30pm Patrick S Schnable, Department of Agronomy, Iowa State University Welcome Remarks 1:40pm Nathan M Springer, University of Minnesota "Maize is not Arabidopsis" 2:10pm James C Schnable, University of Nebraska-Lincoln "The Real Genes of Maize: Marrowing the Target Space for Genetic and Genomic Studies" 2:40pm Andrea L Eveland, Donald Danforth Plant Science Center "Regulatory Networks Controlling Inflorescence Architecture Traits in Maize" 3:10pm Michael Scanlon, Cornell University "The Maize Ligule: How to Draw a Line on a Leaf"

1:30pm - 3:40pm Plant Interactions with Pests and Pathogens - SUNRISE Organizer: Christie Williams, USDA-ARS at Purdue University 1:30pm Benjamin F Matthews, USDA-ARS Soybean Genomics Lab "Designing Disease Resistant Plants" (W542) 1:50pm Jorge Dubcovsky, University of California Davis "Yr36 Confers Partial Resistance to Wheat Stripe Rust By a Novel Mechanism" (W543) 2:10pm Jacqueline Batley, University of Western Australia "Blackleg Resistance Gene Identification in Brassica napus: A Pan Genome Approach" (W544) 2:30pm Madan K Bhattacharyya, Iowa State University "Folic Acid Plays a Critical Role in Nonhost Resistance" (W545) 2:50pm Chan Ho Park, The Ohio State University "APIP10 Is a Novel E3 Ligase That Functionally Connects the Fungal Effector AvrPiz-t to Its NLR Receptor Piz-t in Rice" (W546) 3:10pm Roger Wise, USDA-ARS, Iowa State University "Broadly Conserved Fungal Effector BEC1019 Suppresses Host Cell Death and Enhances Virulence of Powdery Mildew in Barley (Hordeum vulgare L)" (W547)

29 Saturday - January 10, 2015

1:30pm - 3:40pm Somatic Genome - PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Xiu-Qing Li, Agriculture and Agri-Food Canada

1:30pm Anne B Britt, University of California "Cell-Type-Specific Responses to DNA Damage" (W678) 1:55pm Linda Hanley-Bowdoin, NC State University "A Spatiotemporal Analysis of Plant DNA Replication in Developing Root Tips" (W679) 2:20pm Isabelle M Henry, Plant Biology and Genome Center, UC Davis "Strategies for Mutation Discovery and Characterization for Plant Functional Genomics" (W680) 2:45pm Stephanie A Bryant, University of Kentucky "Molecular Correlates of Programmed DNA Elimination" (W681) 3:10pm Xiu-Qing Li, Agriculture and Agri-Food Canada "Evolution of RNA Polyadenylation Sites" (W682)

1:30pm - 3:40pm Sugar Beet - TOWNE Organizer: Imad Eujayl, USDA-ARS, Northwest Irrigation and Soils Res Lab

1:30pm Chiara Broccanello, DAFNAE, Università degli Studi di Padova "Association Between SNP183 and Bolting Tendency in Sugar Beet" (W742) 1:50pm Kazunori Taguchi, Hokkaido Agricultural Research Center "Molecular Dissection and Marker Assisted Selection to Cercospora Leaf Spot in Sugar Beet" (W743) 2:10pm Subhashini Srinivasan, Institute of Bioinformatics and Applied Biotechnology "A Comparative Genomic Study of the C3 Sugar Beet and the C4 Edible Grain Amaranth" (W744) 2:30pm Imad Eujayl, USDA-ARS, Northwest Irrigation and Soils Res Lab "Gene Expression Profiling of Resistance and Susceptibility to Beet Curly Top Virus in Sugarbeet" (W745) 2:50pm Belinda Townsend, Rothamsted Research "Storage Root Developmental Milestones Resolved Using Complementary -Omics Approaches" (W746) 3:10pm Glenda Willems, SESVanderHave Belgium "Towards a Sugar Beet Reference Genome Using Optical Mapping" (W747)

30 Saturday - January 10, 2015

1:30pm - 3:40pm Computer Demo 1 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University and Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH)

1:30pm Gary Saunders, European Bioinformatics Institute (EMBL-EBI) "The European Variation Archive at EMBL-EBI" (C01) 1:50pm Nathan A Dunn, Berkeley Bioinformatics Open-source Projects "WebApollo 20: A Scalable, Distributed Sequence Annotation Editor" (C02) 2:10pm Jodi L Humann, Washington State University "GenSAS: A Web-Based Platform for Automated and Manual Curation of Genomic Sequence" (C03) 2:30pm Kim D Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH) "Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tools" (C04) 2:50pm Emily Perry, European Bioinformatics Institute (EMBL-EBI) "Analysing SNP Consequences on Genes and Proteins with Ensembl's Variant Effect Predictor" (C05) 3:10pm Hugues Roest Crollius, Ecole Normale Supérieure, Institute of Biology (IBENS) "Genomicus: Fast and Intuitive Comparative Genomics in Plant and Animal Genome" (C06) 3:30pm Justin T Page, Brigham Young University "BamBam: Genome Sequence Analysis Tools for Biologists" (C07)

1:30pm - 3:40pm Plant Molecular Breeding - PACIFIC SALON 3 Organizer: Jinguo Hu, USDA ARS Chair: Yunbi Xu, CIMMYT/CAAS Co-Chair: Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing

1:30pm Yunbi Xu, CIMMYT/CAAS Welcome Remarks 1:35pm Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing "The Post-Genomics Era Rice Breeding: Perspectives and Practices" (W711) 1:55pm Susanne Dreisigacker, CIMMYT "Progress and Perspectives in CIMMYT Wheat Molecular Breeding" (W712) 2:15pm Jianbing Yan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University "Genome Wide Association Study in Maize" (W713) 2:35pm Nicole Bachleda, Institute of Plant Breeding, Genetics, and Genomics, University of Georgia "Identifying FATB1a Deletion That Causes Reduced Palmitic Acid Content in Soybean N87-2122-4 to Develop a Diagnostic Marker for a High Throughput Marker- Assisted Selection" (W714) 2:55pm Jauhar Ali, PBGB, International Rice Research Institute "Green Super Rice Breeding Technology" (W715) 3:15pm Manish Roorkiwal, ICRISAT "Can Genomic Selection Help Chickpea Breeding to Develop Superior Lines with Higher Yield Under Drought Stress?" (W716) 3:35pm Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing "Closing Remarks" (W717) 31 Saturday - January 10, 2015

1:30pm - 6:10pm Cattle/Sheep/Goat 1 - SAN DIEGO Organizer: Wansheng Liu, Department of Animal Science, Penn State University

1:30pm Brian Dalrymple, CSIRO Agriculture Flagship "Analysis of the Sheep Genome, with a Focus on the Evolution and Function of the Rumen and Implications for Methane Production by Ruminants" (W116) 1:50pm Chad Dechow, The Pennsylvania State University "Genome Wide Methylation Patterns in Holstein Leukocytes" (W117) 2:10pm Gwenola Tosser-Klopp, INRA "Update on the International Goat Genome Consortium Projects " (W118) 2:30pm Christopher A Bidwell, Purdue University "Muscle Hypertrophy and Polar Overdominance in Callipyge Sheep" (W119) 2:50pm Break 3:20pm Kim C Worley, Baylor College of Medicine "Improving the Reference Genomes for the Sheep and the Cow" (W120) 3:40pm Christopher M Seabury, Texas A&M University "New Perspectives from Two Large NIFA Funded Grants: An Overview of GWAS Results" (W121) 4:00pm George E Liu, Animal Genomics and Improvement Laboratory, ARS-USDA "Whole-Genome Sequencing Reveals the Diversity and Population-Genetic Properties of Cattle CNVs" (W122) 4:20pm NRSP-8 Station Reports

1:30pm - 6:10pm Equine 1 - ROYAL PALM SALON 5-6 Organizers: Scott V Dindot, Texas A & M University and Theodore S Kalbfleisch, University of Louisville

1:30pm Scott V Dindot, Texas A&M University Welcome Remarks 1:35pm Ludovic Orlando, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen "Prehistoric genomes reveal the genetic foundation and cost of horse domestication" 2:15pm Terje Raudsepp, Texas A&M University "Sequencing, De Novo Assembly and Functional Analysis of the Male Specific Region of the Horse Y Chromosom" 2:35pm Elizabeth A Staiger, Cornell University "Genome wide associations of temperament variation in the Tennessee Walking Horse" 2:55pm Felipe Avila, Department of Veterinary Population Medicine, University of Minnesota "Genomic Signatures of Selection in the American Quarter Horse" 3:15pm Scott V Dindot, Texas A&M University "Break" 3:25pm Danika Bannasch, University of California Davis "SERPINB11 Mutation Associated with Novel Hoof Specific Phenotype in Connemara Ponies" 3:45pm Sharmila Ghosh, Texas A&M University "Involvement of CNVs in Equine Cryptorchidism"

32 Saturday - January 10, 2015

4:05pm Carrie J Finno, University of California Davis "CYP7A1 is Significantly Upregulated in Spinal Cord from Horses Affected with Equine Neuroaxonal Dystrophy (NAD)" 4:25pm Lauren Ashley Bright, Department of Clinical Sciences "The recurrent airway obstruction restricted lung transcriptome identifies molecular signatures of airway hyperresponsiveness and neutrophillic inflammation" 4:45pm Raffaella Teixeira, University of Minnesota "Skeletal Muscle Gene Expression Profile in Type 1 Polysaccharide Storage Myopathy" 5:05pm Rebecca L Tallmadge, Department of Clinical Sciences "Assessing neonatal responses to vaccination at the protein and gene level: Ig and more Ig" 5:25pm Scott V Dindot, Texas A&M University "Discussion and Station Reports"

1:30pm - 6:10pm Swine - ROYAL PALM SALON 1-2 Organizers: Gary A Rohrer, USDA, ARS, USMARC and Cathy Ernst, Department of Animal Science, Michigan State University

1:30pm Luca Fontanesi, Department of Agricultural and Food Sciences, University of Bologna "Genomics Meets Metabolomics: Developing a Systems Biology Approach to Understand the Genetic Mechanisms Affecting Complex Traits in Pigs" (W761) 1:55pm Alex Clop, Centre for Research in Agricultural Genomics (CRAG) "Identification of damaging mutations in porcine taste receptor and appetite-reward genes by genome capture coupled with high throughput sequencing" (W762) 2:20pm Toby Hunt, Wellcome Trust Sanger Institute "Comparative Analysis of the Gene Sets of Mammalian Sex Chromosomes" (W763) 2:45pm Dicussion of Coordinators Funds 3:30pm Break 4:00pm Zhihua Jiang, Washington State University "Whole Transcriptome Target Sequencing: A Tail Counting Method" (W764) 4:15pm Dan Nonneman, USDA, ARS, USMARC "Research on Gilt First Estrus and Pubertal Development at USMARC" (W765) 4:30pm Joan K Lunney, APDL, BARC, ARS, USDA "Translational Genomics of Porcine Reproductive and Respiratory Syndrome (PRRS)" (W766) 4:45pm Daniel Ciobanu, University of Nebraska "Analysis of the Host Genetics Influence on PCV2 Susceptibility" (W767) 5:00pm Randall S Prather, University of Missouri "CRISPR/Cas9-Mediated Genetic Engineering: Is CD163 an Entry Mediator for PRRSv Infection?" (W768) 5:15pm Catherine W Ernst, Department of Animal Science, Michigan State University "Evidence of RNA Editing in Pig Longissimus Dorsi Muscle" (W769) 5:30pm Christopher K Tuggle, Iowa State University "Characterizing the Iowa State University Severe Combined Immune Deficient (SCID) Pig" (W770) 5:45pm Election of officers and other business

33 Saturday - January 10, 2015

3:00pm - 4:00pm Coffee Break - ATLAS FOYER

4:00pm - 6:10pm Analysis of Complex Genomes - TOWN AND COUNTRY Organizers: Hongbin Zhang, Texas A&M University, Boulos Chalhoub, URGV- INRA and David Stelly, Texas A&M University

4:00pm Hana Simkova, Institute of Experimental Botany "BioNano Genome Map of a Wheat Chromosome Arm: A Tool to Support Sequence Assembly in a Complex Genome" (W014) 4:20pm Armel Salmon, University of Rennes 1 - UMR CNRS 6553 "The Challenges of Genomics in Polyploid Spartina Species: How to Deal with Hybrid Genomes and High Redundancy?" (W015) 4:40pm Yang Zhang, Texas A&M University "The Molecular Mechanisms of Plant Polyploidization Revealed By Systems Analysis of the Genomes and Transcriptomes of Wheat, Cotton and Related Species" (W016) 5:00pm Cheng-Cang Charles Wu, Intact Genomics, Inc "Fungal Artificial Chromosome (FAC): A Novel Technology to Translate the Whole Genome Sequence Information into the Secondary Metabolome in Filamentous Fungi" (W017) 5:20pm Philipp Emanuel Bayer, University of Queensland "Assessing and Validating the Amphidiploid Genome of Brassica napus using Genotyping by Sequencing" (W018) 5:40pm Stephane Rombauts, VIB Department of Plant Systems Biology, Ghent University "A Whole Genome Sorting-Whole Genome Shotgun (WGS2) Approach for Sequencing the Allotetraploid Durum Wheat Genome" (W019)

4:00pm - 6:10pm Bioenergy Grass Genomics - PACIFIC SALON 2 Organizers: Kerrie Farrar, Aberystwyth University and Kankshita Swaminathan, University of Illinois Urbana-Champaign 4:00pm Stephen P Moose, University of Illinois Urbana-Champaign "Update on Assembly and Functionality of the Miscanthus Genome Sequence" (W056) 4:20pm Maurice Bosch, Aberystwyth University "Constructing a Comprehensive Picture of the Miscanthus Cell Wall to Advance Its Deconstruction" (W057) 4:40pm Sarah Purdy, Aberystwyth University "The carbohydrate metabolic profile can be used as a biomarker of productivity in Miscanthus" (W058) 5:20pm Laura Bartley, University of Oklahoma "Genomics and Genetics of Switchgrass Cell Wall Quality" (W059) 5:40pm David M Braun, University of Missouri "Functional Genomics of Sugar Content in Sweet Sorghum Stems" (W060) 6:00pm Daniel S Rokhsar, DOE Joint Genome Institute "Comparative Genomics of Bioenergy Grasses" (W061)

34 Saturday - January 10, 2015

4:00pm - 6:10pm Climate Change and ICRCGC 1 - GOLDEN BALLROOM Organizer: Chittaranjan Kole, Bidhan Chandra Agricultural University

4:00pm Rajeev K Varshney, ICRISAT "Translational Genomics for Developing Climate-Change Ready Chickpeas" (W145) 4:20pm Rishu Sharma, Bidhan Chandra Agricultural University "Developing Disease Resistant Crop Varieties in the Changing Scenario of Global Warming and Climate Change" (W146) 4:40pm Wayne Hunter, USDA Agricultural Research Service "Developing Insect Resistant Crop Varieties to Combat New Insects and New Biotypes" (W147) 5:00pm David A Lightfoot, Southern Illinois University "Developing Crop Varieties with Improved Nutrient-Use Efficiency" (W148) 5:20pm Timothy Porch, USDA-ARS Tropical Agriculture Research Station "Advances in the Breeding and Genetics of Heat Tolerance to Alleviate the Effects of Climate Change, with a Focus on Common Bean" (W149) 5:40pm Kiyosumi Hori, National Institute of Agrobiological Sciences "Uncovering Major and Minor QTLs Generating Natural Variation in Heading Date Among Asian Rice Cultivars" (W150) 6:00pm Robert Henry, University of Queensland QAAFI "Fostering Global Collaboration to Combat Climate Change through Networking of Existing Crop-Based Consortia" (W151)

4:00pm - 6:10pm Next Generation Genome Annotation and Analysis - TOWNE Organizer: Barry Moore, USTAR Center for Genetic Discovery

4:00pm Shin-Han Shiu, Michigan Stat University "Nuances in Plant Genome Annotation: Those Duplicated and Dead Genes" (W462) 4:30pm Joshua Puzey, College of William and Mary "Transposon Density Affects Homeolog Specific Gene Expression in Allopolyploid Monkeyflower (Mimulus)" (W463) 5:00pm Daniel D Ence, Eccles Institute of Human Genetics, University of Utah “Transposable Element Islands Facilitate Adaptation to Novel Environments in an Invasive Species" (W464) 5:30pm Ingo Braasch, University of Oregon "The Spotted Gar Provides Connectivity Among Vertebrate Genomes and Insights into Evolution By Genome Duplication in Fish" (W465)

35 Saturday - January 10, 2015

4:00pm - 6:10pm Non-Seed Plants - SUNRISE Organizer: Stefan A Rensing, University of Marburg

4:00pm Koichi Hori, Department of Biological Sciences, Tokyo Institute of Technology "Klebsormidium flaccidum Genome Reveals Genome Evolution for Plant Terrestrial Adaptation" (W466) 4:20pm Tomoaki Nishiyama, Kanazawa University "The Chara braunii Genome" (W467) 4:40pm Jim Haseloff, University of Cambridge "The Marchantia Genome Project" (W468) 5:00pm Dave Weston, Oak Ridge National Laboratory "The Sphagnum Genome Project" (W469) 5:20pm Stuart McDaniel, University of Florida "The Ceratodon Genome Project" (W470) 5:40pm Daniel Lang, University of Freiburg, Plant Biotechnology "The Physcomitrella patens Flagship Genome Revisited Based on Pseudochromosomes" (W471)

4:00pm - 6:10pm Oats - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Rick Jellen, Brigham Young University and Nicholas A Tinker, Agriculture and Agri-Food Canada

4:00am Gabriele Gusmini, PepsiCo "Oat Global: Uniting the Oat World at OatGlobalorg" (W476) 4:20pm Clare Saied, Cornell University, Dept of Plant Breeding and Genetics "Oat Global and T3-Oat: Relational Data for Oat Genotypes and Phenotypes" (W477) 4:40pm Jessica Schlueter, University of North Carolina at Charlotte "Ode to an Oat: Theme and Variations on a Map" (W478) 5:00pm Melissa C Fogarty, Brigham Young University "Characterization of Hemicellulose and Starch Biosynthesis Genes in Avena" (W479) 5:20pm Sergio Lucretti, ENEA - Italian Agency for New Technologies "Progress in Oat FISHIS and Chromosome Specific Sequencing" (W480) 5:40pm Nicholas A Tinker, Agriculture and Agri-Food Canada "Local GBS Haplotypes in Hexaploid Oat: How and Why?" (W481)

36 Saturday - January 10, 2015

4:00pm - 6:10pm Population and Conservation Genomics - PACIFIC SALON 3 Organizer: Om P Rajora, University of New Brunswick

4:00pm Loren H Rieseberg, University of British Columbia "Sexual Selection and Rates of Molecular Evolution in Flowering Plants" (W572) 4:15pm Kai N Stölting, University of Fribourg "Genomics of Population Divergence and Species Cohesion in an Ecologically Important Species Complex" (W573) 4:30pm Rebecca N Johnson, Australian Museum Research Institute "The Koala Genome Consortium - the Utilization of de novo Genome and Transcriptome Sequencing for Applied Conservation Genomics of an Iconic Australian Marsupial" (W574) 4:45pm Kirk E Lohmueller, University of California Los Angeles "Population Bottlenecks Led to the Accumulation of Deleterious Variants in Domestic and Wild Canids" (W575) 5:00pm Mark A Phillips, University of Calirfornia, Irvine "Genome-Wide Analysis of Long-Term Evolutionary Domestication in Drosophila melanogaster" (W576) 5:15pm Benjamin Hecht, Columbia River Inter-Tribal Fish Commission "Environmental Adaptation in Chinook Salmon (Oncorhynchus tshawytscha) throughout their Native Geographic Range" (W577) 5:30pm Loretta C Johnson, Kansas state university "Genetic Differentiation, Transcriptome Variation, and Local Adaptation of Dominant Prairie Grass Androspogon gerardii along the Climate Gradient of the US Midwest: Implications for Climate Change and Restoration" (W578) 5:45pm Millie Burrell, Texas A&M University "Exploring Origins, Invasion History and Genetic Diversity of Imperata cylindrica (L) P Beauv (Cogongrass) using Genotyping by Sequencing" (W579) 6:00pm Berthold Heinze, Austrian Federal Research Centre for Forests (BFW) "Higher Non-Synonymous Substitution Rates in Disease Resistance, Wood Synthesis and Stress-Responsive Genes in Clonal Varieties of Woody Biomass Species" (W580)

4:00pm - 6:10pm New Approaches for Developing Disease Resistance in Cereals - PACIFIC SALON 1 Organizers: Sarah Davidson Evanega, Cornell University, Jan E Leach, Colorado State University and Hei Leung, International Rice Research Institute

4:00pm Jin-Long Qiu, Institute of Microbiology, Chinese Academy of Sciences "Editing the Wheat Genome for Disease Resistance" (W457) 4:20pm Diana Garnica, College of Agricultural & Marine Sciences "Rust Proteomics: Tools to Understand Effector Molecules" (W458) 4:40pm Diane Saunders, The Genome Analysis Centre "Developing new tools for interrogating cereal invaders" (W459) 5:00pm Anne Osbourn, John Innes Institute "Moving Forward: Metabolic Engineering for Disease Resistance" (W460) 5:20pm Hei Leung, International Rice Research Institute "Allele Mining and Enhanced Genetic Recombination for Stress Resistant Crops" (W461)

Saturday - January 10, 2015

4:00pm - 6:10pm Small RNA - GOLDEN WEST Organizers: Blake C Meyers, University of Delaware and Pamela J Green, University of Delaware

4:00pm Dong-Hoon Jeong, Hallym University "Genome-Wide Analysis of microRNAs Associated with Flower Development in Rice" (W666) 4:20pm Alexandre Webster, California Institute of Technology "Distinct Recruitment Mechanisms for Aub and Ago3 to Nuage Lead to Functional Compartmentalization of the pIRNA Pathway in Drosophila" (W667) 4:40pm Guiliang Tang, Michigan Technological University "Inactivating microRNAs By Short Tandem Target Mimics and Silencing Coding Genes By Artificial microRNAs and Their Applications" (W668) 5:00pm Changchun Xiao, The Scripps Research Institution "MicroRNA Control of Immunity and Cancer" (W669) 5:20pm Sachin Teotia, Michigan Technological University "Targeting microRNAs for Destruction in Crop Plants By Short Tandem Target Mimic (STTM)" 5:40pm Kerri Gilbert, Donald Danforth Plant Science Center "Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum" (W670) 6:00pm Shou-Wei Ding, University of California, Riverside "Virus-Activated siRNAs (vasiRNAs) - A Novel Class of Arabidopsis Endogenous siRNAs Induced by Virus Infection" (W671)

4:00pm - 6:10pm Genome Management and Analysis with CoGe - CALIFORNIA Organizer: Eric Lyons, University of Arizona | iPlant Collaborative Co-chairs: Haibao Tang, J Craig Venter Institute and Eric Lyons, University of Arizona | iPlant Collaborative

4:00pm Haibao Tang, J Craig Venter Institute "Genome Analysis with CoGe" (W340)

5:30pm - 8:30pm Canadian Genome Centres Reception - TIKI PAVILION TERRACE

OH CANADA! Please join Team Canada as we invite you to network with some of the best plant, animal and microbial genomics researchers in Canada Learn more about the latest research in the environment, foresty, bioenergy & bioproducts, crops, livestock, aquaculture & fisheries and metagenomics This networking event is hosted by the Canadian Genome Centres (CGC) The CGC are catalyzing solutions to world-wide challenges through strategic investments in genomics research projects We are looking forward to meeting new partners and reseachers from around the world Light refreshments will be served so pre-registration is required

6:20pm - 8:00pm IWGSC Business Meeting - PACIFIC SALON 4-5 (2ND FLOOR)

38 Sunday - January 11, 2015

7:00am - 8:00am Continental Breakfast - GOLDEN BALLROOM

7:00am - 6:00pm Registration - ATLAS FOYER

8:00am - 10:10am Applied Triticeae Genomics - PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Michael Bevan, John Innes Centre

8:00am Daniel Rokhsar, DOE Joint Genome Institute "Progress in Wheat Structural Genomics" (W029) 8:20am Matthias Pfeifer, Plant Genome and Systems Biology, Helmholtz Center Munich "Comparative Analysis of Gene Expression Regulation Among Diploid and Polyploid Wheat Genomes" (W030) 8:40am Aurelie Evrard, INRA GDEC "Epigenomic Maps of Bread Wheat Chromosome 3B" (W031) 9:00am Katherine Jordan, Kansas State University "Sequence-Based Map Development of Wheat NAM Populations" (W032) 9:20am Ksenia Krasileva, University of California Davis "Tilling for Disease Resistance Genes" (W033) 9:40am Brande Wulff, John Innes Centre "Battling Stem Rust with Cloned Resistance Genes: NB-LRRs in the Haystack" (W034) 10:00am Kirby Nilsen, University of Saskatchewan "An Integrated Genomic Approach Towards Cloning the Stem Solidness Gene Sst1 in Wheat" (W035)

8:00am - 10:10am Comparative Genomics - GOLDEN WEST Organizers: Yong Q Gu, USDA ARS, Western Regional Research Center and Nathan M Springer, University of Minnesota

8:00am Ksenia Krasileva, University of California Davis "One Plant - Multiple Genomes: Phasing Homeologs in Polyploid Wheat" (W162) 8:20am Candice Hirsch, University of Minnesota "Comprehensive De Novo genome Assemblies and Resequencing of Diverse Individuals Provides Insights into Structural Diversity and the Relationship with Transcriptional Diversity in Maize" (W163) 8:40am Joachim Messing, Rutgers University "Genomic Insights into the Evolution of Angiosperms" (W164) 9:00am Michele Morgante, Università di Udine and Istituto di Genomica Applicata "From One To The Many Genomes Of A Plant: The Evolution Of The Grapevine Pan-Genome" (W165) 9:20am Robert Schmitz, University of Georgia "Comparative Epigenomics: Exploring Patterns of DNA Methylation throughout Flowering Plants" (W166) 9:40am Jan Dvorak, Department of Plant Sciences, University of California "Slow Rate of Genome Evolution and Frequent Cycles of WGD followed by Dysploid Reduction in Woody Rosids"

39 Sunday - January 11, 2015

8:00am - 10:10am Development and Application of Transgenic Technology in Agriculture - ROYAL PALM SALON 3-4 Organizer: Ashok Shrawat, Monsanto

8:00am Jian-Kang Zhu, Purdue University "Gene Editing in Plants using CRISPR/Cas and TALENs" (W220) 8:20am Beat Keller, University of Zurich "Lessons Learnt from Transgenic Gene Pyramiding for Classical Resistance Breeding in Wheat" (W221) 8:40am Yinong Yang, Pennsylvania State University "Plant Genome Editing and Precision Breeding with CRISPR-Cas9 System" (W222) 9:00am Jay Shockey, USDA-ARS, Southern Regional Research Center "Sanding the Rough Edges: In Search of Enhanced Performance of Engineered Enzymes in Transgenic Systems" (W223) 9:20am Vai Lor, University of Minnesota "Targeted Mutagenesis of the Tomato Procera Gene Using TALENs" (W224)

8:00am - 10:10am Equine 2 - ROYAL PALM SALON 5-6 Organizers: Scott V Dindot, Texas A & M University and Theodore S Kalbfleisch, University of Louisville

8:00am Shashikant Pujar, NCBI, National Institutes of Health "Equine Genome Resources at National Center for Biotechnology Information" 8:15am David B Jaffe, Broad Institute "Galloping into the future: how we could create reference genomes for many horse breeds at about $30K each" 8:35am Bin LIU, Ceter of Systematic Genomics, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences "Toward a high quality reference genome map of the domestic horse with whole genome physical mapping and the integration of genome sequence" 8:55am Theodore S Kalbfleisch, University of Louisville "Work Toward EquCab3: A New Reference Genome Sequence for the Domestic Horse" 9:20am Robert Schaefer, University of Minnesota "Selection of Tagging SNPs and Imputation Efficiency of the 670K Commercial SNP Chip" 9:50am James M Reecy, Department of Animal Science, Iowa State University "Update on NRSP8 Activities"

40 Sunday - January 11, 2015

8:00am - 10:10am Gene Introgression - PACIFIC SALON 2 Organizers: Theresa A Musket, University of Missouri and Ian P King, University of Nottingham

8:00am Marta Molnar-Lang, Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, "Introgression of Useful Agronomic Traits from Barley into Wheat" (W324) 8:20am Jesse Poland, Kansas State University "A Tale of Two Accessions: Rapid Curation of Germplasm Collections Using Genotyping-by-Sequencing" (W325) 8:40am Nils Stein, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) "Hordeum bulbosum - Genetic Resources for Barley Crop Improvement Revisited" (W326) 9:00am Yehoshua Saranga, R H Smith Institute of Plant Science & Genetics in Agriculture, The Hebrew University of Jerusalem "Introgression of Wild Alleles for Improving Abiotic Stress Resistance in Crop Plants" (W327) 9:20am Steven S Xu, USDA-ARS "Targeted Introgression of Stem Rust Ug99 Resistance from Wheatgrasses into Pasta and Bread Wheat" (W328) 9:40am Xiang Guo, Institute of Genetics and Developmental Biology "High Resistant Genes of Leaf Rust and Fusarium Transferred to Wheat from Thinopyrum intermedium and Th elongatum" (W329)

8:00am - 10:10am Plant Phenotypes - PACIFIC SALON 3 Organizers: Mary Schaeffer, USDA ARS and University of Missouri and Chi-Ren Shyu, University of Missouri

8:00am Tobias Wuerschum, State Plant Breeding Institute, University of Hohenheim "Precision Phenotyping in Plant Breeding" (W548) 8:18am Edwin Reidel, LemnaTec "HIGH-THROUGHPUT PHENOTYPING – Easing the Genomics-to-Cultivar Bottleneck" (W549) 8:36am Rex Nelson, USDA-ARS-CICGRU "Phenotypes as an Organizing Principle at SoyBase and LegumeInfo Databases" (W550) 8:54am Ethalinda Cannon, Iowa State University "QTL Data Standards at PeanutBase and LegumeInfo" (W551) 9:12am Laurel Cooper, Department of Botany & Plant Pathology, Oregon State University "Curating Maize Diversity: Plant Trait Ontology Annotations for GWAS and QTL Data" (W552) 9:30am Lisa Harper, USDA ARS "An Ontology Approach to Comparative Phenomics in Plants" (W553)

41 Sunday - January 11, 2015

8:00am - 10:10am QTL Cloning - TOWN AND COUNTRY Organizer: Roberto Tuberosa, DipSA - University of Bologna

8:00am Peter Langridge, Australian Centre for Plant Functional Genomics "The Role of Gene Duplication and Allelic Diversity in Adaptation for High Soil Boron" (W619) 8:20am Jose Barrero, CSIRO, Agriculture Flagship "Cloning a Major QTL for Dormancy in Wheat" (W620) 8:40am Andrew K Borrell, University of Queensland "Identifying the Function of Sorghum's Drought Tolerance Stay-Green QTL" (W621) 9:00am Yuqing He, National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University "qPC1 Functions as an Important Regulator of Protein Content and Starch in Rice Grain" (W622) 9:20am Fabien Cormier, BIOGEMMA "Defining QTL Boundaries from GWAS Results" (W623) 9:40am Meiping Zhang, Texas A&M University "Molecular Mechanisms of Quantitative Genetics Revealed By Cloning and Systems Analysis of 474 Genes Controlling Fiber Length in Cotton and 1,501 Genes Controlling Grain Yield in Maize" (W624)

8:00am - 10:10am Solanaceae - PACIFIC SALON 1 Organizers: David Douches, Michigan State University and Giovanni Giuliano, ENEA - Italian Agency for New Technologies

8:00am Kazuki Saito, RIKEN Center for Sustainable Resource Science "Identification of Sterol Side Chain Reductase 2 (SSR2), a Key Enzyme in the Biosynthesis of Cholesterol As the Common Precursor of Toxic Steroidal Glycoalkaloids in Potato" (W672) 8:20am Bjorn Usadel, Forschungzentrum Juelich & RWTH Aachen "Broadening the Genomic Scope for the Solanaceae: New Genome Approaches" (W673) 8:40am Christian Bachem, Plant Breeding Wageningen University & Research centre, Wageningen, Netherlands "Potato StCDF1: A Master Regulator for Potato Tuber Development" (W674) 9:00am Yaniv Semel, Phenome Networks "A Collaborative Platform for Sharing and Analyzing Phenotypic Data" (W675) 9:20am Shelley Jansky, USDA-ARS "Reinventing Potato at the Diploid Level" (W676) 9:40am James Giovannoni, USDA-ARS and Boyce Thompson Institute for Plant Research "Transcriptional Control of Tomato Fruit Ripening Is Mediated By Diverse Positive and Negative Regulators" (W677)

42 Sunday - January 11, 2015

8:00am - 10:10am Sorghum/Millet - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Yinghua Huang, USDA ARS

8:00am Yinghua Huang, USDA ARS "Introduction" (W683) 8:05am Jeffrey L Bennetzen, University of Georgia "Genetic Analysis of Seed Nutritional Content in Tef Millet" (W684) 8:30am Xiaoqing Yu, Iowa State University "Genomic Selection of 1,000 Biomass Sorghum Accessions and Empirical Validation" (W685) 8:55am Dong Zhang, University of Georgia "Comparative Genetics of Inflorescence and Plant Height Components in Divergentcereal Lineages Represented By Sorghum (Panicoidae) and Rice (Oryzoidae)" (W686) 9:20am Geoffrey Morris, Kansas State University "Dissecting Complex Traits in Sorghum with a Nested Association Mapping Population" (W687) 9:45am Zhanguo Xin, USDA ARS "Potential of Multiseeded Mutant (msd) to Boost Sorghum Grain Yield" (W688)

8:00am - 10:10am Resources and Programs for Undergraduate Education in Genomics - TOWNE Organizer: Scott T Woody, U Wisconsin-Madison

8:00am Scott T Woody, U Wisconsin-Madison "GameteMaker: A Genetic Mapping Simulation Program That Helps Students to Connect Mutant Phenotypes with Underlying, DNA Sequence-Based Genotypes" (W631) 8:20am Dave Micklos, DNA Learning Center "Using Students' Own DNA Sequences to Explore Human Evolution" (W632) 8:40am Irina Makarevitch, Hamline University "Training Students in Analyzing "Big Data" : Res (W633) 9:00am Brent Buckner, Truman State University "Introducing Undergraduate Students to Gene and Genome Structure through Gene Annotation" (W634) 9:20am James Burnette, University of California, Riverside "Neil A Campbell Science Learning Laboratory and the Dynamic Genome Course: Models for Authentic Research Experiences in the Teaching Laboratory" (W635) 9:40am Vincent Buonaccorsi, Juniata College "Undergraduate Genomics Research through GCAT-SEEK: The Genome Consortium for Active Teaching Using Next-Generation Sequencing" (W636)

43 Sunday - January 11, 2015

8:00am - 12:00pm Aquaculture Poster Session - LOWER LEVEL POSTER AREA Organizer: Roger L Vallejo, USDA-ARS-NCCCWA

8:00am Andrew Jasonowicz, University of Washington "Population Genomics of West Coast and Alaskan Sablefish (Anoplopoma fimbria)" 8:05am Barbara Picone, University "Comparative Analysis of De novo Assembled Transcriptome Data from Cultured and Wild Specimens of the South African Abalone (Haliotis midae: Gastropoda, Haliotidae)" 8:10am Bam D Paneru, Middle Tennessee State University "RNA-Seq Identifies SNPs Associated with Muscle growth and Quality in Rainbow Trout" 8:15am Yuanyuan Wang, Tokyo University of Marine Science and Technology "Identification of White Spot Syndrome Virus Homologues in the Genome of Kuruma Shrimp" 8:20am Agnieszka Stadnik, Simon Fraser University "Yeast Two Hybridization Analyses of Atlantic Salmon Sdy Interactions" 8:25am Ailu Chen, The Fish Molecular Genetics and Biotechnology Laboratory "Allele-Specific Expression in Interspecific Catfish Hybrids" 8:30am Carlos M Rodriguez Lopez, University of Adelaide "Can Epigenetic Regulation of Sex-Ratios Explain Natural Variation in Self- Fertilization Rates?" 8:35am Orly Eshel, Volcani Research Center "Detection of Genes and microRNA Involved in Sex Determination in Nile Tilapia (Oreochromis niloticus)" 8:40am Xin Geng, Auburn University "GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of Related Genes within Major QTLs for Columnaris Disease Resistance" 8:45am Alexandre R Caetano, Embrapa Recursos Genéticos e Biotecnologia "De Novo Genome Assembly of the South American Freshwater Fish Tambaqui (Colossoma macropomum)" 8:50am Catherine Purcell, Southwest Fisheries Science Center, National Marine Fisheries Service "Stepping Toward Sustainable Aquaculture: Genomic Resource Development to Help Guide Broodstock Selection and Culture Practices for the California Yellowtail, Seriola lalandi" 8:55am Cristian Araneda, Universidad de Chile, Depto de Produccion Animal "Contrasting Patterns of Neutral and Adaptive Genetic Variation of Chilean Blue Mussel (Mytilus chilensis) Due to Local Adaptation and Aquaculture" 9:00am Geoff Waldbieser, USDA - Agricultural Research Service "A Genome Sequence Assembly for Channel Catfish, Ictalurus punctatus" 9:05am Hao Ma, West Virginia University "Identification of mitochondrial microRNAs related to postovulatory aging-induced egg deterioration in rainbow trout" 9:10am Roger L Vallejo, USDA-ARS-NCCCWA "Accuracy of Genomic Prediction for BCWD Resistance in Rainbow Trout Using 24K RAD-SNP and 49K SNP and Bayes B/C and single-step GBLUP methods"

44 Sunday - January 11, 2015

9:15am Rune Andreassen, Oslo and Akershus University College of Applied Sciences "Tissue and Disease Specific Expression of miRNA Genes in Atlantic Salmon" 9:20am Weiwei You, Xiamen University "New Insights into the Differences Between Triploid and Diploid Fujian Oyster By Integrated Gene Expression Profiling and Proteomic Analyses" 9:25am Yniv Palti, USDA-ARS-NCCCWA "The Development and Characterization of a 57K SNP Array for Rainbow Trout" 9:30am Jun Yao, Auburn University "Transcriptomic Signatures in Common Carp Skin during Scale Regeneration" 9:35am Prasanthi P Koganti, West Virginia University "Differential Expression of Mirnas in Skeletal Muscle of Rainbow Trout Under the Influence of Estrogen" 9:40am Qifan Zeng, Auburn University "RNA-Seq Analysis Unraveled Genes and Pathways Involved in Testicular Differentiation in Channel Catfish" 9:45am Rafet Al-Tobasei, Middle Tennessee State University "Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout and Their Potential Roles in Muscle Growth and Quality" 9:50am Alejandro P Gutierrez, Simon Fraser University "Characterization of Maskin Isoforms in Atlantic Salmon, a Candidate Gene Associated to Sexual Maturation" 9:55am Andreas Borchel, Leibniz Institute for Farm Animal Biology (FBN) "Distinct Tissue-Specific Gene Expression Reveals Different Creatine-Synthesizing Pathways Between Mammals and Fish" 10:00am Caird E Rexroad, III, USDA-ARS-NCCCWA "Development of a Fluidigm SNP Panel for Genetic Analysis in Rainbow Trout" 10:05am Chen Jiang, The Fish Molecular Genetics and Biotechnology Laboratory "Characterization of Complement Regulatory Genes in Channel Catfish and Their Involvement in Disease Defense Response" 10:10am Geoff Waldbieser, USDA - Agricultural Research Service "Production of Large Insert Paired Reads for a Genome Assembly of the Blue Catfish, Ictalurus furcatus" 10:15am Jian Wang, West Virginia University "Comprehensive Characterization of 9,674 Rainbow Trout (Oncorhynchus mykiss) Large Intergenic Noncoding RNAs Using Next Generation Sequencing" 10:20am Jinzeng Yang, University of Hawaii at Manoa "Evaluation of Seven Microsatellite DNA Markers for Their Genetic Variation and Application to Paternity Determination in Pacific White Shrimp, Penaeus vannamei " 10:25am Krista M Nichols, NOAA Fisheries "The Genetic Basis of Age at Maturity in Hatchery and Natural Origin Chinook Salmon (Oncorhynchus tshawytscha)" 10:30am Soniya Balli, University of Massachusetts Dartmouth "Understanding Behavioral Variation in Populations of Rainbow Trout" 10:35am Timothy D Leeds, USDA-ARS-NCCCWA "Rainbow Trout (Oncorhynchus mykiss) Resistance to Columnaris Disease Is Heritable and Favorably Correlated with Bacterial Cold Water Disease Resistance"

45 Sunday - January 11, 2015

8:00am - 12:40pm Cattle/Sheep/Goat 2 - SAN DIEGO Organizer: Wansheng Liu, Department of Animal Science, Penn State University

8:00am Harvey Blackburn, National Center for Genetic Resources Preservation, USDA "A Livestock Database for Long Term Storage and Use of Genomic and Other Associated Information" (W123) 8:20am Heather J Huson, Cornell University "A Genetic Investigation of Isle of Jersey Cattle, the Foundation of the Jersey Breed" (W124) 8:40am Derek Bickhart, Animal Genomics and Improvement Laboratory, USDA-ARS "The Use of PacBio and Hi-C Data in de novo Assembly of the Goat Genome" (W125) 9:00am Raluca Mateescu, Dept of Animal Sciences, University of Florida "Genomic Analyses for Palatability of Beef" (W126) 9:20am Shannon Clarke, Invermay Agricultural Centre, AgResearch Ltd "Utilisation of the Ovine HD SNP Chip for Meat Quality Traits in NZ Composite Terminal Sire Breeds" (W127) 9:40am Stephanie McKay, University of Vermont "DNA Methylation Affects Phenotypic Variation in Cattle Possessing Extreme Phenotypes for Residual Feed Intake" (W128) 10:00am Break 10:30am Brian W Kirkpatrick, University of Wisconsin-Madison "Mapping a Major Gene for Bovine Ovulation Rate" (W129) 10:50am Russell Lyons, School of Veterinary Science, The University of Queensland "Evidence for Positive Selection of Taurine Genes within a QTL Region on Chromosome X Associated with Testicular Size in Australian Brahman Cattle" (W130) 11:10am Yang Da, Department of Animal Science, University of Minnesota "Genome Changes Due to Forty Years of Artificial Selection Associated with Divergent Dairy Production and Reproduction" (W131) 11:30am Stéphane Fabre, INRA "Major Genes Influencing Prolificacy in Sheep: A Source of Basic Knowledge of Ovarian Function and a Tool for Genetic Improvement" (W132) 12:10pm Laercio Portoneto, CSIRO Agriculture Flagship "A Systems Biology Approach to Prioritize SNP and Genes Affecting Fertility in Tropical Beef Cattle" (W133)

46 Sunday - January 11, 2015

8:00am - 12:40pm Genome annotation resources at the EBI - CALIFORNIA Organizer: Sandra Orchard, EMBL-EBI

8:00am Sandra Orchard, EMBL-EBI "Introduction” 8:15am Emily Perry, European Bioinformatics Institute (EMBL-EBI) "Browsing Genes and Genomes with Ensembl and Ensembl Genomes" (W332) 9:15am Gary Saunders, European Bioinformatics Institute (EMBL-EBI) "New Variation Archive at EMBL-EBI: European Variation Archive" (W333) 9:45am Toby Hunt, Wellcome Trust Sanger Institute "Manual Genome Annotation and Vega" (W334) 10:15am Maria Keays, European Bioinformatics Institute (EMBL-EBI) "Functional Genomics Resources at EBI: ArrayExpress and Expression Atlas" (W335) 10:45am Claire O'Donovan, European Bioinformatics Institute (EMBL-EBI) "Manual and Automatic Annotation of Plants and Animals in the UniProt Knowledgebase and the Gene Ontology" (W336) 11:15am Sandra Orchard, EMBL-EBI "Metabolomics and Small Molecule Resources at the EBI" (W337) 11:45am Katrina Costa, EMBL-EBI "Training in Data, Tools and Resources for Life Scientists" (W338) 12:15pm Dominic Clark, EMBL-EBI "Introducing the EMBL-EBI Industry Program" (W339)

8:00am - 12:40pm Poultry 2 - SUNSET Organizers: Fiona McCarthy, University of Arizona and Douglas D Rhoads, University of Arkansas

8:00am Jiuzhou Song, University of Maryland "Non-Coding RNA Identification of Marek’s Disease in CD4+ T Cells" (W604) 8:20am Tae Hyun Kim, University of California "Neal Jorgenson Genomics Award: RNA-Seq Based Genome-Wide Analysis of Genomic Imprinting in Chicken Lungs" (W605) 8:40am Wesley Warren, The Genome Institute "Update on the Chicken Genome" (W606) 9:00am Steffen Weigend, Institute of Farm Animal Genetics, Friedrich Loeffler Institut "Genome-Wide Pattern and Magnitude of Genetic Diversity in a Wide Range of Diverse Chicken Breeds" (W607) 9:40am William Muir, Purdue University "Use of Allele Specific Expression to Fine Map QTL and Enhance Genomic Selection" (W608) 10:00am Break 10:30am Byung-Whi Kong, University of Arkansas "Bioinformatic Interpretation through Upstream and Functional Analysis of Global Gene Expression Associated with Feed Efficiency in Broiler" (W610)

47 Sunday - January 11, 2015

10:50am Douglas D Rhoads, University of Arkansas "Genome Analysis of a Bacterium that Causes Lameness" (W611) 11:10am Douglas D Rhoads, University of Arkansas "NC1170 Business Meeting" (W612)

8:00am - 12:40pm Sugar Cane (ICSB) - ROYAL PALM SALON 1-2 Organizers: Paul H Moore, Centro de Tecnologia Canavieira and T Erik Mirkov, Texas A&M University

8:00am Changsoo Kim, University of Georgia "Comparative Analysis of Miscanthus and Saccharum Reveals a Shared Whole- Genome Duplication but Different Evolutionary Fates" (W748) 8:30am Jianping Wang, University of Florida "Diversity and Exome Variation in Saccharum Spp" (W749) 9:00am Jorge A Da Silva, Texas A&M University "Using Next Generation Sequencing for Tagging Stress Resistance Genes from S spontaneum" (W750) 9:30am Break 10:00am Fredy Altpeter, University of Florida - IFAS "TALEN-Mediated Precision Mutagenesis and Intragenic RNAi for Lignin Reduction in Sugarcane" (W751) 10:30am Fredy Altpeter, University of Florida - IFAS "Metabolic Engineering of Sugarcane for Production of Oil and Increased Biomass Yield" (W752) 11:00am B Parameswari, Sugarcane Breeding Institute Regional Centre "Genome Organization and Molecular Characterization of P1 Suppressor from Indian Sugarcane Streak Mosaic Virus isolates" (W753) 11:30am Frederik C Botha, Sugar Research Australia Limited "Metabolic Changes Associated with the Development of Yellow Canopy Syndrome in Sugarcane" (W754)

48 Sunday - January 11, 2015

8:00am - 6:10pm Forest Tree - SUNRISE Organizers: Nathaniel R Street, Umeå Plant Science Centre, Umeå University , Larry Smart, Cornell University and Jeanne Romero-Severson, University of Notre Dame This workshop will consist of four sessions roughly organized as follows: 8:00-9:50 Session One: Ecological and Evolutionary Genomics 10:30-12:30 Session Two: Structural Genomics and Markers 13:30-15:30 Session Three: Genome Networks and Regulation 16:00-17:20 Session Four: Comparative Genomics

8:00am Welcome Remarks 8:10am Jarkko T Salojärvi, University of Helsinki "Silver Birch - a Model for Tree Genetics?” (W267) 8:50am Liang-Jiao Xue, University of Georgia "Exploiting Genome Variation to Improve Next-Generation Sequencing Data Analysis and CRISPR gRNA Design in Populus tremula x alba 717-1B4" (W268) 9:10am Thomas Lane, University of Tennessee Institute of Agriculture "Developing Genomic Resources for Green Ash through Deep Transcriptome Sequencing and Low-Coverage Whole Genome Sequencing" (W269) 9:30am Jérôme Bartholomé, INRA "High-Resolution Genetic Maps of Eucalyptus Hybrids Improve E grandis Genome Assembly and Give Insight into Genes Associated with Carbon Isotope Composition" (W270) 9:50am Break 10:30am Matthew S Zinkgraf, US Forest Service "Combinatorial Regulation of Gene Expression in the Vascular Cambium of Populus trichocarpa" (W271) 10:50am Andrew Groover, US Forest Service "Transcriptional and Hormonal Control of Gravitropism and Tension Wood Formation in Populus" (W272) 11:10am Hazel Katherine Smith, University of Southampton "Adaptation to Drought in Populus: Is Leaf Growth a Key Trait?" (W273) 11:30am Hairong Wei, Michigan Technological University "Identifying Genes Controlling Complex Traits in Forest Trees via Network Construction and Decomposition" (W274) 11:50am Xiaohan Yang, Oak Ridge National Laboratory "Genome-Wide Discovery of Non-Coding RNAs in Willow (Salix purpurea)" (W275) 12:10pm Lunch 1:30pm Emily Grau, UC Davis "TreeGenes: A Comprehensive Resource for Forest Tree Genomics" (W276) 1:50pm Margaret Staton, University of Tennessee Institute of Agriculture "The Hardwood Genomics Project: Outcomes and Future Directions after Four Years of Resource Development" (W277) 2:10pm Elizabeth Sollars, Queen Mary University of London "The Genome of Fraxinus excelsior (European ash)" (W278) 2:30pm TBD "Coupling Metabolomics, mQTL and Association Genetics Analyses to Identify Genes Regulating the Production of Metabolites" (W279)

49 Sunday - January 11, 2015

2:50pm Craig H Carlson, Cornell University "Transcriptome Variation in Shrub Willow (Salix) Hybrids" (W280) 3:10pm Mike Allwright, University of Southampton "Improving Poplar for Biofuel Applications: Elucidating the Genetic Basis of Important Traits in Populus nigra through an Association Genetics Approach in a Natural, Wide Mapping Population" (W281) 3:30pm Coffee Break 4:00pm Sam Yeaman, University of British Columbia "Contrasting Genomic Signatures of Local Adaptation in Lodgepole Pine (Pinus contorta) and Interior Spruce (Picea glauca x Picea engelmannii)" (W282) 4:20pm Stephen Keller, University of Vermont "Adaptive Gene-Environment Associations in Populus flowering Time Genes: New Insights from the Southern Range Edge of Balsam Poplar" (W283) 4:40pm Benjamin Hornoy, Université Laval "Differential Genetic Adaptation to Climate within and Between Two Picea species (P mariana and P glauca)" (W284) 5:00pm Adriana Suarez-Gonzalez, Department of Botany, University of British Columbia "Evidence That Allelic Introgression from Populus balsamifera (balsam poplar) Underlies Local Adaptation in P trichocarpa (black cottonwood)" (W285)

9:30am - 10:30am Coffee Break - ATLAS FOYER

10:30am - 12:40pm Abiotic Stress - GOLDEN BALLROOM Organizer: Henry T Nguyen, University of Missouri

10:30am Henry T Nguyen, University of Missouri "Opening Remarks" 10:35am Jurandir Magalhaes, Embrapa Maize and Sorghum "Phosphorus-Starvation Tolerance 1 Enhances Phosphorus Acquisition and Sorghum Performance on Low-Phosphorus Soils" (W002) 10:55am Deyue Yu, Nanjing Agricultural University "Function and Diversity of GmACP1, an Important Factor Modulating Soybean Tolerance to Low-P Stress" (W003) 11:15am Himabindu Kudapa, ICRISAT "Gene Expression and Protein-Protein Interaction Analysis for Understanding Drought Tolerance Mechanism in Chickpea (Cicer arietinum L)" (W004) 11:35am Li Lin, University of Missouri "Direct Signaling Crosstalk Between Brassinosteroid and Abscisic Acid Regulates Root Growth Maintenance during Water Deficits in Soybean" (W005) 11:55am Ramanjulu Sunkar, Oklahoma State University "Role of MicroRNAs in Plant Abiotic Stress Responses" (W006) 12:15pm Germain C Pauluzzi, University of California, Riverside "Accessing Multi-Tiered and Cell-Specific Regulation of Responses to Abiotic Stress in Crops" (W007)

50 Sunday - January 11, 2015

10:30am - 12:40pm Cat & Dog Workshop - ROYAL PALM SALON 5-6 Organizers: William J Murphy, Texas A&M University and Adam R Boyko, Cornell University This workshop was sponsored in part by generous contributions from The Morris Animal Foundation and Illumina The Cat & Dog workshop will provide presentations of cat and dog genetic studies that have been submitted to PAG from both USA and non-USA researchers The workshop will also have discussion topics, covering areas of interest that would be of value to the overall communities and young investigators

10:45am Introductory Remarks 10:30am Michael J Montague, Washington University School of Medicine "Comparative Analysis of the Cat Genome Reveals Clues to Feline Domestication" (W108) 10:45am Barbara Gandolfi, University of Missouri-Columbia "Inherited Osteoarthropathy in Scottish Fold Cats Is Associated with Altered Calcium Channel Function" (W109) 11:00am William J Murphy, Texas A&M University "Mapping Traits in Feline Hybrids" (W110) 11:15am Leslie A Lyons, University of Missouri-Columbia "Recent successes and growth of the 99 Lives Cat Genome Sequencing Initiative" (W111) 11:33am Julia Wildschutte, University of Michigan "Activities and Biological Implications of Mobile Elements in Canines" (W112) 11:48am Adam R Boyko, Department of Biomedical Sciences Cornell University "Signatures of Positive Selection in the Dog Genome" (W113) 12:03pm Brian W Davis, NHGRI "Utilization of Contemporary Canine Diversity to Investigate Breed-Specific Selection and Trait Fixation" (W114) 12:18pm Jennifer Meadows, Uppsala University "Dissecting the Role Regulatory Variants Play in the Subphenotypes of Canine Complex Traits" (W115) 12:38pm Concluding Remarks

51 Sunday - January 11, 2015

10:30am - 12:40pm Computational Gene Discovery - PACIFIC SALON 3 Organizer: Mark Borodovsky, Georgia Institute of Technology 10:30am Ivan Liachko, University of Washington - Department of Genome Sciences "Chromosome-Scale Scaffolding of de novo Genome Assemblies Using Hi-C" (W179) 10:50am Anna Vlasova, Center for Genomic Regulation "Annotation of Protein Coding Genes for Non-Model de-novo Sequenced Organisms" (W181) 11:10am Stephane Rombauts, Ghent University "Complexity of Gene Landscape Beyond Model Organisms" (W180) 11:30am Katharina Hoff, University of Greifswald "Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and Augustus" (W182) 11:50am Alexandre Lomsadze, Georgia Institute of Technology "Integration of ab initio Gene Finding with Mapping of Homologous Proteins" (W183) 12:10pm Minoru Kanehisa, Institute for Chemical Research, Kyoto University "Automated Interpretation of Metabolic Capacity from Complete Genomes Using KEGG Modules" (W185) 12:30pm Seong W Cha, University of California San Diego "Proteogenomics of Cancer: Peptides to Events" (W184)

10:30am - 12:40pm EPIC: the Plant Epigenome Project - TOWN AND COUNTRY Organizer: Robert Martienssen, Cold Spring Harbor Laboratory 10:30am Linda Hanley-Bowdoin, NC State University "Chromatin Dynamics during DNA Replication" (W241) 11:00am Laura Gardiner, University of Liverpool "A Genome-Wide Epigenetic Study of Hexaploid Wheat" (W240)

10:30am - 12:40pm Fungal Genomics - ROYAL PALM SALON 3-4 Organizer: Stephen B Goodwin, USDA ARS 10:50am Niklaus Grunwald, USDA-ARS "Comparative Genomics of Phytophthora rubi and P fragariae" (W311) 11:10am N Louise Glass, University of California "Regulatory Networks Associated with Plant Cell Wall Deconstruction by Fungi" (W312) 11:30am Cheng-Cang Charles Wu, Intact Genomics, Inc "Fungal SM Genome Biology: How to Translate Whole Genome Sequence Information into the Secondary Metabolome in Filamentous Fungi?" (W313) 11:50am Braham Dhillon, University of British Columbia "Cronartium Comparative Genomics: Understanding the Canker Causing Basidiomycete Genomes" (W314) 12:10pm Kerri Neugebauer, Kansas State University "Wheat Expression Differences Induced by Six Puccinia triticina Races" (W315) 12:30pm Li-Jun Ma, University of Massachusetts Amherst "A Unique Set of Supernumerary Chromosomes in the Genome of Fusarium oxysporum NRRL32931 Contributes to its Pathogenicity" (W316)

52 Sunday - January 11, 2015

10:30am - 12:40pm Genomics of Non-Classical Model Animals - PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Aaron Avivi, Institute of Evolution, Haifa University, Israel

10:30am Paul W Sternberg, Division of Biology and Biological Engineering, Caltech, Pasadena "Genomics of Nematode Parasites of Pigs, Sheep, and Other Animals: Towards Understanding Human Immune Modulation" (W359) 10:50am Jong Bhak, UNIST "The Tale of Whales Genomics in Aquatic Adaptation - Might It be Associated with Human Disease?" (W360) 11:10am Rasmus Nielsen, Department of Integrative Biology and Statistics "Polar Bears Genomics and Its Association with Cardiomyopathy and Vascular Disease" (W361) 11:30am Morten E Allentoft, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen "Derived Immune and Ancestral Pigmentation Alleles in a 7,000-Year-Old European Hunter-Gatherer" (W362) 11:50am Gabriel Haddad, University of California, San Diego "Adaptation to High Altitude: Does It Teach Us about the Pathobiology of Hypoxia at Sea Level?" (W363)

10:30am - 12:40pm Organellar Genetics - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Michael J Havey, USDA-ARS and University of Wisconsin

10:30am Ian Small, The University of Western Australia "Predicting and Verifying Binding Sites for Pentatricopeptide Repeat (PPR) Proteins" (W482) 11:00am Felix Grewe, The Field Museum of Natural History "The Mitochondrial Genome Evolution of the Geranium Family: Elevated Substitution Rates Decrease Genomic Complexity" (W483) 11:30am Marisa Elena Miller, University of Minnesota/USDA-ARS "Understanding the Role of Cytoplasmic Genomes in Stress Tolerance in Wheat" (W484) 12:00pm Michael J Havey, USDA-ARS and University of Wisconsin "The Mosaic Mutants of Cucumber: A Method to Produce Mitochondrial Knock- Downs" (W485)

53 Sunday - January 11, 2015

10:30am - 12:40pm Plant Chromosome Biology - PACIFIC SALON 1 Organizer: Fangpu Han, Chinese Academy of Sciences

10:30am James A Birchler, University of Missouri "Construction and Applications of Engineered Minichromosomes in Plants" (W520) 10:50am R Kelly Dawe, University of Georgia "Maize siRNAs are Associated with Euchromatin-like Environments that have High Accessibility and Relatively Low H3K9me2" (W521) 11:10am Gernot Presting, University of Hawaii "Impacts of Maize Domestication and Breeding on Neocentromere Formation" (W522) 11:30am Xiyin Wang, Plant Genome Mapping Laboratory, University of Georgia "Telomere-Centric Genome Repatterning Determines Recurring Chromosome Number Reductions during the Evolution of Eukaryotes" (W523) 11:50am Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ "Regulation of Meiotic Chromosome Condensation Progression by the Arabidopsis MMD1 Protein and Its Interacting Protein" (W524) 12:10pm Yalin Liu, Institute of Genetics and Developmental Biology "Sequential De Novo Centromere Formation and Inactivation on a Chromosomal Fragment in Maize" (W525)

10:30am - 12:40pm Polyploidy - PACIFIC SALON 2 Organizers: Andrew Leitch, Queen Mary University of London and M Eric Schranz, Wageningen University and Research

10:30am M Eric Schranz, Wageningen University and Research "Interplay of Polyploid- and Tandem-Derived Gene Duplicates in Chemical Defense and Pathogen Recognition" (W566) 10:50am Kyung Do Kim, University of Georgia "Epigenetic Regulation of Duplicated Genes Involving Spreading of DNA Methylation in Legumes" (W567) 11:10am Damon Lisch, Purdue University "The Role That Transposable Elements May Play in Differential Expression Levels of Maize Paralogs" (W568) 11:30am Michael R Freeling, University of California "Subfunctionalization and Nonfunctionalization, Revisited" (W569) 11:50am Corrinne E Grover, Iowa State University "Evolution of Duplicated Pathways in Networks in Allopolyploid Cotton" (W570) 12:10pm Patrick Edger, University of California "The Role of Gene and Genome Duplications in Network Evolution" (W571)

54 Sunday - January 11, 2015

10:30am - 12:40pm Statistical Genomics - GOLDEN WEST Organizer: Shizhong Xu, University of California

10:30am Qishan Wang, University of California, Riverside "An Empirical Bayes Method for Genome-Wide Association Studies" (W737) 10:50am Lauren M McIntyre, University of Florida "Using Path Analysis to Reveal Novel Components of the Sex Determination Hierarchy in Drosophila melanogaster" (W738) 11:10am Zhiwu Zhang, Washington State University "Getting Power Back from Population Structure and Kinship in Genome-Wide Association Studies" (W739) 11:30am Deniz Akdemir, Cornell University "Locally Epistatic Genomic Relationship Matrices for Genomic Association and Prediction" (W740) 11:50am Shizhong Xu, University of California "A Tutorial of Partial Least Squares Analysis" (W741)

12:30pm - 1:30pm Lunch (Vouchers Provided) - LION FOUNTAIN COURTYARD

1:30pm - 3:40pm Climate Change and ICRCGC 2 - PACIFIC SALON 2 Organizer: Chittaranjan Kole, Bidhan Chandra Agricultural University

1:30pm Jane Rogers, International Wheat Genome Sequencing Consortium "Using Whole-Genome Sequences for Breeding Climate Resilient Cereals" (W152) 1:50pm Jauhar Ali, PBGB, International Rice Research Institute "Developing Crop Varieties with Genome Plasticity" (W153) 2:10pm John Mullet, Texas A&M University "Designing Flowering Times for Climate Optimized Grain and Energy Sorghum Crops" (W154) 2:30pm Michael Abberton, International Institute of Tropical Agriculture (IITA) "Mining Climate Smart Genes from Allied Gene Pools" (W155) 2:50pm Leland J Cseke, The University of Alabama in Huntsville "CO2 Sequestration to Mitigate Effects of Climate Change" (W156) 3:10pm Salvatore Ceccarelli, Free Lance "Adapting Crops to Climate Changes by Evolutionary-Participatory Plant Breeding" (W157)

55 Sunday - January 11, 2015

1:30pm - 3:40pm Degraded DNA and Paleogenomics - PACIFIC SALON 3 Organizer: Greger Larson, University of Oxford

1:30pm Ian Barnes, Natural History Museum "How Do You Know When You Don't Have Any Ancient DNA?" (W212) 1:45pm Daniel G Bradley, Trinity College Dublin "The Best Bones, Imputation and Ancient Genomics" (W213) 2:00pm Jake Enk, Biodiscovery, LLC (dba MYcroarray) "Time, Temperature, and Tiling Density When Capturing Ancient DNA" (W214) 2:15pm Ludovic Orlando, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen "Ancient DNA: From Genomes to Epigenomes" (W215) 2:30pm Eleftheria Palkopoulou, Swedish Museum of Natural History "Genomic Diversity and Population Dynamics of the Woolly Mammoth Prior to Its Extinction" (W216) 2:45pm Peter D Heintzman, Department of Ecology and Evolutionary Biology, University of California Santa Cruz "Resolving the Evolutionary Relationships of Two Enigmatic Ungulates from Pleistocene North America" (W217) 3:00pm Christina Warinner, Dr Christina Warinner - University of Oklahoma "Direct Evidence of Milk Consumption from Ancient Human Dental Calculus" (W218) 3:15pm Robin G Allaby, University of Warwick "A Palaeometagenomic Approach to Track the Neolithisation of Northern Europe" (W219)

1:30pm - 3:40pm Functional Genomics - PACIFIC SALON 1 Organizer: David A Lightfoot, Southern Illinois University

1:30pm Trevor Paul Garnett, The University of Adelaide "Nitrate Responsive Transcription in Maize Is Highly Dynamic Across the Lifecycle" (W299) 1:55pm Allen Good, University of Alberta "Mapping Complex Traits in Plants: Nitrogen Use Efficiency in Barley As a Case Study" (W300) 2:20pm Stephen P Moose, University of Illinois Urbana-Champaign "NUE in Maize" (W301) 2:45pm Trevor Garnett, University of Adelaide "The Response of Maize to N Supply and Demand is Highly Dynamic Across the Lifecycle" (W302) 3:10pm Aaron Fait, Ben-Gurion University "Regulation of Amino Acid Metabolism in Tomato Seeds" (W303) 3:35pm Peizhu Guan, UCSD "Nitrate Foraging By Arabidopsis Root Is Mediated By the Transcription Factor TCP20 through the Systemic Signaling Pathway (from DNA cis-Elements to Nitrate Regulatory Network)" (W304)

56 Sunday - January 11, 2015

1:30pm - 3:40pm Generic Genome Browser - CALIFORNIA Organizer: Scott Cain, Ontario Institute for Cancer Research A Hands on Workshop for Installing, Configuring and Using Your Own JBrowse 1:30pm Scott Cain, Ontario Institute for Cancer Research "JBrowse Installation and Configuration" (W330)

1:30pm - 3:40pm Grape Genome Initiative - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Grant R Cramer, University of Nevada, Reno 1:30pm Dario Cantu, University of California Davis "A Pathogenomic Approach to Decipher the Molecular Mechanisms Underlying Grapevine Diseases" (W378) 1:50pm Lance Cadle-Davidson, USDA-ARS Grape Genetics Research Unit "An Update on VitisGen: Recent Advances in Using DNA Marker Technologies in US Grape Breeding Programs" (W379) 2:10pm Allison Miller, Saint Louis University "Comparative Transcriptomics of Two Grapevine Species" (W380) 2:30pm Nacer Mohellibi, INRA - URGI "Overview of the GnpIS Grape Genomics and Genetic Integrative Resource for Diversity Studies" (W381) 2:50pm Jason Londo, USDA-ARS Grape Genetics Research Unit "The Hunt for Adaptive Variation in Wild Grapevine; Sequencing, Assembly, and Annotation of North American Vitis Reference Transcriptomes" (W382) 3:10pm Supakan Rattanakon, University of Nevada, Reno "ABA Signaling in Grapevine" (W383)

1:30pm - 3:40pm Ornamentals - ROYAL PALM SALON 5-6 Organizers: Phillip Wadl, University of Tennessee and Xinwang Wang, Texas A&M AgriLife Research Center, Texas A&M University

1:30pm Alexander Quentin Susko, University of Minnesota "EST-SSR Development and Validation in Azalea Breeding Populations from Whole Transcriptome Sequencing" (W486) 1:50pm Deborah Dean, Department of Entomology and Plant Pathology, University of Tennessee "Wide Cross-Transferability of SSR Loci from Three Viburnum Species" (W487) 2:10pm Sumei Chen, Nanjing Agricultural University "Ambient Temperature Enhanced Freezing Tolerance of Chrysanthemum dichrum CdICE1 Overexpressing Arabidopsis via miR398" (W488) 2:30pm Takashi Handa, School of Agriculture, Meiji University "Genetic Introgression from Horticultural Varieties to Wild Species in Japanese Evergreen Azalea" (W489) 2:50pm Zhanao Deng, University of Florida "Genome Size and Chromosome Number Variation Among Caladium Species and Somaclonal Variants" (W490) 3:10pm Thomas Debener, Leibniz University of Hannover "Multi-Pathotype Resistance to Black Spot in Roses Conferred By the Rdr1 R-Gene- Family" (W491)

57 Sunday - January 11, 2015

1:30pm - 3:40pm Plant Cytogenetics - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: James Higgins, University of Leicester and Susan Armstrong, University of Birmingham

1:30pm Steve Barnes, SESVANDERHAVE NV "How Can We Use Plant Cytogenetics to Solve Problems in Practical Plant Breeding?" (W526) 1:50pm Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ "Function of DNA Synthesis Factors in Meiotic Recombination" (W527) 2:10pm Isabelle M Henry, Plant Biology and Genome Center, UC Davis "Effect of the Boy-Named Sue Locus on Polyploid Meiosis in Arabidopsis" (W528) 2:30pm Stefan Heckmann, University of Birmingham - School of Biosciences "Challenging Our View on Meiosis - Luzula elegans, a Plant with a Holocentric Chromosome Structure, Shows Alternative Meiotic Chromatid Segregation" (W529) 2:50pm Chloe Girard, INRA Centre de Versailles-Grignon "FIDGETIN-LIKE 1 Limits Non-Interfering Meiotic Crossovers, Independently of FANCM, by Regulating the Invasion Step of Homologous Recombination" (W530) 3:10pm Trude Schwarzacher, University of Leicester "Repetitive DNA in Plant Genomes" (W531)

1:30pm - 3:40pm Plant Reproductive Genomics - SAN DIEGO Organizer: Jim Leebens-Mack, University of Georgia

1:30pm Jim Leebens-Mack, University of Georgia Welcome Remarks 1:35pm Zach Lippman, Cold Spring Harbor Laboratory "Meristem Maturation and Flower Production in the Solanaceae" (W555) 1:55pm Annette Becker, Justus-Liebig-University "Sequencing Output at Work - Resolving Carpel Gene Origins" (W556) 2:15pm Yaowu Yuan, The University of Connecticut "Developmental Genetics of Pollinator-Associated Floral Traits" (W557) 2:35pm Péter Szövényi, University of Zurich "Evolution of Phase-Biased Gene Expression in Land Plants" (W558) 2:55pm Stuart McDaniel, University of Florida "Genetic Conflict and the Evolution of Sporophyte-Specific Gene Expression in Ceratodon purpureus" (W559) 3:15pm Alex Harkess, Department of Plant Biology, University of Georgia "The Origin and Evolution of Dioecy and Sex Chromosomes in Asparagus" (W560)

58 Sunday - January 11, 2015

1:30pm - 3:40pm Sugar Cane Sequencing Initiative - ROYAL PALM SALON 1-2 Organizers: Glaucia M Souza, Biochemistry Department - University of São Paulo , Robert Henry, University of Queensland QAAFI and Ray Ming, University of Illinois at Urbana-Champaign

1:30pm Glaucia M Souza, Institute of Chemistry - University of São Paulo "The Genome Sequence of a Sugarcane Hybrid: Exploring Gene Alleles, Transcripts and Regulatory Elements" (W755) 1:50pm David Heckerman, Microsoft "Insights from a Long-Read Assembly of the Complex Sugarcane Genome" (W756) 2:10pm Hayan Lee, Stony Brook University "Sugarcane Genome De Novo Assembly Challenges" (W757) 2:30pm Marie-Anne Van Sluys, GaTE Lab - Botanica - Universidade de São Paulo "Sugarcane BAC Sequence Genomic Platform" (W758) 2:50pm Renato Vicentini, University of Campinas - UNICAMP "Transcriptional Dynamics of Source-Sink Balance in Sugarcane, and the R570 Transcriptome to Support Sugarcane Genome Sequencing Initiative" (W759) 3:10pm Ching Man Wai, University of Illinois at Urbana-Champaign "Transcriptomic Analysis of Extreme Segregants in an Interspecific Saccharum F2 Population" (W760)

1:30pm - 3:40pm Transposable Elements - GOLDEN BALLROOM Organizers: Jianxin Ma, Purdue University and Olivier Panaud, University of Perpignan 1:30pm Hui Guo, Plant Genome Mapping Laboratory, University of Georgia "Recent Expansion of a Novel LTR Retrotransposon in Sorghum bicolor" (W796) 1:48pm David Bertioli, University of Georgia "Transposable Elements in the A and B Genomes of Peanut" (W797) 2:06pm Chunguang Du, Montclair State University "Plant Genome Reshuffling via Rolling Circle Helitrons" (W798) 2:24pm Thomas Wicker, University of Zurich "Genome-Wide Analysis of Transposon Insertion and Excision Patterns in the Two Rice Species O sativa and O glaberrima" (W799) 2:42pm Guojun Yang, University of Toronto "Auto-Regulation of a Rice Mariner-like Element By a Subterminal Transposase Binding Site" (W800) 3:00pm Ning Jiang, Michigan State University "Transposition of a Rice Mutator-like Element in Yeast" (W801) 3:18pm Alan H Schulman, LUKE & University of Helsinki "BARE, a Multiply Mobile Retrotransposon" (W802)

59 Sunday - January 11, 2015

1:30pm - 3:40pm The National Plant Genome Initiative -- Research Challenges and Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, the Microbiome? - SUNSET Organizers: Catherine Ronning, US Dept of Energy , Diane Jofuku Okamuro, National Science Foundation , Ed Kaleikau, USDA NIFA and Jack K Okamuro, USDA ARS

1:30pm Gary Atlin, Bill & Melinda Gates Foundation 1:50pm Edgar Spalding, University of Wisconsin Madison 2:10pm Leon Kochian, Robert W Holley Center, USDA-ARS & Cornell University 2:30pm Jan E Leach, Colorado State University 2:50pm Venkatesan Sundaresan, University of California-Davis 3:10pm Dave Weston, Oak Ridge National Laboratory 3:30pm Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS

1:30pm - 5:00pm Cacao Genomics Workshop - ROYAL PALM SALON 3-4 Organizer: David N Kuhn, USDA ARS SHRS

1:30pm Introductory Remarks 1:35pm Emmanuelle Muller, CIRAD-UMR BGPI "Study on the Origin of Cacao Swollen Shoot Virus and Its Dispersal on Cacao Trees in West Africa" (W093) 1:55pm Judith K Brown, University of Arizona "Cacao Swollen Shoot Virus: A Re-Emergent, Mealybug-Transmitted Virus Spreading in West Africa" (W094) 2:15pm Bryan Bailey, Sustainable Perennial Crops Lab, USDA-ARS "The Biology, Genetic Diversity, and Genomics of Moniliophthora roreri, Causal Agent of Cacao Frosty Pod Rot" (W095) 2:35pm Shahin Ali, USDA-ARS "Biology and Genomics of Phytophthora spp: Fight Against a Potential Global Chocolate Famine" (W096) 2:55pm Stefan E Royaert, Mars Center for Cocoa Science - MARS Inc "Interspecific Hybridization Between Theobroma cacao and Theobroma grandiflorum" (W097) 3:15pm Andrew Fister, The Pennsylvania State University "Functional Genomics of Defense Response in Theobroma Cacao" (W098) 3:35pm Break 3:50pm Stefan E Royaert, Mars Center for Cocoa Science - MARS Inc "Identification of QTL Involved in the Production of Rooted Cuttings in a Segregating Mapping Population of Theobroma cacao L in Brazil" (W099) 4:10pm Osman A Gutierrez, USDA ARS SHRS "Association Mapping in Cacao Populations from Hawaii" (W100) 4:30pm Karina Peres Gramacho, Cacao Research Center (CEPEC/CEPLAC) "Classical and 'omics' Approaches to Control Witches' Broom Disease of Cacao" (W101)

60 Sunday - January 11, 2015

1:30pm - 6:10pm NRSP-8 Animal Genome - GOLDEN WEST Organizer: Stephen N White, USDA ARS Animal Disease Research

1:30pm Kim Worley, Baylor College of Medicine "Improving the Reference - Better Genomes for the Sheep and the Cow" (W472) 2:15pm John Hickey, The Roslin Institute, University of Edinburgh "Genomic Selection 20" (W473) 3:00pm Break 3:15pm Hans Cheng, USDA, ARS, ADOL "Integrative Genomics to Provide Basic and Applied Knowledge to Control Marek's Disease in Chicken" (W474) 4:00pm Elisabetta Giuffra, INRA, UMR de Génétique Animale et Biologie Intégrative "The Functional Annotation of Animal Genomes (FAANG) Initiative" (W475) 4:45pm FAANG Roundtable Discussion 5:15pm NRSP-8 Busniess Meeting

1:30pm - 6:10pm Palm Genomics & Genetics - TOWNE Organizers: Frederique Aberlenc-Bertossi, Institut de Recherche pour le Développement and Norbert Billotte, CIRAD

1:30pm Estelle Jaligot, CIRAD, UMR DIADE "A Story of Flasks and Flowers: New Perspectives in the Search for Markers of the Mantled Somaclonal Variation of Oil Palm" (W492) 1:50pm Alexandre Alonso Alves, Embrapa Agroenergy "Genomic Characterization of E oleifera Polymorphic Sites Based on Physical Mapping to the E guineensis Genome" (W493) 2:10pm David Cros, CIRAD "Genomic Selection for Heterosis without Dominance in Multiplicative Traits: Case Study of Bunch Production in Oil Palm" (W494) 2:30pm Chee-Keng Teh, Sime Darby Technology Centre Sdn Bhd "Genome-Wide Association Study of Oil Palm Mesocarp Oil Yield Content and Its Application for Marker Selection" (W495) 2:50pm Rajinder Singh, Malaysian Palm Oil Board "The Identification of the Fruit Colour Gene of Oil Palm and Its Implications in Improving Palm Oil Yield" (W496) 3:10pm Break 3:25pm Maxime Mercière, Cirad "Identification and Development of New Polymorphic Microsatellite Markers for Main Causal Agent of Oil Palm Basal Stem Rot Disease using Ganoderma boninense Genome Assembly" (W497) 3:45pm Alan W Meerow, USDA, ARS, SHRS "Phylogeny and Historical Biogeography of the Cocosoid Palms (Arecaceae, Arecoideae, Cocoseae) Inferred from Sequences of Six WRKY Gene Family Loci" (W498)

61 Sunday - January 11, 2015

4:05pm Joel A Malek, Weill Cornell Medical College in Qatar "Ancient Population Structure in Phoenix dactylifera Revealed By Genome-Wide Genotyping of Geographically Diverse Date Palm Cultivars" (W499) 4:25pm Robert R Krueger, USDA-ARS National Clonal Germplasm Repository for Citrus & Dates "National Date Palm Germplasm Repository" (W500) 4:45pm Osman Radwan, University of Illinois at Urbana-Champaign "Sustainable and Genomics Approaches for Date Palm Improvement to Biotic and Abiotic Stresses" (W501)

3:00pm - 4:00pm Coffee Break - ATLAS FOYER

3:00pm - 8:30pm Exhibits & Posters Open - GRAND EXHIBIT HALL

4:00pm - 6:10pm Post-transcriptional Gene Regulation - ROYAL PALM SALON 1-2 Organizers: Anireddy S Reddy, Colorado State University and Asa Ben-Hur, Colorado State University 4:00pm Brian D Gregory, University of Pennsylvania "Global analysis of RNA-protein interactions and RNA secondary structure in eukaryotes" (W728) 4:25pm Klemens Hertel, University of California, Irvine (W729) 4:50pm Yiliang Ding, John Innes Centre "A Transformative Platform Deciphers the RNA Structural Code in Living Cells" (W730) 5:15pm Yoseph Barash, Perleman School of Medicine, University Pennsylvania (W731) 5:40pm Ana Conesa, Centro de Investigación Príncipe Felipe "Functional Alternative Isoform Expression Analysis Using Long Read Technologies" (W732)

4:00pm - 6:10pm Coffee Genomics - ESQUIRE Organizers: Marcela Yepes, Cornell University, Philippe Lashermes, Institut de Recherche pour le Développement and Rod A Wing, University of Arizona 4:00pm Alvaro Gaitan, Centro Nacional de Investigaciones de Cafe, CENICAFE "Long-Read Deep Sequencing and Assembly of the Allotetraploid Coffea arabica cv Caturra and its Maternal Ancestral Diploid species Coffea eugenioides" 4:40pm Michele Morgante, Università di Udine and Istituto di Genomica Applicata "Progress report on the sequencing and assembly of the allotetraploid Coffea arabica var Bourbon genome" (W158) 5:00pm Alexandre de Kochko, IRD UMR DIADE "Dihaploid Coffea arabica Genome Sequencing and Assembly" (W159) 5:20pm Romain Guyot, IRD UMR DIADE "Transposable Element Distribution, Abundance and Impact in Genome Evolution in the Genus Coffea" (W160) 5:40pm Elaine S Dias, UNESP - Universidade Estatual Paulista "Impact of Transposable Elements on the Evolution of Coffea arabica (Rubiaceae)" (W161)

62 Sunday - January 11, 2015

4:00pm - 6:10pm Cotton Genome Initiative (ICGI) - PACIFIC SALON 2 Organizers: David Stelly, Texas A&M University and Tianzhen Zhang, Nanjing Agricultural University

4:00pm Rick Masonbrink, Iowa State University "CenH3 Evolution in Diploids and Polyploids of Three Angiosperm Genera" (W192) 4:20pm Justin T Page, Brigham Young University "Gene Conversion and Cotton Allotetraploid Evolution" (W193) 4:40pm Jinping Hua, China Agricultural University "Comparison of Four Mitochondrial Genomes (Gossypium) and Analysis on the Candidate Genes of Two Cytoplasmic Male Sterile Lines in Cotton" (W194) 5:00pm Qingxin Song, UT Austin "DNA Methylation Dynamics during Fiber and Ovule Development" (W195) 5:20pm Daojun Yuan, Huazhong Agricultural University "Draft Genome of the High-Fibre-Quality Allotetraploid Cotton Gossypium barbadense" (W196) 5:40pm David Stelly, Texas A&M University "1-Minute Oral Presentations" (W197)

4:00pm - 6:10pm Cucurbit - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: Amnon Levi, USDA ARS, US Vegetable Laboratory and Yaakov (Kobi) Tadmor, Newe Yaar Research Center, ARO

4:00pm Yong Xu, National Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences "Resemblance and Differences in the Feral (C lanatus subsp lanatus) and Cultivated Watermelon (C lanatus subsp vulgaris) Genomes" (W204) 4:20pm Zhangjun Fei, Cornell University "Genome Sequencing of Cucurbita Species" (W205) 4:40pm Nurit Katzir, Agricultural Research Organization (ARO) "Transcriptome-Based Ultra-High Resolution QTL Analysis of Fruit Quality Traits in Melon" (W206) 5:00pm Umesh K Reddy, Department of Biology, West Virginia State University "Genome Wide Association (GWAS) Mapping of Trichome Density and Length in Watermelon" (W207) 5:20pm Linyong Mao, Boyce Thompson Institute for Plant Research "Sequencing and Assembly of the Genome of an American Watermelon Ecotype, Charleston Gray" (W208) 5:40pm Amnon Levi, USDA, ARS, US Vegetable Laboratory "A Major QTL Is Associated with Fusarium Wilt Race 1 Resistance in Watermelon" (W209)

63 Sunday - January 11, 2015

4:00pm - 6:10pm Domestication Genomics - SUNSET Organizers: Briana L Gross, University of Minnesota Duluth and Allison Miller, Saint Louis University

4:00pm Roberto Papa, Università Politecnica delle Marche "The Consequence of Domestication in the Common Bean" (W225) 4:20pm C Robin Buell, Michigan State University "Loci Involved in Domestication and Improvement of Cultivated Potato As Revealed through Genotyping of Two Diversity Panels" (W226) 4:40pm Justin Fay, Washington University School of Medicine "Yeast" (W227) 5:00pm Shelby L Ellison, University of Wisconsin-Madison "The Origin of Orange Pigment in Carrot" (W228) 5:20pm Matthew Hufford, Iowa State University "Maize and Teosinte" (W229) 5:40pm Jared E Decker, University of Missouri "Admixture and Selection after Initial Domestication of Cattle" (W230)

4:00pm - 6:10pm Genomics of Plant Development - PACIFIC SALON 6-7 (2ND FLOOR) Organizer: Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC

4:00pm Molly Megraw, Oregon State University "Transcription Start Site Sequencing Strongly Informs Gene Regulatory Network Inference" 4:20pm Venu (Kal) Kalavacharla, Delaware State University "Understanding Disease Resistance Signaling in Common Bean (Phaseolus vulgaris L) through Integrated Epigenomic and Transcriptomic Analyses" 4:40pm Justin E Anderson, University of Minnesota "The Search for Functional Structural Variants and Adaptive Traits in Soybean" 5:00pm Andrea L Eveland, Donald Danforth Plant Science Center "Inflorescence Architecture in Grasses: Regulatory Networks and Translational Genomics" (W364) 5:20pm Naoufal Lakhssassi, Department of Plant Soil and Agricultural Systems, SIUC "Four New Soybean Sources Carrying Novel SACPD-C Alleles Containing High Level of Seed Stearic Acid and Conferring Resistance to Soybean Cyst Nematode" (W366) 5:40pm Abdelhafid Bendahmane, INRA and INRA-URGV "Mutation Breeding in Crops and Translational Development Research" (W365)

64 Sunday - January 11, 2015

4:00pm - 6:10pm Plant and Animal Paleogenomics - PACIFIC SALON 3 Organizer: Jerome Salse, INRA Clermont-Ferrand

4:00pm Welcome Remarks 4:05pm Gerald A Tuskan, Oak Ridge National Laboratory "Key Aspects of the Plant Genomes" (W514) 4:25pm Marcel Amills, Center for Research in Agricultural Genomics "Copy Number Variation in Livestock and Companion Animals: A Window to Domestication and Other Evolutionary Processes" (W515) 4:45pm Aoife McLysaght, Smurfit Institute of Genetics "Dosage Sensitive Genes in Evolution and Disease" (W516) 5:05pm Matteo Pellegrini, University of California, Los Angeles "Genic GC3 Content and DNA Methylation Patterns in Plant and Animal Genomes’" (W517) 5:25pm Michael Axtell, Penn State University "Conserved and Divergent Features of Land Plant miRNAs and Endogenous siRNAs" (W518) 5:45pm Martin A Lysak, CEITEC, Masaryk University "Major Trends in Genome Evolution of Crucifers" (W519)

4:00pm - 6:10pm Recombination - mechanisms - PACIFIC SALON 1 Organizer: Raphael Mercier, INRA -IJPB

4:00pm Thorben Sprink, Julius Kühn Institut "The Function of the Plant Double Strand Break Initiating Proteins SPO11-1 and SPO11-2 Is Sequence and to a Certain Extent Species Specific" (W625) 4:20pm Eugenio Sanchez-Moran, School of Biosciences University of Birmingham "Histone H11, Meiotic Chromosome Axis and Recombination" (W626) 4:40pm Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ "Functional Interaction of DMC1 and RAD51 during Meiotic Recombination in Arabidopsis" (W627) 5:00pm Matthieu Falque, INRA/CNRS/Univ Paris-Sud/AgroParisTech "Combined Fluorescent and Electron Microscopic Imaging Unveils the Specific Properties of Two Classes of Meiotic Crossovers" (W628) 5:20pm Ian R Henderson, University of Cambridge "Genetic and Epigenetic Control of Arabidopsis Meiotic Recombination Hotspots" (W629) 5:40pm Pierre Sourdille, INRA UMR Genetics, Diversity & Ecophysiology of Cereals "Exploitation of the First Sequenced Wheat Chromosome (3B) to Study the Variation of the Recombination Pattern" (W630)

65 Sunday - January 11, 2015

4:00pm - 6:10pm Sequencing Complex Genomes - GOLDEN BALLROOM Organizer: Robert Henry, University of Queensland QAAFI

4:00pm Perla Hamon, IRD UMR DIADE "The International Coffea Genome13 Project: A Way to Understand the Evolutionary History of Coffea Genomes and Unlock the Potential Use of Wild Species in Breeding?" (W649) 4:20pm Jacob Tennessen, Oregon State University "Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed By Dense Targeted Capture Linkage Maps" (W650) 4:40pm Thiru Ramaraj, National Center for Genome Resources "De Novo Assembly of Plant Genomes: Hybrid Approaches for Heterogeneous NGS Data" (W651) 5:00pm Martin Mascher, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) "In Favor of a Whole-Genome Shotgun: Assembling and Anchoring the Hexaploid Bread Wheat Genome" (W652) 5:20pm Angélique D'Hont, CIRAD, UMR AGAP "Toward a Reference Sequence of the Gene-Rich Part of the Highly Polyploid Sugarcane Genome" (W653) 5:40pm Guy Kol, NRGENE Ltd "Elucidating Intra-Species Genome Complexity By Using a Novel De Novo Assembly Tool to Assemble Two Maize Inbred Lines" (W654)

4:00pm - 6:10pm Sex Chromosomes and sex determination - ROYAL PALM SALON 5-6 Organizers: Abdelhafid Bendahmane, INRA and Ray Ming, University of Illinois at Urbana-Champaign

4:00pm Susana M Coelho, CNRS-UPMC "Genomic and Evolutionary Features of the Brown Alga Ectocarpus UV Sex Chromosomes" (W655) 4:20pm Takashi Akagi, Graduate School of Agriculture, Kyoto University "Ogi, a Y-Encoded Small-RNA, Acts for Sex Determination in Diospyros Plant Species" (W656) 4:40pm Anjan K Banerjee, Indian Institute of Science Education and Research Pune (IISER Pune) "Understanding Floral Development and Sex Expression in Dioecious Coccinia grandis" (W657) 5:00pm Josh Hough, University of Toronto "Population Genetics of X and Y Chromosomes in the Dioecious Plant Rumex hastatulus" (W658) 5:20pm Stephen DiFazio, West Virginia University "Contrasting Mechanisms of Sex Determination in the Salicaceae" (W659) 5:40pm Joel A Malek, Weill Cornell Medical College in Qatar "The XY Sex Chromosome in Date Palm (Phoenix dactylifera): From Discovery and Mapping to Sequencing" (W660)

66 Sunday - January 11, 2015

4:00pm - 6:10pm Tripal Database Network and Initiatives - CALIFORNIA Co-chairs: Stephen P Ficklin, Washington State University and Dorrie Main, Washington State University

4:00pm Stephen P Ficklin, Washington State University "Tripal Overview & Future Developments" (W803) 4:30pm Lacey-Anne Sanderson, University of Saskatchewan "Extending Tripal for Specialized Display and Management of Diversity and Breeding Data" (W804) 5:00pm Sook Jung, Washington State University "GDR/CottonGen: Converting Legacy Sites to Tripal" (W805) 5:15pm Christopher Childers, USDA/Agricultural Resarch Service/National Agricultural Library "The i5k Workspace@Nal - a Tripal Based Arthropod Genome Portal" (W806) 5:30pm Vivek Krishnakumar, J Craig Venter Institute "Tripal within the Arabidopsis Information Portal (AIP)" (W807) 5:45pm Ethalinda Cannon, Iowa State University "Tripal within the Legumes Genomics Community" (W808) 6:00pm Margaret Staton, University of Tennessee Institute of Agriculture "The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development" (W809)

6:15pm - 7:00pm Plenary Talk - TOWN AND COUNTRY Chair: Hans Cheng, USDA, ARS, ADOL 6:15pm Philip Bourne, National Institutes of Health "NIH Data/Big Data – Implications for PAG"

7:00pm - 8:30pm Opening Reception - GRAND EXHIBIT HALL

67 Monday - January 12, 2015

7:00am - 8:00am Continental Breakfast - GOLDEN BALLROOM

7:00am - 5:00pm Registration - ATLAS FOYER

8:00am - 9:30am Plenary Talks - TOWN AND COUNTRY Chair: David Grant, USDA-ARS-CICGRU and Iowa State University

8:00am Beth Shapiro, University of California Santa Cruz “The evolutionary consequences of interspecies hybridization: insights from ancient and modern bear genomes”

8:45am Trey Ideker, UC San Diego “Interpreting genome variants and mutations using a unified human genetic network”

9:30am - 11:30am Coffee Break - GRAND EXHIBIT HALL

9:30am - 5:00pm Exhibits & Posters Open - GRAND EXHIBIT HALL

10:00am - 11:30am Poster Session - Even Numbers - GRAND EXHIBIT HALL

11:30am - 3:00pm International Sheep Genome Consortium - TOWNE Chair: Noelle Cockett, Utah State University Co-Chair: James Kijas, CSIRO Agriculture Flagship

11:30am Welcome Remarks 11:35am Rudiger Brauning, AgResearch Ltd "LD Chip: Design for Parentage, Imputation and Functional SNPs" 12:00pm Carole R Moreno, INRA "LD Chip: Design for Parentage, Imputation and Functional SNPs" 12:25pm Kim C Worley, Baylor College of Medicine "Improvement to OARv31 Using Long Read Technology" 12:55pm Alan L Archibald, The Roslin Institute and R(D)SVS, University of Edinburgh "Functional Annotation of Farm Animal Genomes (FAANG)" 1:25pm James Kijas, CSIRO Agriculture Flagship "SheepGenomesDB: Now and In the Future" 1:55pm Daniel G Bradley, Trinity College Dublin "Genome Sequencing from Historical Parchment" 2:10pm Matthew D Teasdale, Trinity College Dublin "Genome Sequencing from Historical Parchment" 2:25pm Shannon Clarke, AgResearch Ltd Invermay Agricultural Centre "Genotype By Sequencing (GBS)" 2:40pm Rudiger Brauning, AgResearch Ltd "Genotype By Sequencing (GBS)" 2:55pm Concluding Remarks 68 Monday - January 12, 2015

12:00pm - 12:50pm Lunch (Vouchers Provided) - LION FOUNTAIN COURTYARD

12:50pm - 3:00pm Genomics of Tissue Regeneration in Plants and Animals - ESQUIRE Organizer: Moshe Reuveni, ARO, Volcani Center

12:50pm Moshe Reuveni, ARO, Volcani Center "Plant Regeneration Requires Cellular Communication" (W695) 1:10pm Ayelet Voskoboynik, Institute of Stem Cell Biology and Regenerative Medicine Stanford University "Botryllus schlosseri, a Model Organism for the Study of Tissue Regeneration and the Evolution of Immunity" (W696) 1:30pm Kenneth D Birnbaum, New York University "The Trajectory of Transdifferentiating Cells in Root Regeneration" (W697) 1:50pm Vladimir Mashanov, University of Puerto Rico, Department of Biology "Transcriptomics of Neural Regeneration in Echinoderms: A Roadmap for Future Research" (W698)

12:50pm - 3:00pm Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Christopher D Town, J Craig Venter Institute and Blake C Meyers, University of Delaware

12:50pm Eva Huala, Phoenix Bioinformatics "TAIR as a Model for Database Sustainability" (W043) 1:05pm Sean Tobias May, University of Nottingham "What's New at NASC?" (W042) 1:15pm Manpreet S Katari, New York University "Cross-Species Network Analysis Using VirtualPlant" (W039) 1:35pm Chia-Yi Cheng, J Craig Venter Institute "A Walk through the Araport Web Site" 1:55pm Marie Bolger, RWTH Aachen University "App Development within the MapMap Project" 2:15pm Justin Preece, Dept of Botany & Plant Pathology, Oregon State University "A Plant Ontology Web Service for the AIP" 2:35pm Jason R Miller, J Craig Venter Institute "Exposing Web Services for the Arabidopsis Information Portal" (W041) 2:55pm Matt Vaughn, Texas Advanced Computing Center "Developing Applications for the Arabidopsis Information Portal" (W040)

69 Monday - January 12, 2015

12:50pm - 3:00pm Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding - ROYAL PALM SALON 4,5,6 Organizers: Graham McLaren, Generation Challenge Programme and Mark Sawkins, Generation Challenge Programme

12:50pm Graham McLaren, Generation Challenge Programme "Overview and Progress on Developing the Integrated Breeding Platform" (W699) 1:10pm Mark Sawkins, Generation Challenge Programme "Breeding View - Statistical Workflows for Plant Breeding " (W700) 1:30pm Abhishek Rathore, ICRISAT "ISMU 20: A Multi-Algorithm Pipeline for Genomic Selection" (W701) 1:50pm Susan McCouch, Cornell University "CG Back Office : Working with IBP to Deliver High Density Genomics Tools" (W702) 2:10pm David E Matthews, USDA ARS "A Public API for Crop Breeding Data" (W703) 2:30pm Bao Lam Huynh, University of California - Riverside "Application of Information Systems in Collaborative Cowpea Breeding for Sub- Saharan Africa" (W704)

12:50pm - 3:00pm Grass Genome Initiative (IGGI) - SUNRISE Organizers: Jeffrey L Bennetzen, University of Georgia and Katrien M Devos, University of Georgia

12:50pm Kulvinder Gill, Washington State University "Structure and Function of Ph1 Genes in Wheat and Other Cereals" (W384) 1:15pm Rajeev K Varshney, ICRISAT "A Reference Genome and HapMap for Pearl Millet (Pennisetum glaucum)" (W385) 1:40pm Jeffrey L Bennetzen, University of Georgia "Transposable Element Histories Across a Broad Sampling of Panicoid Grasses" (W386) 2:05pm Stephen Byrne, Molecular Biology and Genetics, Aarhus University "Exploring an Annotated Sequence Assembly of the Perennial Ryegrass Genome for Genomic Regions Enriched for Trait Associated Variants" (W387) 2:30pm Korbinian Schneeberger, Max Planck Institute for Plant Breeding Research "Co-Occurrence of Long-Lasting Retrotransposon Activity and Lack of Symmetric CG Methylation in the Genome of Arabis alpina" (W388)

70 Monday - January 12, 2015

12:50pm - 3:00pm NCBI Genome Resources - SUNSET Organizers: Kim D Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH) and Tatiana Tatusova, National Center for Biotechnology Information (NCBI/NLM/NIH)

12:50pm Ilene Mizrachi, National Center for Biotechnology Information (NCBI/NLM/NIH) "Improving the Flow of Data to National Center of Biotechnology Information Sequence Repositories, SRA and Genbank" (W452) 1:15pm Jennifer Lee, National Center for Biotechnology Information (NCBI/NLM/NIH) "Variation at NCBI: Resources, Tools and Submissions" (W453) 1:40pm Francoise Thibaud-Nissen, NCBI/NLM/NIH "Update on the Eukaryotic Genome Annotation Pipeline" (W454) 2:05pm Kim D Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH) "From Genes to Genomes – New Features and Data Access" (W455) 2:30pm Tatiana Tatusova, National Center for Biotechnology Information (NCBI/NLM/NIH) "Annual Report" (W456)

12:50pm - 3:00pm Plant Transgene Genetics - TOWN AND COUNTRY Organizers: Gan-Yuan Zhong, USDA-ARS GGRU and Bala Pudota, Dow AgroSciences LLC

12:50pm Robert M Stupar, Department of Agronomy and Plant Genetics, University of Minnesota "Comparison of Genomic Structural Variation Associated with Cultivars, Mutagenized, and Transgenic Soybean Plants" (W561) 1:10pm Isabelle M Henry, Plant Biology and Genome Center, UC Davis "Transient and Stable Heterologous Transgene Expression to Investigate the Mechanism of Sex Determination in Persimmon" (W562) 1:30pm Tom Clemente, University of Nebraska "Towards the Production of a Margarine Type Vegetable Oil in Soybean" (W563) 1:50pm Tristan Coram, Dow AgroSciences "In-Depth Characterization of Transgenic Events Carrying Targeted Insertions at the Maize ZmIPK1 Locus" (W564) 2:10pm Fredy Altpeter, University of Florida - IFAS "Transformation Efficiency, Transgene Integration Complexity and Expression Stability Following Biolistic or Agrobacterium-mediated Transformation of Sugarcane" 2:30pm Senthil Subramanian, South Dakota State University "MicroRNA Regulation of Auxin-Cytokinin Balance during Soybean Nodule Development" (W565)

71 Monday - January 12, 2015

12:50pm - 3:00pm Computer Demo 2 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University and Brian Smith- White, National Center for Biotechnology Information (NCBI/NLM/NIH)

12:50pm Toby Hunt, Wellcome Trust Sanger Institute "New Tools for Manual Genome Annotation in Eukaryotes: Zmap/Otterlace and Vega" (C08) 1:10pm Victoria Carollo Blake, USDA ARS WRRC "The Triticeae Toolbox (T3): From the Ground Up" (C09) 1:30pm Carson M Andorf, USDA-ARS "The Reinvention of MaizeGDB" (C10) 1:50pm Andrew D Farmer, National Center for Genome Resources "Methods for Collecting, Integrating, and Displaying Complex Genetic Data, Using the Legume Information System and PeanutBase" (C11) 2:10pm Hidemasa Bono, Database Center for Life Science "Facilitating the Use of Next-Gen Sequence Data for Data-Driven Biology" (C12) 2:30pm Sook Jung, Washington State University "How to Use GDR, the Genome Database for Rosaceae" (C13) 2:45pm Jing Yu, Washington State University "CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research" (C14)

12:50pm - 3:00pm Affymetrix: Whole-genome analysis of diploid and polyploid species: expert-designed custom arrays for global applications - PACIFIC SALON 3 Organizer: Laurie Durlester, Affymetrix, Inc Chair: Shantanu Kaushikkar, Affymetrix Inc

Affymetrix offers a suite of genomics tools that facilitate streamlined and user-friendly workflows, including assays, detection, and analysis Speakers at the Affymetrix workshop will be discussing their experiences with Axiom® Genotyping Arrays and GeneChip® Expression Arrays for analyzing diploid and polyploid plant and animal genomes

12:50pm Andrew Breakspear, John Innes Centre "The root hair ‘infectome’ of Medicago truncatula: secrets of hair removal"

72 Monday - January 12, 2015

12:50pm - 3:00pm Thermo Fisher Scientific (Formerly Life Technologies™) - Genetic analysis approaches in agriculture biotechnology - GOLDEN WEST Organizer: Delaney Wermuth, Thermo Fisher Scientific

As a member of the Thermo Fisher Scientific family of brands, Life Technologies™ products and services offer high-quality, innovative life science solutions for every plant and animal research or breeding lab Attend our workshop to learn how Ion AmpliSeq™ genotyping-by-sequencing and digital PCR solutions help address agricultural biotechnology challenges

12:50pm Jenny Xiao, Thermo Fisher Scientific "Solutions for plant and animal research and breeding" 1:00pm Lex Flagel, Monsanto Company "The genetic architecture of western corn rootworm resistance to the Cry3Bb1 Bt protein" 1:30pm Eric Jackson, General Mills "The bulk allele discrimination (BAD) assay for plant genotyping: A case study in hexaploid oat" 2:00pm James C Schnable, University of Nebraska-Lincoln "Fast turn-around genotyping without a reference genome using the Hi-Q™ sequencing kit on the Ion Proton™ System" 2:30pm Li Song, University of Missouri "Application of digital PCR to analyzing transgenic soybeans"

12:50pm - 3:00pm GeneSeek - PACIFIC SALON 2 Organizer: Jermey Walker, GeneSeek Title: Next Generation Genomic Solutions for Agri-Research

12:50pm Jeremy Walker, GeneSeek "GeneSeek Custom Genotyping Solutions"

1:10pm Kurt Lamour, University of Tennessee "Monsterplex: a high capacity technology for targeted sequencing and large scale genotyping"

1:30pm David Douches, Michigan State University "The Contribution of the genome-wide SNPs to Potato Breeding and Genetics"

1:50pm Sofia Ortega, University of Florida "Identification of candidate genes associated with reproduction in dairy cattle"

2:10pm Matt Hickenbotham, Thermo Fisher Scientific "Custom Genotype by Sequencing Panels Utilizing Ampliseq and Ion Torrent Technology"

73 Monday - January 12, 2015

12:50pm - 3:00pm Keygene: From Leads to Seeds - ROYAL PALM SALON 1,2,3 Organizer: Fayaz Khazi, KeyGene Inc Chair: Fayaz Khazi, KeyGene Inc

The Food and Agriculture Organization estimates that 70% more food production over the next four decades is needed to nourish a human population projected to exceed 9 billion by the year 2050 Such a generational challenge cannot be met by traditional fragmented approaches to research and development Rather, an interdisciplinary and a more integrated, "Leads to Seeds" approach to agricultural is warranted to reach minimum metrics of global food security KeyGene's proprietary technology platforms in molecular breeding, its expertise in genomics, transcriptomics and digital phenotyping of diverse crops has positioned the company as a leader in the field Through its platforms and strategic collaborations with its industry partners, KeyGene seeks to enable expedited crop innovation and crop improvement Several examples of KeyGene's technologies will be showcased in support of the "Leads to Seeds" theme 12:50pm Michiel JT van Eijk, Keygene NV "KeyGene’s accelerated molecular breeding platform: the first decade of a sequence- based revolution" 1:10pm Rick Nipper, Floragenex "Past, Present and Future: Application of RAD-Seq and Sequenced Based Genotyping in Eggplant, Miscanthus and Barley" 1:30pm Anker Sørensen, KeyGene "Expedited Trait Development at KeyGene" 1:50pm Fayaz Khazi, KeyGene Inc "Digital Phenotyping 20 and Integrated Agriculture"

12:50pm - 3:00pm Kyazma's JoinMap and MapQTL Demonstration – PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Johan Van Ooijen, Kyazma BV Live demonstrations of the genetic mapping and QTL analysis software of Kyazma ®

• JoinMap ® 4·1 – Genetic mapping made easy • MapQTL ® 6 – User-friendly power in QTL analysis 12:50pm JoinMap 4·1 – General Demonstration 1:40pm JoinMap 5 – Very Early Preview 2:00pm MapQTL 6 – General Demonstration

12:50pm - 3:00pm New England Biolabs - Recent advances in NGS sample prep - PACIFIC SALON 1 Organizer: Kari Goodwin, New England Biolabs Title: Recent Advances in Sample Preparation for Next Generation Sequencing 12:50pm Introduction 1:00pm Jonathan Dennis, Florida State University “The surprising organization of complex genomes”

1:40pm Daniela Munafo, New England Biolabs “Increasing Sensitivity of Next Generation Sequencing-based Transcriptome Profiling by Selectively Depleting Abundant RNAs”

2:05pm Fiona Stewart, New England Biolabs “Improving NGS library prep workflow performance and flexibility with new product formulations and protocols” 74 Monday - January 12, 2015

12:50pm - 3:00pm Roche Diagnostics Corporation - GOLDEN BALLROOM Organizer: Sabine Dierolf, Roche Applied Science Title: Applications of Target Enrichment in Diverse Plant and Animal Studies

This workshop will feature Roger Wiseman of the University of Wisconsin and his talk “Target capture and deep sequencing for characterization of the major histocompatibility complex in macaques” Several talks will be presented describing the use of custom target enrichment products to enable discovery in the sequencing of animals and plants Target enrichment is a flexible technology allowing the scientist to capture and sequence specific regions of interest Roche has design expertise with hundreds of organisms to enable further discovery in even unconventional genomes or those with missing or incomplete reference models.

3:00pm - 4:30pm Poster Session - Odd Numbers - GRAND EXHIBIT HALL

3:00pm - 5:00pm Coffee Break - GRAND EXHIBIT HALL

4:30pm - 6:30pm Brachypodium Community Organizational Meeting - SHEFFIELD Organizer: John Vogel, DOE Joint Genome Institute Please join us for an informal discussion of new resources and other developments relevant to the Brachypodium research community Topics will include a new collaborative project to sequence and characterize 2,000 chemical and radiation mutants, new tools for studying functionally redundant gene families, improvements to the reference genome, resequencing natural accessions, sequencing related species and T-DNA lines In addition, attendees are encouraged to discuss resources they are developing, challenges they have encountered and upcoming needs

5:00pm - 8:00pm International Goat Genome Consortium - SUNRISE Organizer: Gwenola Tosser-Klopp, INRA Co-Chair: Alessandra Stella, FPTP

5:00pm Gwenola Tosser-Klopp, INRA Introduction 5:10pm Steven G Schroeder, Animal Genomics and Improvement Laboratory, USDA-ARS "Progress on the Reassembly and Annotation of the Goat Genome" (W399) 5:30pm Ezequiel Luis Nicolazzi, Fondazione Parco Tecnologico Padano "ADAPTmap: A First Insight into Goat Adaptation" (W400) 5:50pm Marcel Amills, Center for Research in Agricultural Genomics "Analysing the Genetic Diversity of Domestic and Wild Goats in Spain" (W401) 6:10pm Khanyisile Mdladla, Agricultural Research Council "Population Structure and Breed Relations of South African Indigenous Goat Ecotypes Using Genome-Wide SNP Data" (W402) 6:30pm Céline Carillier, INRA UMR 1388 GenPhySE Toulouse "Toward Genomic Selection in French Dairy Goats" (W403)

Monday - January 12, 2015

6:50pm Sylvain Foissac, INRA - GenPhySE "FR-AgENCODE: A Pilot Project to Improve the Functional Annotation of Livestock Genomes" (W404) 7:10pm Gwenola Tosser-Klopp, INRA Conclusion / Discussion

6:10pm - 8:20pm “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets - CALIFORNIA Organizer: Jason Williams, Cold Spring Harbor Laboratory

6:10pm Matthew Vaughn, Texas Advanced Computing Center, University of Texas "Overview of the iPlant Collaborative" (W425) 6:20pm Fiona McCarthy, University of Arizona "Functional Analysis of Your RNAseq Data" (W426) 6:35pm Sabarinath Subramaniam, University of Arizona "Flash Demo: Annotating genomes with MAKER-P and the iPlant Discovery Environment" (W427) 6:40pm Upendra Kumar Devisetty, University of California "A Hybrid Approach to Assemble and Annotate the Brassica rapa Transcriptome in the Cloud through the iPlant Collaborative and XSEDE" (W428) 7:00pm Kapeel Chougule, Cold Spring Harbor Laboratory "Flash Demo: Atmosphere Cloud Computing - Applied to Visualizing RNA-Seq Data" (W429) 7:05pm Donovan Bailey, New Mexico State University "Using iPlant Tools and Plastome Sequencing As a Springboard into Comparative Genomics: Plastome Organization and Sequence for the Mimosoid Legume Leucaena trichandra" (W430) 7:25pm Jeremy DeBarry, University of Arizona "Flash Demo: Secure, Collaborative, Management of Your Life Sciences Data with the Data Store" (W431) 7:30pm Andrew D Nelson, School of Plant Sciences, University of Arizona "Utilizing iPlant to Unearth Long Non-Coding RNAs and Characterize Their Evolution in the Plant Family Brassicaceae" (W432) 7:50pm Eva Huala, Phoenix Bioinformatics "Flash Talk: An Ontology Approach to Comparative Phenomics in Plants" (W433) 7:55pm Daniel B Taylor, Internet2 "Life Sciences Cyberinfrastructure at Your Fingertips: Using Internet2 to Power Scientific Collaboration" (W434)

76 Monday - January 12, 2015

6:10pm - 8:20pm BGI: Omics-based Solutions for Agricultural Research & Development - SAN DIEGO Organizer: Linda Lam, BGI Americas 6:10pm Xin Liu, BGI-Shenzhen "Recent progress of plant and animal researches at BGI" 6:30pm Henry T Nguyen, University of Missouri & National Center for Soybean Biotechnology "Soybean Genome Diversity and Trait Discovery" 6:50pm Torben Asp, Molecular Biology and Genetics, Aarhus University "Population-Based Genotyping for Implementation of Genomic Selection in Outbreeding Crops: A Case Study in Perennial Ryegrass" 7:10pm L Augusto Becerra Lopez-Lavalle, International Center for Tropical Agriculture – CIAT "Revisiting cassava genetic diversity reveals eco-geographic signature of the crop’s domestication" 7:30pm Luhan Yang, Harvard Medical School "Application of Genome Engineering and CRISPR/Cas9 Technologies in Plant and Animal Breeding" 7:50pm Ying Sun, China National Genebank "1,000 Fish Transcriptome (Fish-T1K) Project -- Progress and Challenges"

6:10pm - 8:20pm DNAstar: Genomic and Transcriptomic Analysis with Lasergene: Case Studies and a Workflow - ROYAL PALM SALON 4,5,6 Organizer: Jackie Carville, DNAStar, Inc 6:10pm Brenda Oppert, USDA ARS Center for Grain & Animal Health Research "Expression of Genes Encoding Cuticular Proteins is Reduced by Beauveria bassiana Infection of Tribolium castaneum Larvae" 6:30pm Petr Tvrdik, HHMI/University of Utah "RNA-Seq Analysis for Mouse Geneticists" 6:50pm Matthew Keyser, DNASTAR, Inc "DNASTAR’s Lasergene Genomics Suite for RNA-Seq Alignment and Analysis "

77 Monday - January 12, 2015

6:10pm - 8:20pm Maverix Biomics: Tails from the 99 Lives Companion Animal Genome Project - ROYAL PALM SALON 1,2,3 Organizer: Kelly Markiewicz, Maverix Biomics

Resources to accelerate genomic research for companion animals are relatively limited compared to traditional model vertebrates. Maverix Biomics provides complete genomic and expression analysis services for animal researchers, including sequencing library preparation and ready-to-use computational analytic kits. In this workshop, we feature presentations on new variant analyses from the 99 Lives Cat Sequencing Project, as well as a gene expression study to characterize inflammation in dogs, each utilizing the Maverix Analytic Platform.

6:10pm Leslie A. Lyons, University of Missouri-Columbia “99 Lives Cat Sequencing - nearly half way there!” 6:40pm Jeff Brockman, Hills Pet Nutrition “Analysis of a Canine Model of Inflammation by RNAseq” 7:10pm Holly C. Beale, Maverix Biomics “The Knowable Cat: Genomic Regions with High-Confidence Genotypes” 7:40pm Todd M. Lowe, Maverix Biomics “NGS Data Analysis with Maverix Analytic Platform”

6:10pm - 8:20pm Ubiquitome - Field applications of qPCR - PACIFIC SALON 3 Organizer: Claire Ellana, Ubiquitome The Ubiquitome Freedom4 is leading the way in mobile qPCR, with a vast range of field applications possible. In conjunction with the launch of the product, Ubiquitome invited researches to apply for the Freedom For You Grants Program, designed to provide support for remote qPCR projects. Ten finalists were chosen to receive support in the form of Freedom4 qPCR reagents and consumables, project design consultation, and technical support including wet lab processing. From the ten finalists, three grant winners will each receive a free Freedom 4 qPCR system worth $25,000. Grant winners will be selected on the basis of scientific merit, originality and how meaningful to their work it will be to have the remote/field qPCR capabilities offered by the Freedom 4. In addition to discussing the Freedom4 and field applications for mobile qPCR, this workshop will announce the ten finalists of the competition and highlight some of the submissions.

6:10pm Jo-Ann Stanton, University of Otago “Field applications of qPCR”

6:10pm - 8:20pm Envirologix Inc - PACIFIC SALON 1 Organizer: Charity Hirst, EnviroLogix Inc

6:10pm Dan Schaffer, Envirologix Inc “Point-of-Need, 10 Minute, Quantitative DNA/RNA Amplification and Detection in the Palm of Your Hand – Plants, Animals, and Beyond” 7:00pm Breck Parker, Envirologix Inc “Point-of-Need, 10 Minute, Quantitative DNA/RNA Amplification and Detection in the Palm of Your Hand – Plants, Animals, and Beyond”

7:00pm - 7:30pm Coffee Break - ATLAS FOYER

8:00pm - 10:00pm Fluidigm Hospitality Event - TIKI PAVILION TERRACE 78 Tuesday - January 13, 2015

7:00am - 8:00am Continental Breakfast - GOLDEN BALLROOM

7:00am - 3:00pm Registration - ATLAS FOYER

8:00am - 9:30am Plenary Talks - TOWN AND COUNTRY Chair: Max F Rothschild, Iowa State University 8:00am Xuemei Chen, University of California "Small Regulatory RNAs" 8:45am Mike E Goddard, University of Melbourne ""The Evolution and Genetic Architecture of Complex Traits"

9:30am - 10:30am Coffee Break - GRAND EXHIBIT HALL

9:30am - 3:00pm Exhibits & Posters Open - GRAND EXHIBIT HALL

10:30am - 12:40pm Banana Genomics - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Mathieu Rouard, Bioversity International and Angélique D'hont, CIRAD, UMR AGAP

10:30am Xiyin Wang, Plant Genome Mapping Laboratory, University of Georgia "Banana Genome Contributes to Understand Grass Chromosome Number Reduction and Genome Repatterning Mechanism" (W050) 10:50am Sebastien C Carpentier, KULeuven "Towards a Better Genome Annotation of Different Musa Cultivars Using mRNA Seq and Proteomics Data: The Search for Allelic Variants Related to Drought" (W051) 11:10am Pat Heslop-Harrison, University of Leicester "Transposable Elements and Their Evolution in Musa" (W052) 11:30am Allen Van Deynze, Seed Biotechnology Center, University of California "The African Orphan Crops Consortium, an Uncommon Collaboration to Develop Plantain and Banana" (W053) 11:50am Leena Tripahti, International Institute of Tropical Agriculture "Field Trial of Xanthomonas Wilt Disease-Resistant GM Bananas in East Africa" (W054) 12:10pm Angélique D'hont, CIRAD, UMR AGAP "Updates on the Musa acuminata Reference Genome Sequence" (W055)

79 Tuesday - January 13, 2015

10:30am - 12:40pm Bioinformatics - GOLDEN WEST Organizers: Tatiana Tatusova, National Center for Biotechnology Information (NCBI/NLM/NIH) and Aleksey Zimin, Institute for Physical Science and Technology, University of Maryland

10:30am Michael Schatz, Cold Spring Harbor Laboratory "Perfect Long Read Assembly and the Rise of Pan-Genomics" (W069) 10:50am Sergey Koren, National Biodefense Analysis and Countermeasures Center "Efficient Assembly of Large Genomes Using Single-Molecule Sequencing and Locality Sensitive Hashing" (W070) 11:10am Iain MacCallum, Broad Institute "Rapid De Novo Assembly and Visualization of Plant and Animal Genomes Using Single-Library, PCR-Free, 250-Base Illumina Reads" (W071) 11:30am Mark Borodovsky, Georgia Institute of Technology "What Gene Prediction in Transcriptomes, Metatranscrptomes, Metagenomes, and Microbial Genomes has in Common" (W072) 11:50am Ana Conesa, Centro de Investigación Príncipe Felipe "The Stategra Initiative Develops Novel Methodologies for the Integrative Analysis of Multiple Types of NGS & Omics Data" (W073) 12:10pm Alyona Kryschenko, University of Southern California "Nonparametric Methods for Prediction and Analysis of Promoters in Model Organisms" (W074)

10:30am - 12:40pm Brachypodium Genomics - PACIFIC SALON 2 Organizer: David Garvin, USDA-ARS, PSRU

10:30am Deborah Petrik, Illinois State University and DOE Great Lakes Bioenergy Research Center "PMT, a Grass-Specific Acyltransferase Involved in Lignin Biosynthesis" (W075) 10:50am Devin O'Connor, Sainsbury Laboratory, Cambridge University "Arabidopsis Lost Its Sister: Why Brachypodium Is a Better Model to Study PIN- Mediated Auxin Transport in the Shoot" (W076) 11:10am Malia Gehan, Donald Danforth Plant Science Center "High-Throughput Phenotyping of Brachypodium distachyon under Progressive Drought and Heat Stress" (W077) 11:30am Scott J Lee, Biology Department, University of Massachusetts "Examining Flowering Time in the Grasses: Population Structure and Genome-Wide Association Mapping in Brachypodium distachyon" (W078) 11:50am Ulrich Mueller, University of Texas at Austin "Efficient Evolution of Growth-Promoting Bacterial Rhizosphere Communities through Plant-Microbiome Co-Propagation" (W079) 12:10pm Melania Figueroa, University of Minnesota "The Brachypodium-Puccinia graminis System: Solving a Puzzle to Uncover the Underlying Mechanisms of Non-Host Resistance and Plant Immunity" (W080)

80 Tuesday - January 13, 2015

10:30am - 12:40pm Genomics-Assisted Breeding - TOWN AND COUNTRY Organizer: Rajeev K Varshney, ICRISAT

10:30am Rajeev K Varshney, ICRISAT "Welcome & Introduction" (W341) 10:35am Etienne Paux, INRA GDEC "High Throughput SNP Discovery and Genotyping in Hexaploid Wheat" (W342) 10:55am Richard Michelmore, Genome Center, University of California "The Influenza Paradigm for Resistance Gene Deployment in Lettuce" (W343) 11:15am Andreas Graner, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) "Genetic Dissection of Biomass Development in Barley" (W344) 11:35am Patrick S Schnable, Department of Agronomy, Iowa State University "Identification and Cross-Validation of Trait-Associated SNPs Provide Insights into Heterosis" (W345) 11:55am Herman De Beukelaer, Ghent University "Heuristic Exploitation of Genetic Structure in Marker-Assisted Gene Pyramiding Problems" (W346) 12:15pm Jianming Yu, Department of Agronomy, Iowa State University "Novel Strategies in Integrating Genomic Selection into the Broad Genomics-Assisted Breeding Framework" (W347) 12:35pm Rajeev K Varshney, ICRISAT Summary & Wrap-up

10:30am - 12:40pm Int'l Phytomedomics and Nutriomics Consortium (ICPN) - ROYAL PALM SALON 4,5,6 Organizer: Phullara Kole, C Kole Foundation for Science and Society Co-Chair: Chittaranjan Kole, Bidhan Chandra Agricultural University

10:30am Yong Pyo Lim, Chungnam National University "Genetics Meets Nutriomics: Genomic-Assisted Marker Development for Nutritional Quantitative Traits" (W412) 10:45am Amit Dhingra, Department of Horticulture, Washington State University "Transcriptomics Approach to Understand Differences in Phytonutrient Composition in Plants Grown Under Different Production Systems" (W413) 11:00am Li Li, USDA-ARS/Cornell University "Genetic Variation for High Beta-Carotene Accumulation in Crops" (W414) 11:15am Nitin Mantri, RMIT University "Development and Use of Novel Subtracted Diversity Array for Fingerprinting Medicinal Plants" (W415) 11:30am David W Still, Cal Poly Pomona "Breeding Lettuce to Maximize Nutrional Content Across Diverse Environments" (W416)

81 Tuesday - January 13, 2015

10:30am - 12:40pm Proteomics - PACIFIC SALON 3 Organizers: Madan K Bhattacharyya, Iowa State University and Michael A Djordjevic, Australian National University

10:30am SP Dinesh-Kumar, The Genome Center, University of California Davis, "Protein Microarray Platform for Pathogen Effectors Studies and Beyond" (W613) 10:50am Paul A Haynes, Macquarie University "Proteomic Analysis of Abiotic Stress in Grapevines" (W614) 11:10am Xiao-Ning Zhang, St Bonaventure University "Phosphor-Regulation Induced Pre-mRNA Splicing via a Splicing Activator, SR45, during Flower Development" (W616) 11:30am Ann E Blechl, USDA-ARS "Using Proteomics in Transgenic Wheat to Assess the Effects of an RNA Interference Construct that Targets a Family of Seed Storage Proteins" (W617) 11:50am Mingxun Wang, University of California - San Diego "GNPS - a Preview of the Future of Community Wide Collaboration and the Power of Social Networking in Mass Spectrometry" (W618) 12:10pm Sebastien C Carpentier, KULeuven "Drought Stress Research in Crops Using -Omics Approaches: mRNA Seq and Proteomics in the Spot Light" (W615)

10:30am - 12:40pm Rice Functional Genomics - SUNSET Organizers: Mingsheng Chen, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences , Guo-Liang Wang, The Ohio State University and Hironori Itoh, National Institute of Agrobiological Sciences

10:30am Rod A Wing, Arizona Genomics Institute, University of Arizona "Evolution of the Collective Oryza Genome: Development and Analysis of a Genus- Wide Genome Biology Platform to Help Solve the 9-Billion People Question " (W637) 10:50am Kenneth L McNally, The International Rice Research Institute "SNP-Seek: 3000 Rice Genomes for Allele Discovery" (W638) 11:10am Yonghong Wang, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences "The Roles of Strigoalctones in the Control of Rice Tillering" (W639) 11:30am Takashige Ishii, Kobe University "A Closed Panicle Regulated by OsLG1 was a Selected Trait during Rice Domestication" (W640) 11:50am Yinong Yang, Pennsylvania State University "Direct Regulation of a Mitogen-Activated Protein Kinase By a Plasma Membrane- Associated Calcium-Dependent Protein Kinase in Rice" (W641) 12:10pm Song Ge, Institute of Botany, CAS "Insights into the Role of Differential Gene Expression on Species Origin: A Case Study on Wild Rice" (W642)

82 Tuesday - January 13, 2015

10:30am - 12:40pm SGN Workshop: Solanaceae Genomes and Breeder Tools - TOWNE Organizers: Isaak Y Tecle, Boyce Thompson Institute for Plant Research and Lukas Mueller, Boyce Thompson Institute for Plant Research

10:30am Lukas Mueller, Boyce Thompson Institute for Plant Research Introduction 10:35am Lukas Mueller, Boyce Thompson Institute for Plant Research "Breeder Tools" (W662) 10:55am Isaak Y Tecle, Boyce Thompson Institute for Plant Research "solGS: A Web-Based Tool for Genomic Selection" (W663) 11:15am Susan R Strickler, Boyce Thompson Institute for Plant Research "Accessing SGN Genomes through Tools" (W664) 11:35am Surya Saha, Boyce Thompson Institute, Cornell University "Tomato Genome Assembly: SL250 and Beyond" (W665)

10:30am - 12:40pm Soybean Genomics - ROYAL PALM SALON 1,2,3 Organizer: Suk-Ha Lee, Seoul National University

10:30am Matthew E Hudson, University of Illinois "Highly Variable Regions in the Soybean Genome" (W689) 10:55am Yong-Qiang (Charles) An, USDA-ARS, Plant Genetics Research at Donald Danforth Plant Science Center "Exploring and Exploiting Soybean Seed Transcriptome Diversity" (W690) 11:20am Zhixi Tian, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences "Comprehensive Genomic Survey of Genes Related to Domestication and Improvement in Soybeans" (W691) 11:45am Soon-Chun Jeong, Korea Research Institute of Bioscience and Biotechnology "Genetic Analysis of Genomic Locations Underlying Domestication Transitions in Soybean" (W692) 12:10pm Jieqing Ping, Purdue University "Evolutionary Novelty of Duplicates: Insights from a Case Study of Soybean Stem Growth Habit" (W693) 12:35pm Osman Radwan, University of Illinois at Urbana-Champaign "Molecular Characterization of Transgenic Soybean Overexpressing the GM-RLK3" (W694)

83 Tuesday - January 13, 2015

10:30am - 12:40pm Synthetic Biology - PACIFIC SALON 1 Organizer: Elibio Rech, EMBRAPA

10:30am Fredy Altpeter, University of Florida - IFAS "Precision Genome and Metabolic Engineering for Genetic Improvement of the Biofuel Feedstock Sugarcane" (W771) 10:46am Julie Robinson, Synthetic Genomics "Take Control of Your Gene Construction Projects with the BioXP™ 3200 System" ( W772) 11:02am Alison K Huttly, Rothamsted Research "Comprehensive Suite of Vectors Suitable for Wheat Transformation" (W773) 11:18am Samuel M D Seaver, Argonne National Laboratory "The Plantseed Resource for Functional Annotation and Cross-Kingdom Comparative Genomics of Plant Genomes" (W774) 11:34am Mariana de Souza e Silva, ESALQ/USP "Metabolic Fingerprinting of Contaminant Microorganisms Present in the Fermentative Process of Ethanol" (W775) 11:50am Sushma Naithani, Department of Botany & Plant Pathology, Oregon State University "VitisCyc: A Metabolic Pathway Knowledgebase for Grape (Vitis vinifera)" (W776) 12:06pm Yue-ie C Hsing, Institute Plant and Microbial Biology, Academia Sinica, "Comparison of Sequence Changes in Rice Regenerants and Transformants" (W777)

10:30am - 12:40pm Systems Genomics - SUNRISE Organizers: Hong-Bin Zhang, Texas A&M University and Meiping Zhang, Texas A&M University

10:30am Md Shakhawat Hossain, University of Missouri "Soybean Root Hair, a Single Cell Model to Study Plant-Microbe Interactions, Abiotic Stress and Epigenetic Regulation" (W784) 10:50am Huaijun Zhou, University of California "Systems Biology Analysis of Mechanism of Host Response to Avian Influenza Virus Infection in Two Genetically Distinct Chicken Inbred Lines" (W785) 11:10am Yun-Hua Liu, Texas A&M University "The Molecular Mechanisms of Crop Quality: Cloning and Systems Analysis of 474 Genes Controlling Fiber Length in Cotton, Gossypium hirsutum L and G barbadense L" (W786) 11:30am Nicolas Langlade, INRA LIPM "Bridging Physiological and Evolutionary Time Scales in a Gene Regulatory Network" (W787) 11:50am Steven Briggs, University of California, San Diego "Complementary Regulatory Networks Enabled By Parallel Transcriptome and Proteome Dynamics" (W788) 12:10pm C Neal Stewart Jr, Department of Plant Sciences, University of Tennessee "Draft Genome of Horseweed Illuminates Expansion of Gene Families That Might Endow Herbicide Resistance" (W789)

84 Tuesday - January 13, 2015

10:30am - 12:40pm Computer Demo 3 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University and Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH)

10:30am Delphine Steinbach, INRA - URGI "GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data" (C15) 10:45am Xinbin Dai, The Samuel Roberts Noble Foundation "HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks" (C16) 11:00am Thomas Letellier, INRA - URGI "Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B" (C17) 11:15am Hans Vasquez-Gross, Department of Plant Sciences, University of California, Davis "Using the Wheat Tilling Database to Search Mutants of Interest" (C18) 11:30am Emily Grau, UC Davis "TreeGenes and CartograTree: Tools for Forest Tree Genomics" (C19) 11:45am Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation "LegumeIP - an Integrative Platform to Study Gene Function and Genome Evolution in Legumes: Year 3 Update" (C20) 12:00pm Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH) "National Center for Biotechnology Information Resources for Plant Genomics" (C21) 12:15pm Nirav Merchant, iPlant Collaborative/University of Arizona "Manage Complex Computations Using Clouds and Containers in iPlant Atmosphere" (C22) 12:30pm Jason R Miller, J Craig Venter Institute "Using the Arabidopsis Information Portal" (C23)

10:30am - 12:40pm Cultivating Broader Impact Programs: Developing and Executing a Successful Program for Current and Future Grants - ESQUIRE Organizer: Michael D Gonzales, SoyMapII/University of Georgia Chair: Diane Jofuku Okamuro, National Science Foundation

10:30am Introductory Remarks 10:35am Success Stories/Lessons Learned 10:36am Ketia Shumaker, The University of West Alabama "Bridging the Gap with Undergraduate Internships: Pennsylvania State University's Hardwood Genomics Outreach Component with the University of West Alabama" (W210) 10:51am Michael D Gonzales, University of Georgia "SOYMAP II: Nurturing Successful Relationships that Highlight Plant Research, Cultural Diversity and Collaboration" (W211) 11:06am Tools for Cultivating a Successful Program 11:36am Measuring the Impact 12:06pm Diane Jofuku Okamuro, National Science Foundation "Perspectives on Broader Impacts"

85 Tuesday - January 13, 2015

10:30am - 12:40pm NRGene - The Fast Track from Genome to Traits Discovery - PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Moran Ressler, NRGene Chair: Gil Ronen, NRGene

Elucidating intra-species variability by denovo assembly of complex genomes The advance of Next- Generation-Sequencing (NGS) technologies have enabled the sequencing of large populations of plants, some of which have very complex and sometimes polyploid genomes However, the lack of adequate analysis tools for that data is still a major barrier for the research of those crops After years of research, NRGene has developed GenoMAGIC, a novel computational platform that analyzes large and diverse populations of the most complex plant genomes, helping researchers and breeders to correlate genetic sequence with information about plant performance The workshop will feature several presentations in which leading researchers of maize, wheat, and vegetables will describe the results of whole genome analysis projects, and how they used GenoMAGIC to elucidate the complexity of their population of interest Each talk will demonstrate a specific use of the GenoMAGIC platform together with phenotypic information, to reach exciting new genetic understating on the desired traits, and practical use in advanced breeding

10:30am Fei Lu, Institute for Genomic Diversity, Cornell University "Assembling Maize Inbred CML247: The Maize Pan-Genome Takes Off" 10:55am Assaf Distelfeld, Tel-Aviv University "Towards Functional Durum Wheat Genome Assembly" 11:20am Nurit Katzir, Agricultural Research Organization (ARO) "Ultra-High Resolution QTL Mapping of Fruit Quality Traits in Melon" 11:45am Alvaro G Hernandez, Roy J Carver Biotechnology Center and University of Illinois at Urbana-Champaign "New Approaches for sequencing complex plant genomes for de novo assembly" 12:10pm Guy Kol, NRGENE LTD and NRGENE Ltd "Unraveling the maize genome diversity by comparing several de-novo assembled maize genomes"

12:30pm - 1:30pm Lunch (Vouchers Provided) - LION FOUNTAIN COURTYARD

1:30pm - 3:40pm Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Nora Lapitan, US Agency for International Development and Lindsay Parish, US Agency for International Development 1:30pm Timothy J Close, University of California "Cowpea: Putting Genomics into Practice for Food Security" (W705) 1:55pm Raman Babu, Centro International de Mejoramiento de Maiz y Trigo (CIMMYT) "Genomics-Assisted Breeding for Climate Resilience in Tropical Maize" (W706) 2:20pm Eduardo Blumwald, University of California-Davis "Engineering Drought Tolerance in Grain Crops" (W707) 2:45pm Huaijun Zhou, University of California "Improving Food Security in Africa By Enhancing Resistance to Newcastle Disease and Heat Stress in Chickens: Genomics to Improve Poultry" (W708) 3:10pm Kevin R Hayes, Pioneer Hi-Bred International "Genomics Data Management: A Global Perspective" (W709) 86 Tuesday - January 13, 2015

1:30pm - 3:40pm Animal Epigenetics - ROYAL PALM SALON 4,5,6 Organizers: Hasan Khatib, University of Wisconsin Madison and Erdogan Memili, Mississippi State University

1:30pm Christine Couldrey, AgResearch Ltd Ruakura "Integrating DNA Methylation with other 'Omics Data Sets for Prediction of Meat Tenderness in Sheep" (W020) 1:50pm Jenna Kropp, University of Wisconsin "Non-Invasive Biomarkers of Embryo Development in Cattle" (W021) 2:10pm Erdogan Memili, Mississippi State University "Paternal Epigenetic Mechanisms Regulate Male Fertility and Early Development in Mammals" (W022) 2:30pm Mike E Goddard, Biosciences Research Division, DPI "Genetic Architecture and Evolution of Complex Traits" (W023) 2:50pm Jiuzhou Song, University of Maryland "Dynamic Chromatin Modifications and Tissue-Specific Marks of Mdv Infection in Inbred Chicken Lines" (W024)

1:30pm - 3:40pm Compositae - PACIFIC SALON 4-5 (2ND FLOOR) Organizers: John M Burke, Department of Plant Biology, University of Georgia and Richard Michelmore, Genome Center, University of California

1:30pm S Evan Staton, University of British Columbia "Transposable Elements Drive Lineage-Specific Patterns of Genome Expansion and Turnover in the Asteraceae" (W173) 1:50pm Dean Lavelle, Genome Center, University of California "Associating Phenotype to Genotype in Lettuce Using NGS, in silico Analyses, High Resolution Genetic Maps and Targeted Fine Mapping" (W174) 2:10pm Sebastien Renaut, Université de Montréal "The Accumulation of Deleterious Mutations As a Consequence of Domestication and Improvement in Sunflowers" (W175) 2:30pm Marieke Jeuken, Plant Breeding, Wageningen University & Research "Survey of Reproductive Barriers in an Interspecific Lettuce Hybrid" (W176) 2:50pm Daniel Ilut, Cornell University "Developing Guayule (Parthenium argentatum A Gray) as a Commercial Source of Natural Rubber: Germplasm Characterization, Genotyping, and Genome Sequencing" (W177) 3:10pm Simon Hiscock, University of Bristol "Changes to Genome, Epigenome and Transcriptome during Hybrid Speciation: Insights from the Senecio Genome Project" (W178)

87 Tuesday - January 13, 2015

1:30pm - 3:40pm Gramene Project - CALIFORNIA Organizers: Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS and Marcela Karey Monaco, Cold Spring Harbor Laboratory

1:30pm Joshua Stein, Cold Spring Harbor Laboratory "Browsing and Comparing Genomes Using the Gramene/Ensembl Plants Browser" (W373) 1:50pm Paul J Kersey, EMBL - The European Bioinformatics Institute "Programmatic Interfaces to Plant Genomic Data" (W374) 2:10pm Justin Preece, Dept of Botany & Plant Pathology, Oregon State University "Plant Reactome: A Resource for Plant Metabolic and Regulatory Pathways" (W375) 2:30pm Robert Petryszak, EMBL - The European Bioinformatics Institute "Expression Atlas - a New Resource for Baseline and Differential Gene Expression for Crop Plants" (W376) 2:50pm Sushma Naithani, Department of Botany & Plant Pathology, Oregon State University "Hands-on Session: Upload, Display and Analyze Your Data on the Gramene/Ensembl Genome Browser" (W377)

1:30pm - 3:40pm Weedy and Invasive Plant Genomics - ESQUIRE Organizers: C Neal Stewart Jr, Department of Plant Sciences, University of Tennessee and Patrick Tranel, University of Illinois

1:30pm Kathryn A Hodgins, Monash University "The Genetics of Adaptation in an Invasive Plant (Ambrosia artemisiifolia)" (W824) 1:50pm Stephen I Wright, University of Toronto "Polyploid Origins and the Genomics of Adaptation in the Worldwide Weed Capsella bursa-pastoris" (W825) 2:10pm Gyoungju Nah, Seoul National University "Uncovering Differential Molecular Basis of Adaptive Diversity in Echinochloa Transcriptomes" (W826) 2:30pm Wenqian Kong, University of Georgia "Genetics of Weediness in Sorghum halepense" (W827) 2:50pm Amy Lawton-Rauh, Clemson University "Divergence Population Genetics of De-Domestication in California Weedy Rice (Oryza sp)" (W828) 3:10pm Niranjan Baisakh, Louisiana State University Agricultural Center "Looking at the Bright Side of an Invasive Species: Spartina alterniflora from an Abiotic Stress Tolerance Perspective" (W829)

88 Tuesday - January 13, 2015

1:30pm - 3:40pm Qiagen - Agrigenomics Software Tools From Qiagen Bioinformatics - ROYAL PALM SALON 1,2,3 Organizer: Anja Lykkebak, CLC Bio Join us for cake and scientific discoveries, where researchers will present their latest discoveries using CLC Genomics Workbench, Server, and Microbial Genome Finishing Module 1:30pm Marta Matvienko, CLC bio "Update on Tools and Workflows in CLC Genomics Workbench and Server" 2:00pm Alexander Kozik, Genome Center, University of California "High Resolution Detection of Recombination Events in RILs by Genomic Shotgun Sequencing at Low Coverage" 2:30pm Gustavo Rodriguez-Alonso, Instituto de Biotecnología, UNAM "Root Transcriptome of the Pachycereus pringlei, a Sonoran Desert Cactus with Determinate Growth of the Primary Root - Pachycereus pringlei"

This work was supported by UNAM-DGAPA-PAPIIT (IN204912)

1:30pm - 3:40pm Lucigen - Closing and Finishing Genomes and BACs with Long Span NGS Reads - PACIFIC SALON 1 Organizer: Curtis Knox, Lucigen Corporation Lucigen’s long span NGS read technology is capable of generating mate pair sequencing reads that span 50 Kb in length, enabling de novo genome assemble, closure and finishing on the Illumina or Ion Torrent platforms User defined 2-8 Kb mate pair (MP) or 10-25 Kb MP libraries can be produced with bead based or gel purification protocols, and a novel fosmid based approach generates 35-50 Kb MP libraries This workshop introduces a new tool for long span NGS reads, with presentations demonstrating the efficient assembly, closing and finishing of genomes and BACs 1:30pm Curtis Knox, Lucigen Corporation "Introduction to Lucigen's Long Span NGS Read Technology" 1:45pm Robert R Klein, USDA-ARS, Southern Plains Agricultural Research Center "Closing and Finishing the Mitochondrial and Chloroplast Genomes of Sorghum Male-sterile A1 Cytoplasm using Long Span NGS Read Technology" 2:10pm Kankshita Swaminathan, Energy Biosciences Institute "Construction and analysis of a Miscanthus sinensis gene space assembly" 2:35pm Miroslav Valarik, Institute of Experimental Botany "Mate Pair Libraries for Enhancing Wheat BAC Assemblies" 3:00pm David Mead, Lucigen Corporation "100 Kb Long Span Reads and Beyond"

1:30pm - 3:40pm BioNano Genomics - SUNRISE Organizer: Kim Maibaum, BioNano Genomics 1:30pm Gabino F Sanchez Perez, Plant Research International, Wageningen University "Bridging the Gap between Micro and Macro: Genetic and Structural Variation in the Tomato Clade" 1:50pm Bin LIU, Ceter of Systematic Genomics, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences "Towards a High-standard Reference Genome of Horses With Whole Genome Physical Mapping and Integration of Genome Sequences" 2:10pm Ryo Koyanagi, Okinawa Institute of Science and Technology "Exploring Metazoan Evolution with Genome Maps" 89 Tuesday - January 13, 2015

1:30pm - 3:40pm Fluidigm - SUNSET Organizer: Tammy Kim, Fluidigm Corporation Title: Painlessly moving from STRs to SNPs and genotyping by sequencing (GBS) to speed up wildlife monitoring and crop development Switching away from microsatellites can be difficult and painful, but it doesn’t have to hurt. Automated tools to genotype hundreds of samples across all of your SNPs generate results faster and more easily. Learn how to move off of STRs with ease for crop management, breeding and wildlife monitoring.

1:30pm Sheina Sim, Researcher, USDA-ARS, Hilo, Hawaii “A low-cost and high-throughput approach for phylogenomics: Resolving evolutionary relationships between recently diverged species”

2:10pm Robert Kraus, University of Konstanz “A wolf SNP marker panel optimized for non-invasive samples based on the Fluidigm SNP genotyping IFC.”

2:50pm Marie Lee, Applications Scientist, Fluidigm “Quick and easy genotyping of difficult and limited samples in agbio applications.”

1:30pm - 3:40pm Kapa Biosystems' From Pathogens to Produce: Genomic advances using WGS, RNA- Seq, and PCR - TOWNE Organizer: Michelle Coombs, Kapa Biosystems Kapa Biosystems is proud to sponsor a corporate workshop with an array of industry thought leaders discussing their research using the latest Kapa products This workshop will cover: food-borne pathogen detection using microbial WGS; marker-assisted selection in apple using high-throughput PCR; and transcriptome analysis of microalgae to determine maximum lipid production for biofuels using RNA-Seq Kapa Biosystems is a life science reagents supplier that utilizes proprietary, directed- evolution technologies to optimize enzymes for PCR, real-time PCR, and next-generation sequencing applications Kapa’s portfolio of best-in-class products confers significant performance advantages when compared to traditional wild-type enzymes To learn more and receive a free t-shirt, stop by booth 324 in the Grand Exhibit hall

1:30pm Riccardo Velasco, Fondazione E Mach "A Cost-Effective Strategy for Marker-Assisted Selection (MAS) in Apple (M pumila Mill): The Experience from the Edmund Mach Foundation Program for Resistance and Quality Traits" 1:50pm Chia-Lin Wei, DOE Joint Genome Institute "System-Wide Transcriptome Analysis Delineate Lipid Regulatory Pathways in Microalgae" 2:10pm Bart C Weimer, University of California, Davis "Large-Scale Microbial Genomics and Host/Microbe Interactions"

90 Tuesday - January 13, 2015

1:30pm - 3:40pm LGC symposium 2 - Genomic solutions to meet agriculture’s future challenges today - PACIFIC SALON 2 Organizer: Bonnie Alvarado, LGC LGC is involved with varied projects around the world to improve crops needed to feed the developing world The International Maize and Wheat Improvement Center (CIMMYT) and the International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) are two such projects that have been hugely successful This is not only in providing a growing knowledge base for breeders and plant geneticists to improve cereal crops such as wheat and maize but also in applying this knowledge to meet agricultures continuing and future challenges Our speakers Dr Sarah Hearne (CIMMYT) and Dr Babu Raman (CIMMYT & ICRISAT) will talk about how their projects are influencing crop improvement globally They explain how adopting molecular breeding techniques to locate markers for specific traits has quickly boosted efforts to improve food staples as well as adapting them to harsh environments The final speaker Dr Dietrich Koester (LGC Genomics, Nucleic Acid Purification Product Manager) will talk about tailor-made DNA extraction methods for agriculture and livestock He has a wealth of extraction experience with optimising chemistries for difficult to extract plant materials as well as optimising different extraction technologies for livestock breeding applications He will explain how it is possible to optimise for challenging projects so that DNA is not the limiting factor

1:30pm Mark Sawkins, Generation Challenge Programme "Accessing genotyping services for crop improvement in developing countries The Generation Challenge Program (GCP) experience" 1:50pm Sarah Hearne, CIMMYT International Maize and Wheat Improvement Center "KASP Pipeline for Quality Data; Sampling to Data" 2:10pm Raman Babu, Centro International de Mejoramiento de Maiz y Trigo (CIMMYT) "KASP Pipeline for Quality Data; Sampling to Data" 2:30pm Dietrich Koester, LGC “LGC’s world of DNA extractions – tailor-made solutions for plant and livestock samples”"

1:30pm - 3:40pm Pacific Biosciences: Expanding Our Understanding of Complex Genomes with SMRT® Sequencing - SAN DIEGO Organizer: Wendy Weise, Pacific Biosciences Chair: Marty Badgett, Pacific Biosciences

1:30pm Marty Badgett, Pacific Biosciences "PacBio Latest Developments & Grant Program" 1:45pm Robert VanBuren, Danforth Plant Science Center "De novo assembly of a complex panicoid grass genome using ultra-long PacBio reads with P6/C4 chemistry" 2:10pm Susan R Strickler, Boyce Thompson Institute for Plant Research "Genome assembly strategies of the recent polyploid, coffea arabica" 2:35pm Timothy PL Smith, USDA-ARS, US Meat Animal Research Center "A genome assembly of the domestic goat from 70x coverage of single molecule, real- time sequence" 3:00pm Michiel van Eijk, KeyGene "Genome assembly and Iso-Seq transcriptome sequencing of tetraploid cotton"

91 Tuesday - January 13, 2015

1:30pm - 3:40pm IBM - Accelerating Genomics Research using an Integrated High Performance Computing Solution - GOLDEN WEST Organizer: Peter Basmajian, IBM Advancements in genomics research pose challenges for IT leaders, researchers and developers to analyze, manage, share and store large scale data with greater efficiency at lower cost High- performance best practices in computing and storage solutions are required to process the data produced efficiently The genomics pipeline workflow must be optimized using workload management software in order to fully utilize the available resources Data that is used less often must be archived so that it is stored cost effectively, but still be easily available We will discuss compute and data challenges, the latest IBM architecture for a high performing genomics research platform and real-world strategies adopted by leading genomic research institutes for large scale data projects 12:00am Kathy Tzeng, IBM "Accelerating Genomics Research Using an Integrated High Performance Computing Solution"

1:30pm - 6:10pm IWGSC - Standards and Protocols - PACIFIC SALON 3 Organizers: Jane Rogers, International Wheat Genome Sequencing Consortium and Catherine Feuillet, Bayer CropScience

1:30pm Hana Simkova, Institute of Experimental Botany "Improving the Physical Map and Sequence of the 7DS with a BioNano Map" (W417) 1:50pm Gabriel Keeble-Gagnere, Murdoch University "Reference Assembly of Chromosome 7A as a Platform to Study Regions of Agronomic Importance" (W418) 2:10pm Valerie Barbe, CEA - Genoscope "Chromosome 1B: A Step Further in the Sequencing of the Hexaploid Wheat Genome" (W419) 2:30pm Ming-Cheng Luo, Department of Plant Sciences, University of California "BioNano Genome Map to Facilitate the Assembly of the Aegilops tauschii Genome" (W420) 2:50pm Abraham B Korol, Institute of Evolution, University of Haifa "Using LTC Software for Physical Mapping and Assisting in Sequence Assembly" (W421) 3:10pm Andrew G Sharpe, National Research Council Canada "Progress in Sequencing and Scaffolding Chromosome 1A" (W422) 3:30pm Vijay K Tiwari, Kansas State University "Application of RH Mapping in Wheat Genome Analysis" (W423) 3:50pm Michael Alaux, INRA - URGI "IWGSC Sequence Repository: How to Facilitate Pseudomolecule Assembly?" (W424)

2:00pm - 3:00pm Coffee Break - GRAND EXHIBIT HALL

92 Tuesday - January 13, 2015

4:00pm - 6:10pm Plant Science at the JGI and KBase - SAN DIEGO Organizers: Jeremy Schmutz, DOE Joint Genome Institute , Gerald A Tuskan, Oak Ridge National Laboratory , Doreen Ware, Cold Spring Harbor Laboratory/USDA- ARS and Dave Weston, Oak Ridge National Laboratory

4:00pm Jeremy Schmutz, DOE Joint Genome Institute "Joint Genome Institue Plant Science Program" (W718) 4:20pm Dave Weston, Oak Ridge National Laboratory "Plant Science in KBase" (W719) 4:35pm Thomas Juenger, University of Texas at Austin "Panicum hallii: Genomics Enabled Perennial Grass Model" (W720) 4:55pm Wellington Muchero, Oak Ridge National Laboratory "Highly Efficient Discovery of Novel Genes in the Complex Perennial Populus Using GWAS and Coexpression Analyses in KBase" (W721) 5:15pm Samuel M D Seaver, Argonne National Laboratory "KBase Metabolic Modeling with Sphagnum" (W722) 5:35pm John Vogel, DOE Joint Genome Institute "How to Work with the JGI and KBase" (W723)

4:00pm - 6:10pm Cassava Genomics - SUNRISE Organizer: Steve Rounsley, Dow Agrosciences 4:00pm Jessen V Bredeson, University of California, Berkeley "Genome Sequence and Genetic Diversity of Cassava and Its Wild Relatives" (W102) 4:20pm Wilhelm Gruissem, ETH Zürich "Development of Herbicide-Tolerant Cassava Using Random Mutagenesis" (W103) 4:40pm Ramu Punna, Institute for Genomic Diversity, Cornell University "Identifying Genetic Load By Whole Genome and Transcriptome Sequencing of Cassava Breeding Lines" (W104) 5:00pm Marnin Wolfe, Cornell University "Genome-Wide Association Analyses Reveal Key Aspects of Genetic Architecture Cassava in Africa" (W105) 5:20pm Nigel J Taylor, Donald Danforth Plant Science Center "TBD" (W106) 5:40pm Morag Ferguson, International Institute of Tropical Agriculture (IITA) "TBD" (W107)

93 Tuesday - January 13, 2015

4:00pm - 6:10pm Components of Apomixis - PACIFIC SALON 6-7 (2ND FLOOR) Organizers: Emidio Albertini, University of Perugia and Tim Sharbel, IPK Gatersleben

4:00pm Elvira Hoerandl, Georg-August-University of Goettingen "Stress Response of Reproductive Pathways in Facultative Apomictic Ranunculus Auricomus Hybrids" (W167) 4:20pm John G Carman, Utah State University "Hot on the Trail of the Sex-Apomixis Switch in Boechera (Brassicaceae)" (W168) 4:40pm Nico De Storme, Ghent University "Male Apomixis: An Alternative Strategy to Synthetically Engineer Clonal Seed Formation in Plants" (W169) 5:00pm Shai J Lawit, DuPont Pioneer "Harnessing Components of Apomixis for Agricultural Productivity" (W170) 5:20pm Gianni Barcaccia, University of Padua "Flower Transcriptomics for Uncovering Genes Related to Plant Reproduction in the Facultative Apomict Hypericum perforatum L" (W171) 5:40pm John T Lovell, University of Texas, Austin "Muller's Ratchet and Adaptation in Sympatric Sexual and Apomictic Boechera Lineages" (W172)

4:00pm - 6:10pm Galaxy for SNP and Variant Data Analysis - CALIFORNIA Organizer: Dave Clements, Johns Hopkins University

Galaxy is a data integration and analysis platform for life sciences research (http://galaxyprojectorg) This hands-on workshop briefly introduces the Galaxy platform and then walks participants through a multi-step, SNP and variant calling analysis exercise, starting with quality control We will take advantage of Galaxy's rich tool set and visualization capabilities to do this

The workshop will also provide a brief overview of the Galaxy Project, and several ways in which the Galaxy platform is available to researchers

Galaxy is an open-source, web-based platform, and there are over 60 publicly accessible servers around the world Galaxy can also be installed locally, or on the cloud

Galaxy enables bench scientists to create and experiment with sophisticated and reproducible data analysis If you are new to next generation sequencing data analysis, or if you are trying to find a better way to manage and perform your analyses, then this workshop will be of interest to you

4:00pm Dave Clements, Johns Hopkins University "Galaxy for SNP and Variant Data Analysis" (W317)

94 Tuesday - January 13, 2015

4:00pm - 6:10pm Gene Expression Analysis - ROYAL PALM SALON 1,2,3 Organizers: David W Galbraith, University of Arizona, BIO5 Institute and Gregory D May, DuPont Pioneer

4:00pm Rodrigo A Gutierrez, Pontificia Universidad Católica de Chile "TBA" (W318) 4:20pm Sharon B Gray, University of California, Davis "Understanding Gene Expression Responses to the Environment in Tomato Roots at the Cell Type and Tissue-Specific Level" (W319) 4:40pm Niina Haiminen, IBM T J Watson Research - Computational Biology Center "RoDEO: Non-Parametric Robust Differential Expression Operator" (W320) 5:00pm Mathew G Lewsey, Salk Institute for Biological Studies "Networks Regulating Hormone-Mediated Plant Growth" (W321) 5:20pm Jeremy Pillet, University of Florida "Identification of Novel Flavonoid-Pathway Regulatory Genes using Transcriptome Correlation Network Analysis in Ripe Strawberry (Fragaria x ananassa) Fruit" (W322) 5:40pm Tyson A Clark, Pacific Biosciences "Full-length, Single Molecule, Whole Transcriptome cDNA Sequencing of the European Cuttlefish" (W323)

4:00pm - 6:10pm Host-Microbe Interactions - SUNSET Organizers: Reno Pontarollo, Genome Prairie and Brett Tyler, Oregon State Univ. 4:00pm Li-Jun Ma, University of Massachusetts Amherst "Genomic Plasticity and the Adaptation of Pathogenic Fungi" (W395) 4:30pm Lida Derevnina, Genome Center, University of California "The Downy Mildews: So Many Genomes, so Little Time" (W396) 5:00pm Flavio Schwarz, University of California, San Diego "Human-Specific Changes in the Biology of Siglecs and their Relevance for Host– Microbe Interactions" (W397) 5:30pm Laura M Braden, University of Victoria "Salmon Skin – Ground Zero of the Molecular War"

4:00pm - 6:10pm Illimina: Agrigenomic Tools: Powered by Illumina — From Discovery to Decision - GOLDEN WEST Organizer: Lauren Brock, Illumina, Inc The Illumina Workshop will highlight Agrigenomic tools from Illumina that are being used to meet agricultural application needs from discovery to breeding and production decisions The recipient of the 2015 Agricultural Greater Good Initiative will be announced Attendees will learn what’s new from Illumina and have an opportunity to visit with Illumina experts across our portfolio 4:00pm Mike Thompson - Introductions and Announcements 4:20pm Andre Eggen - 1000 Bull Genomes Project 4:40pm Richard Finkers - A de novo assembly for the 16GB Allium cepa genome, tears of joy 5:00pm Tim Close - Development of a 60k iSelect to Facilitate Cowpea Breeding 5:20pm Giovana Prout - Illumina Concierge Service 5:40pm Kirk Malloy - What's new from Illumina 95 Tuesday - January 13, 2015

4:00pm - 6:10pm Perennial Grasses - PACIFIC SALON 2 Organizers: Malay C Saha, The Samuel Roberts Noble Foundation and Shing Kwok, USDA National Institute of Food and Agriculture

4:00pm Hong Luo, Clemson University "Genetic Engineering of Perennial Grasses: Trait Modification, Transgene Containment and Gene Discovery in Turf Species" (W502) 4:20pm Erik J Sacks, Energy Biosciences Institute, University of Illinois "Genomics and Breeding of Miscanthus" (W503) 4:40pm Hilde Muylle, ILVO-Plant Sciences Unit-Growth and Development "An Association Mapping Approach on Cell Wall Digestibility and Plant Architecture Gives Insight in Yield, Persistency and Forage Quality in Perennial Ryegrasses" (W504) 5:00pm Guillaume P Ramstein, University of Wisconsin-Madison "Genome-Wide Association Study Based on Multiple Imputation with Low-Depth Sequencing Data: Application to Biofuel Traits in Reed Canarygrass" (W505) 5:20pm Roger Thilmony, USDA-ARS "Expanding the Breeder's Toolbox: Use of the Model Perennial Grass Brachypodium sylvaticum to Study Abiotic Stress and to Develop Biotechnological Tools for Switchgrass Improvement" (W506) 5:40pm Paul Grabowski, USDA-ARS "Detecting Genetic Associations with Phenology in Switchgrass Using Exome- Capture" (W507)

4:00pm - 6:10pm Plant Dormancy Workshop - ROYAL PALM SALON 4,5,6 Organizers: Anne Fennell, South Dakota State University and Jason Londo, USDA- ARS Grape Genetics Research Unit 4:00pm Dormancy Workshop Introductory Remarks 4:05pm Michael Wisniewski, USDA-ARS "Deciphering the Integrated Regulation of Dormancy, Cold Hardiness, and Growth in Apple" (W532) 4:40pm Gregoire Le Provost, INRA, BIOGECO, UMR 1202 "A RNAseq Approach to Decipher the Molecular Mechanisms Involved in Dormancy Regulation in the Fagaceae Family" (W533) 5:00pm Victor Busov, Michigan Tech University "Discovery of Dormancy-Associated Genes in Populus through Activation Tagging" (W534) 5:20pm Xingyou Gu, South Dakota State University "Identities and Regulatory Mechanisms of Seed Dormancy Genes Map-Based Cloned from Rice" (W536) 5:40pm Eiji Nambara, Dept of Cell & Systems Biology, University of Toronto "A Comparative Transcriptome Analysis on Growth Regulation Between Seeds and Buds of Arabidopsis" (W535)

96 Tuesday - January 13, 2015

4:00pm - 6:10pm Root Genomics - PACIFIC SALON 4-5 (2ND FLOOR) Organizer: Antonio Costa De Oliveira, Federal University of Pelotas

4:00pm Erin Sparks, Duke University "Transcriptional Networks Reveal Different Mechanisms to Achieve Tissue-Specific Expression Patterns in the Arabidopsis Root" (W647) 4:20pm Riccardo Bovina, DipSA - University of Bologna "Describing and Mapping ROOT Mutants in Barley" (W644) 4:40pm Tri D Vuong, University of Missouri & National Center for Soybean Biotechnology "Genetic Architecture of Cyst Nematode Resistance Revealed By Genome-Wide Association Study in Soybean" (W645) 5:00pm Emanuel Souza, UFPR "Transcriptomic Analyses of Roots of Cereals Associated to the Nitrogen-Fixing Bacteria Azospirillum brasilense and Herbaspirillum seropedicae" (W648) 5:20pm Ji-Young Lee, School of Biological Sciences, Seoul National University "Cytokinin-Dependent Secondary Growth Determines Root Biomass in Radish (Raphanus sativus L)" (W643) 5:40pm Jonathan Atkinson, The University of Nottingham "Phenotyping Wheat Root Architecture in 2D and 3D" (W646)

4:00pm - 6:10pm Bioenergy - Towards Increasing Oil in Nonseed Biomass - TOWNE Organizer: Aruna Kilaru, East Tennessee State University

4:00pm Introductory Remarks 4:04pm Xiaobo Li, Carnegie Institution for Science "Construction of an Indexed Mutant Library to Enable Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii" (W062) 4:22pm Aruna Kilaru, East Tennessee State University "Comparative Transcriptomics Identifies Key Steps in Storage Oil Biosynthesis in Plant Tissues" (W063) 4:40pm Yang Yang, Michigan State University, GLBRC "Ectopic Expression of WRI1 Affects Fatty Acid Homeostasis in Brachypodium distachyon Vegetative Tissues" (W064) 4:58pm Thomas E Clemente, University of Nebraska "Towards the Development of Sustainable Feedstocks for Renewable Biobased Products: The Case for Sugarcane and Sweet Sorghum" (W065) 5:16pm Jos van Boxtel, Arcadia Biosciences "Vegetative Production of Oil Targeted for High Biomass Crops" (W066) 5:34pm Olga Yurchenko, US Arid-Land Agricultural Research Center "Metabolic Engineering for Increasing Oil in Vegetative Plant Tissues" (W067) 5:52pm Thomas Vanhercke, CSIRO Agriculture Flagship "Maximizing TAG Accumulation in Plant Leaves by Combinatorial Metabolic Engineering" (W068)

97 Tuesday - January 13, 2015

4:00pm - 6:10pm The Resurgence of Reference Quality Genome Sequence - PACIFIC SALON 1 Organizer: Michael Schatz, Cold Spring Harbor Laboratory Co-chairs: Ian Korf, UC Davis and Daniel S Rokhsar, DOE Joint Genome Institute

4:00pm Michael Schatz, Cold Spring Harbor Laboratory "The Resurgence of Reference Quality Genome Sequence" (W790) 4:20pm Rod A Wing, Arizona Genomics Institute, University of Arizona "Old School/New School Genome Sequencing: One Step Backward - a Quantum Leap Forward" (W791) 4:40pm Kim C Worley, Baylor College of Medicine "Reference Genome Assembly in 2015 - Methods for the 21st Century" (W792) 5:00pm Timothy PL Smith, USDA-ARS, US Meat Animal Research Center "Current Options for Creating Genome Assemblies, and their Uses" (W793) 5:20pm Richard Green, University of California, Santa Cruz "An in vitro Long-Range Mate-Pair Protocol for Genome Scaffolding" (W794) 5:40pm Daniel S Rokhsar, DOE Joint Genome Institute "Reference Quality Genome Assembly" (W795)

4:00pm - 6:10pm Plant Phenotyping Partners - Together for Better High-Throughput Digital Phenotpying - ESQUIRE Organizer: Bas van Eerdt, WPS Chair: Steve Hunt, Qubit Systems

4:00pm Bas van Eerdt, WPS "Never considered: affordable solutions for ultra-high-throughput phenotyping" 4:20pm Stevens M Brumbley, University of North Texas "Plant Metabolic Engineering: Opportunities for Plant Phenotyping" 4:40pm Klara Panzarova, PSI "New tools for high-throughput plant phenotyping" 5:00pm Lukas Spichal, Palacký University Olomouc "Integrative automated high-throughput phenotyping of plant shoots and its application in development of plant growth regulators and stress-response studies" 5:20pm Gregoire Hummel, Phenospex "What is required to close the gap between greenhouse and field phenotyping?" 5:40pm Xavier Sirault, CSIRO Plant Industry - High Resolution Plant Phenomics Centre "Agriculture in the digital era"

98 Wednesday - January 14, 2015

7:00am - 8:00am Continental Breakfast - GOLDEN BALLROOM

7:00am - 12:00pm Registration - ATLAS FOYER

8:00am - 9:30am Plenary Talks - TOWN AND COUNTRY Chair: J Perry Gustafson, University of Missouri 8:00am Giles Oldroyd, John Innes Centre "Engineering Nitrogen-Fixing Symbiotic Associations in Cereals” 8:45am Christina Warinner, University of Oklahoma "Reconstructing Our Ancient Microbial Self"

9:30am - 10:30am Coffee Break - ATLAS FOYER

10:30am - 12:40pm What are the bottlenecks in high-throughput phenotype research? - PACIFIC SALON 3 Organizer: Edgar Spalding, University of Wisconsin Madison

10:30am A Mark Settles, University of Florida, Gainesville, FL "Maize Seed Phenotyping By Machine Vision" (W830) 10:50am Patrick S Schnable, Department of Agronomy, Iowa State University "Predictive Phenomics at Iowa State" (W831) 11:10am Matthew Thompson, Blue River Technology "Industrial Technology for Phenotyping Plants in the Field" (W832)

10:30am - 12:40pm Animal Genomics and Adaptation to Climate Change - SUNSET Organizer: Susan J Lamont, Iowa State University

10:30am Welcome Remarks 10:35am Jason W Ross, Iowa State University "Alterations in Body Composition and Transcriptional Profile as a Result of Prenatal Heat Stress Exposure in Pigs" (W025) 11:05am Max F Rothschild, Iowa State University "Genome-Wide SNP Scans Reveal Multiple Signatures of Selection in Egyptian Barki Sheep and Goats Raised in Hot Arid Environments" (W026) 11:35am Matt L Spangler, University of Nebraska-Lincoln "Sensitivity to Temperature Variation in Beef Cattle: Opportunities and Challenges for Selection" (W027) 12:05pm Susan J Lamont, Iowa State University "Genomics of Heat Stress in Poultry" (W028) 12:35pm Concluding Remarks

99 Wednesday - January 14, 2015

10:30am - 12:40pm UCSC Genome Browser - a home for all organisms - ROYAL PALM SALON 1-2 Organizers: Robert Kuhn, Univ. California Santa Cruz and Pauline Fujita, Univ. of California Santa Cruz

10:30am Robert Kuhn, UCalifornia Santa Cruz "UCSC Genome Browser - a Home for All Organisms" (W822) 11:30am Pauline Fujita, University of California Santa Cruz "UCSC Genome Browser - a Home for All Organisms" (W823)

10:30am - 12:40pm International Rice Informatics Consortium - PACIFIC SALON 2 Organizer: Kenneth L McNally, International Rice Research Institute 10:30am Nickolai Alexandrov, International Rice Research Institute "Update on IRIC Portal and Consortium" 10:50am Pierre Larmande, IRD, UMR DIADE, Institut de Biologie Computationnelle "Enabling Knowledge Management in the Agronomic Domain" 11:10am Rod A Wing, University of Arizona, Arizona Genomics Institute "TBA" 11:30am Ruaraidh Hamilton, International Rice Research Institute "TBA"

10:30am - 12:40pm Flax Genomics - TOWNE Organizers: Sylvie Cloutier, Agriculture and Agri-Food Canada and Christopher Cullis, Case Western Reserve University

10:30am Michael Deyholos, University of British Columbia "Variation in the Flax Genome and Its Application to Bioproducts" (W254) 10:50am Frank M You, Agriculture and Agri-Food Canada "The Refined Flax Genome, Its Evolution and Applications" (W255) 11:10am Christopher Cullis, Case Western Reserve University "The Flax Genome, a Revolution in Evolution" (W253) 11:30am Simon W Hawkins, University of Lille 1 "EMS Mutants and Functional Genomics to Dissect Cell Wall Biology in Flax" (W257) 11:50am Braulio Soto-Cerda, Agriaquaculture Nutritional Genomic Center (CGNA) "Genome Wide Association Study (GWAS) of Yield-Related Traits in Flax" (W258) 12:10pm Pat Heslop-Harrison, University of Leicester "Diversity and Characters in Ethiopian Linseed Accessions" (W259)

100 Wednesday - January 14, 2015

10:30am - 12:40pm Exploring Phytobiomes - ROYAL PALM SALON 3-4 Organizers: Kellye Eversole, IWGSC , Angela Records, USAID and Jan E Leach, Colorado State University

10:30am Jan E Leach, Colorado State University "Phytobiomes and Plant Health: Science and Policy" (W248) 10:50am Varghese Thomas, Bayer CropScience, Biologics "Phytobiome, a New View of Crop Production - an Industry Perspective" (W249) 11:10am J Alejandro Rojas, Michigan State University "Exploring the Oomycete Microbiome Associated with Soybean Seedling Diseases in the US" (W247) 11:30am Gary Felton, Pennsylvania State University "Mediation of Induced Plant Defenses by the Symbionts of Insect Herbivores" (W251) 11:50am Phillip Myer, USDA-ARS, US Meat Animal Research Center "Characterizing the Microbiome Across the Gastrointestinal Tract from Steers Differing in Feed Efficiency" 12:10pm Carolyn Young, The Samuel Roberts Noble Foundation "Understanding Beneficial and Pathogenic Microorganisms Impacting Production of Forage Crops" (W252)

10:30am - 12:40pm Computer Demo 4 - CALIFORNIA Organizers: Dave Clements, Johns Hopkins University and Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH)

10:30am Jorge A Duitama Castellanos, International Center for Tropical Agriculture (CIAT) "Bioinformatic Analysis of Genotype By Sequencing (GBS) Data with NGSEP" (C24) 10:45am Michael T Lovci, University of California, San Diego "Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis" (C25) 11:00am Ana Conesa, Centro Investigacion Principe Felipe "The STATegra NGS Experiment Management System" (C26) 11:15am Carrie L Ganote, Indiana University ""Roll" Your Own Genomics Cluster with Rocks and the XSEDE-Compatible Basic Cluster" (C27) 11:30am Meng Huang, Washington State University "BioGPU: A High Performance Computing Tool for Genome-Wide Association Studies" (C28) 11:45am Priya Ranjan, University of Tennessee, Knoxville "The DOE Systems Biology Knowledgebase (KBase): Progress Toward a System for Inference and Modeling of Biological Function in Plants" (C29) 12:00pm Takako Mochizuki, Genome Informatics Laboratory, NIG, ROIS "DNA Polymorphism Database from New-Generation Sequence Read Archive and Analytical Workflow" (C30)

101 Wednesday - January 14, 2015

10:30am - 5:00pm GMOD - GOLDEN WEST Organizer: Scott Cain, Ontario Institute for Cancer Research

10:30am Scott Cain, Ontario Institute for Cancer Research "The Future of GMOD and Chado" (W367) 10:50am Lacey-Anne Sanderson, University of Saskatchewan "KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes" (W368) 11:10am Richard D Hayes, DOE Joint Genome Institute "Phytozome Population Diversity Visualization in JBrowse: A very large Dataset Case Study" (W369) 11:30am Vivek Krishnakumar, J Craig Venter Institute "JBrowse within the Arabidopsis Information Portal (AIP) Project" (W370) 11:50am Monica C Munoz-Torres, Lawrence Berkeley National Laboratory "Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes" (W371) 12:10pm Arun S Seetharam, Iowa State University "The Teosinte (Zea mays ssp parviglumis) de novo Genome Assembly" (W372) 12:30pm Break 1:30pm Panel Discussion

12:30pm - 1:30pm Lunch (Vouchers Provided) - LION FOUNTAIN COURTYARD

7:30pm - 11:55pm Closing Banquet Dinner - GRAND EXHIBIT HALL

102 Future Meetings

See You Next Year:

PAG XXIV January 9-13, 2016 Town & Country Hotel San Diego, CA

And the Year After:

PAG XXV January 14-18, 2017 Town & Country Hotel San Diego, CA

And the Year After:

PAG XXVI January 13-17, 2018 Town & Country Hotel San Diego, CA

103 Corporate Sponsors

Thanks to our Major Corporate Sponsors for their support of the PAG XXIII Conference:

Affymetrix Final Program Advertiser

Bayer CropScience Note Pads

Fluidigm Hospitality Event

IBM Exhibit Hall Aisle Signs

LemnaTec Portfolio Bags

Pioneer DuPont Plenary Sessions

Quartzy Poster Networking Cards

Roche Diagnostic Corp. Mobile App Exhibit Hall Aisle Signs

Syngenta Computer Room Wireless Internet

Thermo Fisher Scientific Attendee Lanyards (Formerly Life Technologies™) Final program Advertiser

104 Acknowledgements

The Plant & Animal Genome Organizing Committee and Sponsors would like to thank the following people for their time and commitment to the Plant & Animal Genome XXIII Conference.

Abstracts Coordinators Gerry Lazo David Grant Victoria Carollo Blake

Travel Grants Coordinator Douglas Bigwood Tom Blake

Special Duty Coordinators Hans Cheng Max Rothschild

105 Travel Grant Awards

Jerome P. Miksche Travel Grant

Carlos Marcelino Rodriguez Lopez The University of Adelaide, Australia “We prefer them old: Epigenetic control of wine quality in response to grapevine age”

Earl J. Scherago Travel Grant

Susana M. Coelho French National Center for Scientific Research (CNRS), France “Genomic and evolutionary features of the brown alga Ectocarpus UV sex chromosomes”

Mike D. Gale Travel Grant

Yiliang Ding John Innes Centre, UK “A transformative platform deciphers the RNA structural code in living cells”

Scherago International Student Travel Grant(s): Plant

Udaykumar Kage McGill University, Canada “Identification of candidate genes in QTL 2DL and deciphering mechanisms of resistance against fusarium head blight in wheat based on metabolo-genomics”

Kelsey Wood University of California, Davis, USA “Genome Mining to Discover Pathogen Suppressors of Plant Programmed Cell Death”

K.N.S. Usha Kiranmayee Osmania University (ICRISAT), India “Fine genetic mapping of combined shoot fly resistance (SFR) and stay green (STG) traits on sorghum chromosome SBI-10”

106 Travel Grant Awards Scherago International Student Travel Grant Animal: Andrew S. Mason Roslin Institute, Edinburgh University, Scotland “A new look at the LTR retrotransposon content of the chicken genome”

Neal A. Jorgensen Genome Travel Grants

Cattle:

Ahmed Sallam University of Wisconsin, Madison, USA “An Across-Breed Genome Wide Association Analysis of Susceptibility to Paratuberculosis in Dairy Cattle”

Lydia J. Siebert University of Tennessee, Knoxville “Genome wide association study identifies loci associated with mastitis antibiotic therapy phenotypes following experimental challenge with Streptococcus uberis.”

Equine:

Robert Schaefer University of Minnesota, USA “Selection of tagging SNPs and imputation efficiency of 670K commercial SNP chip”

Swine:

Melanie Trenhaile University of Nebraska, Lincoln, USA “Genomic analysis of the interaction between energy intake and SNP genotypes on age at puberty”

Poultry:

Tae Hyun Kim University of California, Davis, USA “RNA-seq based genome-wide analysis of genomic imprinting in chicken lungs”

107 Travel Grant Awards

Sheep/Goat:

Michael Gonzalez Washington State University, USA “Artiodactyl MYADM-like Repeat Region: BAC Sequence Identifies 7 Open Reading Frames with Differing Lengths Between Reference Genome and Alternate Allele”

Bioinformatics:

Maria Haag University of Missouri, USA “Genome Wide Copy Number Variation in the Canine Genome”

Aquaculture Species Group Student and Postdoctoral Fellowship Bursaries

Orly Eshel The Hebrew University of Jerusalem, Israel “Detection of genes and microRNA involved in sex determination in Nile tilapia (Oreochromis niloticus)”

Ailu Chen Auburn University, USA “Allele-Specific Expression in Interspecific Catfish Hybrids”

Xin Geng Auburn University, USA “GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of Related Genes within Major QTLs for Columnaris Disease Resistance”

Carlos Rodriguez The University of Adelaide, Australia “Can epigenetic regulation of sex-ratios explain natural variation in self-fertilization rates?”

Agnieszka Stadnik Simon Fraser University, Canada “Yeast two-hybridization analysis of Atlantic Salmon sdY interactions”

108 Exhibitor Descriptions

Company Booth#

Advanced Analytical Technologies, Inc. 519 Ames, IA, USA www.aati-us.com Want faster results? The Fragment Analyzer™, uses capillary electrophoresis to quantify

and qualify Next Gen Sequencing (NGS) fragment libraries by automating the separation of fragments. Additionally, the instrument analyzes total RNA, and genomic DNA up to 40,000 bp. Other applications include SSR/Microsatellites, and mutation detection (TILLiNG).

Affymetrix 319 Santa Clara, CA www.affymetrix.com Affymetrix is transforming genomics in agriculture and offers a powerful range of genotyping and gene expression profiling solutions. Researchers and breeders can cost-

effectively identify, validate, and screen complex genetic traits in animals and plants – diploids or polyploids. Visit our booth to learn about our new genotyping solutions for complex genomes, an expanded selection of transcriptome expression profiling solutions, and molecular biology reagents.

Agilent Technologies 218 Santa Clara, CA www.agilent.com/genomics Agilent is a global leader in target enrichment for next-generation sequencing and genomic microarrays. The Agilent SureSelect and HaloPlex target enrichment systems enable researchers to easily choose which segments of a genome to sequence. Additional product

lines include microarrays for genome-wide measurement of gene expression and for comparative genomics hybridization, as well as SureFISH, a highly specific and sensitive product for oligonucleotide fluorescent in situ hybridization. In addition, Agilent offers a microfluidic Bioanalyzer to measure sample quality, and a full set of reagents, hardware, methods and bioinformatics software for genomic experiments.

ALCI SAS 422 Mauguio, France www.alci.fr ALCI is providing Vision Analysis turnkey solutions as Automatic Sampling tools for DNA Analysis, Seed Growth analysis system and Pathology Analysis tools. All Solutions are customized with the customer specifications.

109 Amphasys AG 503 Root D4, LU, Switzerland www.amphasys.com Amphasys provides a label-free solution for the analysis of single cell characteristics like cell size and morphology, viability, cell differentiation and ploidy. The Ampha Z30 impedance flow cytometers are used for the determination of pollen viability, maturation grade and ploidy levels. They result in significant improvements of the efficiency of breeding and production processes in the seed industry. Other applications are milk analysis and quality monitoring in biotechnological processes (inline analyses). The patented, chip- based technology eliminates time-consuming sample preparation steps like labeling and the need of expensive laboratory infrastructure. The compact instrument is equally suited for laboratory and production environment.

Amplicon Express, Inc. 307 Pullman, WA www.ampliconexpress.com Amplicon Express are experts on BAC technologies, Pooling systems (Pools & Superpools) and using Next Gen Sequencing to make maximum quality genome assemblies. We construct, screen, re-array, pool and NGS genomic DNA libraries. Please see us if your genome assembly combines all chromosomes into a haploid mosaic. We make the tools you need for an allele specific chromosome assembly. Remember: there are NO SNP's on a BAC clone!

Art Robbins Instruments 433 Sunnyvale, CA www.artrobbins.com View the COBRA SINGLE and 4-CHANNEL non-contact dispensing instruments for 96,

384 and 1536 well plates. Achieve fast on the fly dispensing of expensive Real-Time PCR reagents with low reagent dead volume. Also view the SCORPION high speed dispenser with flexible assay design software.

Artel 524 Westbrook, ME www.artel-usa.com Artel is the world-leading liquid handling quality assurance expert, specializing in solving liquid handling quality challenges for laboratories. Artel products and services enable quick, easy optimization of liquid handling processes for handheld pipettes and automated liquid handlers. Our customers include laboratories in the pharmaceutical, university, public health and environmental sectors.

110 aura optik gmbh 429 Jena, Germany www.aura-optik.com Our platform aureka® serves for microsampling on the whole and living organism, for accessing very small structures, even single cells, with different tools. Researchers can use it to stimulate, isolate or otherwise manipulate cells, e.g. microinject them. The key feature of aureka® is the true-sided observation and manipulation. The easy-to-use instrument consists of two dedicated 3D micromanipulators integrated into a ZoomMicroscope which is able to visualize objects in a large field of view with high resolution.

Aurora Biomed Inc. 127 Vancouver, BC, Canada www.aurorabiomed.com Aurora Biomed is a worldwide leader in the design and development of lab automation solutions for life science, environmental science, drug discovery/safety and chemical analysis research. We are committed to improving the quality of human and environmental health by providing products and services which facilitate a higher sample throughput while improving quality, accuracy and precision.

Azco Biotech 118 Oceanside, CA www.azcobiotech.com Azco specializes in solutions for DNA synthesis and detection. Visit our booth to learn more about recent developments in oligonucleotide synthesis for the development of sequence capture probes as well as gene synthesis. We provide a full line of reagents for DNA/RNA synthesis as well as Sanger and next-gen sequencing. Ask us about whats new! And, remember Azco offers a full like of service products for all of you Sequencers, Real-Time PCR instruments and synthesizers. Please let us help service your instruments.

BGI Tech 518 Cambridge, MA www.bgitechsolutions.com BGI Tech, a subsidiary of BGI - the world’s largest genomics organization, provides sequencing and bioinformatics service solutions for global customers in biomedical, agricultural, and environmental areas. Equipped with the industry’s broadest array of cutting-edge technologies, BGI Tech delivers rapid, cost-effective, and high-quality results that enable researchers to achieve scientific breakthroughs.

111 BioBam Bioinformatics S.L. 405 Valencia, Valencia, Spain www.biobam.com BioBam Bioinformatics is internationally recognised for its expertise in functional annotation and genome analysis and offers with Blast2GO a user-friendly solution specially for plant and animal research. Blast2GO is THE tool-box for functional annotation of novel sequences and the genome-wide analysis of annotation data. Our solutions transform the process of complex data analysis into an attractive and interactive task and reduces the gap between experimental work, bioinformatics analysis, and applied research. Something demonstrated by over 1000 citations. For a free trial or more details please visit: http://www.blast2go.com

BioChambers Incorporated 419 Winnipeg, MB, Canada www.biochambers.com Plant growth chambers, tissue culture chambers, low temperature chambers, and many more life sciences chambers manufactured to meet your needs. Looking for more growth area? BioChambers also manufactures rooms of various sizes to accommodate your laboratory space. If you’re looking for flexibility we have a series of chambers and rooms convertible between configurations optimal for tall plant research (high light levels with single tier shelving maximizing growth height) to short plant research (multiple tiers maximizing growth area). We are focused on delivering a quality product, excellent service, and innovative designs. Visit us to discuss your research requirements.

BioDiagnostics Inc. 527 River Falls, WI www.biodiagnostics.net BioDiagnostics, Inc. is an independent testing company focusing on the seed industry. BDI is a recognized leader in the areas of seedling germination, vigor, and physical purity; trait purity testing; genetic purity; event identity, zygosity, adventitious presence, molecular breeding & genomic testing services, and chemical analysis of seeds and treatments. BioDiagnostics is accredited by ISO/IEC 17025:2005 in all areas of seed testing. BDI is also accredited by the USDA Accredited Seed Laboratory program for standard seed testing services, including germination and physical purity.

112 BioFire Defense 507 Salt Lake City, UT www.BioFireDefense.com BioFire Defense designed the LightScanner, the first system to use Hi-Res Melting (HRM) analysis for mutation scanning and genotyping in a plate system. Standardization is important for research, making the plate format preferable in many settings. Mutations in PCR products are detected by the presence of heteroduplexes using our LCGreen Plus dye. Variations are identified by changes in the shape of the melting profile. HRM on the LightScanner is also being used for mutation discovery in tumor samples, yielding information on mutations present in low allele fractions and allelic imbalances between tumor and matched normal samples.

Bioline USA 224 Taunton, MA www.bioline.com Bioline develops and manufactures a wide range of molecular biology products. For 22 years Bioline has been crafting and perfecting novel manufacturing methods for PCR reagents that results in superior products with superior results for our customers. Consistent with the Bioline commitment to continuous improvement, we are pleased to announce we are now operating to the standards required to meet your ISO 13485 requirements. If amplifying DNA or RNA is part of your work flow, visit us at booth 224 to learn how ultra- high quality reagents can lead to better diagnosis.

Biomatters, Inc. 103 Newark, NJ www.geneious.com Biomatters develop software that accelerates the creation, publication and application of knowledge from ‘omic research, with a mission to translate genomic data into biological and clinical insights.Their flagship product Geneious is a DNA, RNA and protein sequence alignment, assembly and analysis software platform, integrating bioinformatic and molecular biology tools into a simple interface.

BioNano Genomics 330 San Diego, CA www.bionanogenomics.com The Irys platform from BioNano Genomics provides unprecedented insights into whole- genome biology. Genome maps are generated from massively parallel single-molecule visualization of extremely long DNA, providing long-range contiguity critical for de novo sequence scaffolding and analysis of structural variation in complex genomes. These maps provide dense genome-wide anchor points for ordering and orienting sequencing contigs or scaffolds to greatly increase completion and accuracy of de novo assemblies. Structural variants and repeats are measured directly within long “reads” for comprehensive analysis of the inaccessible genome.

113 Bioo Scientific 432 Austin, TX www.biooscientific.com Bioo Scientific provides innovative NEXTflex™ library prep kits offering reduced bias and increased accuracy, sensitivity, flexibility and speed for Illumina and Ion Torrent sequencing. The NEXTflex™ line includes library prep kits and barcoded adapters for rapid DNA-Seq, ChIP-Seq, MeDip/MeCAP, Bisulfite-Seq, and PCR-Free DNA-Seq. Amplicon- Seq cancer panels offer complete solutions for targeted sequencing, and 16S and 18S amplicon-seq kits are available for improved metagenomic analysis. For library prep of RNA samples we offer RNA-Seq and directional RNA-Seq solutions which incorporate molecular indexes for improved quantitation, and small RNA-Seq kits which incorporate randomized adapters to reduce ligation associated biases.

Bio-Rad Laboratories 408 Hercules, CA www.bio-rad.com Bio-Rad's life science technologies include products used for conventional PCR, real-time PCR, transfection, cell imaging, real-time PCR Kits and Reagents. Bio-Rad’s Digital Biology Center specializes in the development of advanced technologies for the rapidly growing field of digital biology – including complete solutions for droplet digital PCR and digital sequencing.

Biosearch Technologies 222 Petaluma, CA www.biosearchtech.com Biosearch Technologies, Inc., located in northern California, is an ISO 9001:2008 certified manufacturer of sophisticated probes and primers for real-time qPCR. Biosearch is the original source of BHQ® Probes and offers RealTimeDesign software, a free, web-based, qPCR assay design program for gene expression analysis, SNP genotyping, and multiplexed qPCR.

Boreal Genomics Inc. 631 Vancouver, BC, Canada www.borealgenomics.com Boreal Genomics provides sample preparation tools to enable genetic analysis of the most challenging samples in life science, environmental and clinical research. The Aurora nucleic acid purification system utilizes a novel electrophoretic approach to enable exceptional removal of PCR inhibitors, concentration of high molecular weight DNA 50kb–1Mb and recovery of trace DNA from low biomass or dilute samples.

114 Brooks Lifescience Systems 426 Spokane, WA www.brooks.com Brooks Life Science Systems is the leader in sample management solutions. In addition to automated stores and consumables, we offer a range of handheld plant sampling ‘PlantTrak Hx’, and benchtop leaf sampling ‘PlantTrak Lx’ systems to sample and track genetic material from plants, decreasing human error and avoiding cross contamination.

Canadian Science Publishing 129 Ottawa, Ontario, Canada www.nrcresearchpress.com Canadian Science Publishing is the not-for-profit publisher of the NRC Research Press journals. Our scientific and technical journals, published since 1929, attract authors and readers from more than 175 countries and are available in print, online, and via mobile devices. Submit your next paper to Genome! This monthly journal was established in 1959, and publishes original research articles, reviews, mini-reviews, and commentaries. The areas of interest include general genetics, cytogenetics, molecular genetics, evolutionary genetics, population genetics, developmental genetics, plant genetics, microbial genetics, mammalian genetics, genomics, and other related areas.

Center for Aquaculture Technologies 622 San Diego, CA www.aquatechcenter.com The Center for Aquaculture Technologies takes on custom contract research projects. The company focuses include genotyping in support of breeding programs, managing breeding programs, genomics projects, fish health and nutrition trials, and genetic engineering.

CLC bio - a QIAGEN Company 423 Aarhus, DK, Denmark www.clcagro.com CLC bio, a QIAGEN Company, is the world’s leading bioinformatics software developer and the only one that provides an analysis platform where both desktop and server software are seamlessly integrated and optimized for best performance. Our software enables you to run advanced workflows and analyze big intricate datasets, which is why the world’s leading agricultural companies and institutions are using our platform for plant and animal research.

115 Computomics 613 Tuebingen, Baden-Wuerttemberg, Germany www.computomics.com Advanced NGS Analysis for Crops. Computomics is a team of world-leading experts in plant research and bioinformatics, offering cutting-edge next-generation sequencing (NGS) analyses for agriculture biotech companies and crop scientists. Whether you are concerned with crop improvement, seed production or plant protection, Computomics helps navigate the complexities of grain, vegetable, fruit and other genomes. Our advanced bioinformatics services provide our customers with quality NGS data interpretation from state-of-the-art genomics tools and technologies. Let us help you achieve your research goals.

Conviron 617 Winnipeg, MB, Canada www.conviron.com Established in 1964 and with a global sales, distribution, and service network – Conviron is the world leader in the design, manufacture and installation of controlled environment systems for plant science and agricultural biotechnology research. Conviron’s reach-in plant

growth chambers, walk-in rooms and Argus Control Systems (a Conviron company) provide precise, uniform, and repeatable control of temperature, light, humidity, dehumidification, CO2, and other environmental conditions. All environmental parameters can be remotely programmed, monitored and analyzed with unparalleled accuracy and convenience. Learn more at www.conviron.com or contact us for more information at [email protected]

Crop Science Society of America 531 Madison, WI www.crops.org The Crop Science Society of America (CSSA) is a prominent international scientific society headquartered in Madison, WI. Society members are dedicated to the conservation and wise use of natural resources to produce food, feed, and fiber crops while maintaining and

improving the environment. Since its inception, CSSA has continued to evolve, modifying its educational offerings to support the changing needs of its members. Today, CSSA is seen as a progressive scientific society meeting the needs of its members through publications, recognition and awards, placement service, certification programs, meetings, and student activities

116 Data2Bio, LLC 133 Ames, IA www.data2bio.com Data2Bio™ helps you overcome the challenges of working with increasing large and complex genomes. Our proprietary BSR-seq and BSD-seq approaches enable quick and low- cost mutant mapping, while tGBS™ provides accurate genotyping of individuals without imputation and is effective in heterozygotes, polyploids, and species without sequenced reference genomes.

Diagenode 226 Denville, NJ www.diagenode.com Diagenode is a leading global provider of complete solutions for epigenetics research and biological sample preparation. We offer innovative shearing and automation/semi- automation instruments, epigenetics reagent kits, NGS library preparation kits, and high- quality antibodies to streamline DNA methylation, ChIP, and ChIP-seq workflows. The company’s latest innovations include a full ChIP and library preparation automation system, the industry’s most validated ChIP /ChIP-seq antibodies and the Megaruptor shearing system for long fragment generation of up to 75kb for NGS.

DNA Genotek 120 Ottawa, Ontario, Canada www.dnagenotek.com DNA Genotek is focused on improving DNA collection with an all-in-one system for the collection, stabilization, transportation and purification of samples. The company’s Performagene™ product offers producers, breed societies, laboratories, researchers and veterinarians an easy-to-use, reliable and non-invasive method to collect high quality and high quantity DNA from animals.

DNA LandMarks Inc. 508 St-Jean-sur-Richelieu, Quebec, Canada www.dnalandmarks.com DNA LandMarks is an agricultural genomics service lab that provides DNA marker services to plant and animal breeders and researchers all over the world. These services include Next Generation Sequencing, SNP marker development, mapping, marker-assisted selection, marker-assisted backcrossing, fingerprinting and more.

117 DNA Link, Inc. 204 San Diego, CA www.dnalink.com/english A full service sequencing and bioinformatic service provider supporting research, medical, agricultural, and environmental clients across the world. By providing the right amount of experimental design with optimal next generation sequencing technologies, we achieve the highest level of expertise that is demanded by our customers. DNA LINK, Your Link to Precision Genomics. Please stop by booth #204 at PAG to talk with our scientists about your needs and received a free gift. Ask about our service promotions being offered during PAG to receive discount pricing on your sequencing projects.

DNA Solutions, Inc. 206 Oklahoma City, OK www.dnasolutionsusa.com DNA Solutions, Inc. is a genetic testing laboratory. Services include animal genotyping/biomarker development, parentage confirmation, registry management, bacterial/fungal identification, and forensic investigation support. DNA Solutions is accredited to ISO 17025, accredited through the American Association of Blood Banks (AABB) for relationship testing, and has its New York State Department of Health Laboratory Permit. The laboratory provides R&D expertise in DNA sequencing for forensics, animal, and human genotyping. DNA Solutions provides genotyping and parentage confirmation to the North American Deer Registry and provides genotyping services to wildlife enforcement agencies nationwide.

DNASTAR, Inc. 223 Madison, WI www.dnastar.com DNASTAR has pioneered development of desktop computer and cloud sequence assembly and analysis software to increase life scientists’ productivity for over 25 years. DNASTAR’s products include Lasergene software for traditional sequence analysis, next-generation DNA and RNA sequence assembly and analysis, and protein sequence and structure visualization.

DOE Systems Biology Knowledgebase (KBase) 203 Oak Ridge, TN www.kbase.us The Department of Energy Systems Biology Knowledgebase (KBase) is an open software and data platform designed to enable researchers to predict and ultimately design biological function. KBase’s unified data model allows users to perform integrated analyses across plants, microbes, and their communities with a wide range of tools, and to publish their data, methods, results and thoughts in persistent, citable, executable, and reusable electronic narratives allowing scientists to build on the work of others. KBase's open platform will enable external developers to integrate their analysis tools, facilitating distribution, comparative tool analysis, and access to enterprise-class computing.

118 Doriane 522 Nice, France www.doriane.com Doriane™ provides turnkey IT solutions for management of research processes and data. Our 25-year-expertise consists in organizing and securing research departments’ collaborative information, in particular with our standard software. Highly configurable, LABKEY™ handles processes and data of every activity in seed research departments. Meet us on booth 522 !

Douglas Scientific 303 Alexandria, MN www.douglasscientific.com Douglas Scientific provides revolutionary solutions for low to ultra-high throughput nucleic acid analysis. Our point of need portable instrument uses DNAble isothermal DNA amplification chemistry to generate results in under 15 minutes. The Array Tape® Platform provides HTP results in a fully integrated, automated, and inline instrumentation that leverages the cost saving benefits of Array Tape®, a flexible microplate replacement.

Dow AgroSciences 329 Indianapolis, IN www.dowagro.com Dow AgroSciences, based in Indianapolis, Indiana, USA, is committed to discovering, developing, and bringing to market crop protection and plant biotechnology solutions for the growing world. In 1989, The Dow Chemical Company entered a joint venture with the

Elanco Plant Sciences business of Eli Lilly and Company to form DowElanco. In 1997, The Dow Chemical Company acquired 100 percent ownership of the business and renamed it Dow AgroSciences. Today, we employ more than 8,000 people worldwide, and our 2013 global sales were $7.1 billion. Follow Dow AgroSciences on Facebook, Twitter, and YouTube.

EMBL-EBI 406 Hinxton, Cambridge, United Kingdom www.ebi.ac.uk The European Bioinformatics Institute is a non-profit research institute which is part of EMBL, Europe’s flagship laboratory for the life sciences. EMBL-EBI provides freely available data covering the spectrum of molecular biology. While we are best known for our bioinformatics services that help you to make sense of your biological data, EMBL-EBI also has a diverse bioinformatics research programme. EMBL-EBI's extensive hands-on training and online learning portal help researchers to make the most of the incredible amount of data being produced every day in life science experiments. We are located on the Wellcome Trust Genome Campus near Cambridge, UK.

119 EMD Millipore 331 Billerica, MA www.emdmillipore.com EMD Millipore is the Life Science division of Merck KGaA of Germany, supporting research, development and production of biotech and pharmaceutical drug therapies with solutions for cellular analysis, multianalyte network elucidation and functional genomics. Our validated antibodies, inhibitors, assays and molecular biology tools advance chromatin, DNA methylation and RNA analysis.

EnviroLogix Inc 630 Portland, Maine envirologix.com EnviroLogix Inc. develops immunoassay (ELISA) and DNA-based (DNAble) test kits for agricultural as well as food and feed safety markets. Our innovative DNAble chemistry promises to change the economics of testing in plant and animal genomics, with the sensitivity and specificity of PCR. EnviroLogix specializes in custom assay development.

Eurofins Genomics 523 Ebersberg, Germany eurofinsgenomics.com Eurofins Genomics provides high-quality next generation sequencing, genotyping, gene expression, gene synthesis, DNA/RNA oligonucleotides and premium-free overnight DNA sequencing. Eurofins Genomics is part of the Eurofins Scientific group which provides bioanalytical testing and consulting services. With 16,000 staff in more than 190 laboratories across 36 countries, Eurofins Scientific excels as a world leader in laboratory services in the fields of R&D, Agriculture, Animal & Plant breeding, Food & Feed production, Pharma & Diagnostics, as well as Environmental and Consumer Products Testing. Find us at eurofinsgenomics.com

Evergreen 505 Roswell, GA www.meetevergreen.com Next Generation Sample Preparation. Automation, Chemistry and Consumables to Extract, Purify, and Process Samples for Agricultural biotechnology. Increasing yield, throughput and sample integrity through innovative science and automation. Supporting scientist from extraction to downstream application.

Fast ID (by Genetic ID) 633 Fairfield, IA www.fastidkit.com Fast ID, developed by Genetic ID, is a silica based purification kit that doesn't require organic extraction or ethanol precipitation. A streamlined and cost effective process that yields exceptionally pure DNA from a wide range of sample types. Multiple downstream applications. Suitable for animal, plant, bacterial materials. Higher PCR efficiency. Column, 96-well high throughput and FastMag formats are available.

120 Floragenex 506 Eugene, OR www.floragenex.com Floragenex is a biotechnology company that provides innovative solutions for genomic

analysis in human, plant and animal systems. With multiple offices located on the US Pacific coast, our technologies allow investigation of genomes at unprecedented levels for academic, governmental and commercial researchers.

Fluidigm Corporation 511 South San Francisco, CA www.fluidigm.com We strive to partner with customers to pursue truth in the complex biological world. Our core microfluidic technology provides rapid, simplified and elegant workflows for high-

throughput qPCR or next-generation sequencing library preparation. Whatever the application, we never compromise; rather, we deliver cost-effective, easy-to-deploy, easy-to- scale and easy-to-use workflows that produce the high-quality data your lab demands. Let’s partner. Engage with us at fluidigm.com

FLUIDX 428 Charlestown, MA www.fluidx.eu We have great products; consumables, instrumentation and 2D bar-code reading solutions that help our customers successfully store and track their valuable samples for future research. At PAG, we will be showing our newly released Aperio semi automated screwcap capper/decapper and our new Perception high speed 2D reader as well as our full line of 2D barcoded micro tubes and cryo tubes.

Formulatrix, Inc 202 Bedford, MA www.formulatrix.com Formulatrix was established in 2002 to provide protein crystallization automation solutions. Since then, we've started developing the next generation of liquid handlers using

microfluidic technology and have most recently began working on a digital PCR solution called the Constellation. Headquartered in Waltham, Massachusetts, we supply software and robotic automation solutions to leading pharmaceutical companies and academic research institutions around the world. Our team works tirelessly to provide the best products in the industry with support that is second to none.

121 Genalice 403 Harderwijk, Netherlands www.genalice.com GENALICE is a young and dynamic company developing groundbreaking software solutions to accelerate and improve next-generation sequencing analysis. Its first product, GENALICE MAP, improves the data influx for analysis. MAP is data pre-processing software. It maps the short reads generated by sequencers up to 200x faster and more accurate than conventional tools. Besides it is capable to reduce the storage footprint significantly. This makes storage of DNA data affordable and sharing much easier.

Gene Codes Corporation 323 Ann Arbor, MI www.genecodes.com Gene Codes Corporation develops Sequencher®, DNA sequence analysis software for

Sanger and NGS data sets. Scientists around the world rely on Sequencher’s intuitive user interface, speedy alignment algorithms, and powerful SNP discovery tools to deliver results. Stop by our booth to see what’s new in Sequencher 5.3.

GeneSeek 320 Lincoln, NE www.geneseek.com GeneSeek provides comprehensive research, product development and delivery solutions for the Life Science, Agribusiness, Pharmaceutical and Biotechnology industries. GeneSeek is the largest global provider of DNA testing for animal agribusiness and veterinary medicine with capabilities in place to provide ultra high throughput solutions at low cost.

Genetwister Technologies B.V. 128 Wageningen www.genetwister.nl Genetwister is an innovative biotechnology company specialized in genomic breeding, green biotechnology and bioinformatics of agri- and horticultural crops. We are an expert in marker discovery using NGS technologies, genetic modification and diagnostics using expression profiling and functional genomics. We develop proprietary software for database management, data-analysis, data-visualization and data-mining.

GenoLogics Life Sciences 126 Victoria, British Columbia, Canada www.genologics.com GenoLogics is a leading provider of laboratory information management system (LIMS) software designed for use with genomics and mass spec technologies in regulated and research labs. Clarity LIMS offers quick implementation, an intuitive interface and features that makes it a valuable investment for labs utilizing NGS and other -omics technologies.

122 GenomeWeb 420 New York, New York www.genomeweb.com GenomeWeb is an independent online news organization based in New York. Our editorial mission is to cover the scientific and economic ecosystem spurred by the advent of high- throughput genome sequencing. We operate the largest online newsroom focused on advanced molecular research tools in order to provide our readers with exclusive news and in-depth analysis of this rapidly evolving market. Our readers include scientists, technology professionals, and executives who use and develop the latest advanced tools in molecular biology research and molecular diagnostics.

GenScript USA Inc. 131 Piscataway, NJ, USA www.GenScript.com GenScript is the leading gene, peptide, protein and antibody research partner for basic biological sciences, translational research, and early stage drug discovery. Since the establishment in 2002, GenScript has grown to be a global Contract Research Organization that provides services and products to over 86 countries. The company currently offers biological research services encompassing gene and peptide synthesis, custom antibodies, protein expression, antibody and protein engineering, and in vitro and in vivo pharmacology – all with the goal to Make Research Easy. With headquarters in New Jersey, USA, GenScript has subsidiary companies in Europe, Japan and China.

Golden Helix 124 Bozeman, MT www.goldenhelix.com Golden Helix is a leading bioinformatics organization specializing in genetic association software and services. Its flagship product, SNP & Variation Suite, is an integrated collection of high-performance analytic tools for managing, analyzing, and visualizing complex genomic data. SVS offers a rich, multi-dimensional approach to studying the genomics of almost any species.

Horticulture Research 620 Nanjing, Jiangsu, China www.nature.com/hortres Horticulture Research, published by Nature Publishing Group and Nanjing Agricultural University, is an open-access international journal devoted to publish original research and reviews on basic biology of horticultural plants. The journal aims to become a highly respected and trusted source of cutting-edge information in the field of horticulture. Please visit www.nature.com/hortres for submission instruction and published papers.

123 IBM 107 Foster City, CA www.ibm.com IBM is a globally integrated technology and consulting company headquartered in Armonk, New York. With operations in more than 170 countries, IBM develops and sells software and systems hardware and a broad range of infrastructure, cloud and consulting services. Today, IBM is focused on four growth initiatives - business analytics, cloud computing, growth markets and Smarter Planet. IBMers are working with customers around the world to apply the company's business consulting, technology and R&D expertise to build systems that enable dynamic and efficient organizations, better transportation, safer food, cleaner water and healthier populations.

Illumina, Inc. 119 San Diego, CA www.illumina.com Illumina provides innovative sequencing and array-based solutions for genotyping, copy number variation analysis, methylation studies, gene expression profiling, and low-multiplex analysis of DNA, RNA, and protein. Our agrigenomics technologies help plant and animal breeders and researchers identify desirable traits, leading to healthier and more productive crops and livestock.

iPlant Collaborative 231 Tucscon, AZ www.iplantcollaborative.org The iPlant Collaborative is an NSF-funded (#DBI-0735191) cyberinfrastructure project that provides computation, data storage, and bioinformatics tools and platforms that serve researchers and educators in the life sciences. These resources service investigations in all domains of life, and can be customized to meet a broad variety of research and educational objectives. iPlant's ultimate goal is to enable access to computational resources, enabling investigators or educators to solve problems that would otherwise be difficult or impossible to address. Free accounts are available at user.iplantcollaborative.org

KAPA Biosystems 324 Wilmington, MA www.kapabiosystems.com Kapa Biosystems is a life science reagents company that utilizes a proprietary directed evolution technology to optimize enzymes for PCR, real-time PCR and next-generation sequencing applications. Industry thought leaders are presenting at Kapa’s workshop

Tuesday, 1:30 pm in the Towne Room regarding Kapa’s new products for RNA and DNA sequencing, and a new DNA polymerase for qPCR probe-based assays that is extremely resistant to common inhibitors in plant and animal samples. Visit www.kapabiosystems/PAG to learn more about the program and guest speakers. If you can't make the workshop, visit booth 324 to find out more about Kapa's products.

124 KeyGene 309 Rockville, Maryland, USA www.keygene.com KeyGene is a leader in trait discovery, molecular breeding and phenotyping,and uses its integrated and proprietary technology platforms to enable high-value product development for its partners in the industry. KeyGene adds value to any partnership with its innovative science, solid product concepts and most of all, its end-to-end capabilities. Leads to Seeds track record: * Numerous KeyGene-enabled seed products * Hundreds of commercially used Biomarkers * Long-term strategic partnerships KeyGene is headquartered in Wageningen, the Netherlands, with its North and South American headquarters located in Rockville, Maryland, USA and a joint-lab at the Shanghai Institute of BiologicalSciences in Shanghai, China.

Kyazma B.V. 619 Wageningen, The Netherlands www.kyazma.nl Kyazma® works on implementing powerful statistical genomics methods into easy to use, stable and fast software tools. JoinMap® and MapQTL® are Kyazma's well-known genetic mapping and QTL analysis software products. Kyazma also organizes courses on genetic mapping and QTL analysis.

Labcyte Inc. 327 Sunnyvale, CA www.labcyte.com Labcyte, a global biotechnology tools company, is revolutionizing liquid handling. Echo liquid handling systems use sound to precisely transfer liquids without contact, eliminating the use of pipettes. Labcyte instruments are used worldwide throughout the pharmaceutical industry, diagnostic companies, genome centers, genomic service companies, biotechnology firms, contract research organizations, and academic institutions. Our customers work across a wide spectrum of scientific research, including drug discovery, genomics, proteomics, diagnostics, precision medicine, and imaging mass spectrometry. www.labcyte.com.

LabSource, Inc. 529 Northlake, IL www.labsource.com LabSource has been serving science since 1989 as a distributor of laboratory supplies and equipment with added focus on hard to find consumables and labware for specialty applications in lab automation and genomics. See for yourself how LabSource can help add value as a supplier for your needs.

125 Lathrop Engineering Inc. 621 San Jose, CA www.lathropengineering.com Lathrop is a full-service contract product development firm specializing in end-to-end development solutions from concept through to commercial product. We offer complete design, engineering, and manufacturing support: program management, industrial design, mechanical engineering, software and electronic engineering, optics design/engineering, and system analysis for life science/diagnostic instrumentation and medical devices. ISO9001

LC Sciences LLC 325 Houston, TX www.lcsciences.com LC Sciences offers RNA sequencing and custom microarray services for nucleic acid profiling and functional analysis. Illumina sequencing technology provides an excellent tool

for microRNA/small RNA discovery in any species. Our flexible µParaflo® custom microarrays enable reliable microRNA/small RNA profiling. We have standard arrays designed for all species listed in the latest release (21) of miRBase and the Plant MicroRNA Database. Or create a completely custom array to suit your specific research goals. Gene Expression and QPCR assay services also available.

LemnaTec GmbH 209 Aachen, NRW, Germany www.lemnatec.de LemnaTec’s team of scientists develops comprehensive hard- and software solutions for Plant Phenomics, high-throughput and high-content screening of plants, seedlings, insects and other organisms. Digital images are primarily taken by the Scanalyzer systems PL, HTS and 3D in biologically significant wavelengths: RGB, PSII-Fluorescence, NIR, IR and hyper spectral cameras.

Lexogen GmbH 404 Vienna, Österreich, Austria www.lexogen.com Lexogen is an Austrian transcriptomics and NGS company located at the Campus Vienna Biocenter. Lexogen is developing technologies to enable complete transcriptome sequencing. Our portfolio includes kits and services for RNA sequencing sample preparation. The SENSE™ Total/mRNA-Seq Library Prep Kit generates ready-to-sequence libraries with superior strand-specificity from total RNA within just 4 hours. QuantSeq™ 3'mRNA-Seq Library Prep Kit is a fast, strand-specific and cost-effective protocol for sequencing of fragments close to the 3’ end of the polyadenylated RNA. TeloPrime™ Full- Length cDNA Amplification Kit generates full-length cDNA from total RNA. Most kits are available for Illumina and Ion Torrent platforms.

126 LGC 302 Hoddesdon, Herts, United Kingdom www.lgcgroup.com/genomics LGC Genomics is unique in the genomics market place with respect to our position both as a laboratory services provider and a developer of proprietary chemistries and instrumentation to drive cost efficient genomics solutions. “We use what we sell and sell what we use”. We have the largest genotyping lab in the world in the UK with labs in Berlin-Germany, Boston- USA and London-UK.

Life Technologies™ (Now Thermo Fisher Scientific) 111 Carlsbad, CA www.lifetechnologies.com/agbio

Lucigen Corporation 105 Middleton, WI www.lucigen.com At Lucigen, we deliver advanced molecular biology products and services to life scientists by inventing solutions to the most difficult problems in Next Gen Sequencing, DNA cloning, amplification, and protein expression.

Macrogen 326 Seoul, Korea, South dna.macrogen.com/eng/ Macrogen is dedicated to offering publication quality Next-Generation Sequencing services at the most affordable cost through a whole menu of applications including: whole genome, transcriptome, metagenomic sequencing and many other applications are available with optimized analysis services pipelines. Our large capacity allows us to offer expedited services to all of our clients.

Maverix Biomics, Inc. 328 San Mateo, CA www.maverixbio.com Maverix provides scientists with an easy-to-use cloud-based solution for data analysis and visualization. Optimized to explore the role of RNA in cell regulation, the Maverix Analytic Platform allows researchers to ask questions, build communities of discovery, and integrate in context with the latest viral, bacterial, vertebrate, and plant genomic data.

127 MO BIO Laboratories, Inc. 220 Carlsbad, CA, USA www.mobio.com MO BIO Laboratories, Inc. has developed innovative tools for researchers in molecular biology since 1993. A global leader in solutions for soil and microbial nucleic acid purification, MO BIO's Power kits contain patented Inhibitor Removal Technology® for removal of PCR inhibiting substances during the nucleic acid purification procedure. MO BIO’s products enable isolation of high quality, pure nucleic acids from challenging samples including soil, water, plants, seeds stool, biofilm, microbial cultures and more. Our focus is quality products that work, save time and function for all sample types, not just easy ones.

MOgene, LC 225 St. Louis, MO www.mogene.com MOgene's mission is to provide “best in class” services to its partners in deploying genomic capabilities to bring critical solutions to their operations. Services provided include Microarrays using Agilent platform, NextGen sequencing using Roche's 454 FLX plus, Illumina MiSeq and HiSeq, Sequence capture, Real-time PCR using ABI 7900 platform, RNA/DNA isolation, and Bioinformatics.

Monsanto Company 421 St. Louis, MO www.monsanto.com Monsanto is one of the world’s leading agricultural technology companies. We develop better seeds through a mixture of traditional breeding and world-class biotechnologies. Every day we invest over $3 million in research to help the world’s farmers produce more with less resources.

MYcroarray 615 Ann Arbor, MI www.mycroarray.com MYcroarray is a leading manufacturer of custom molecular probes for genomic applications, including capture baits libraries for targeted sequencing, fluorescent probes libraries, oligonucleotide libraries and oligonucleotide microarrays. We are the only provider of truly error-free oligonucleotides for synthetic biology. We also offer microarray hybridization, sequence capture and sequence discovery services.

NanoString Technologies 102 Seattle, WA www.nanostring.com NanoString Technologies is a privately-held provider of life science tools for translational research and developer of molecular diagnostic products. The company’s nCounter® Analysis System delivers highly-multiplexed, direct profiling of individual molecules in a single reaction without amplification. Applications include Gene Expression, Single-Cell, miRNA and CNV.

128 National Center for Genome Resources (NCGR) 402 Santa Fe, NM ncgr.org The National Center for Genome Resources in Santa Fe, NM, a leader in NGS and data analysis, offers Bioinformatics-in-a-Box™, a web-based system for Bioinformatics novices to overcome barriers to NGS analysis 365x24. With built in data management, compute power and secure social networking capabilities, knowledge discovery has never been faster!

New England Biolabs, Inc. 125 Ipswich, MA, www.neb.com New England Biolabs, Inc. leads the industry in the discovery and production of enzymes for molecular biology applications. NEB has a large and growing range of NEBNext® kits for sample preparation for next-generation sequencing, including kits for fast, low-input library preparation for DNA, RNA and microbiome sample enrichment. Products for PCR include Q5® High-Fidelity DNA Polymerase and OneTaq® DNA Polymerase, for high- performance, reliable amplification regardless of GC content. NEB’s expertise in developing and manufacturing products of the highest quality, coupled with best in class technical support makes NEB a first choice for customers demanding optimized reagents for advanced technologies.

New Phytologist 530 Lancaster, United Kingdom www.newphytologist.org New Phytologist is an international journal offering rapid publication of high-quality, original research in plant science. Owned by the non-profit-making New Phytologist Trust we are dedicated to the promotion of plant science. Our activities range from funding symposia and workshops to ensuring free access for our prestigious Tansley reviews.

NIH, NLM, NCBI 618 Bethesda, MD www.ncbi.nlm.nih.gov NCBI provides free access to biomedical molecular, literature and medical genetics databases including PubMed, Gene, Nucleotide, Protein, dbSNP, ClinVar, MedGen, and the Genetic Testing Registry. It also provides analysis tools for sequence alignment (BLAST), structure comparison (VAST), exon and variation mapping (Splign, Variation Reporter, Remap).

129 Norgen Biotek Corp 333 Thorold, Ontario, Canada www.norgenbiotek.com Norgen Biotek provides researchers with innovative kits for Molecular Diagnostics (MDx), Sample Collection/Preservation [from Urine, Stool, Plasma/Serum/Blood, Saliva] and microRNA/RNA/DNA/Protein Purification/Clean-Up (spin-column/96-well). Our kits feature exceptional quality, ease-of-use and sensitivity. Norgen Biotek provides researchers with the tools to address any sample preservation and preparation challenge. *Best-in-Class Plant RNA/DNA Purification*

Novogene Bioinformatics Technology Co., Ltd 612 Beijing, China www.novogene.com/en/ Novogene is the leading genomic solution privider in China. Equipped with cutting-edge high-throughput sequencing platforms, including 10 Hiseq X, 10 Hiseq2500/2000, 1 NextSeq 500, and 4 Miseq sequencing systems, Novogene can provide service including Whole Genome Resequencing, Whole Exome Sequencing, mRNA Sequencing, non-coding RNA Sequencing and Epigenome Sequencing. Within the past three years, Novogene has completed numerous major projects, with findings acknowledged and published by top- ranked journals such as Science and Nature series.For more information, go to visit our website: www.novogene.com/en/

NRGene 504 Ness Ziona, Israel nrgene.com NRGene is a computational genomics company that analyzes genomic Big-Data for the enhancement of field performance of crop plants. By employing experienced algorithm designers, software engineers, plant breeders and geneticists, NRGene developed DeNovoMAGIC(TM) and GenoMAGIC(TM) . These ground-breaking computational tools support most sophisticated R&D processes in leading seed companies and academia. These tools reconstruct and compare full genomes of unlimited number of individual plants, and associate genome variability with field performance. NRGene's tools were proven successful in analyzing most complex and diverse genomes, as wheat, maize and forestry, implemented in sophisticated research projects targeting gene discovery, genome-wide-association- mapping and genomic selection.

Omega Bio-tek 109 Norcross, GA www.omegabiotek.com Omega Bio-Tek manufactures a complete line of DNA|RNA isolation kits utilizing magnetic beads and silica filter technology for both high throughput facilities and individual labs. Offering over 10 different DNA and RNA Purification systems for plant samples, Omega Bio-tek provides an affordability and selection that is unmatched.

130 Pacific Biosciences 230 Menlo Park, CA www.pacificbiosciences.com The PacBio® RS II Sequencing System generates long reads over 20,000 bp with high confidence for applications from targeted sequencing to improving large reference genomes. Additional capabilities include de novo genome assembly, data-driven genome annotation, isoform sequencing, understanding of structural variations, targeted gene family surveys, complete BAC sequencing, and epigenetic insights through detected base modification.

Persephone c/o Ceres, Inc. 205 Thousand Oaks, CA, www.persephone.net Ceres, Inc. is re-defining the genome browser with its Persephone software, which offers powerful, new ways to explore both plant and animal genomic data. Persephone has an

intuitive, easy-to-understand interface that provides multiple chromosome views, trait ontologies, genetic maps, real-time gene translation and more. Cloud-based service and in- house installations are available. FREE, 21-day trial to PAG attendees. Stop by Booth 205 for details.

Phenome Networks 409 Rehovot, Israel, Israel www.phenome-networks.com Phenome Networks is a next-generation bioinformatics company with a state-of-the-art platform that organizes the wealth of genotype-to-phenotype data generated in the plant breeding process and genetic research in commercial companies and academic institutions. Its Project Unity is a unique collaborative network to host, manage, analyze and share private as well as all public domain genotypic and phenotypic research data in a common and unified platform, unleashing the potential of improved plant varieties. Project Unity is FREE FOR ACADEMIC USE.

Phenospex 525 Heerlen, Netherlands www.phenospex.com Phenospex is a biotech company, which develops and provides hard- and software for automated plant screening and plant phenotyping especially for the application under field-

or semi field conditions. We are a mixed team of plant biologists, engineers, software developers and data specialists. Our key objective is to provide fully automated and integrated phenotyping platforms, which delivers high quality data and analysis tools in order to extract knowledge to answer scientific questions.

131 Photon Systems Instruments (PSI) 502 Brno, Czech Republic www.psi.cz Photon Systems Instruments (PSI) develops and provides sophisticated, high-end scientific instrumentation for research in biological sciences. PSI provides devices for laboratory, greenhouse and field research in areas of plant and algal biotechnology. Our key focus is to provide solutions in the field of advanced imaging as kinetic chlorophyll fluorescence and reflectance techniques, intelligent growth chambers, high-tech photobioreactors, and customized platforms for high-throughput plant phenotyping. Our expertise in high- precission plant phenotyping is in manufacturing fully automated platforms for high- throughput monitoring of plant performance and architecture in controlled environments, greenhouse or in the field.

PhytoTechnology Laboratories 227 Shawnee Mission, KS www.phytotechlab.com PhytoTechnology Laboratories® is a global supplier of microbiological media, biochemicals, plant tissue culture media, and laboratory supplies for the plant pathology, plant molecular biology, and plant science markets. Visit our booth for more details and information about our products and company. For unmatched quality & service, choose PhytoTechnology Laboratories®.

Plant Genomics Outreach Consortium 407 Columbia, MO www.goo.gl/O6dI2 Outreach for public plant genome data resources including: AFFRC RiceXPrO and RAP- DB; Crop Ontology; Gramene; JCVI Arabidopsis AIP and Medicago; Legume Information

Services; MaizeGDB; MainLab (GDR (Rosacea), other crops); OryzaBase; Plant Genome DataBase-Japan (PGDBJ; Plant Ontology; SoyBase; SoyKB. The website provides links to these resources, and their presentations at PAG XXIII, beginning Dec 5, 2014, with updates up to time of the meeting.

Progeny Software, LLC 623 Delray Beach, FL www.progenygenetics.com Progeny LIMS is a modular platform that allows clients to purchase only the software components and custom services that they need. The interface ties together genotype, phenotype and sample information to provide a powerful reporting tool for research and lab environments. The database is powered by an SAP SQL Anywhere backend database which can be configured using an intuitive non-programming admin interface. Accessible via web, Windows or API this platform will aid in the data management of plants, animals, samples and the processing of DNA maintaining audits and a chain of custody that is in line with regulatory standards.

132 Promega Corporation 212 Madison, WI www.promega.com As a world leader in applying genomics and cellular biology expertise to develop high value products for the Life Sciences, Promega Corporation understands that today's Genomic's challenges require creative solutions. Stop by our booth to learn more about successful approaches and tools for enabling your genomics research.

Qubit Systems 424 Kingston,, Ontario, Canada www.qubitphenomics.com/ Qubit Systems specializes in high throughput screening systems for plant phenotyping. Our PlantScreenTM systems combine imaging stations for chlorophyll fluorescence kinetics, thermal, NIR, hyperspectral, RGB and morphometric analysis. Automated watering, weighing and nutrient delivery are optional. We offer conveyor systems, robotic XYZ systems fitted to your growth cabinets and green houses or field screening systems customized to your application. We also design intelligent growth cabinets and greenhouses for large and small scale cultivation. Visit our website or email us at [email protected] for a free consultation.

RainDance Technologies 430 Billerica, Massachusetts www.RainDanceTech.com RainDance Technologies is making complex genetics simple. The company’s ultra-sensitive genomic tools enable better research of novel non-invasive Fluid Biopsy™ applications that should result in more accurate, reliable, cost-effective and early detection of cancer, inherited and infectious diseases. Major research institutions and laboratories around the world rely on RainDance systems’ performance. Based in Billerica, Massachusetts, the company supports customers using RainDrop® Digital PCR and ThunderStorm® Targeted Next-Generation Sequencing Systems through its international sales and service operations as well as a global network of distributors and commercial service providers.

RAPiD Genomics, LLC 116 Gainesville, FL www.rapid-genomics.com RAPiD Genomics is a DNA genotyping & genetic data analysis company. We deliver tools for breeders & researchers to characterize genetic variation at high throughput and low cost.

We require low amounts of DNA and no need of expensive proprietary equipment. We also support our clients by applying proprietary methods of genetic data analysis to predict the value of a plant or animal solely based on their genetic composition. Thus, we offer the full suite of tools and analytical methods to characterize genetic variation and/or breeding.

133 Roche Diagnostics Corporation 219 Indianapolis, IN www.nimblegen.com Roche Sequencing as a unit of Roche Diagnostics, is an innovator in the life sciences market and a pioneer in Next Gen Sequencing. In addition to 454 Life Sciences NGS products, Roche develops, markets and sells SeqCap target enrichment probe pools for studies of genomic DNA, RNA and methylation.

Sage Science Inc. 228 Beverly, MA www.sagescience.com Sage Science develops products for sample preparation in life science research. Featuring the Pippin PrepTM and BluePippinTM DNA size selection systems, Sage’s platform automates preparative agarose gel electrophoresis, providing an alternative to manual gel purification. The Pippin systems collect DNA fragment size ranges, in buffer, according to user-input values.

SGI-DNA 532 San Diego, CA www.sgidna.com SGI-DNA, a division of Synthetic Genomics, Inc (SGI), was founded in 2013 and is headquartered in La Jolla, CA. Building on the scientific advancements and breakthroughs from leading scientists such as J. Craig Venter, Hamilton Smith, Clyde Hutchison, and Dan

Gibson, SGI-DNA provides powerful and versatile tools for DNA design and assembly. Achieve new possibilities in your molecular biology workflow with our reagents, instruments, services and software. We are committed to reducing barriers associated with synthetic biology by leveraging the technology developed at the J. Craig Venter Institute and Synthetic Genomics, Inc

Source BioScience 526 Nottingham, Please Select, United Kingdom www.sourcebioscience.com Source BioScience are leaders in conventional and next generation sequencing, gene expression and genotyping services and offer a comprehensive portfolio of pre-made clones and antibodies. We also provide controlled environment testing for pharmaceutical stability storage at all World Climatic ICH conditions. We are CPA and GxP accredited.

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137 Abstracts Table of Contents

Category Page #

Workshop Abstracts: Abiotic Stress 144 Allele Mining 144 Analysis of Complex Genomes 145 Animal Epigenetics 145 Animal Genetics 145 Applied Tritceae Genomics 146 Aquaculture 1 146 Arabidopsis Information Protocol 147 Arthropod Genomics 148 Banana Genomics 148 Bioenergy Grass Genomics 148 Bioenergy -Towards Increasing Oil in Nonseed Biomass 149 Bioinformatics 149 Brachypodium Genomics 150 Brassicas 150 Buffalo 151 Cacao Genome Sequencing 151 Cassava Genomics 152 Cat & Dog 153 Cattle/Sheep/Goat 153 Cattle/Swine 155 Citrus 156 Climate Change and ICRCGC 156 Coffee Genomics 157 Comparative Genomics 157 Components of Apomixis 158 Compositae 158 Computational Gene Discovery 159 Cool Season Legumes 159 Cotton Genome Initiative 160 CSSA: Translational Genomics 160 Cucurbit 160 Cultivating Broader Impact Programs 161 Degraded DNA and Paleogenomics 161 Development of Application of Transgenic Tech in Ag 162 DNA Subway 162 Domestication Genomics 162 Ecological Genomics 162 Engineering NUE 163 Equine 1 & 2 163 Evolution of Genome Size 164 Exploring Phytobiomes 164 Flax Genomics 164 Forage, Feedstock’s & Turf 165 Forest Trees 165 138 Abstracts Table of Contents

Workshop Abstracts (continued): Fruit/Nuts 167 Functional Genomics 168 Fungal Genomics 168 Gene Expression Analysis 169 Gene Introgression 170 Genome annotation resources at the EBI 170 Genome management and analysis with CoGe 171 Genomic Selection and Genome Wide Assoc. Studies 171 Genomics of Genebanks 171 Genomics-Assisted Breeding 171 Genomics of Non-Classical Model Animals 172 Genomics of Plant Development 172 GMOD 172 Gramene Project 173 Grape Genome Initiative 173 Grass Genome Initiative 174 Grasslands (Lolium Genome Initiative) 174 Host-Microbe Interaction 174 Intl Goat Genome Consortium 175 Intl Rice Informatics Consortium 175 Intl Sheep Genome Consortium 176 Intl Wheat Genome Sequencing Consortium (IWGSC) 176 Intl Phytomedomics and Nutriomics Consortium (ICPN) 177 iPlant Collaborative 177 IWGSC – Standards and Protocols 177 Legumes 179 Maize 179 Managing Crop Phenotype Data 179 Mutation Screening 180 NCBI Genome Resources, Tools and Annotation 180 New Approaches for Dev. Disease Resistance in Cereals 180 Next Generation Genome Annotation and Analysis 180 Non-Seed Plants 181 NSRP-8 Animal Genome 181 Oats 181 Organellar Genetics 182 Ornamentals 182 Palm Genomics & Genetics 183 Perennial Grasses 184 Pine Genome Reference Sequence 184 Plant and Animal Paleogenomics 184 Plant Chromosome Biology 185 Plant Cytogenetics 185 Plant Dormancy 186 Plant Genomics Engineering 186 Plant Interactions with Pests and Pathogens 186

139 Abstracts Table of Contents

Workshop Abstracts (continued): Plant Phenotypes 187 Plant Reproductive Genomics 187 Plant Transgene Genetics 188 Polyploidy 188 Population & Conservation Genomics 189 Poultry 189 Proteomics 191 QTL Cloning 191 Recombination - mechanisms 192 Resources for Undergraduate Education in Genomics 192 Rice Functional Genomics 193 Root Genomics 193 Sequencing Complex Genomes 193 Sex Chromosomes 194 SGN – Solanaceae Genomes, Tools Toolbox 194 Small RNA 194 Solanaceae 195 Somatic Genome 195 Sorghum and Millet 195 Soybean Genomics 196 Genomics of Tissue Regeneration in Plants & Animals 196 Speciation Genomics 199 Statistical Genomics 199 Sugar Beet 199 Sugar Cane (ICSB) 200 Sugar Cane Sequencing Initiative 200 Swine 201 Synthetic Biology 201 Synthetic Biology and Ontologies 202 Systems Genomics 202 The National Plant Genome Initiative: 203 Transposable Elements 203 Tripal Database Network and Initiatives 204 Triticeae 1 & 2 204 UCSC Genome Browser 205 Weedy and Invasive Plant Genomics 206 What Bottlenecks in High-throughput Phenotype Research 206

Poster Abstracts: Bioenergy 207 Genome Technology: Sequencing 208 High-throughput Methods 209 Large Insert Libraries 211 Other Genome Methodology 212

140 Abstracts Table of Contents

Poster Abstracts (continued): Genome Mapping, Tagging & Characterization: Rice 213 Maize, Sorghum, Millet, Sugar Cane, and related 215 Wheat, Barley, Oat and Related 220 Legumes, Soybeans, Common Beans 230 Brassicas, Arabidopsis 239 Tomato, Potato, Pepper 243 Fruit Species 246 Sunflower/Oilseeds 252 Cotton 252 Forest Trees 253 Aquaculture 256 Cattle 258 Equine 263 Swine 265 Sheep 268 Canine & Feline 269 Poultry 269 Insects 272 General Comparative 272 Natural Populations 274 Microbes & Pathogens 294 Marker Systems Diversity: SSR 276 SNP 276 Genes and Pathways (Gene Expression, Proteomics): Cellular Processes and Regulatory Networks 277 Functional Analysis 281 Microarrays 286 Transformation 286 Bioinformatics: Databases 287 Software 290 Algorithms 292 Other / Other Species 294

Computer Demo Abstracts 302

Author Index 305

141 W001: Abiotic Stress W004: Abiotic Stress Opening Remarks Gene Expression and Protein-Protein Interaction Analysis for Understanding Drought Tolerance Mechanism in Chickpea (Cicer Henry T Nguyen, University of Missouri, Columbia, MO arietinum L) Himabindu Kudapa, Abirami Ramalingam and Rajeev K Varshney, W002: Abiotic Stress ICRISAT, Hyderabad, India Phosphorus-Starvation Tolerance 1 Enhances Phosphorus Acquisition and Sorghum Performance on Low-Phosphorus Soils W005: Abiotic Stress Jurandir Magalhaes1, Barbara Hufnagel2, Sylvia M Souza1, Lidianne Assis3, Direct Signaling Crosstalk Between Brassinosteroid and Abscisic Acid Claudia Guimaraes1, Willmar Leisser4, Gabriel C Azevedo1, Barbara Negri1, Regulates Root Growth Maintenance during Water Deficits in Soybean Brandon Larson5, Jon Shaff6, Maria Marta Pastina1, Beatriz Barros1, Eva Weltzien-Rattunde7, Fred Rattunde7, João Herbert Viana1, Randy Clark8, Li Lin, University of Missouri, Columbia, MO Alexandre Falcão9, Rodrigo Gazaffi10, Antonio Augusto F Garcia10, Robert 1 6 Schaffert and Leon Kochian , (1)Embrapa Maize and Sorghum, Sete Lagoas, W006: Abiotic Stress Brazil, (2)USDA-ARS/Embrapa Maize and Sorghum, Ithaca, NY, (3)Universidade Federal do Acre, Rio Branco, Brazil, (4)University of Role of MicroRNAs in Plant Abiotic Stress Responses Hohenheim, Stuttgart, Germany, (5)USDA-ARS, Ithaca, NY, (6)Robert W Ramanjulu Sunkar, Oklahoma State University, Stillwater, OK Holley Center, USDA-ARS & Cornell University, Ithaca, NY, (7)ICRISAT, Bamako, Mali, (8)Cornell University, Ithaca, NY, (9)University of Campinas, Campinas, Brazil, (10)ESALQ-USP, Piracicaba, Brazil W007: Abiotic Stress Accessing Multi-Tiered and Cell-Specific Regulation of Responses to W003: Abiotic Stress Abiotic Stress in Crops Function and Diversity of GmACP1, an Important Factor Modulating Germain C Pauluzzi, University of California, Riverside, Riverside, CA Soybean Tolerance to Low-P Stress

Deyue Yu, Nanjing Agricultural University, Nanjing, China

W008: Allele Mining W011: Allele Mining Dissection of Genotypic and Phenotypic Variation in Shrub Willow (Salix Association Studies Unravel a Link Between Yield Components and purpurea) Disease Resistance of Rice Fred E Gouker1, Ran Zhou2, Luke Evans2, Eli Rodgers-Melnick3, Stephen Xueyan Wang, University of Arkansas Rice Research and Extension Center, DiFazio2 and Lawrence Smart1, (1)Cornell University, Geneva, NY, (2)West Stuttgart, AR, Melissa Jia, DB NRRC, Stuttgart, AR, Pooja Ghai, Arkansas Virginia University, Morgantown, WV, (3)Cornell University, Ithaca, NY state university, Jonesboro, AR, Fleet N Lee, Rice Research and Extension Center, Stuttgart, AR and Yulin Jia, USDA-ARS, Stuttgart, AR W009: Allele Mining A First Generation Hapmap of Chickpea for Mining Superior Alleles for W012: Allele Mining Crop Improvement HetMappS: Heterozygous Mapping Strategy for High Resolution Genotyping-by-Sequencing Markers Anu Chitikineni1, Weiming He2, Pooran M Gaur1, Jainbo Jian2, Dadakhalandar Doddamani1, Manish Roorkiwal1, Abhishek Rathore1, Narendra Katie Hyma1, Paola Barba2, Minghui Wang3, Jason Londo4, Matthew P Hare5, P Singh3, Sushil Chaturvedi4, Swapan K Datta5, Gengyun Zhang2, Jun Wang2 Charlotte Acharya3, Sharon E Mitchell3, Qi Sun6, Bruce Reisch7 and Lance and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)Beijing Genomics Cadle-Davidson4, (1)Genomic Diversity Facility, Cornell University, Ithaca, Institute (BGI), Shenzhen, China, (3)All India Coordinated Research Project on NY, (2)Plant Breeding and Genetics Section, School of Integrative Plant Chickpea (AICRP), ICAR, Kanpur, India, (4)Indian Institute of Pulses Science, Cornell University, Ithaca, NY, (3)Cornell University, Ithaca, NY, Research, Kanpur, India, (5)Indian Council of Agricultural Research (ICAR), (4)USDA-ARS Grape Genetics Research Unit, Geneva, NY, (5)Department of New Delhi, India Natural Resources, Ithaca, NY, (6)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (7)Cornell University, Geneva, NY W010: Allele Mining The Secrets of Cold Tolerance at the Seedling Stage and Heading in Rice W013: Allele Mining As Revealed By Association Mapping Random Tagging GBS in Kiwifruit Georgia C Eizenga1, Ehsan Shakiba2, Farman Jodari3, Sara Duke4, Pavel Elena Hilario1, Lorna Barron1, Cecilia H Deng1, Paul Datson1, Nihal De Silva1 Korniviel5, Aaron Jackson1, Jason Mezey5 and Susan McCouch5, (1)USDA- and Marcus Davy2, (1)The New Zealand Institute for Plant & Food Research ARS Dale Bumpers National Rice Research Center, Stuttgart, AR, Limited, Auckland, New Zealand, (2)The New Zealand Institute for Plant & (2)University of Arkansas, Stuttgart, AR, (3)California Cooperative Rice Food Research Limited, Te Puke, New Zealand Research Foundation, Biggs, CA, (4)USDA-ARS, College Station, TX, (5)Cornell University, Ithaca, NY

142 W014: Analysis of Complex Genomes W017: Analysis of Complex Genomes BioNano Genome Map of a Wheat Chromosome Arm: A Tool to Support Fungal Artificial Chromosome (FAC): A Novel Technology to Translate Sequence Assembly in a Complex Genome the Whole Genome Sequence Information into the Secondary Metabolome in Filamentous Fungi Hana Simkova1, Alex Hastie2, Helena Stankova1, Jan Vrana1, Marie Kubaláková1, Paul Visendi3, Satomi Hayashi4, Ming-Cheng Luo5, Jacqueline Cheng-Cang Charles Wu, Intact Genomics, Inc, St Louis, MO 6 4 1 Batley , David Edwards and Jaroslav Dolezel , (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)BioNano Genomics, San Diego, CA, (3)Australian Centre for Plant Functional Genomics, Brisbane, Australia, W018: Analysis of Complex Genomes (4)University of Queensland, Brisbane, Australia, (5)University of California, Assessing and Validating the Amphidiploid Genome of Brassica napus Davis, CA, (6)University of Queensland, St Lucia, Australia using Genotyping by Sequencing

Philipp Emanuel Bayer, University of Queensland, Brisbane, Australia W015: Analysis of Complex Genomes The Challenges of Genomics in Polyploid Spartina Species: How to Deal W019: Analysis of Complex Genomes with Hybrid Genomes and High Redundancy? A Whole Genome Sorting-Whole Genome Shotgun (WGS2) Approach for Armel Salmon, Julien Boutte, Julie Ferreira de Carvalho, Mathieu Rousseau- Sequencing the Allotetraploid Durum Wheat Genome Gueutin and Malika Lily Ainouche, University of Rennes 1 - UMR CNRS 1 1 1 1 6553, Rennes, France Alessia Fiore , Debora Giorgi , Patrizia Pallara , Marco Pietrella , Anna Farina1, Elio Schijlen2, Sergio Lucretti1, Giovanni Giuliano1, Gabino F Sanchez 2 3 Perez and Stephane Rombauts , (1)ENEA - Italian Agency for New W016: Analysis of Complex Genomes Technologies, Rome, Italy, (2)Plant Research International, Wageningen The Molecular Mechanisms of Plant Polyploidization Revealed By Systems University, Wageningen, Netherlands, (3)VIB Department of Plant Systems Analysis of the Genomes and Transcriptomes of Wheat, Cotton and Biology, Ghent University, Ghent, Belgium Related Species Yang Zhang1, Yun-Hua Liu1, Meiping Zhang1, Qijun Zhang2, Steven S Xu3, W020: Animal Epigenetics Wayne Smith1, Steve Hague1, James Frelichowski4 and Hong-Bin Zhang1, Integrating DNA Methylation with other 'Omics Data Sets for Prediction (1)Texas A&M University, College Station, TX, (2)North Dakota State of Meat Tenderness in Sheep University, Fargo, ND, (3)USDA-ARS, Fargo, ND, (4)USDA-ARS, College 1 1 1 2 Station, TX Christine Couldrey , Daisy Shepherd , Paul Maclean , Shannon Clarke , John McEwan2, Rudiger Brauning2 and Vanessa Cave1, (1)AgResearch Ltd Ruakura,

Hamilton, New Zealand, (2)AgResearch Ltd Invermay Agricultural Centre, Dunedin, New Zealand

W021: Animal Epigenetics W025: Animal Genomics and Adaptation to Climate Change Non-Invasive Biomarkers of Embryo Development in Cattle Alterations in Body Composition and Transcriptional Profile as a Result of Prenatal Heat Stress Exposure in Pigs Jenna Kropp, University of Wisconsin, Madison, WI 1 2 2 1 Rebecca L Boddicker , James E Koltes , Eric Fritz-Waters , Jacob T Seibert , James M Reecy2, Dan Nettleton1, Matthew C Lucy3, Timothy J Safranski3, W022: Animal Epigenetics Joshua T Selsby1, Robert P Rhoads4, Nicholas K Gabler1, Lance H Baumgard1 Paternal Epigenetic Mechanisms Regulate Male Fertility and Early and Jason W Ross1, (1)Iowa State University, Ames, IA, (2)Department of Development in Mammals Animal Science, Iowa State University, Ames, IA, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)Virginia Tech University, Erdogan Memili, Mississippi State University, Mississippi State, MS Blacksburg, VA

W023: Animal Epigenetics W026: Animal Genomics and Adaptation to Climate Change Genetic Architecture and Evolution of Complex Traits Genome-Wide SNP Scans Reveal Multiple Signatures of Selection in Egyptian Barki Sheep and Goats Raised in Hot Arid Environments Mike E Goddard, Biosciences Research Division, DPI, Melbourne, Australia 1 2 3 Joram Mwacharo , Ahmed R Elbeltagy , Eui-Soo Kim , Barbara Rischkowsky4, Adel M Aboul-Naga2, Brian Sayre5 and Max F Rothschild3, W024: Animal Epigenetics (1)Small Ruminant Genetics and Genomics Group, The International Center for Dynamic Chromatin Modifications and Tissue-Specific Marks of Mdv Agricultural Research in Dry Areas (ICARDA), Addis Ababa, Ethiopia, Infection in Inbred Chicken Lines (2)Animal Production Research Institute, Cairo, Egypt, (3)Iowa State University, Ames, IA, (4)Intern Center for Agric Res in the Dry Areas, Jiuzhou Song, University of Maryland, College Park, MD ICARDA, Addis Ababa, Ethiopia, (5)Virginia State University, Petersburg, VA

W027: Animal Genomics and Adaptation to Climate Change Sensitivity to Temperature Variation in Beef Cattle: Opportunities and Challenges for Selection Matt L Spangler, University of Nebraska-Lincoln, Lincoln, NE

143 W028: Animal Genomics and Adaptation to Climate Change W032: Applied Triticeae Genomics Genomics of Heat Stress in Poultry Sequence-Based Map Development of Wheat NAM Populations

Susan J Lamont1, Angelica Bjorkquist1, Derrick J Coble1, Max F Rothschild1, Katherine Jordan1, Shichen Wang1, Yanni Lun1, Shiaoman Chao2, Jorge Michael E Persia2, Chris Ashwell3 and Carl J Schmidt4, (1)Iowa State Dubcovsky3, Jamie Sherman4, Alina Akhunova1, Luther Talbert4 and Eduard University, Ames, IA, (2)Virginia Tech, Blacksburg, VA, (3)North Carolina Akhunov1, (1)Kansas State University, Manhattan, KS, (2)USDA-ARS, Fargo, State University, Raleigh, NC, (4)University of Delaware, Newark, DE ND, (3)University of California Davis, Davis, CA, (4)Montana State University, Bozeman, MT W029: Applied Triticeae Genomics Progress in Wheat Structural Genomics W033: Applied Triticeae Genomics Tilling for Disease Resistance Genes Jarrod Chapman, DOE Joint Genome Institute, Walnut Creek, CA 1 1 1 1 Ksenia Krasileva , Joshua M Hegarty , Francine Paraiso , Xiaodong Wang , Hans Vasquez-Gross2, Paul C Bailey3, Sarah Ayling3, Cristobal Uauy4 and W030: Applied Triticeae Genomics Jorge Dubcovsky1, (1)University of California Davis, Davis, CA, Comparative Analysis of Gene Expression Regulation Among Diploid and (2)Department of Plant Sciences, University of California, Davis, Davis, CA, Polyploid Wheat Genomes (3)The Genome Analysis Centre, Norwich, United Kingdom, (4)John Innes Centre, Norwich, England Matthias Pfeifer1, Fu-Hao Lu2, Michael Bevan2 and Klaus FX Mayer1,

(1)Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany, (2)John Innes Centre, Norwich, United Kingdom W034: Applied Triticeae Genomics Battling Stem Rust with Cloned Resistance Genes: NB-LRRs in the Haystack W031: Applied Triticeae Genomics Epigenomic Maps of Bread Wheat Chromosome 3B Brande Wulff, John Innes Centre, Norwich, United Kingdom

Aurelie Evrard, Frederic Choulet and Etienne Paux, INRA GDEC, Clermont- Ferrand, France W035: Applied Triticeae Genomics An Integrated Genomic Approach Towards Cloning the Stem Solidness Gene Sst1 in Wheat

Kirby Nilsen and Curtis J Pozniak, University of Saskatchewan, Saskatoon, SK, Canada

W036: Aquaculture W041: Aquaculture A Genome Sequence Assembly for Channel Catfish, Ictalurus punctatus Can Epigenetic Regulation of Sex Ratios Explain Natural Variation in Self-Fertilization Rates? Geoff Waldbieser, USDA - Agricultural Research Service, Stoneville, MS 1 2 3 4 Carlos M Rodriguez Lopez , Amy Ellison , Paloma Moran , Martin Swain , Manuel Megias3, Matthew Hegarty5, James M Breen1, Michael J Wilkinson1 W037: Aquaculture and Sofia Consuegra6, (1)University of Adelaide, Adelaide, Australia, Yeast Two-Hybridization Analyses of Atlantic Salmon sdY Interactions (2)Cornell University, Ithaca, NY, (3)Universidad de Vigo, Vigo, Spain, (4)Aberystwyth University, Aberystwyth, United Kingdom, (5)IBERS, Agnieszka Stadnik, Simon Fraser University, Burnaby, BC, Canada Aberystwyth University, Aberystwyth, United Kingdom, (6)Swansea University, Swansea, United Kingdom W038: Aquaculture De Novo Genome Assembly of the South American Freshwater Fish W042: Aquaculture Tambaqui (Colossoma macropomum) The Application of Genomic Selection in Aquaculture Alexandre R Caetano, Embrapa Recursos Genéticos e Biotecnologia, Brasilia, Theodorus M Meuwissen, Norwegian University of Life Sciences, Oslo, DF, Brazil Norway

W039: Aquaculture W043: Aquaculture Allele-Specific Expression in Interspecific Catfish Hybrids New Insights in the Differences Between Triploid and Diploid Fujian Oyster By Integrated Gene Expression Profiling and Proteomic Analyses Ailu Chen, The Fish Molecular Genetics and Biotechnology Laboratory, Auburn, AL Weiwei You, Xiamen University, Xiamen, China

W040: Aquaculture W044: Aquaculture Tissue and Disease Specific Expression of miRNA Genes in Atlantic Detection of Genes and microRNA Involved in Sex Determination in Nile Salmon (Salmo salar) Tilapia (Oreochromis niloticus) Rune Andreassen, Oslo and Akershus University College of Applied Orly Eshel, Volcani Research Center, Bet-Dagan, Israel Sciences, Oslo, Norway

144 W045: Aquaculture W049: Aquaculture Contrasting Patterns of Neutral and Adaptive Genetic Variation of Accuracy of Genomic Prediction for BCWD Resistance in Rainbow trout Chilean Blue Mussel (Mytilus chilensis) Due to Local Adaptation and Using 24K RAD-SNP and 49K SNP and Bayes B/C and Single-Step Aquaculture GBLUP Methods Cristian Araneda, Universidad de Chile, Depto de Produccion Animal, Roger L Vallejo, USDA-ARS-NCCCWA, Kearneysville, WV Santiago, Chile W050: Aquaculture W046: Aquaculture Selective Breeding in Commercial North American Rainbow Trout Application of Genomics to Selective Breeding of Atlantic Salmon Populations Ross D Houston, The Roslin Institute and R(D)SVS, University of Edinburgh, Jim Parsons, Troutlodge, Inc, Sumner, WA Edinburgh, United Kingdom W051: Aquaculture W047: Aquaculture Stepping Toward Sustainable Aquaculture: Genomic Resource RNA-Seq Identifies SNPs Associated with Muscle Yield and Quality in Development to Help Guide Broodstock Selection and Culture Practices Rainbow Trout for the California Yellowtail, Seriola lalandi Bam D Paneru, Middle Tennessee State University, Murfreesboro, TN Catherine Purcell, Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, CA W048: Aquaculture GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of W052: Aquaculture Related Genes within Major QTLs for Columnaris Disease Resistance Identification of Mitochondrial microRNAs Related to Egg Deterioration Caused By Post-Ovulatory Aging in Rainbow Trout Xin Geng, Auburn University, Auburn, AL Hao Ma, West Virginia University, Morgantown, WV

W053: Aquaculture W058: Arabidopsis Information Portal & Intl Arabidopsis Informatics The Development and Characterization of a 57K SNP Chip for Rainbow Consortium Trout Cross-Species Network Analysis Using VirtualPlant Yniv Palti, USDA-ARS-NCCCWA, Kearneysville, WV Manpreet S Katari1, Kranthi K Varala1, Stuti Srivastava1, Sam Goldman1, 1 2 1 1 Akshay Jain , Rodrigo A Gutiérrez , Dennis Shasha and Gloria Coruzzi , (1)New York University, New York, NY, (2)Pontificia Universidad Católica de W054: Aquaculture Chile, Santiago, Chile NRSP-8 Bioinformatics Coordinator James M Reecy, Department of Animal Science, Iowa State University, Ames, W059: Arabidopsis Information Portal & Intl Arabidopsis Informatics IA Consortium A Walk through the Araport Web Site W055: Aquaculture Chia-Yi Cheng, J Craig Venter Institute, Rockville, MD Business Meeting John Liu, Auburn University, Auburn, AL and Caird E Rexroad, III, USDA- W060: Arabidopsis Information Portal & Intl Arabidopsis Informatics ARS-NCCCWA, Kearneysville, WV Consortium App Development within the MapMap Project W056: Arabidopsis Information Portal & Intl Arabidopsis Informatics Marie Bolger, RWTH Aachen University, Aachen, Germany Consortium

TAIR as a Model for Database Sustainability W061: Arabidopsis Information Portal & Intl Arabidopsis Informatics Eva Huala1, Donghui Li1, Tanya Z Berardini1,2 and Robert Muller1, (1)Phoenix Consortium Bioinformatics, Redwood City, CA, (2)Phoenix Bioinformatics, Stanford, CA Exposing Web Services for the Arabidopsis Information Portal

Jason R Miller, J Craig Venter Institute, Rockville, MD W057: Arabidopsis Information Portal & Intl Arabidopsis Informatics Consortium What's New at NASC? Sean Tobias May, University of Nottingham, Loughborough, United Kingdom

145 W062: Arabidopsis Information Portal & Intl Arabidopsis Informatics W067: Arthropod Genomics Consortium The i5k Perspective Developing Applications for the Arabidopsis Information Portal Susan Brown, Kansas State University, KSU Bioinformatics Center, Matt Vaughn, Texas Advanced Computing Center, Austin, TX Manhattan, KS

W063: Arthropod Genomics W068: Arthropod Genomics Bacterial Pathogen Genomics: Liberibacters from Around the World Progress on the I5K Pilot at the Baylor College of Medicine Human Genome Sequencing Center Kent F McCue, USDA Agricultural Research Service, Albany, CA, Gerard R Lazo, USDA Agricultural Research Service, WRRC, Albany, CA and Joseph E Kim C Worley, Stephen Richards, Daniel S T Hughes, Shwetha C Murali, Munyaneza, USDA Agricultural Research Service, Wapato, WA Shannon Dugan, Donna M Muzny and Richard A Gibbs, Baylor College of Medicine, Houston, TX W064: Arthropod Genomics Psyllid RNAi W069: Banana Genomics Banana Genome Contributes to Understand Grass Chromosome Number Wayne Hunter, USDA Agricultural Research Service, Fort Pierce, FL and Reduction and Genome Repatterning Mechanism Blake Bextine, University of Texas-Tyler, Tyler, TX Xiyin Wang, Plant Genome Mapping Laboratory, University of Georgia, Athens, GA W065: Arthropod Genomics

Regulation of Viral Infections for Insect Pest Managment W070: Banana Genomics Blake Bextine, University of Texas-Tyler, Tyler, TX, Wayne Hunter, USDA Towards a Better Genome Annotation of Different Musa Cultivars Using Agricultural Research Service, Fort Pierce, FL and Patrick Rydzak, University mRNA Seq and Proteomics Data: The Search for Allelic Variants Related of Texas at Tyler, Tyler, TX to Drought

Sebastien C Carpentier1, Jassmine Zorilla1, Ewaut Kissel1, Mathieu Rouard2, W066: Arthropod Genomics Alberto Cenci3, Nicolas Roux2 and Rony Swennen1, (1)KULeuven, Leuven, The Phytobiome Initiative Belgium, (2)Bioversity International, Montpellier, France, (3)Bioversity International, Commodity Systems & Genetic, F-34397 Montpellier, France Jan E Leach, Colorado State University, Fort Collins, CO

W071: Banana Genomics W075: Bioenergy Grass Genomics Transposable Elements and Their Evolution in Musa Update on Assembly and Functionality of the Miscanthus Genome Sequence Pat Heslop-Harrison1, Gerhard Menzel2, Tony Heitkam2, Faisal Nouroz3, Trude Schwarzacher3 and Thomas Schmidt4, (1)University of Leicester, Stephen P Moose, University of Illinois Urbana-Champaign, Urbana, IL Leicester, Leic, United Kingdom, (2)Institute of Botany, Technische Universität Dresden, Dresden, Germany, (3)University of Leicester, Leicester, United Kingdom, (4)Dresden University of Technology, Dresden, Germany W076: Bioenergy Grass Genomics Constructing a Comprehensive Picture of the Miscanthus Cell Wall to Advance Its Deconstruction W072: Banana Genomics Ricardo da Costa1, Sivakumar Pattathil2, Utku Avci2, Scott J Lee3, Gordon G The African Orphan Crops Consortium, an Uncommon Collaboration to 1 3 1 2 Develop Plantain and Banana Allison , Samuel P Hazen , Ana Winters , Michael G Hahn and Maurice Bosch1, (1)Aberystwyth University, Aberystwyth, United Kingdom, (2)CCRC Allen Van Deynze, Seed Biotechnology Center, University of California, - University of Georgia, Athens, GA, (3)Biology Department, University of Davis, CA Massachusetts, Amherst, MA

W073: Banana Genomics W077: Bioenergy Grass Genomics Field Trial of Xanthomonas Wilt Disease-Resistant GM Bananas in East The carbohydrate metabolic profile can be used as a biomarker of Africa productivity in Miscanthus Andrew Kiggundu1, Leena Tripahti2, Jaindra Tripathi2, Wilberforce Sarah Purdy, Aberystwyth University, Aberystwyth, United Kingdom 3 4 5 Tushemereirwe , Sam Korie and Frank Shotkoski , (1)National Agricultural Research Laboratories (NARL), Kampala, Uganda, (2)International Institute of Tropical Agriculture, Kampala, Uganda, (3)National Agriculture Research Laboratories, Kampala, Uganda, (4)International Institute of Tropical Agriculture, Ibadan, Nigeria, (5)Cornell University, Ithaca, NY

W074: Banana Genomics Updates on the Musa acuminata Reference Genome Sequence Angélique D'hont, CIRAD, UMR AGAP, Montpellier, France and Mathieu Rouard, Bioversity International, Montpellier, France

146 W078: Bioenergy Grass Genomics W082: Bioenergy - Towards Increasing Oil in Nonseed Biomass Genomics and Genetics of Switchgrass Cell Wall Quality Comparative Transcriptomics Identifies Key Steps in Storage Oil Biosynthesis in Plant Tissues Laura Bartley1, Kangmei Zhao1, Chengcheng Zhang2, Sandra Thibivilliers1, Aruna Nandety2, Ananta Achayra3, Desalegn Serba4, Xuesong Li5, E Charles Aruna Kilaru, East Tennessee State University, Johnson City, TN and John Brummer6, Nicholas Santoro7, Malay C Saha8 and Lan Zhu5, (1)University of Ohlrogge, Michigan State University, East Lansing, MI Oklahoma, Norman, OK, (2)Univestiy of Oklahoma, Norman, OK, (3)University of Georgia, Athens, GA, (4)Noble Foundation, Ardmore, OK, (5)Oklahoma State University, Stillwater, OK, (6)University of California, W083: Bioenergy - Towards Increasing Oil in Nonseed Biomass Davis, Davis, CA, (7)DOE GLBRC,Michigan State University, East Lansing, Ectopic Expression of WRI1 Affects Fatty Acid Homeostasis in MI, (8)The Samuel Roberts Noble Foundation, Ardmore, OK Brachypodium distachyon Vegetative Tissues

1 2 2 2 Yang Yang , Jack Munz , Cynthia L Cass , John C Sedbrook and Christoph W079: Bioenergy Grass Genomics Benning1, (1)Michigan State University, GLBRC, East Lansing, MI, (2)Illinois Functional Genomics of Sugar Content in Sweet Sorghum Stems State University and GLBRC, Normal, IL

David M Braun, University of Missouri, Columbia, MO W084: Bioenergy - Towards Increasing Oil in Nonseed Biomass

Towards the Development of Sustainable Feedstocks for Renewable W080: Bioenergy Grass Genomics Biobased Products: The Case for Sugarcane and Sweet Sorghum Comparative Genomics of Bioenergy Grasses Thomas E Clemente1, Fredy Altpeter2, Stephen Long3, John Shanklin4, Aleel Daniel S Rokhsar, DOE Joint Genome Institute, Walnut Creek, CA Grennan3, Don Ort3 and Stephen P Moose5, (1)University of Nebraska, Lincoln, NE, (2)University of Florida - IFAS, Gainesville, FL, (3)University of Illinois, Urbana-Champaign, Urbana, IL, (4)Brookhaven National Lab, Upton, W081: Bioenergy - Towards Increasing Oil in Nonseed Biomass NY, (5)University of Illinois Urbana-Champaign, Urbana, IL Construction of an Indexed Mutant Library to Enable Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii W085: Bioenergy - Towards Increasing Oil in Nonseed Biomass Xiaobo Li, Carnegie Institution for Science, Stanford, CA Vegetative Production of Oil Targeted for High Biomass Crops

Jos van Boxtel1, Changquan Wang2, Gia Fazio1, Quyen Lam1, Cade Guthrie2, Derrick Hicks2, Cassie Hilder1, Vic Knauf1 and Katayoon Dehesh2, (1)Arcadia Biosciences, Davis, CA, (2)UC Davis, Davis, CA

W086: Bioenergy - Towards Increasing Oil in Nonseed Biomass W089: Bioinformatics Metabolic Engineering for Increasing Oil in Vegetative Plant Tissues Efficient Assembly of Large Genomes Using Single-Molecule Sequencing and Locality Sensitive Hashing Olga Yurchenko1, Jay Shockey2, Sunjung Park1, Satinder Gidda3, Kent Chapman4, Robert Mullen3 and John Dyer1, (1)US Arid-Land Agricultural Konstantin Berlin1, Sergey Koren2, Jason Chin3, James Drake3, Jane Landolin3 Research Center, Maricopa, AZ, (2)USDA-ARS, Southern Regional Research and Adam M Phillippy2, (1)University of Maryland, College Park, MD, Center, New Orleans, LA, (3)Department of Molecular and Cellular Biology, (2)National Biodefense Analysis and Countermeasures Center, Frederick, MD, University of Guelph, Guelph, ON, Canada, (4)Department of Biological (3)Pacific Biosciences, Menlo Park, CA Sciences, University of North Texas, Denton, TX W090: Bioinformatics W087: Bioenergy - Towards Increasing Oil in Nonseed Biomass Rapid De Novo Assembly and Visualization of Plant and Animal Genomes Maximizing TAG Accumulation in Plant Leaves by Combinatorial Using Single-Library, PCR-Free, 250-Base Illumina Reads Metabolic Engineering Iain MacCallum, Neil Weisenfeld, Ted Sharpe, Bayo Lau, Carsten Russ, Thomas Vanhercke1, James Petrie2, Allan Green3 and Surinder Singh2, Jessica Alfoldi, Jeremy Johnson, Jason Turner-Maier, Broad Genomics (1)CSIRO Agriculture Flagship, Canberra, Australia, (2)CSIRO Agriculture Platform, Chad Nusbaum, Kerstin Lindblad-Toh and David B Jaffe, Broad Flagship, canberra, Australia, (3)CSIRO Food and Nutrition Flagship, Institute, Cambridge, MA Canberra, Australia W091: Bioinformatics W088: Bioinformatics What Gene Prediction in Transcriptomes, Metatranscrptomes, Perfect Long Read Assembly and the Rise of Pan-Genomics Metagenomes, and Microbial Genomes has in Common Michael Schatz1, James Gurtowski1, Sara Goodwin1, Scott Ethe-Sayers1, Mark Borodovsky, Georgia Institute of Technology, Atlanta, GA 1 1 1 2 Panchajanya Deshpande , Senem Eskipehlivan , Melissa Kramer , Hayan Lee , Eric Antoniou1 and W Richard McCombie1, (1)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (2)Stony Brook University, Stony Brook, NY W092: Bioinformatics The Stategra Initiative Develops Novel Methodologies for the Integrative Analysis of Multiple Types of NGS & Omics Data Ana Conesa, Centro de Investigación Príncipe Felipe, Valencia, Spain

147 W093: Bioinformatics W096: Brachypodium Genomics Nonparametric Methods for Prediction and Analysis of Promoters in High-Throughput Phenotyping of Brachypodium distachyon under Model Organisms Progressive Drought and Heat Stress Alyona Kryschenko, University of Southern California, Los Angeles, CA, Malia Gehan, Noah Fahlgren, Tracy Hummel, Stephanie Turnipseed and Todd Tatiana Tatarinova, university of southern california, Los Angeles, CA and Mockler, Donald Danforth Plant Science Center, St Louis, MO Martin Triska, Children's Hospital Los Angeles, Los Angeles, CA W097: Brachypodium Genomics W094: Brachypodium Genomics Examining Flowering Time in the Grasses: Population Structure and PMT, a Grass-Specific Acyltransferase Involved in Lignin Biosynthesis Genome-Wide Association Mapping in Brachypodium distachyon Deborah Petrik1, Steven D Karlen2, Cynthia L Cass3, Dharshana Ludmila Tyler1, Scott J Lee2, Nelson D Young2, Gregory A DeIulio1, Elena Padmakshan4, Fachuang Lu4, Sarah Liu4, Philippe Le Bris5, Sebastien Benavente3, Michael Reagon4, Jessica Sysopha2, Riccardo M Baldini5, Angelo Antelme6, Nicholas Santoro7, Curtis Wilkerson8, Richard Sibout6, Catherine Troìa6, Samuel P Hazen2 and Ana Caicedo2, (1)Biochemistry and Molecular Lapierre6, John Ralph9 and John C Sedbrook3, (1)Illinois State University and Biology Department, Amherst, MA, (2)Biology Department, University of DOE Great Lakes Bioenergy Research Center, Normal, IL, (2)GLBRC and Massachusetts, Amherst, MA, (3)Department of Biotechnology, ETSIA, University of Wisconsin, Madison, WI, (3)Illinois State University and Technical University of Madrid, Madrid, Spain, (4)Department of Biology, The GLBRC, Normal, IL, (4)University of Wisconsin, Madison, WI, (5)INRA, Ohio State University Lima, Lima, OH, (5)Department of Biology, University Versaille, France, (6)INRA-IJPB, Versailles, France, (7)DOE of Florence, Florence, Italy, (6)Dipartimento STEBICEF, Sezione di Botanica GLBRC,Michigan State University, East Lansing, MI, (8)Michigan State ed Ecologia vegetale, Università di Palermo, Palmero, Italy University, East Lansing, MI, (9)GLBRC, University of Wisconsin, Wisconsin Energy Institute, Madison, WI W098: Brachypodium Genomics

Efficient Evolution of Growth-Promoting Bacterial Rhizosphere W095: Brachypodium Genomics Communities through Plant-Microbiome Co-Propagation Arabidopsis Lost Its Sister: Why Brachypodium Is a Better Model to Study PIN-Mediated Auxin Transport in the Shoot Ulrich Mueller, University of Texas at Austin, Austin, TX

Devin O'Connor, Sainsbury Laboratory, Cambridge University, Cambridge, United Kingdom and Ottoline Leyser, Sainsbury Laboratory Cambridge University, Cambridge, United Kingdom

W099: Brachypodium Genomics W102: Brassicas The Brachypodium-Puccinia graminis System: Solving a Puzzle to Uncover Genomic-Assisted Marker Development of Brassica Crop for Agronomic the Underlying Mechanisms of Non-Host Resistance and Plant Immunity Improvement Melania Figueroa1, Sean Gordon2, Claudia Castell-Miller1, Feng Li1, Sergei Yong Pyo Lim, SuRyun Choi, Xiaonan Li, Vignesh Dhandapani and Wenxing Filichkin3, Matthew J Moscou4, John Vogel2, Todd C Mockler5, David F Pang, Chungnam National University, Daejeon, South Korea 6 7 Garvin and William F Pfender , (1)University of Minnesota, St Paul, MN, (2)DOE Joint Genome Institute, Walnut Creek, CA, (3)Oregon State University, Corvallis, OR, (4)The Sainsbury Laboratory, Norwich, United W103: Brassicas Kingdom, (5)Donald Danforth Plant Science Center, Saint Louis, MO, Development and Application of Genomic Resources in Brassica rapa (6)USDA-ARS, Plant Science Research Unit, St Paul, MN, (7)USDA-ARS, 1 1 1 Forage Seed and Cereal Research Unit, Corvallis, OR Upendra Kumar Devisetty , Michael F Covington , Cody Markelz , Saradadevi Lekkala1, Marcus T Brock2, Cynthia Weinig2 and Julin N Maloof1,

(1)University of California, Davis, CA, (2)University of Wyoming, Laramie, W100: Brassicas WY Assignment of Draft Sequences of the Radish (Raphanus sativus L) Genome to a High-Density Linkage Map W104: Brassicas Hiroyasu Kitashiba1, Feng Li1, Hideki Hirakawa2, Takahiro Kawanabe1, Homeologous Exchange Crosstalks Between Coresident Subgenomes of the Kenta Shirasawa2, Satoshi Tabata2 and Takeshi Nishio1, (1)Graduate School of Post-Neolithic Brassica napus Allopolyploid Agricultural Science, Tohoku University, Sendai, Japan, (2)Kazusa DNA Research Institute, Kisarazu, Japan Boulos Chalhoub, URGV-INRA, Evry, France

W101: Brassicas W105: Brassicas Analysis of Circadian Transcriptional Networks in Brassica Rapa Genome-Wide Association Study of the Complex Traits in Amphidiploid Elucidates Temporally Regulated Abiotic Stress Modules Rapeseed (Brassica napus L) Kathleen Greenham1, Carmela Rosaria Guadagno2, Malia Gehan3, Patrick Xiaoming Wu, Oil Crops Research Institute, Chinese Academy of Agricultural Edger4, Ping Lou1, Colleen J Doherty5, Todd C Mockler6, Brent E Ewers2, Sciences, Wuhan, China and Feng Li, Oil Crop Research Institute, Chinese Cynthia Weinig2 and C Robertson McClung1, (1)Dartmouth College, Hanover, Academy of Agricultural Sciences, Wuhan, China NH, (2)University of Wyoming, Laramie, WY, (3)Donald Danforth Plant Science Center, St Louis, MO, (4)University of California, Berkeley, CA, (5)North Carolina State University, Raleigh, NC, (6)Donald Danforth Plant Science Center, Saint Louis, MO

148 W106: Buffalo genome W108: Buffalo genome Status of the Buffalo Genome Project Using the 90K Buffalo SNP Array

John Williams1, Alessio Valentini2, Paolo Ajmone Marsan3, Raffaele Mazza4, Ezequiel Luis Nicolazzi1, Curtis P VanTassell2, Daniela Iamartino1, James M Aleksey Zimin5, Kim D Pruitt6, Tad S Sonstegard7, Curtis P VanTassell7, Reecy3, Eric Fritz-Waters3, Tad S Sonstegard2, James E Koltes3, Steven G Daniela Iamartino8, Francesco Strozzi8, James M Reecy9, Fabrizio Ferre10, Schroeder2, Ali Ahmad4, Jose Fernando Garcia5, Luigi Ramunno6, Gianfranco Cynthia Lawley11, Elisabete Amaral12, James Womack13 and International Cosenza6, John Williams1 and International Buffalo Consortium1, Buffalo Consortium8, (1)Fondazione Parco Tecnologico Padano, Lodi, Italy, (1)Fondazione Parco Tecnologico Padano, Lodi, Italy, (2)Animal Genomics (2)University of Tuscia, Viterbo, Italy, (3)Inst of Zootechnics, Università and Improvement Laboratory, USDA-ARS, Beltsville, MD, (3)Department of Cattolica del S Cuore, Piacenza, Italy, (4)Laboratorio Genetica e Servizi (LGS), Animal Science, Iowa State University, Ames, IA, (4)University of Veterinary Associazione Italiana Allevatori (AIA, Cremona, Italy, (5)University of and Animal Sciences,, Lahore, Pakistan, (5)Sao Paulo State University / Maryland, College Park, MD, (6)National Center for Biotechnology UNESP, Sao Paulo, Brazil, (6)Department of Agriculture, University of Naples Information (NCBI/NLM/NIH), Bethesda, MD, (7)Animal Genomics and “Federico II”, Napoli, Italy Improvement Laboratory, USDA-ARS, Beltsville, MD, (8)Parco Tecnologico Padano, Lodi, Italy, (9)Department of Animal Science, Iowa State University, Ames, IA, (10)CASPUR/CINECA, Rome, Italy, (11)Illumina, San Francisco, CA, (12)UNESP Sao Paulo State University, Sao Jose Rio Preto, Brazil, (13)Texas A&M University, College Station, TX

W107: Buffalo genome Comparison of CNVs in Buffalo with Other Species Derek Bickhart, Animal Genomics and Improvement Laboratory, USDA- ARS, Beltsville, MD and George Liu, Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD

W109: Buffalo genome W110: Buffalo genome Diversity and Origins of Domestic Buffalo Selection and Congenital Disease in Mediterranean Italian River Buffalo

Paolo Ajmone Marsan1, Marco Milanesi1, Elia Vajana1, Daniela Iamartino2, Lorenzo Sara Albarella, Department of Veterinary Medicine and Animal Production, Bomba1, Ezequiel Luis Nicolazzi2, Sahar Saad El-din Ahmed3, Jesus Rommel V University Federico II - Naples - Italy, Naples, Italy, Francesca Ciotola, 4 5 6 6 6 7 Herrera , Libertado Cruz , Shujun Zhang , Liguo Yang , Xingjie Hao , Fuyuan Zuo , Department of Health Sciences, University Magna Graecia, Catanzaro (Italy), Song-Jia Lai8, Shuilian Wang9, Ruyu Liu10, Yundeng Gong11, Mahdi Mokhber12, 13 14 15 16 Catanzaro, Italy, Angelo Coletta, Italian Water Buffalo Breeders Association, Yongjiang Mao , Feng Guan , Augustin Vlaic , Luigi Ramunno , Gianfranco Caserta, Italy, John Williams, Fondazione Parco Tecnologico Padano, Lodi, Cosenza16, Ali Ahmad17, Ihsan Soysal18, Emel Özkan Ünal18, Mariena Ketudat- 19 20 21 19 Italy and Vincenzo Peretti, Department of Veterinary Medicine and Animal Cairns , Jose Fernando Garcia , Yuri Tani Utsunomiya , Rangsun Parnpai , Marcela Gonçalves Drummond22, Peter Galbusera23, James Burton24, Eileen Hoal25, Production, University Federico II, Naples, Italy Yulnawati Yusnizar26, Cece Sumantri27, Bianca Moioli28, Alessio Valentini29, Licia 1 2 2 2 Colli , Alessandra Stella , John Williams and International Buffalo Consortium , (1)Inst of Zootechnics, Università Cattolica del S Cuore, Piacenza, Italy, (2)Fondazione Parco W111: Buffalo genome Tecnologico Padano, Lodi, Italy, (3)National Research Center, Dokki, Giza, Egypt, Using Sequence Data to Localise Developmental Mutations (4)Philippine Carabao Center, College, Laguna, Philippines, (5)PCC-Philippines Carabao Center, Nueva Ecija, Philippines, (6)Huazhong Agricultural University, Wuhan, China, Jeremy F Taylor1, Sara Albarella2, Robert D Schnabel1, Gary S Johnson3, (7)Southwest University, Chang yuan town, China, (8)Institute of Animal Genetics and 4 4 5 Breeding, Sichuan Agricultural University, Chengdu, China, (9)Hunan Agricultural University, Francesco Strozzi , Chiara Ferrandi and John Williams , (1)Division of Changsha, Hunan Province, China, (10)Guizhou Agricultural University, Guiyang, Guizhou Animal Sciences, University of Missouri, Columbia, MO, (2)Department of Province, China, (11)Enshi Technology college, Enshi, Hubei province, China, (12)University Veterinary Medicine and Animal Production, University Federico II - Naples - of Tehran, Karaj, Iran, (13)Yangzhou University, Yangzhou, Jiangshu province, China, Italy, Naples, Italy, (3)Department of Vet Pathobiology, University of (14)Hangzhou institute of Metrology of China, Huangzhou, Zhejiang province, China, Missouri, Columbia, MO, (4)Parco Tecnologico Padano, Lodi, Italy, (15)University of Agricultural Sciences and Veterinary Medicine, Cluj Napoca, Romania, (16)Department of Agriculture, University of Naples “Federico II”, Portici, Naples, Italy, (5)Fondazione Parco Tecnologico Padano, Lodi, Italy (17)COMSATS Institute of Information Technology, Sahiwal, Pakistan, (18)Namik Kemal University, Tekirdag, Turkey, (19)Suranaree University of Technology, Nakhon Ratchasima, Thailand, (20)Faculdade de Medicina Veterinária de Araçatuba, UNESP - Univ Estadual W112: Cacao Genomics Workshop Paulista, Araçatuba, Brazil, (21)Faculdade de Ciências Agrárias e Veterinárias, UNESP - Univ Study on the Origin of Cacao Swollen Shoot Virus and Its Dispersal on Estadual Paulista, Jaboticabal, Brazil, (22)Myleus Biotecnologia, Belo Horizonte, Brazil, (23)KMDA, Antwerpen, Belgium, (24)Earthwatch Institute, IUCN, Oxford, United Kingdom, Cacao Trees in West Africa (25)NRF/DST Centre of Excellence for Biomedical TB research, and MRC Centre for TB 1 2 3 4 research, Stellenbosch University, Stellenbosch, South Africa, (26)Research Center for Emmanuelle Muller , Francis Abrokwah , Koffie Kouakou , Essivi Mississo , 1 2 Biotechnology, Indonesian Institute of Sciences, Jalan Raya Bogor, Indonesia, (27)Bogor Marie-line Iskra-Caruana and Henry Dzahini-Obiatey , (1)CIRAD-UMR Agricultural University (IPB), Bogor, Indonesia, (28)Consiglio per la Ricerca e la BGPI, Montpellier cedex 5, France, (2)CRIG, Akim Tafo, Ghana, (3)CNRA, sperimentazione in Agricoltura, Monterotondo, Italy, (29)University of Tuscia, Viterbo, Italy Divo, Cote d'Ivoire, (4)ITRA, CRA-F, Kpalimé, Togo

149 W113: Cacao Genomics Workshop W115: Cacao Genomics Workshop Cacao Swollen Shoot Virus: A Re-Emergent, Mealybug-Transmitted Virus Biology and Genomics of Phytophthora spp: Fight Against a Potential Spreading in West Africa Global Chocolate Famine Judith K Brown, University of Arizona, Tucson, AZ Shahin Ali1, Ishmael Amoako-Attah2, Jonathan Shao3, Rebecca Bailey4, Mary 5 5 6 7 Strem , Martha Schmidt , Wilberth Phillips , Surendra Surujdeo-Maharaj , Jean-Philippe Marelli8, Martijn ten Hoopen9, Erica Goss10, Cristiano Villela W114: Cacao Genomics Workshop Dias11, Danyu Shen12, Brett Tyler13, Lyndel Meinhardt14 and Bryan Bailey15, The Biology, Genetic Diversity, and Genomics of Moniliophthora roreri, (1)USDA-ARS, Beltsville, MD, (2)Cocoa Research Institute of Ghana, Akim Causal Agent of Cacao Frosty Pod Rot New-Tafo, Ghana, (3)ARS-USDA BARC, BELTSVILLE, MD, (4)SPCL BARC ARS/USDA, Beltsville, MD, (5)SPCL BARC ARS-USDA, Bryan Bailey, Sustainable Perennial Crops Lab, USDA-ARS, Beltsville, MD, BELTSVILLE, MD, (6)CATIE, Turrialba, Costa Rica, (7)The University of the Shahin Ali, USDA-ARS, Beltsville, MD, Rachel Melnick, NIFA, Washington West Indies, St Augustine, Trinidad and Tobago, (8)Mars Center for Cocoa DC, DC, Mark Guiltinan, The Pennsylvania State University, University Park, Science-MARS Inc, Itajuipe, Brazil, (9)CIRAD, Montpellier, France, PA, Jane Crozier, CABI, Surrey, United Kingdom, Wilberth Phillips, CATIE, (10)University of Florida, Gainesville, FL, (11)MARS Inc, Bahia, Brazil, Turrialba, Costa Rica, Gonçalo Amarante Guimarães Pereira, Genomics and (12)Nanjing Agricultural University, Nanjing, China, (13)Oregon State Expression Laboratory - State University of Campinas - UNICAMP, Campinas, University, Corvallis, OR, (14)Sustainable Perennial Crops Lab, USDA/ARS, Brazil, Dapeng Zhang, Sustainable Perennial Crops Laboratory, USDA/ARS, Beltsville, MD, (15)Sustainable Perennial Crops Lab, USDA-ARS, Beltsville, Beltsville, MD and Lyndel Meinhardt, Sustainable Perennial Crops Lab, MD USDA/ARS, Beltsville, MD

W116: Cacao Genomics Workshop Interspecific Hybridization Between Theobroma cacao and Theobroma grandiflorum

Jean-Philippe Marelli1, Stefan E Royaert2, Valdevino Carmo3, Marcelo de Jesus Santos2, Dahyana S Britto4, Luciel dos Santos Fernandes5, Chigozie V Nwosu6, Juan Carlos Motamayor Arias7 and Raymond J Schnell8, (1)Mars Center for Cocoa Science-MARS Inc, Itajuipe, Brazil, (2)Mars Center for Cocoa Science - MARS Inc, Itajuípe (BA), Brazil, (3)Mars Center for Cacao Science-MARS Inc, Itajuipe, Brazil, (4)Mars Center for Cocoa Science, Itajuipe, Brazil, (5)Mars Center for Cocoa Science- MARS Inc, Itajuipe, Brazil, (6)Mars Chocolate North America, Hackettstown, NJ, (7)MARS Inc, Miami, FL, (8)MARS Inc, Miami, FL

W117: Cacao Genomics Workshop W120: Cacao Genomics Workshop Functional Genomics of Defense Response in Theobroma Cacao Classical and 'omics' Approaches to Control Witches' Broom Disease of Cacao Andrew Fister1, Zi Shi2, Siela Maximova1 and Mark Guiltinan1, (1)The Pennsylvania State University, University Park, PA, (2)University of Georgia, Karina Peres Gramacho1, Jose Luis Pires1, Didier Clement2, Uilson Vanderlei Athens, GA Lopes1 and Fabienne Micheli3, (1)Cacao Research Center (CEPEC/CEPLAC), Itabuna, Brazil, (2)CIRAD, UMR AGAP, Montpellier, France, (3)Universidade Estadual de Santa Cruz (UESC), Ilheus, Brazil W118: Cacao Genomics Workshop

Identification of QTL Involved in the Production of Rooted Cuttings in a Segregating Mapping Population of Theobroma cacao L in Brazil W121: Cassava Genomics Genome Sequence and Genetic Diversity of Cassava and Its Wild Relatives Stefan E Royaert1, Marcelo de Jesus Santos1, Jean-Philippe Marelli2, Raymond J Schnell3 and Juan Carlos Motamayor Arias3, (1)Mars Center for Jessen V Bredeson, University of California, Berkeley, Berkeley, CA Cocoa Science - MARS Inc, Itajuípe (BA), Brazil, (2)Mars Center for Cocoa Science - MARS Inc, Itajuipe (BA), Brazil, (3)MARS Inc, Miami, FL W122: Cassava Genomics

Development of Herbicide-Tolerant Cassava Using Random Mutagenesis W119: Cacao Genomics Workshop 1 2 2 1 Association Mapping in Cacao Populations from Hawaii Emily J McCallum , Sandra Mansveld , Ludvik K Wachowski , Kim Schlegel , Serena Rigotti1, Michiel TJ de Both2 and Wilhelm Gruissem1, (1)ETH Zürich, Osman A Gutierrez1, Chifumi Nagai2, Rebecca Heinig2, Kathleen A Cariaga1, Zurich, Switzerland, (2)KeyGene, Wageningen, Netherlands 3 1 4 Donald Livingstone III , Cecile L Tondo , Juan Carlos Motamayor Arias and Raymond J Schnell3, (1)USDA ARS SHRS, Miami, FL, (2)Hawaii Agriculture Research Center, Kunia, HI, (3)MARS Inc, Miami, FL, (4)MARS Inc, Miami, W123: Cassava Genomics FL Identifying Genetic Load By Whole Genome and Transcriptome Sequencing of Cassava Breeding Lines Ramu Punna, Fei Lu, Janu Verma and Edward S Buckler, Institute for Genomic Diversity, Cornell University, Ithaca, NY

150 W124: Cassava Genomics W128: Cat & Dog Workshop Genome-Wide Association Analyses Reveal Key Aspects of Genetic Inherited Osteoarthropathy in Scottish Fold Cats Is Associated with Architecture Cassava in Africa Altered Calcium Channel Function Marnin Wolfe, Cornell University, Ithaca, NY Barbara Gandolfi, University of Missouri-Columbia, Columbia, MO, Leslie A Lyons, University of Missouri - Columbia, Columbia, MO, columbia, MO, Badri Adhikari, University of Missouri - Columbia, Columbia, MO, Columbia, W125: Cassava Genomics MO, Jianlin Cheng, university of Missouri - Columbia, Columbia, MO, TBD columbia, MO, Richard Malik, University of Sydney, Sydney, Australia, Claire Wade, University of Sydney, Sydney NSW, Australia, Shireen Lamande, The Nigel J Taylor, Donald Danforth Plant Science Center, St Louis, MO Royal Children’s Hospital, Victoria, Australia and Bianca Haase, University of Sydney, Sydney, Australia W126: Cassava Genomics TBD W129: Cat & Dog Workshop Mapping Traits in Feline Hybrids Morag Ferguson, International Institute of Tropical Agriculture (IITA), Nairobi, Kenya William J Murphy, Texas A&M University, College Station, TX

W127: Cat & Dog Workshop W130: Cat & Dog Workshop Comparative Analysis of the Cat Genome Reveals Clues to Feline Recent successes and growth of the 99 Lives Cat Genome Sequencing Domestication Initiative 1 2 3 4 Michael J Montague , Gang Li , Barbara Gandolfi , Carlos A Driscoll , Leslie A Lyons, University of Missouri-Columbia, Columbia, MO Richard K Wilson5, Leslie A Lyons3, William J Murphy6 and Wesley Warren7,

(1)Washington University School of Medicine, St Louis, MO, (2)Texas A&M University College of Veterinary Medicine, College Station, TX, (3)University of Missouri-Columbia, Columbia, MO, (4)National Institutes of Health, Bethesda, MD, (5)The Genome Institute at Washington University, Saint Louis, MO, (6)Texas A&M University, College Station, TX, (7)The Genome Institute, St Louis, MO

W131: Cat & Dog Workshop W135: Cattle/Sheep/Goat 1 Activities and Biological Implications of Mobile Elements in Canines Analysis of the Sheep Genome, with a Focus on the Evolution and

1 2 3 4 Function of the Rumen and Implications for Methane Production by Julia Wildschutte , Aurelien J Doucet , Robert K Wayne , Carles Vila , Ruminants Thomas Marques-Bonet5, Adam R Boyko6, John V Moran2,7 and Jeffrey M Kidd2, (1)University of Michigan, Ann Arbor, MI, (2)University of Michigan Brian Dalrymple, CSIRO Agriculture Flagship, St Lucia, Australia, Ruidong Medical School, Ann Arbor, MI, (3)University of California, Los Angeles, Los Xiang, CSIRO Agriculture Flagship, St Lucia, Australia, Jiang Yu, CSIRO Angeles, CA, (4)Estación Biológica de Doñana, Sevilla, Spain, (5)ICREA at Animal, Food and Health Sciences, Brisbane, Australia, Jude Bond, DPI NSW, the Institut de Biologia Evolutiva (Univ Pompeu Fabra/CSIC), Barcelona, Armidale, Australia, V Hutton Oddy, DPI NSW, Armidal, Australia, Phil Spain, (6)Department of Biomedical Sciences Cornell University, Ithaca, NY, Vercoe, The University of Western Australia, Crawley, Australia, John (7)Howard Hughes Medical Institute, Ann Arbor, MI McEwan, Invermay Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand, Pablo Fuentes-Utrilla, Edinburgh Genomics, Easter Bush, United Kingdom, Alan L Archibald, The Roslin Institute and R(D)SVS, University of W132: Cat & Dog Workshop Edinburgh, Midlothian, United Kingdom and Richard Talbot, Edinburgh Signatures of Positive Selection in the Dog Genome Genomics, University of Edinburgh, Easter Bush, United Kingdom

Adam R Boyko, Department of Biomedical Sciences Cornell University, Ithaca, NY W136: Cattle/Sheep/Goat 1 Genome Wide Methylation Patterns in Holstein Leukocytes W133: Cat & Dog Workshop Chad Dechow, The Pennsylvania State University, State College, PA and Utilization of Contemporary Canine Diversity to Investigate Breed- Wansheng Liu, Department of Animal Science, Penn State University, Specific Selection and Trait Fixation University Park, PA

Brian W Davis, NHGRI, Bethesda, MD

W134: Cat & Dog Workshop Dissecting the Role Regulatory Variants Play in the Subphenotypes of Canine Complex Traits Jennifer Meadows, Uppsala University, Uppsala, Sweden

151 W137: Cattle/Sheep/Goat 1 W139: Cattle/Sheep/Goat 1 Update on the International Goat Genome Consortium Projects Improving the Reference Genomes for the Sheep and the Cow

Gwenola Tosser-Klopp1, International Goat Genome Consortium (IGGC)2, Kim C Worley1, Adam C English1, Xiang Qin1, Shwetha C Murali1, Daniel S Max F Rothschild3, Heather J Huson4, Ezequiel Luis Nicolazzi5, Tad S T Hughes1, Stephen Richards1, Jeffrey Rogers1, Yi Han1, Vanessa Vee1, Min Sonstegard6, Marcel Amills7, Penny Riggs8, Curtis P VanTassell6, Paolo Wang1, Timothy PL Smith2, Tara G McDaneld2, Lee Alexander3, Brian Ajmone Marsan9, Alessandra Stella10, Brian Sayre11, Wenguang Zhang12 and Dalrymple4, James W Kijas5, Noelle Cockett6, David C Schwartz7, Shiguo Rachel Rupp13, (1)INRA, Castanet-Tolosan, France, (2)INRA, CASTANET- Zhou7, Eric Boerwinkle1, Donna M Muzny1 and Richard A Gibbs1, (1)Baylor TOLOSAN cedex, France, (3)Iowa State University, Ames, IA, (4)Cornell College of Medicine, Houston, TX, (2)USDA-ARS, US Meat Animal Research University, Ithaca, NY, (5)Fondazione Parco Tecnologico Padano, Lodi, Italy, Center, Clay Center, NE, (3)USDA ARS, Miles City, MT, (4)CSIRO (6)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Agriculture Flagship, St Lucia, Australia, (5)CSIRO Animal, Health and Food MD, (7)Center for Research in Agricultural Genomics, BARCELONA, Spain, Science, St Lucia, Australia, (6)Utah State University, Logan, UT, (8)Texas A&M University, College Station, TX, (9)Inst of Zootechnics, (7)University of Wisconsin-Madison, Madison, WI Università Cattolica del S Cuore, Piacenza, Italy, (10)FPTP, Lodi, Italy, (11)Virginia State University, Petersburg, VA, (12)Kumming Institute of Zoology, Kunming, China, (13)INRA, Toulouse, France W140: Cattle/Sheep/Goat 1 New Perspectives from Two Large NIFA Funded Grants: An Overview of GWAS Results W138: Cattle/Sheep/Goat 1 Muscle Hypertrophy and Polar Overdominance in Callipyge Sheep Christopher M Seabury, Texas A&M University, College Station, TX, Feed Efficiency Consortium, http://wwwbeefefficiencyorg/, Columbia, MO and Christopher A Bidwell, Purdue University, West Lafayette, IN Bovine Respiratory Disease Consortium, http://wwwbrdcomplexorg, College Station, TX

W141: Cattle/Sheep/Goat 1 W143: Cattle/Sheep/Goat 2 Whole-Genome Sequencing Reveals the Diversity and Population-Genetic A Genetic Investigation of Isle of Jersey Cattle, the Foundation of the Properties of Cattle CNVs Jersey Breed George E Liu1, Derek Bickhart2, Lingyang Xu3, Jana L Hutchison1, John B Heather J Huson1, Tad S Sonstegard2, James Godfrey3, David Hambrook3, Cole1, Steven G Schroeder2, Jiuzhou Song3, Jose Fernando Garcia4, Curtis P Cari Wolfe4, George R Wiggans5, Harvey Blackburn6 and Curtis P Van VanTassell2, Tad S Sonstegard2, Robert D Schnabel5, Jeremy F Taylor5 and Tassell7, (1)Cornell University, Ithaca, NY, (2)Animal Genomics and Harris Lewin6, (1)Animal Genomics and Improvement Laboratory, ARS- Improvement Laboratory, USDA-ARS, Beltsville, MD, (3)Royal Jersey USDA, Beltsville, MD, (2)Animal Genomics and Improvement Laboratory, Agricultural and Horticultural Society, Trinity, United Kingdom, (4)American USDA-ARS, Beltsville, MD, (3)University of Maryland, College Park, MD, Jersey Cattle Association, Reynoldsburg, OH, (5)Animal Genomics and (4)Sao Paulo State University / UNESP, Sao Paulo, Brazil, (5)Division of Improvement Laboratory, ARS-USDA, Beltsville, MD, (6)National Center for Animal Sciences, University of Missouri, Columbia, MO, (6)University of Genetic Resources Preservation, USDA, Fort Collins, CO, (7)USDA-ARS- California, Davis, Davis, CA AGIL, Beltsville, MD

W142: Cattle/Sheep/Goat 2 W144: Cattle/Sheep/Goat 2 A Livestock Database for Long Term Storage and Use of Genomic and The Use of PacBio and Hi-C Data in de novo Assembly of the Goat Other Associated Information Genome

Harvey Blackburn1, Ted Manahan2, Milton Thomas3, Richard M Enns3, Scott Derek Bickhart1, Sergey Koren2, Adam Phillippy2, Timothy PL Smith3, Ivan E Speidel3 and Samuel Paiva4, (1)National Center for Genetic Resources Liachko4, Joshua N Burton4, Brian Sayre5, Heather J Huson6, Steven G Preservation, USDA, Fort Collins, CO, (2)ARS, Ft Collins, CO, (3)Colorado Schroeder1, Curtis P VanTassell1 and Tad S Sonstegard1, (1)Animal Genomics State University, Fort Collins, CO, (4)EMBRAPA, Ft Collins, CO and Improvement Laboratory, USDA-ARS, Beltsville, MD, (2)DOD - National Biodefense and Countermeasures Center, Frederick, MD, (3)USDA-ARS, US Meat Animal Research Center, Clay Center, NE, (4)University of Washington - Department of Genome Sciences, Seattle, WA, (5)Virginia State University, Petersburg, VA, (6)Cornell University, Ithaca, NY

W145: Cattle/Sheep/Goat 2 Genomic Analyses for Palatability of Beef Raluca Mateescu1, Dorian J Garrick2 and James M Reecy2, (1)Dept of Animal Sciences, University of Florida, Gainesville, FL, (2)Department of Animal Science, Iowa State University, Ames, IA

152 W146: Cattle/Sheep/Goat 2 W149: Cattle/Sheep/Goat 2 Utilisation of the Ovine HD SNP Chip for Meat Quality Traits in NZ Evidence for Positive Selection of Taurine Genes within a QTL Region on Composite Terminal Sire Breeds Chromosome X Associated with Testicular Size in Australian Brahman Cattle Shannon Clarke1, Michael Lee2, Rudiger Brauning1, Wendy Bain1, Tracey Van Stijn1, Rayna Anderson1, Ken Dodds1 and John McEwan1, (1)Invermay Russell Lyons, Animal Genetics Laboratory, School of Veterinary Science,The Agricultural Centre, AgResearch Ltd, Mosgiel, New Zealand, (2)University of University of Queensland, Gatton, Australia, Nguyen To Loan, School of Otago, Dunedin, New Zealand Chemistry and Molecular Bioscience, St Lucia, Australia, Marina R S Fortes, School of Chemistry and Molecular Bioscience, The University of Queensland, Australia, St Lucia, Australia, Matthew Kelly, Queensland Alliance for W147: Cattle/Sheep/Goat 2 Agriculture & Food Innovation, St Lucia, Australia, Sean McWilliam, CSIRO DNA Methylation Affects Phenotypic Variation in Cattle Possessing Agriculture Flagship, St Lucia, Australia, Sigrid A Lehnert, CSIRO Agriculture Extreme Phenotypes for Residual Feed Intake Flagship, Brisbane, Australia and Stephen Moore, University of Queensland, Brisbane, Australia Stephanie McKay1, Jae Woo Kim2, Richard Chapple3, Robert D Schnabel4, 2 5 6 7 Darren E Hagen , Kevin Wells , Derek Bickhart , James E Koltes , James M Reecy7, Jeremy F Taylor4 and Kristen Taylor8, (1)University of Vermont, W150: Cattle/Sheep/Goat 2 Burlington, VT, (2)University of Missouri, Columbia, MO, (3)Baylor College Genome Changes Due to Forty Years of Artificial Selection Associated of Medicine, Houston, TX, (4)Division of Animal Sciences, University of with Divergent Dairy Production and Reproduction Missouri, Columbia, MO, (5)University of Missouri, Columba, MO, (6)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, Tad S Sonstegard1, Li Ma2, Eui-Soo Kim1, Curtis P VanTassell3, George R (7)Department of Animal Science, Iowa State University, Ames, IA, Wiggans1, Brian A Crooker4, John B Cole1, George Liu1, John R Garbe5, Scott (8)University of Missouri, Colubmia, MO C Fahrenkrug6, F Abel Ponce De Leon4 and Yang Da4, (1)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD, (2)Department of Animal and Avian Sciences, University of Maryland, College Park, MD, W148: Cattle/Sheep/Goat 2 (3)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, Mapping a Major Gene for Bovine Ovulation Rate MD, (4)Department of Animal Science, University of Minnesota, Saint Paul, MN, (5)Minnesota Supercomputer Institute, University of Minnesota, Brian W Kirkpatrick, University of Wisconsin-Madison, Madison, WI and Minneapolis, MN, (6)Recombinetics, St Paul, MN Chris A Morris, AgResearch, Hamilton, New Zealand

W151: Cattle/Sheep/Goat 2 W155: Cattle/Swine Major Genes Influencing Prolificacy in Sheep: A Source of Basic Discovery of Convergent Adaptations that Alleviate Heat Stress in Taurine Knowledge of Ovarian Function and a Tool for Genetic Improvement Cattle Stéphane Fabre, Julie Demars, Laurence Drouilhet, Camille Mansanet, Tad S Sonstegard1, Derek Bickhart1, Antonio J Landaeta-Hernandez2, Yuri Gwenola Tosser-Klopp and Loys Bodin, INRA, Castanet Tolosan cedex, Tani Utsunomiya3, Melvin P Morales4, Esbal Jimenez4, Steven G Schroeder1, France Jiajie Sun5, William Barendse6, Laercio R Porto Neto7, Antonio Reverter8, John 5 9 10 11 B Cole , Peter J Hansen , Jose Fernando Garcia and Heather J Huson , (1)Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, W152: Cattle/Sheep/Goat 2 MD, (2)Universidad del Zulia, Maracaibo, Venezuela, (3)Faculdade de A Systems Biology Approach to Prioritize SNP and Genes Affecting Ciências Agrárias e Veterinárias, UNESP - Univ Estadual Paulista, Araçatuba, Fertility in Tropical Beef Cattle Brazil, (4)University of Puerto Rico-Mayaguez, Mayaguez, PR, (5)Animal Genomics and Improvement Laboratory, ARS-USDA, Beltsville, MD, Laercio Portoneto, Sigrid A Lehnert and Antonio Reverter, CSIRO (6)Cooperative Research Centre for Beef Genetic Technologies, St Lucia, Agriculture Flagship, Brisbane, Australia Australia, (7)The University of Queensland, School of Veterinary Science, Gatton QLD, Australia, (8)CSIRO Agriculture Flagship, Brisbane, Queensland, Australia, (9)University of Florida, Gainesville, FL, (10)Sao Paulo State W153: Cattle/Swine University / UNESP, Sao Paulo, Brazil, (11)Cornell University, Ithaca, NY NIFA’s Role in Catalyzing Transformative Research in Animal Genomics

Parag Chitnis, National Institute of Food and Agriculture, Washington, DC W156: Cattle/Swine Diachrony and Synchrony When Studying Pig Genomes W154: Cattle/Swine Miguel Perez-Enciso1, Oscar Ramirez2, William Burgos-Paz3, Erica Bianco3, Identification of Causal Variants Using Next Generation Sequencing Data Lourdes Vargas4 and Maria Sana5, (1)Centre for Research in Agrigenomics (CRAG) and ICREA, Barcelona, Spain, (2)Universitat Pompeu Fabra, Jeremy F Taylor, Jared E Decker, Lynsey K Whitacre, Jesse L Hoff, David J barcelona, Spain, (3)Centre for Research in Agricultural Genomics, Bellaterra, Patterson and Robert D Schnabel, Division of Animal Sciences, University of Spain, (4)Sistema Nacional de Areas de Conservación, San Jose, Costa Rica, Missouri, Columbia, MO (5)Universitat Autonoma Barcelona, Bellaterra, Spain

153 W157: Cattle/Swine W161: Citrus Genome GWAS for Direct and Indirect Effect on Androstenone Exploiting the Citrus Genome Towards Understanding Genetic Traits Related to Fruit Quality and Disease Resistance Naomi Duijvesteijn and Egbert Knol, Topigs Norsvin, Beuningen, Netherlands Marco A Takita1, Maiara Curtolo2, Mariangela Cristofani-Yaly1, Daniel Bedo 3 1 1 Assumpção Castro , Leonardo P Boava , Evandro Henrique Schinor , Marinês Bastianel1, Valdenice Moreira Novelli1 and Marcos Antonio Machado1, W158: Cattle/Swine (1)Centro de Citricultura Sylvio Moreira, IAC, Cordeiropolis, SP, Brazil, Development and Utilization of Bioinformatic Tools in Livestock Genomics (2)Centro de Energia Nuclear na Agricultura - USP, Piracicaba, SP, Brazil, (3)CBMEG, State University of Campinas, Campinas, Brazil James M Reecy, Department of Animal Science, Iowa State University, Ames,

IA W162: Citrus Genome

Citrus Genome DB Updates W159: Cattle/Swine Management and Visualization of Ianimal Quantitative Data Using iPlant Sook Jung1, Julia Piaskowski1, Stephen P Ficklin1, Chun-Huai Cheng1, Ping and EPIC-CoGe Zheng1, Mercy Olmstead2, Albert G Abbott3, Chunxian Chen4, Lukas Mueller5, Fred G Gmitter6 and Dorrie Main1, (1)Washington State University, Pullman, Sabarinath Subramaniam, Bio5 Institute, University of Arizona, Tucson, AZ WA, (2)University of Florida, Gainesville, FL, (3)UMR BFP1332 -INRA- Universite Bordeaux II, Villenave d'Ornon Cedex, France, (4)USDA-ARS, SEFNRL, Byron, GA, (5)Boyce Thompson Institute for Plant Research, Ithaca, W160: Citrus Genome NY, (6)University of Florida, IFAS-CREC, Lake Alfred, FL An RNA-Seq Based Reference Transcriptome for Citrus

Javier Terol, Francisco R Tadeo and Manuel Talon, Centro de Genomica, W163: Citrus Genome IVIA, Moncada, Valencia, Spain Verifying the Mandarin Breeding: Lessons from Parentage Analysis of Citrus Varieties Tokurou Shimizu1, Akira Kitajima2, Terutaka Yoshioka1, Keisuke Nonaka3, Shingo Goto1, Eli Kaminuma4 and Yasukazu Nakamura4, (1)NARO Institute of Fruit Tree Science, Shizuoka, Japan, (2)Kyoto University, Osaka, Japan, (3)NARO Institute of Fruit Tree Science, Nagasaki, Japan, (4)Genome Informatics Laboratory, NIG, ROIS, Shizuoka, Japan

W164: Citrus Genome W169: Climate Change and ICRCGC 1 Comparative Analysis of the Chloroplast Genome of the Genus Citrus Advances in the Breeding and Genetics of Heat Tolerance to Alleviate the Effects of Climate Change, with a Focus on Common Bean Manuel Talon1, Jose Carbonell2, Roberto Alonso2, VIctoria Ibañez3, Javier Terol1 and Joaquin Dopazo2, (1)Centro de Genomica, IVIA, Moncada, Timothy Porch1, Angela M Linares2, Juan Carlos Rosas3, Damaris Santana4, Valencia, Spain, (2)Institute for Genomcis and Computational Medicine, CIPF, John Hart1, Phillip Griffiths5 and James Beaver4, (1)USDA-ARS Tropical Valencia, Spain, (3)Centro de Genomica, IVIA, Moncada (Valencia), Spain Agriculture Research Station, Mayaguez, PR, (2)USDA-ARS, Mayaguez, PR, (3)Escuela Agricola Panamericana, Tegucigalpa, Honduras, (4)University of Puerto Rico, Mayaguez, PR, (5)Cornell University, Geneva, NY W165: Climate Change and ICRCGC 1

Translational Genomics for Developing Climate-Change Ready Chickpeas W170: Climate Change and ICRCGC 1 Rajeev K Varshney, ICRISAT, Greater Hyderabad, India Uncovering Major and Minor QTLs Generating Natural Variation in Heading Date Among Asian Rice Cultivars W166: Climate Change and ICRCGC 1 Kiyosumi Hori and Masahiro Yano, National Institute of Agrobiological Developing Disease Resistant Crop Varieties in the Changing Scenario of Sciences, Tsukuba, Japan Global Warming and Climate Change Rishu Sharma, Bidhan Chandra Agricultural University, Nadia, India W171: Climate Change and ICRCGC 1 Fostering Global Collaboration to Combat Climate Change through Networking of Existing Crop-Based Consortia W167: Climate Change and ICRCGC 1 Developing Insect Resistant Crop Varieties to Combat New Insects and Robert Henry, University of Queensland QAAFI, Brisbane, Australia New Biotypes Wayne Hunter, USDA Agricultural Research Service, Fort Pierce, FL W172: Climate Change and ICRCGC 2 Using Whole-Genome Sequences for Breeding Climate Resilient Cereals W168: Climate Change and ICRCGC 1 Jane Rogers, International Wheat Genome Sequencing Consortium, Developing Crop Varieties with Improved Nutrient-Use Efficiency Cambridge, United Kingdom, Catherine Feuillet, Bayer CropScience, Morrisville, NC, Jan E Leach, Colorado State University, Fort Collins, CO, David A Lightfoot, Southern Illinois University, Carbondale, IL Angela Records, USAID/BFS/ARP, Washington, DC, Elodie Rey, Institute of Experimental Botany AS CR, Olomouc - Holice, Czech Republic and Kellye Eversole, IWGSC, Bethesda, MD

154 W173: Climate Change and ICRCGC 2 W178: Coffee Genomics Developing Crop Varieties with Genome Plasticity Long-Read Deep Sequencing and Assembly of the Allotetraploid Coffea arabica cv Caturra and its Maternal Ancestral Diploid species Coffea Jauhar Ali, PBGB, International Rice Research Institute, Metro Manila, eugenioides Philippines 1 1 1 1 Alvaro Gaitan , Marco A Cristancho , Carmenza E Gongora , Pilar Moncada , Huver Posada1,2, Fernando Gast1, Marcela Yepes3 and Herb Aldwinckle3, W174: Climate Change and ICRCGC 2 (1)Centro Nacional de Investigaciones de Cafe, CENICAFE, Chinchiná, Designing Flowering Times for Climate Optimized Grain and Energy Colombia, (2)Federacion Nacional de Cafeteros de Colombia (FNC)/ Centro Sorghum Crops Nacional de Investigaciones de Café (CENICAFE), Chinchina, Caldas, Colombia, (3)Cornell University, Geneva, NY John Mullet1, Daryl Morishige1, William Rooney1, Rebecca Murphy2 and 3 Shanshan Yang , (1)Texas A&M University, College Station, TX, (2)Centenary College, College Station, TX, (3)Texas A&M Unviversity, W179: Coffee Genomics College Station, TX Progress report on the sequencing and assembly of the allotetraploid Coffea arabica var Bourbon genome W175: Climate Change and ICRCGC 2 Michele Morgante1,2, Simone Scalabrin3, Davide Scaglione3, Federica Mining Climate Smart Genes from Allied Gene Pools Cattonaro2, Federica Magni2, Irena Jurman2, Mario Cerutti4, Furio Suggi Liverani5, Luciano Navarini5, Lorenzo Del Terra5, Gloria Pellegrino4, Giorgio Michael Abberton, International Institute of Tropical Agriculture (IITA), Graziosi6, Nicola Vitulo7 and Giorgio Valle7, (1)Università di Udine, Udine, Ibadan, Nigeria Italy, (2)Istituto di Genomica Applicata, Udine, Italy, (3)IGA Technology Services, Udine, Italy, (4)Lavazza SpA, Torino, Italy, (5)Illycaffè SpA, Trieste, Italy, (6)DNA Analytica Srl, Trieste, Italy, (7)Dipartimento di Biologia; W176: Climate Change and ICRCGC 2 Università di Padova, Padova, Italy CO2 Sequestration to Mitigate Effects of Climate Change

Leland J Cseke, The University of Alabama in Huntsville, Huntsville, AL

W177: Climate Change and ICRCGC 2 Adapting Crops to Climate Changes by Evolutionary-Participatory Plant Breeding

Salvatore Ceccarelli, Free Lance, Patancheru, India

W180: Coffee Genomics W181: Coffee Genomics Dihaploid Coffea arabica Genome Sequencing and Assembly Transposable Element Distribution, Abundance and Impact in Genome Evolution in the Genus Coffea Alexandre de Kochko1, Dominique Crouzillat2, Michel Rigoreau2, Maud Lepelley2, Laurence Bellanger2, Virginie Merot l'Anthoene2, Celine Romain Guyot1, Thibaud Darre2, Dominique Crouzillat3, Michel Rigoreau3, Vandecasteele2, Romain Guyot3, Valerie Poncet3, Christine Tranchant- Serge Hamon4, Alexandre de Kochko2, Emmanuel Couturon1 and Perla Dubreuil1, Perla Hamon3, Serge Hamon3, Emmanuel Couturon3, Patrick Hamon1, (1)IRD UMR DIADE, Montpellier cedex 5, France, (2)Institut de Descombes4, Deborah Moine4, Lukas Mueller5, Susan R Strickler5, Alan Recherche pour le Développement, Montpellier cedex 5, France, (3)Centre Andrade6, Luiz-Filipe Protasio Pereira7, Pierre Marraccini8, Giovanni R&D Nestlé Tours, Tours, France, (4)Institut de Recherche pour le Giuliano9, Alessia Fiore10, Marco Pietrella10, Giuseppe Aprea10, Ray Ming11, Développement, Montpellier Cedex 5, France 12 13 14 15 Jennifer Wai , Douglas S Domingues , Alexandre Paschoal , Gerrit Kuhn , Jonas Korlach15, Jason Chin15, David Sankoff16, Chunfang Zheng16 and Victor A Albert17, (1)IRD UMR DIADE, Montpellier, France, (2)Centre R&D Nestlé W182: Coffee Genomics Tours, Tours, France, (3)IRD UMR DIADE, Montpellier cedex 5, France, Impact of Transposable Elements on the Evolution of Coffea arabica (4)NIHS, Lausanne, Switzerland, (5)Boyce Thompson Institute for Plant (Rubiaceae) Research, Ithaca, NY, (6)Embrapa, Brasilia, Brazil, (7)Embrapa Café, 1 2 2 2 Londrina, Brazil, (8)CIRAD, Brasilia, Brazil, (9)ENEA - Italian Agency for Elaine S Dias , Serge Hamon , Perla Hamon , Romain Guyot , Alexandre de 2 1 New Technologies, Roma, Italy, (10)ENEA - Italian Agency for New Kochko and Claudia Carareto , (1)UNESP - Universidade Estatual Paulista, Technologies, Rome, Italy, (11)University of Illinois at Urbana-Champaign, São José do Rio Preto, SP, Brazil, (2)IRD UMR DIADE, Montpellier cedex 5, Urbana, IL, (12)University of Illinois Urbana-Champaign, Urbana Champaign, France IL, (13)Instituto Agronômico do Paraná, Londrina, Brazil, (14)Univ of Londrina, Londrina, Brazil, (15)Pacific Biosciences, Menlo Park, CA, W183: Comparative Genomics (16)University of Ottawa, Ottawa, ON, Canada, (17)University of Buffalo, Buffalo, NY One Plant - Multiple Genomes: Phasing Homeologs in Polyploid Wheat Ksenia Krasileva1, Vince Buffalo1, Sarah Ayling2, Paul C Bailey2, Schichen Wang3, Hans Vasquez-Gross4, Stephen Pearce1, Cristobal Uauy5 and Jorge Dubcovsky1, (1)University of California Davis, Davis, CA, (2)The Genome Analysis Centre, Norwich, United Kingdom, (3)Kansas State University, Manhattan, KS, (4)Department of Plant Sciences, University of California, Davis, Davis, CA, (5)John Innes Centre, Norwich, England

155 W184: Comparative Genomics W188: Comparative Genomics Comprehensive De Novo genome Assemblies and Resequencing of Diverse Slow Rate of Genome Evolution and Frequent Cycles of WGD followed by Individuals Provides Insights into Structural Diversity and the Dysploid Reduction in Woody Rosids Relationship with Transcriptional Diversity in Maize Jan Dvorak1, Ming-Cheng Luo2, Frank M You3, Ji-Rui Wang4, Tingting Zhu1, Candice Hirsch1, Cory D Hirsch1, Alex Brohammer1, Megan J Bowman2, Pingchuan Li5, Abhaya Dandekar6, Charles Leslie7, Pat McGuire1 and Kevin L Childs2, Ilya Soifer3, Omer Barad4, C Robin Buell2, Natalia de Leon5, Mallikarjuna Aradhya8, (1)Department of Plant Sciences, University of Mark A Mikel6 and Shawn Kaeppler5, (1)University of Minnesota, Saint Paul, California, Davis, CA, (2)University of California, Davis, CA, (3)Agriculture MN, (2)Michigan State University, East Lansing, MI, (3)NRGENE LTD, Ness- and Agri-Food Canada, Winnipeg, MB, Canada, (4)Sichuan Agricultural Ziona, Israel, (4)NRGENE LTD, Ness-Ziona, Israel, (5)University of University, China, Chengdu, SC, China, (5)Agriculture and Agri-Food Canada, Wisconsin-Madison, Madison, WI, (6)University of Illinois at Urbana- Morden, MB, Canada, (6)University of California Davis, Davis, CA, Champaign, Urbana, IL (7)UCDAVIS, DAVIS, CA, (8)USDA National Clonal Germplasm Repository, Davis, CA W185: Comparative Genomics Genomic Insights into the Evolution of Angiosperms W189: Components of Apomixis Stress Response of Reproductive Pathways in Facultative Apomictic Joachim Messing, Rutgers University, Piscataway, NJ Ranunculus Auricomus Hybrids

Elvira Hoerandl1, Simone Klatt2, Ladislav Hodac2, Diego Hojsgaard2, Franz W186: Comparative Genomics Hadacek2, Tim Sharbel3 and Marco Pellino3, (1)Georg-August-University of FROM ONE TO THE MANY GENOMES OF A PLANT: THE Goettingen, Gottingen, Germany, (2)Georg-August-University of Goettingen, EVOLUTION OF THE GRAPEVINE PAN-GENOME Goettingen, Germany, (3)IPK Gatersleben, Gatersleben, Germany

1,2 2,3 1,2 1,2 Gabriele Magris , Sara Pinosio , Fabio Marroni , Gabriele Di Gaspero and Michele Morgante1,2, (1)Università di Udine, Udine, Italy, (2)Istituto di W190: Components of Apomixis Genomica Applicata, Udine, Italy, (3)Plant Genetics Institute, National Hot on the Trail of the Sex-Apomixis Switch in Boechera (Brassicaceae) Research Council, Florence, Italy 1 1 1 John G Carman , Mayelyn Mateo de Arias , Susan M Nelson , Xinghua Zhao2, Lei Gao1, Manoj Srivastava3, David A Sherwood1 and Michael D W187: Comparative Genomics Windham4, (1)Utah State University, Logan, UT, (2)Inner Mongolia Comparative Epigenomics: Exploring Patterns of DNA Methylation Agricultural University, Hohhot, China, (3)Indian Grassland and Fodder throughout Flowering Plants Research Institute, Jhansi, India, (4)Duke University, Durham, NC

Robert Schmitz, University of Georgia, Athens, GA

W191: Components of Apomixis W195: Compositae Male Apomixis: An Alternative Strategy to Synthetically Engineer Clonal Transposable Elements Drive Lineage-Specific Patterns of Genome Seed Formation in Plants Expansion and Turnover in the Asteraceae Nico De Storme, Ghent University, Gent, Belgium S Evan Staton, University of British Columbia, Vancouver, BC, Canada

W192: Components of Apomixis W196: Compositae Harnessing Components of Apomixis for Agricultural Productivity Associating Phenotype to Genotype in Lettuce Using NGS, in silico Analyses, High Resolution Genetic Maps and Targeted Fine Mapping Shai J Lawit, Mark A Chamberlin, Tim Fox, Michelle Van Allen and Marc C Albertsen, DuPont Pioneer, Johnston, IA Dean Lavelle, Sebastian Reyes Chin-Wo, Alexander Kozik, Maria Jose Truco, Lutz Froenicke, Marilena Christopoulou, Angel Fernandez i Marti, Miguel Macias Gonzalez, Carolina Font i Forcada, Huaqin Xu and Richard W193: Components of Apomixis Michelmore, Genome Center, University of California, Davis, CA Flower Transcriptomics for Uncovering Genes Related to Plant Reproduction in the Facultative Apomict Hypericum perforatum L W197: Compositae 1 1 2 Gianni Barcaccia , Giulio Galla and Tim Sharbel , (1)University of Padua, The Accumulation of Deleterious Mutations As a Consequence of Legnaro, Italy, (2)IPK Gatersleben, Gatersleben, Germany Domestication and Improvement in Sunflowers

Sebastien Renaut, Université de Montréal, Montreal, QC, Canada and Loren W194: Components of Apomixis H Rieseberg, University of British Columbia, Vancouver, BC, Canada Muller's Ratchet and Adaptation in Sympatric Sexual and Apomictic Boechera Lineages W198: Compositae 1 2 2 3 John T Lovell , Robert J Williamson , Stephen I Wright , John K McKay and Survey of Reproductive Barriers in an Interspecific Lettuce Hybrid Timothy F Sharbel4, (1)University of Texas, Austin, Austin, TX, (2)University of Toronto, Toronto, ON, Canada, (3)Colorado State University, Fort Collins, Marieke Jeuken, Plant Breeding, Wageningen University & Research, CO, (4)IPK Gatersleben, Gatersleben, Germany Wageningen, Netherlands

156 W199: Compositae W203: Computational Gene Discovery Developing Guayule (Parthenium argentatum A Gray) as a Commercial Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET Source of Natural Rubber: Germplasm Characterization, Genotyping, and and Augustus Genome Sequencing Simone Lange1, Katharina Hoff1, Alexandre Lomsadze2, Mark Borodovsky3 Daniel Ilut, Cornell University, Ithaca, NY and Mario Stanke1, (1)University of Greifswald, Greifswald, Germany, (2)Georgia institute of Technology, Atlanta, GA, (3)Georgia Institute of Technology, Atlanta, GA W200: Computational Gene Discovery

Chromosome-Scale Scaffolding of de novo Genome Assemblies Using Hi-C W204: Computational Gene Discovery Joshua N Burton and Ivan Liachko, University of Washington - Department of Integration of ab initio Gene Finding with Mapping of Homologous Genome Sciences, Seattle, WA Proteins

Alexandre Lomsadze, Georgia Institute of Technology, Atlanta, GA W201: Computational Gene Discovery

Annotation of Protein Coding Genes for Non-Model de-novo Sequenced Organisms W205: Computational Gene Discovery Automated Interpretation of Metabolic Capacity from Complete Genomes Anna Vlasova, Francisco Câmara Ferreira, Didac Santesmasses Ruiz, Mariotti Using KEGG Modules Marco and Roderic Guigo, Center for Genomic Regulation, Barcelona, Spain Minoru Kanehisa, Institute for Chemical Research, Kyoto University, Kyoto, Japan W202: Computational Gene Discovery

Complexity of Gene Landscape Beyond Model Organisms W206: Computational Gene Discovery Stephane Rombauts, Ghent University, Gent, Belgium and Yves Van de Peer, Proteogenomics of Cancer: Peptides to Events VIB Ghent University, Ghent, Belgium Seong W Cha, University of California San Diego, San Diego, CA

W207: Cool Season Legumes W210: Cool Season Legumes Fungal Phytotoxins and Ascochyta Blights of Cool Season Food Legumes The International Pea Genome Sequencing Project: Sequencing and Assembly Progresses Updates Wonyong Kim1, Tobin Peever1, George J Vandemark2 and Weidong Chen2, (1)Washington State University, Pullman, WA, (2)USDA-ARS Washington Mohammed-Amin Madoui1, Karine Labadie2, Jean-Marc Aury3, Clarice J State University, Pullman, WA Coyne4, Tom Warkentin5, Jonathan Kreplak6, Judith Lichtenzveig7, Jaroslav 8 9 10 2 Dolezel , Grégoire Aubert , Hélène Bergès , Patrick Wincker and Judith Burstin9, (1)CEA, Evry cedex, France, (2)CEA - Genoscope, Evry, France, W208: Cool Season Legumes (3)CEA-Genoscope, evry, France, (4)USDA ARS, Pullman, WA, (5)University Genotyping by Sequencing Reveals the Genetic Diversity of the USDA of Saskatchewan, Saskatoon, SK, Canada, (6)INRA, Dijon, France, (7)Curtin Pisum Diversity Collection University, WA, Australia, (8)Institute of Experimental Botany, Olomouc, Czech Republic, (9)INRA UMR1347, Dijon Cedex, France, (10)INRA - 1 2 2 2 William L Holdsworth , Yu Ma , Peng Cheng , Rebecca McGee , Clare CNRGV, Castanet Tolosan, France Coyne2, Michael A Gore1 and Michael Mazourek1, (1)Cornell University,

Ithaca, NY, (2)Washington State University, Pullman, WA W211: Cool Season Legumes

Back To The Future: Prospecting Wild Crop Relatives For Crop W209: Cool Season Legumes Improvement Of Chickpea Len Gen: The International Lentil Genome Sequencing Project R Varma Penmetsa, University of California Davis, Davis, CA Kirstin Bett1, Larissa Ramsay1, Crystal Chan1, Andrew G Sharpe2, Douglas R 3 4 5 6 7 Cook , R Varma Penmetsa , Peter Chang , Clarice J Coyne , Rebecca McGee , Dorrie Main7 and Albert Vandenberg1, (1)University of Saskatchewan, W212: Cool Season Legumes Saskatoon, SK, Canada, (2)National Research Council Canada, Saskatoon, SK, Comprehensive Genome Sequencing Analysis of 292 Cajanus Accessions Canada, (3)University of California at Davis, Davis, CA, (4)University of California, Davis, CA, (5)University of Southern California, Los Angeles, CA, Rachit K Saxena1, Hari D Upadhyaya1, Obarley Yu2, Changhoon Kim3, (6)USDA ARS, Pullman, WA, (7)Washington State University, Pullman, WA Abhishek Rathore1, Dong Seon3, Aamir W Khan1, Jihun Kim3, Shaun An2, G 4 1 2 5 3 Anuradha , Vinay Kumar , Wei Zhang , PS Dharmaraj , Bellbull Kim , Swapan K Datta6 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)Millennium Genomics Inc, Shenzhen, China, (3)MACROGEN Inc, Seoul, South Korea, (4)Acharaya NG Ranga Rao Agricultural University, Hyderabad, India, (5)University of Agricultural Sciences, ARS-Gulbarga, Raichur, India, (6)ICAR, New Dehli, India

157 W213: Cotton Genome Initiative (ICGI) W218: Cotton Genome Initiative (ICGI) CenH3 Evolution in Diploids and Polyploids of Three Angiosperm Genera 1-Minute Oral Presentations Rick Masonbrink, Joseph P Gallagher, Josef Jareczek, Simon Renny-Byfield, David Stelly, Texas A&M University, College Station, TX Lei Gong, Jonathan F Wendel and Corrinne E Grover, Iowa State University, Ames, IA W219: CSSA: Translational Genomics

Determinacy in Common Bean: Duplications, Redundancies, and Multiple W214: Cotton Genome Initiative (ICGI) Domestications Gene Conversion and Cotton Allotetraploid Evolution Paul Gepts1, Myoung-hai Kwak2, Dianne M Velasco1, Shelby Ellison3, Justin T Page, Brigham Young University, Provo, UT Tamara Iva Miller1 and Andrea Ariani1, (1)University of California, Davis, CA, (2)WGRC, National Institute of Biological Resouces, Incheon, South Korea, (3)Department of Horticulture, University of Wisconsin, Madison, WI W215: Cotton Genome Initiative (ICGI)

Comparison of Four Mitochondrial Genomes (Gossypium) and Analysis on the Candidate Genes of Two Cytoplasmic Male Sterile Lines in Cotton W220: CSSA: Translational Genomics Evaluating Genomic Selection in the First Two Cycles of a Winter Barley Jinping Hua, China Agricultural University, BEIJING 100193, China Breeding Program

Celeste Marie Falcon, University of Minnesota, St Paul, MN W216: Cotton Genome Initiative (ICGI)

DNA Methylation Dynamics during Fiber and Ovule Development W221: CSSA: Translational Genomics Qingxin Song, UT Austin, Austin, TX A Good Day to Flower: Environmental Dependent Genetic Control of Flowering Time in Common Bean W217: Cotton Genome Initiative (ICGI) Mehul Bhakta, Horticultural Sciences Department, Gainesville, FL Draft Genome of the High-Fibre-Quality Allotetraploid Cotton Gossypium barbadense Daojun Yuan, Huazhong Agricultural University, Wuhan, China

W222: CSSA: Translational Genomics W225: Cucurbit Orange Is the New Yellow: Cracking the Genetic Code Controlling Beta- Resemblance and Differences in the Feral (C lanatus subsp lanatus) and Carotene Accumulation in Carrot Cultivated Watermelon (C lanatus subsp vulgaris) Genomes Shelby L Ellison1, Massimo Iorizzo1, Douglas Senalik2 and Philipp W Simon3, Shaogui Guo1, Honghe Sun1, Jinbo Zhang2, Yi Ren1, Haiying Zhang1, Jie (1)University of Wisconsin-Madison, Madison, WI, (2)USDA-ARS, Madison, Zhang1, Guoyi Gong1, Ruiqiang Li2, Zhangjun Fei3 and Yong Xu1, (1)National WI, (3)USDA-ARS and University of Wisconsin-Madison, Madison, WI Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China, (2)Novogene Bioinformatics Institute, Beijing, China, (3)Boyce Thompson Institute for Plant Research, Ithaca, NY W223: CSSA: Translational Genomics

Mining Plant Collections Using Phenotyping and High-Throughput Sequencing for Accelerated Crop Improvement - a Case Study of the W226: Cucurbit Native American Bean Apios americana Genome Sequencing of Cucurbita Species Vikas Belamkar1, Nathan T Weeks2, Andrew D Farmer3, Scott R Kalberer2, Zhangjun Fei, Cornell University, Ithaca, NY 4 5 6 Jugpreet Singh , Alex Wenger , V Gautam Bhattacharya , William J Blackmon7 and Steven B Cannon2, (1)Iowa State University, Ames, IA, (2)USDA-ARS-CICGRU, Ames, IA, (3)National Center for Genome W227: Cucurbit Resources, Santa Fe, NM, (4)ORISE Fellow, USDA-ARS-CICGRU, Ames, Transcriptome-Based Ultra-High Resolution QTL Analysis of Fruit IA, (5)Independent Researcher, Lititz, PA, (6)Independent Researcher, Ithaca, Quality Traits in Melon NY, (7)Independent Researcher, Mechanicsville, VA Navot Galpaz1, Itay Gonda1, Doron Shem Tov2, Omer Barad3, Shery Lev1, 1 4 1 1 Galil Tzury , Zhangjun Fei , Vitaly Portnoy , Rotem Harel-Beja , Adi Doron- W224: CSSA: Translational Genomics Faigenboim5, Merav Kenigswald1, Einat Bar1, Eran Halperin2, Guy Kol6, 1 1 5 1 Genome Wide Association Study of Metabolites in Maize Yaakov (Kobi) Tadmor , Joseph Burger , Ari Schaffer , Efraim Lewinsohn , James Giovannoni7 and Nurit Katzir1, (1)Agricultural Research Organization Jianbing Yan, National Key Laboratory of Crop Genetic Improvement, (ARO), Newe Ya'ar Research Center, Israel, (2)Tel Aviv University, Tel Aviv, Huazhong Agricultural University, Wuhan, China Israel, (3)NRGENE LTD, Ness-Ziona, Israel, (4)Boyce Thompson Institute for Plant Research, Ithaca, NY, (5)Volcani Center, ARO, Bet Dagan, Israel, (6)NRGENE Ltd, Ness-Ziona, Israel, (7)USDA-ARS and Boyce Thompson Institute for Plant Research, Ithaca, NY

158 W228: Cucurbit W231: Cultivating Broader Impact Programs: Developing and Executing a Genome Wide Association (GWAS) Mapping of Trichome Density and Successful Program for Current and Future Grants Length in Watermelon Bridging the Gap with Undergraduate Internships: Pennsylvania State

1 1 2 University's Hardwood Genomics Outreach Component with the Abiodun Bodunrin , Thangasamy Saminathan , Padma Nimmakayala and University of West Alabama Umesh K Reddy2, (1)West Virginia State University, Institute, WV, (2)Department of Biology, West Virginia State University, Institute, WV Ketia Shumaker, The University of West Alabama, Livingston, AL

W229: Cucurbit W232: Cultivating Broader Impact Programs: Developing and Executing a Sequencing and Assembly of the Genome of an American Watermelon Successful Program for Current and Future Grants Ecotype, Charleston Gray SOYMAP II: Nurturing Successful Relationships that Highlight Plant Research, Cultural Diversity and Collaboration Linyong Mao1, Honghe Sun1, Yi Zheng1, Chen Jiao1, Patrick Wechter2, Kai- Shu Ling2, Yaakov (Kobi) Tadmor3, Nurit Katzir3, Alvaro Hernandez4, Padma Michael D Gonzales, University of Georgia, Albuquerque, NM 5 5 6 6 2 Nimmakayala , Umesh K Reddy , Shaogui Guo , Yong Xu , Amnon Levi and Zhangjun Fei1, (1)Boyce Thompson Institute for Plant Research, Ithaca, NY, (2)USDA-ARS, Charleston, SC, (3)Agricultural Research Organization, Newe W233: Cultivating Broader Impact Programs: Developing and Executing a Ya'ar Research Center, Ramat Yishay, Israel, (4)Roy J Carver Biotechnology Successful Program for Current and Future Grants Center, Urbana, IL, (5)Department of Biology, West Virginia State University, Perspectives on Broader Impacts Institute, WV, (6)National Engineering Research Center for Vegetables, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China Diane Jofuku Okamuro, National Science Foundation, Arlington, VA

W230: Cucurbit W234: Degraded DNA and Paleogenomics A Major QTL Is Associated with Fusarium Wilt Race 1 Resistance in How Do You Know When You Don't Have Any Ancient DNA? Watermelon Ian Barnes, Natural History Museum, London, United Kingdom 1 1 1 1 Shaunese Lambel , Brenda Lanini , Elisabetta Vivoda , Julie Fauve , Patrick Wechter2, Karen Harris3, Laura Massey4 and Amnon Levi4, (1)HM CLAUSE W235: Degraded DNA and Paleogenomics Seed Company, Davis, CA, (2)USDA-ARS, Cherleston, SC, (3)USDA, ARS,, TIFTON, GA, (4)USDA, ARS, US Vegetable Laboratory, Charleston, SC The Best Bones, Imputation and Ancient Genomics Daniel G Bradley, Trinity College Dublin, Dublin, Ireland

W236: Degraded DNA and Paleogenomics W239: Degraded DNA and Paleogenomics Time, Temperature, and Tiling Density When Capturing Ancient DNA Resolving the Evolutionary Relationships of Two Enigmatic Ungulates from Pleistocene North America Jake Enk, Biodiscovery, LLC (dba MYcroarray), Ann Arbor, MI 1 2 1 Peter D Heintzman , Grant Zazula and Beth Shapiro , (1)Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa W237: Degraded DNA and Paleogenomics Cruz, CA, (2)Government of Yukon, Department of Tourism and Culture, Ancient DNA: From Genomes to Epigenomes Whitehorse, YT, Canada

Ludovic Orlando, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark W240: Degraded DNA and Paleogenomics Direct Evidence of Milk Consumption from Ancient Human Dental Calculus W238: Degraded DNA and Paleogenomics Genomic Diversity and Population Dynamics of the Woolly Mammoth Christina Warinner, Dr Christina Warinner - University of Oklahoma - Prior to Its Extinction Department of Anthropology, Norman, OK

1 2 2 3 Eleftheria Palkopoulou , Swapan Mallick , Pontus Skoglund , Jake Enk , Nadin Rohland4, Heng Li5, Ayca Omrak6, Sergey Vartanyan7, Hendrik Poinar8, W241: Degraded DNA and Paleogenomics 6 2 1 Anders Götherström , David Reich and Love Dalen , (1)Swedish Museum of A Palaeometagenomic Approach to Track the Neolithisation of Northern Natural History, Stockholm, Sweden, (2)Department of Genetics, Harvard Europe Medical School, Boston, MA, (3)Biodiscovery, LLC (dba MYcroarray), Ann Arbor, MI, (4)Department of Genetics Harvard Medical School, Boston, MA, Robin G Allaby, University of Warwick, Warwick, United Kingdom (5)Broad Institute of MIT and Harvard, Cambridge, MA, (6)Department of Archaeology and Classical Studies, Stockholm University, Stockholm, Sweden, (7)North-East Interdisciplinary Scientific Research Institute N A N A Shilo, Far W242: Development and Application of Transgenic Technology in Agriculture East Branch, Russian Academy of Sciences (NEISRI FEB RAS), Magadan, Gene Editing in Plants using CRISPR/Cas and TALENs Russia, (8)McMaster Ancient DNA Centre, Department of Anthropology, McMaster University, Hamilton, ON, Canada Jian-Kang Zhu, Purdue University, West Lafayette, IN

159 W243: Development and Application of Transgenic Technology in Agriculture W248: Domestication Genomics Lessons Learnt from Transgenic Gene Pyramiding for Classical Resistance Loci Involved in Domestication and Improvement of Cultivated Potato As Breeding in Wheat Revealed through Genotyping of Two Diversity Panels Beat Keller1, Severine Hurni2 and Daniel Stirnweis1, (1)University of Zurich, C Robin Buell1, Michael Hardigan1, John Bamberg2 and David Douches1, Zurich, Switzerland, (2)University of Zürich, Zurich, Switzerland (1)Michigan State University, East Lansing, MI, (2)USDA ARS, Sturgeon Bay, WI W244: Development and Application of Transgenic Technology in Agriculture Plant Genome Editing and Precision Breeding with CRISPR-Cas9 System W249: Domestication Genomics Yeast Yinong Yang, Pennsylvania State University, University Park, PA Justin Fay, Washington University School of Medicine, St Louis, MO W245: Development and Application of Transgenic Technology in Agriculture Sanding the Rough Edges: In Search of Enhanced Performance of W250: Domestication Genomics Engineered Enzymes in Transgenic Systems The Origin of Orange Pigment in Carrot Jay Shockey, USDA-ARS, Southern Regional Research Center, New Orleans, Shelby L Ellison1, Massimo Iorizzo1, Douglas Senalik2 and Philipp W Simon3, LA (1)University of Wisconsin-Madison, Madison, WI, (2)USDA-ARS, Madison, WI, (3)USDA-ARS and University of Wisconsin-Madison, Madison, WI W246: Development and Application of Transgenic Technology in Agriculture Targeted Mutagenesis of the Tomato Procera Gene Using TALENs W251: Domestication Genomics Maize and Teosinte Vai Lor, University of Minnesota, St Paul, MN Matthew Hufford, Iowa State University, Ames, IA W247: Domestication Genomics The Consequence of Domestication in the Common Bean Roberto Papa, Università Politecnica delle Marche, Ancona, Italy

W252: Domestication Genomics W256: Ecological Genomics Admixture and Selection after Initial Domestication of Cattle Genomics of Adaptation and Diversificaiton in Cannabis

Jared E Decker1, Jinming Huang2, Miranda L Wilson3, Tara Fountain3, Nolan Kane, University of Colorado, Boulder, CO 1 4 5 Lynsey Whitacre , Luciana CA Regitano , Robert D Schnabel and Jeremy F Taylor5, (1)University of Missouri, Columbia, MO, (2)Shandong Academy of Agricultural Sciences, Jinan, China, (3)University of Missouri, COLUMBIA, W257: Ecological Genomics MO, (4)Embrapa Southeast Livestock, São Carlos, Brazil, (5)Division of Understanding Climate Adaptation through Genome-Wide Patterns of Animal Sciences, University of Missouri, Columbia, MO Differentiation and Local Selection in Populus balsamifera How Important Are Peripheral Populations? W253: Ecological Genomics Vikram Chhatre1, Matthew Fitzpatrick2 and Stephen Keller1, (1)University of Biochar Alters the Soil Microbiome: Results from Amplicon Surveys of Vermont, Burlington, VT, (2)University of Maryland Center for Environmental Three European Field Sites Sciences, Frostburg, MD

Gail Taylor and Joseph Jenkins, University of Southampton, Southampton, United Kingdom W258: DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom

Simplifying Genome Annotation and Examples of Large-Scale Projects in W254: Ecological Genomics DNA Barcoding (Red and Blue Lines) Patterns of Gene Loss in Population Genomic Data - Identifying Disposable Genes Dave Micklos, DNA Learning Center, Cold Spring Harbor, NY

Jacqueline Batley, University of Western Australia, Crawley, Australia W259: DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom W255: Ecological Genomics Transposable Elements, Gene Discovery, and DNA Barcoding (Yellow Ecological Genomics of Native and Invading Yellow Starthistle and Its and Blue Lines) Biocontrol Insect James Burnette, University of California, Riverside, Riverside, CA Brittany Barker, University of Arizona, Tucson, AZ

160 W260: DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy W263: Engineering NUE for the Undergraduate Classroom Increasing Biomass Production with Reduced Inputs in Non-Legume Bringing Authentic Genomics Research into the Classroom: Analysis of Crops Using N-Fixing Endophytes of Poplar Maize Stress Response (Green Line) Sharon L Doty1, Zareen Khan1, Andrew W Sher2, Mahsa Khorasani1, Neil D Irina Makarevitch, Hamline University, Saint Paul, MN Fleck1, Shyam Kandel1, Jenny L Knoth1, Amy S Baum1, Thomas H DeLuca1 1 and Soo-Hyung Kim , (1)University of Washington, Seattle, WA, (2)University of California San Diego, San Diego, CA W261: DNA Subway: Genomics, DNA Barcoding, and RNA-Seq Made Easy for the Undergraduate Classroom Large Dataset Analysis for Undergraduates: Discovery Environment, W264: Engineering NUE RNA-Seq and Leaf Senescence in Arabidopsis thaliana (Green Line) Nitrogen Utilization and Remobilization in Arabidopsis Under Nitrogen Depletion Judy A Brusslan, California State University, Long Beach, Long Beach, CA Adel Zayed, Monsanto Company, Chesterfield, MO and Robert Crosby, Monsanto, RTP, NC W262: Engineering NUE

Assessing Nitrogen Metabolism Using Genome-Scale Models in Maize W265: Engineering NUE 1 2 3 1 Margaret Simons , Rajib Saha , Nardjis Amiour , Akhil Kumar , Lena!g Deciphering the Genetic Control of Yield and Yield Components of Winter Guillard3, Gilles Clément3, Martine Miquel3, Zhenni Li3, Grégory Mouille3, 4 3 1 Oilseed Rape (Brassica napus L) Grown Under Nitrogen Constraints with Peter J Lea , Bertrand Hirel and Costas D Maranas , (1)The Pennsylvania Combined Linkage and Association Analyses State University, University Park, PA, (2)Washington University in St Louis, St Louis, MO, (3)Institut Jean-Pierre Bourgin, Institut National de la Recherche Anne-Sophie Bouchet1, Anne Laperche2, Christine Bissuel3 and Nathalie Agronomique, Versailles, France, (4)Lancaster University, Lancaster, United Nesi1, (1)INRA IGEPP, Le Rheu, France, (2)AGROCAMPUS OUEST, Kingdom Rennes, France, (3)AGROCAMPUS OUEST, le Rheu, France

W266: Engineering NUE Nitrogen Influence on Lateral Root Development of Brassicaceae Species Christian Hermans, Hugues De Gernier, Jérôme De Pessemier, Laszlo Kupcsik and Jiajia Xu, Université Libre de Bruxelles, Brussels, Belgium

W267: EPIC: the Plant Epigenome Project W272: Equine 1 Chromatin Dynamics during DNA Replication CYP7A1 is Significantly Upregulated in Spinal Cord from Horses Affected with Equine Neuroaxonal Dystrophy (NAD) Linda Hanley-Bowdoin1, Emily E Wear1, Jawon Song2, Chantal LaBlanc3, Tae-Jin Lee1, Matt Vaughn2, Robert Martienssen3, George C Allen1 and Carrie J Finno, University of California Davis, Davis, CA 1 William F Thompson , (1)NC State University, Raleigh, NC, (2)Texas Advanced Computing Center, Austin, TX, (3)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY W273: Equine 2 Equine Genome Resources at National Center for Biotechnology Information W268: EPIC: the Plant Epigenome Project 1 1 2 A Genome-Wide Epigenetic Study of Hexaploid Wheat Shashikant Pujar , Bhanu Rajput , Francoise Thibaud-Nissen , Terence D Murphy2, Paul Kitts3 and Kim D Pruitt2, (1)NCBI, National Institutes of Laura Gardiner, Mark Quinton-Tulloch, Lisa Olohan, Jonathan Price, Neil Health, Bethesda, MD, (2)National Center for Biotechnology Information Hall and Anthony Hall, University of Liverpool, Liverpool, United Kingdom (NCBI/NLM/NIH), Bethesda, MD, (3)NIH/NLM/NCBI, Bethesda, MD

W269: Equine 1 W274: Equine 2 Genomic Signatures of Selection in the American Quarter Horse Galloping into the future: how we could create reference genomes for many horse breeds at about $30K each Felipe Avila, Department of Veterinary Population Medicine, University of Minnesota, St Paul, MN David B Jaffe, Broad Institute, Cambridge, MA

W270: Equine 1 W275: Equine 2 SERPINB11 Mutation Associated with Novel Hoof Specific Phenotype in Toward a high quality reference genome map of the domestic horse with Connemara Ponies whole genome physical mapping and the integration of genome sequence Danika Bannasch, University of California Davis, Davis, CA Bin LIU, Ceter of Systematic Genomics, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, Xinjiang, China W271: Equine 1 Involvement of CNVs in Equine Cryptorchidism

Sharmila Ghosh, Texas A&M University, College Station, TX

161 W276: Equine 2 W280: Evolution of Genome Size Work Toward EquCab3: A New Reference Genome Sequence for the Concerted Evolution of Subgenomes in Polyploids Domestic Horse Andrew H Paterson1, Hui Guo2, Xiyin Wang1, Daniel G Peterson3 and Boulos Theodore S Kalbfleisch, University of Louisville, Louisville, KY Chalhoub4, (1)Plant Genome Mapping Laboratory, University of Georgia, Athens, GA, (2)University of Georgia, Athens, GA, (3)Mississippi State University, Starkville, MS, (4)URGV-INRA, Evry, France W277: Equine 2

Selection of Tagging SNPs and Imputation Efficiency of the 670K Commercial SNP Chip W281: Evolution of Genome Size TBD Robert Schaefer, University of Minnesota, St Paul, MN Joshua A Udall, Brigham Young University, Provo, UT W278: Equine 2 Update on NRSP8 Activities W282: Evolution of Genome Size TBD James M Reecy, Department of Animal Science, Iowa State University, Ames, IA Christopher A Saski, Clemson University Genomics Institute, Clemson, SC

W279: Evolution of Genome Size W283: Evolution of Genome Size Small RNA-Transposable Elements Interactions in Animal Genome Examining the Coevolution of Genome Sizes, GC contents, and Gene Evolution Direction David A Ray1, Roy N Platt1, Federico G Hoffmann2, Michael W Vandewege2, Xiu-Qing Li, Agriculture and Agri-Food Canada, Fredericton, NB, Canada 3 3 Carl J Schmidt and Colin Kern , (1)Texas Tech University, Lubbock, TX, (2)Mississippi State University, Mississippi State, MS, (3)University of Delaware, Newark, DE W284: Exploring Phytobiomes Phytobiomes and Plant Health: Science and Policy Jan E Leach, Colorado State University, Fort Collins, CO, Kellye Eversole, IWGSC, Bethesda, MD, Gwyn A Beattie, Iowa State University, Ames, IA and Angela Records, USAID, Washington, DC

W285: Exploring Phytobiomes W290: Flax Genomics Phytobiome, a New View of Crop Production - an Industry Perspective Variation in the Flax Genome and Its Application to Bioproducts

Magalie Guilhabert and Varghese Thomas, Bayer CropScience, Biologics, Michael Deyholos1, Leonardo Galindo2 and David Pinzon-Latorre2, West Sacramento, CA (1)University of British Columbia, Kelowna, BC, Canada, (2)University of Alberta, Edmonton, AB, Canada W286: Exploring Phytobiomes Exploring the Oomycete Microbiome Associated with Soybean Seedling W291: Flax Genomics Diseases in the US The Refined Flax Genome, Its Evolution and Applications

Martin Chilvers and J Alejandro Rojas, Michigan State University, East Frank M You1, Pingchuan Li1, Santosh Kumar2, Raja Ragupathy3, Mitali Lansing, MI Banik1, Scott Duguid1, Helen Booker4, Michael Deyholos5, Yong-Bi Fu6, 7 8 Andrew G Sharpe and Sylvie Cloutier , (1)Agriculture and Agri-Food Canada, Morden, MB, Canada, (2)Agriculture and Agri-Food Canada, Brandon, MB, W287: Exploring Phytobiomes Canada, (3)Department of Plant Science, University of Manitoba, Winnipeg, Mediation of Induced Plant Defenses by the Symbionts of Insect MB, Canada, (4)University of Saskatchewan, Saskatoon, SK, Canada, Herbivores (5)University of British Columbia, Kelowna, BC, Canada, (6)Agriculture and Agri-Food Canada, Saskatoon, SK, Canada, (7)National Research Council Gary Felton, Pennsylvania State University, University Park, PA Canada, Saskatoon, SK, Canada, (8)Agriculture and Agri-Food Canada, Ottawa, ON, Canada W288: Exploring Phytobiomes Characterizing the Microbiome Across the Gastrointestinal Tract from W292: Flax Genomics Steers Differing in Feed Efficiency The Flax Genome, a Revolution in Evolution Phillip Myer, James E Wells, Timothy PL Smith, Larry A Kuehn and Harvey Christopher Cullis, Case Western Reserve University, Cleveland, OH C Freetly, USDA-ARS, US Meat Animal Research Center, Clay Center, NE

W289: Exploring Phytobiomes Understanding Beneficial and Pathogenic Microorganisms Impacting Production of Forage Crops Carolyn Young, The Samuel Roberts Noble Foundation, Ardmore, OK

162 W293: Flax Genomics W296: Forage, Feedstocks & Turf EMS Mutants and Functional Genomics to Dissect Cell Wall Biology in GBS-Based Yield Selection in Alfalfa: Now We're Getting Flax SomewhereAren't We? Simon W Hawkins1, Maxime Chantreau1, Wout Boerjan2, Arata Yoshinaga3, E Charles Brummer1, Xuehui Li2, Yanling Wei1, Ananta Acharya3, Don François Mesnard4 and Brigitte Chabbert5, (1)University of Lille 1, Villeneuve Viands4, Julie Hansen4, Annie Claessens5, Réal Michaud5, Paolo d'Ascq, France, (2)Department of Plant Systems Biology, VIB, Gent, Belgium, Annicchiarico6 and Nelson Nazzicari6, (1)University of California, Davis, (3)Kyoto University, Kyoto, Japan, (4)Université de Picardie Jules Verne, Davis, CA, (2)Samuel Roberts Noble Foundation, Ardmore, OK, (3)University Amiens, France, (5)INRA URCA UMR614 FARE, Reims, France of Georgia, Athens, GA, (4)Cornell Univ, Ithaca, NY, (5)Agriculture and Agri- Food Canada, Québec, QC, Canada, (6)Agricultural Research Council (CRA), Lodi, Italy W294: Flax Genomics

Genome Wide Association Study (GWAS) of Yield-Related Traits in Flax W297: Forage, Feedstocks & Turf Braulio Soto-Cerda1, Scott Duguid2, Helen Booker3, Frank M You2, Gordon 3 4 Genomic Selection in Perennial Ryegrass: Results from Empirical and Rowland and Sylvie Cloutier , (1)Agriaquaculture Nutritional Genomic Center Simulation Studies (CGNA), Temuco, Chile, (2)Agriculture and Agri-Food Canada, Morden, MB, Canada, (3)University of Saskatchewan, Saskatoon, SK, Canada, Hans D Daetwyler1, Zibei Lin1, Luke Pembleton1, Hiroshi Shinozuka1, (4)Agriculture and Agri-Food Canada, Ottawa, ON, Canada Junping Wang2, John Forster1, Ben Hayes1, German Spangenberg3 and Noel O 1 I Cogan , (1)Department of Environment and Primary Industries, Bundoora, Australia, (2)Department of Environment and Primary Industries, Hamilton, W295: Flax Genomics Australia, (3)Department of Environment and Primary Industries, Bundoora, Diversity and Characters in Ethiopian Linseed Accessions Victoria, Australia

Worku Negash Mhiret,, University of Gondar, Gondar, Ethiopia and Pat Heslop-Harrison, University of Leicester, Leicester, Leic, United Kingdom W298: Forage, Feedstocks & Turf Understanding Tall Fescue Endophytes through Genotypic and Chemotypic Diversity Carolyn Young, The Samuel Roberts Noble Foundation, Ardmore, OK

W299: Forage, Feedstocks & Turf W303: Forest Tree Sequence-Tagged High-Density Genetic Maps of Zoysia japonica Provide Exploiting Genome Variation to Improve Next-Generation Sequencing New Insights into Chloridoideae Genome Evolution Data Analysis and CRISPR gRNA Design in Populus tremula x alba 717- 1B4 Fangfang Wang, Ratnesh Singh, Dennis Genovesi, Ambika Chandra and Qingyi Yu, Texas A&M AgriLife Research, Dallas, TX Liang-Jiao Xue, Mohammad Mohebbi, Patrick Breen, Xi Gu, Magdy S Alabady, Scott A Harding and Chung-Jui Tsai, University of Georgia, Athens, GA W300: Forage, Feedstocks & Turf

Exploration and Exploitation of Disease Resistance in Ryegrass W304: Forest Tree Roland Kölliker1, Verena Knorst1, Beat Boller1, Bruno Studer2, Torben Asp3, 3 1 Developing Genomic Resources for Green Ash through Deep Stephen Byrne and Franco Widmer , (1)Agroscope Institute for Sustainability Transcriptome Sequencing and Low-Coverage Whole Genome Sequencing Sciences, Zurich, Switzerland, (2)Swiss Federal Institute of Technology, Zuerich, Switzerland, (3)Aarhus University, Slagelse, Denmark Thomas Lane1, Jack Davitt1, Mark Cook1, Nate Henry1, Teodora Orendovici- 2 2 3 4 5 Best , Nicole Zembower , Jennifer Koch , Mark Coggeshall , John E Carlson and Margaret Staton1, (1)University of Tennessee Institute of Agriculture, W301: Forage, Feedstocks & Turf Knoxville, TN, (2)Pennsylvania State University, University Park, PA, (3)The The Role of Fructan for Cold Stress Tolerance in Grasses US Forest Service, Delaware, OH, (4)University of Missouri, Columbia, MO, (5)Penn State University, University Park, PA Toshihiko Yamada, Hokkaido University, Sapporo, Hokkaido, Japan

W305: Forest Tree W302: Forest Tree High-Resolution Genetic Maps of Eucalyptus Hybrids Improve E grandis Silver Birch - a Model for Tree Genetics? Genome Assembly and Give Insight into Genes Associated with Carbon Isotope Composition Jarkko T Salojärvi, University of Helsinki, Helsinki, Finland 1 1 2 3 Jérôme Bartholomé , Eric Mandrou , André Mabiala , Jerry Jenkins , Oliver Brendel4, Christophe Plomion5 and Jean-Marc Gion1, (1)INRA, Cestas, France, (2)CRDPI, Pointe-Noire, Congo-Brazzaville, (3)DOE Joint Genome Institute, Huntsville, AL, (4)INRA NANCY-Lorraine, Nancy, France, (5)INRA,BIOGECO, UMR 1202, Bordeaux, France

163 W306: Forest Tree W309: Forest Tree Combinatorial Regulation of Gene Expression in the Vascular Cambium Identifying Genes Controlling Complex Traits in Forest Trees via Network of Populus trichocarpa Construction and Decomposition Matthew S Zinkgraf1, Lijun Liu1, Trevor Ramsay2, Vladimir Filkov2 and Hairong Wei, Michigan Technological University, Houghton, MI 1 Andrew Groover , (1)US Forest Service, Davis, CA, (2)UC Davis, Davis, CA W310: Forest Tree W307: Forest Tree Genome-Wide Discovery of Non-Coding RNAs in Willow (Salix purpurea) Transcriptional and Hormonal Control of Gravitropism and Tension Wood Formation in Populus Xiaohan Yang, Hengfu Yin and Gerald A Tuskan, Oak Ridge National Laboratory, Oak Ridge, TN 1 2 2 Andrew Groover , Suzanne Gerttula , Matthew Zinkgraf , Shawn D Mansfield3 and Vladimir Filkov4, (1)US Forest Service, Davis, CA, (2)USDA Forest Service, Davis, CA, (3)Department of Forestry, University of British W311: Forest Tree Columbia, Vancouver, BC, Canada, (4)UC Davis, Davis, CA TreeGenes: A Comprehensive Resource for Forest Tree Genomics

Emily Grau, UC Davis, Davis, CA, Hans Vasquez-Gross, University of W308: Forest Tree California Davis, Davis, CA, John Liechty, Department of Plant Sciences, Adaptation to Drought in Populus: Is Leaf Growth a Key Trait? University of California, Davis, Davis, CA, Jacob Zieve, University of California, Davis, Davis, CA, Damian Gessler, University of Arizona, Santa Hazel Katherine Smith1, Henning Wildhagen2, Maud Viger1, Billy Valdes- Fe, AZ, David Neale, Dept Plant Sciences University of California, Davis, CA Fragoso1, Cyril Douthe3, David Cohen4, Oliver Brendel4, Didier Le Thiec4, and Jill Wegrzyn, Department of Ecology and Evolutionary Biology, Joao Paulo5, Sabine Schnabel5, Simone Scalabrin6, Federica Cattonaro6, Dennis University of Connecticut, Storrs, CT 2 7 8 7 7 Janz , Susanna Pollastri , Simon Rüger , Mauro Centritto , Francesco Loreto , Joost JB Keurentjes5, Fred E van Eeuwijk5, Michele Morgante9, Jaume Flexas3, Marie-Béatrice Bogeat-Triboulot4, Andrea Polle2 and Gail Taylor1, (1)University of Southampton, Southampton, United Kingdom, (2)Georg- August-University Göttingen, Göttingen, Germany, (3)Universitat de les Illes Belears, Palma, Spain, (4)INRA NANCY-Lorraine, Nancy, France, (5)Biometris, Wageningen UR Plant Science Group, Wageningen, Netherlands, (6)IGA Technology Services, Udine, Italy, (7)Consiglio Nazionale delle Ricerche, Florence, Italy, (8)YARA ZIM Plant Technology GmbH, Hennigsdorf, Germany, (9)Università di Udine, Udine, Italy

W312: Forest Tree W315: Forest Tree The Hardwood Genomics Project: Outcomes and Future Directions after Transcriptome Variation in Shrub Willow (Salix) Hybrids Four Years of Resource Development Craig H Carlson1, Agnes P Chan2, Christopher D Town2, Vivek Margaret Staton1, Teodora Orendovici-Best2, Nicole Zembower2, Thomas Krishnakumar2, Haibao Tang2, Stephen DiFazio3, Michelle Serapiglia4 and Lane1, Jack Davitt1, Tatyana Zhebentyayeva3, Mark Coggeshall4, Oliver Lawrence Smart1, (1)Cornell University, Geneva, NY, (2)J Craig Venter Gailing5, Haiying Liang3, Jeanne Romero-Severson6, Christopher A Saski7, Institute, Rockville, MD, (3)West Virginia University, Morgantown, WV, Scott Schlarbaum8, Ketia Shumaker9, Nicholas Wheeler10 and John E (4)USDA Sustainable Biofuels and Co-Products, Wyndmoor, PA 11 Carlson , (1)University of Tennessee Institute of Agriculture, Knoxville, TN, (2)Pennsylvania State University, University Park, PA, (3)Clemson University, Clemson, SC, (4)University of Missouri, Columbia, MO, (5)Michigan W316: Forest Tree Technological University, Houghton, MI, (6)University of Notre Dame, Notre Improving Poplar for Biofuel Applications: Elucidating the Genetic Basis Dame, IN, (7)Clemson University Genomics Institute, Clemson, SC, of Important Traits in Populus nigra through an Association Genetics (8)University of Tennessee, Knoxville, TN, (9)The University of West Approach in a Natural, Wide Mapping Population Alabama, Livingston, AL, (10)Pennsylvania State University, Centralia, WA, 1 1 2 (11)Penn State University, University Park, PA Mike Allwright , Hazel Katherine Smith , Giovanni Emiliani , Adrienne Payne1, Maud Viger1, Giorgio Alberti3, Alessandro Zaldei4, Davide Scaglione5, 6 1 1 7 Simone Scalabrin , Billy Valdes-Fragoso , Franchesca Rouse , Joao Paulo , W313: Forest Tree Fred E van Eeuwijk7, Patricia Faivre Rampant8, Michele Morgante9 and Gail 1 The Genome of Fraxinus excelsior (European ash) Taylor , (1)University of Southampton, Southampton, United Kingdom, (2)CNR-IVALSA, Trees and Timber Institute, Florence, Florence, Italy, Elizabeth Sollars1, Laura J Kelly1, Bernardo Clavijo2, David Swarbreck2, (3)Università Di Udine, Udine, Italy, (4)CNR - Institute for Biometeorology, Jasmin Zohren1, David Boshier3, Jo Clark4, Anika Joecker5, Sarah Ayling2, Florence, Italy, (5)Parco Tecnologico Padano, Milan, Italy, (6)IGA Technology Mario Caccamo2 and Richard Buggs1, (1)Queen Mary University of London, Services, Udine, Italy, (7)Biometris, Wageningen UR Plant Science Group, London, United Kingdom, (2)The Genome Analysis Centre, Norwich, United Wageningen, Netherlands, (8)INRA Evry, Evry, France, (9)Università di Kingdom, (3)University of Oxford, Oxford, United Kingdom, (4)The Earth Udine, Udine, Italy Trust, Abingdon, United Kingdom, (5)Qiagen Aarhus, Aarhus C, Denmark

W314: Forest Tree Coupling Metabolomics, mQTL and Association Genetics Analyses to Identify Genes Regulating the Production of Metabolites

164 W317: Forest Tree W320: Forest Tree Contrasting Genomic Signatures of Local Adaptation in Lodgepole Pine Evidence That Allelic Introgression from Populus balsamifera (balsam (Pinus contorta) and Interior Spruce (Picea glauca x Picea engelmannii) poplar) Underlies Local Adaptation in P trichocarpa (black cottonwood) Sam Yeaman1, Kathryn A Hodgins2, Katie Lotterhos3, Haktan Suren4, Tongli Adriana Suarez-Gonzalez1, Camille Christe2, Armando Geraldes1, Charles A Wang1, Pia Smets1, Kristin Nurkowski2, Jason Holliday4, Michael C Whitlock1, Hefer1, Christian Lexer2, Quentin C B Cronk1 and Carl Douglas1, Loren H Rieseberg1, Andreas Hamann5 and Sally N Aitken1, (1)University of (1)Department of Botany, University of British Columbia, Vancouver, BC, British Columbia, Vancouver, BC, Canada, (2)Monash University, Melbourne, Canada, (2)University of Fribourg, Fribourg, Switzerland Australia, (3)Wake Forest University, Winston-Salem, NC, (4)Virginia Tech University, Blacksburg, VA, (5)University of Alberta, Edmonton, AB, Canada W321: Fruit/Nuts

Welcome W318: Forest Tree Adaptive Gene-Environment Associations in Populus flowering Time Herman Silva, Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Genes: New Insights from the Southern Range Edge of Balsam Poplar Santiago, Chile

Stephen Keller, University of Vermont, Burlington, VT W322: Fruit/Nuts

GDR: A Community Database for Rosaceae Genomics, Genetics and W319: Forest Tree Breeding Research Differential Genetic Adaptation to Climate within and Between Two Picea species (P mariana and P glauca) Dorrie Main, Washington State University, Pullman, WA

Benjamin Hornoy1, Nathalie Pavy1, Sébastien Gérardi1, Jean Beaulieu2 and Jean Bousquet1, (1)Université Laval, Québec, QC, Canada, (2)Canadian Wood W323: Fruit/Nuts Fibre Centre, Natural Resources Canada, Québec, QC, Canada Coupling Gene to Function in Strawberry (Fragaria spp)

Kevin M Folta, Jeremy Pillet and Alan Chambers, University of Florida, Gainesville, FL

W324: Fruit/Nuts W326: Fruit/Nuts Combined Genetic, Genomic and Physiological Approaches to The Peach v20 Release: An Improved Genome Sequence for Bridging the Characterize Flowering in Fragaria Gap Between Genomics and Breeding in Prunus Amèlia Gaston1, J Perrotte2, T Tenreira3, MN Démene4, A Potier3, Aurélie Ignazio Verde1, Shengqiang Shu2, Jerry Jenkins3, Andrea Zuccolo4, Maria Petit5, Y Guédon6, C Godin6, Christophe Rothan1 and Béatrice Denoyes7, Teresa Dettori1, Christopher Dardick5, Laura Rossini6, Jane Grimwood3, Raul (1)INRA UMR, Villenave d'Ornon, France, (2)Ciref, Douville, France, Pirona7, David M Goodstein2, Luca Dondini8, Elisa Vendramin1, Pedro (3)INRA, Villenave d’Ornon, France, (4)Invenio, Douville, France, (5)Ciref Martínez-Gómez9, Herman Silva10, Sabrina Micali1, Rachele Falchi11, Simone Création Variétale Fraises Fruits Rouges, Douville, France, (6)CIRAD, Scalabrin12, Daniele Bassi13, Dorrie Main14, Ariel Orellana15, Giannina Montpellier, France, (7)INRA UMR 1332 - FRANCE, Villenave d'Ornon Vizzotto11, Stefano Tartarini8, Lee Meisel16, Albert G Abbott17, Michele cedex, France Morgante18, Daniel S Rokhsar2 and Jeremy Schmutz3, (1)Consiglio per la Ricerca e la sperimentazione in Agricoltura - Fruit Tree Research Center, Roma, Italy, (2)DOE Joint Genome Institute, Walnut Creek, CA, W325: Fruit/Nuts (3)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (4)Institute of Molecular Events Taking Place during Ripening of Fragaria chiloensis Life Sciences, Scuola Superiore Sant'Anna,, Pisa, Italy, (5)AFRS-ARS, USDA, Fruit Kearneysville, WV, (6)Parco Tecnologico Padano, Lodi, Italy, (7)Istituto di Biologia e Biotecnologia Agraria, CNR, Milano, Italy, (8)Università di Maria A Moya-León and Raul Herrera, Institute of Biological Sciences - Bologna, Bologna, Italy, (9)Department of Plant Breeding, CEBAS-CSIC, University of Talca, Talca, Chile Espinardo, Spain, (10)Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile, (11)Dipartimento di Scienze Agrarie e Ambientali Università degli Studi di Udine, Udine, Italy, (12)IGA Technology Services, Udine, Italy, (13)University of Milano, Milano, Italy, (14)Washington State University, Pullman, WA, (15)Centro de Biotecnologia Vegetal, Universidad Andres Bello, Santiago, Chile, (16)INTA - U de Chile, Macul, Chile, (17)Clemson University, Clemson, SC, (18)Università di Udine, Udine, Italy

W327: Fruit/Nuts Break Herman Silva, Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile

165 W328: Fruit/Nuts W331: Fruit/Nuts Refining the Genomic Region Containing a Major Locus Controlling Fruit Parallel Sequencing of Barcoded BAC Clones to Assist and Validate Maturity in Peach Kiwifruit Genome Assemblies Hanny Elsadr, University of Guelph, Guelph, ON, Canada, Travis Banks, Elena Hilario1, Marcus Davy2, Roy Storey2, Richard D Newcomb1, Ross N Vineland Research and Innovation Centre, Vineland Station, ON, Canada, Crowhurst1 and Roger P Hellens3, (1)The New Zealand Institute for Plant & Daryl J Somers, Vineland Research and Innovation Centre, Vineland, ON, Food Research Limited, Auckland, New Zealand, (2)The New Zealand Institute Canada and Jayasankar Subramanian, University of Guelph/Vineland Station, for Plant & Food Research Limited, Te Puke, New Zealand, (3)Queensland Vineland, ON, Canada University of Technology, Brisbane, Australia

W329: Fruit/Nuts W332: Fruit/Nuts Apple Breeding and Postharvest in the Post-Genomic Era The Genome Sequence of Walnut (Juglans regia L) cv “Chandler” Mario Di Guardo1, Alice Tadiello1, Nicola Busatto2, Brian Farneti2, Franco Pedro J Martínez-García1, Marc Crepeau2, Daniela Puiu3, Daniel Gonzalez- Biasioli1, Guglielmo Costa2, Riccardo Velasco1 and Fabrizio Costa1, Ibeas4, Kristian Stevens2, Jeanne Whalen4, Tim Butterfield5, Russell Reagan5, (1)Fondazione E Mach, San Michele all'Adige, Italy, (2)University of Bologna, Monica T Britton6, Randi Famula7, Charis Cardeno8, Mallikarjuna Aradhya9, Bologna, Italy Charles Leslie5, Abhaya Dandekar10, Steven L Salzberg3, Jill Wegrzyn11, 2 7 Charles H Langley and David Neale , (1)Department of Plant Sciences University of California, Davis, CA, (2)Department of Evolution and Ecology, W330: Fruit/Nuts University of California, Davis, Davis, CA, (3)Johns Hopkins University, Development of a Saturated Linkage Map in Prunus salicina L Using School of Medicine, Baltimore, MD, (4)Department of Ecology and Genotyping by Sequencing (GBS) Evolutionary Biology, University of Connecticut, Storrs, CT, (5)UCDAVIS, DAVIS, CA, (6)UC Davis Genome Center, Davis, CA, (7)Dept Plant Sciences 1 1 2 2 Basilio Carrasco , Marlene Gebauer , Carolina Klagges and Herman Silva , University of California, Davis, CA, (8)University of California, Davis, Davis, (1)Pontificia Universidad Católica de Chile, Santiago, Chile, (2)Lab Gen Func CA, (9)USDA National Clonal Germplasm Repository, Davis, CA, & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile (10)University of California Davis, Davis, CA, (11)University of Connecticut, Storrs, CT

W333: Fruit/Nuts Sexuality of Persimmons Kei Kajita, Takashi Akagi, Hisayo Yamane and Ryutaro Tao, Graduate School of Agriculture, Kyoto University, Kyoto, Japan

W334: Fruit/Nuts W337: Functional Genomics Genomic Studies on a Highly Complex Trait in Sweet Cherry: Tolerance Mapping Complex Traits in Plants: Nitrogen Use Efficiency in Barley As to Rain-Induced Fruit Cracking a Case Study José Quero-Garcia1, José A Campoy Corbalán2, Guillaumme Lalanne-Tisné1, Allen Good, University of Alberta, Edmonton, AB, Canada 1 1 3 3 Jacques Joly , Yves Gibon , Marc Lahaye , Sophie Le Gall , Francisco Robledo4, Herman Silva4 and Elisabeth Dirlewanger5, (1)INRA, UMR 1332 Biologie du Fruit et Pathologie, Villenave d'Ornon, France, (2)INRA, UMR W338: Functional Genomics 1332 de Biologie du Fruit et Pathologie, Villenave d’Ornon, France, (3)INRA NUE in Maize BIA, Nantes, France, (4)Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile, Santiago, Chile, (5)INRA, UMR 1332 Biologie du Fruit et Pathologie, Stephen P Moose, University of Illinois Urbana-Champaign, Urbana, IL Villenave d’Ornon, France W339: Functional Genomics W335: Fruit/Nuts The Response of Maize to N Supply and Demand is Highly Dynamic RosBREED: Combining Disease Resistance with Horticultural Quality in Across the Lifecycle New Rosaceous Cultivars Trevor Garnett, University of Adelaide, Glen Osmond, Australia 1 2 3 4 5 Amy Iezzoni , Cameron Peace , Nahla Bassil , Michael Coe , Chad Finn , Ksenija Gasic6, James J Luby7, Dorrie Main2, Jim McFerson8, John L Norelli9, 10 11 7 W340: Functional Genomics Mercy Olmstead , Vance M Whitaker and Chengyan Yue , (1)Michigan State University, East Lansing, MI, (2)Washington State University, Pullman, Regulation of Amino Acid Metabolism in Tomato Seeds WA, (3)USDA/ARS, NCGR, Corvallis, OR, (4)Cedar Lake Research Group, Portland, OR, (5)USDA-ARS, Horticultural Crops Research Lab, Corvallis, Aaron Fait, Ben-Gurion University, Midreshet Ben Gurion, Israel, David OR, (6)Clemson University, Clemson, SC, (7)University of Minnesota, St Paul, Toubiana, Ben Gurion University, Sede Boqer, Israel and Albert Batushansky, MN, (8)Washington Tree Fruit Research Commission, Wenatchee, WA, Ben-Gurion University, Midreshet Ben-Gurion, Israel (9)USDA-ARS, Kearneysville, WV, (10)University of Florida, Gainesville, FL, (11)University of Florida, Wimauma, FL W341: Functional Genomics Nitrate Foraging By Arabidopsis Root Is Mediated By the Transcription W336: Functional Genomics Factor TCP20 through the Systemic Signaling Pathway (from DNA cis- Nitrate Responsive Transcription in Maize Is Highly Dynamic Across the Elements to Nitrate Regulatory Network) Lifecycle Peizhu Guan, UCSD, La Jolla, CA Trevor Paul Garnett, The University of Adelaide, Glen Osmond, Australia

166 W342: Functional Genomics of C4 and CAM photosynthesis W347: Functional Genomics of C4 and CAM photosynthesis Evolution of C4 Photosynthesis: The Role of Low CO2 Environment Transcriptome and Genome Assemblies of the Common Ice Plant, a Halophytic, Facultative Crassulacean Acid Metabolism (CAM) Species Xinguang Zhu, CAS-MPG Partner Institute for Computational Biology,Shanghai Institutes for Biological Sciences, Chinese Academy of Won Cheol Yim1, Richard L Tillett2, Bahay G Bilgi1, Karen A Schlauch2, Sciences, Shanghai, China Rebecca L Albion1, Samuel M D Seaver3, Hengfu Yin4, Xiaohan Yang4 and 1 John C Cushman , (1)Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV, (2)Nevada Center for Bioinformatics, W343: Functional Genomics of C4 and CAM photosynthesis University of Nevada, Reno, Reno, NV, (3)Mathematics and Computer Science Metabolic Transport Functions in C4 Photosynthesis Division, Argonne National Laboratory, Argonne, IL, (4)Oak Ridge National Laboratory, Oak Ridge, TN Andreas PM Weber, Heinrich Heine Universität Düsseldorf, Düsseldorf,

Germany W348: Fungal Genomics

Comparative Genomics of Phytophthora rubi and P fragariae W344: Functional Genomics of C4 and CAM photosynthesis A Comparative Genomics Approach to Understanding C4 Photosynthetic Niklaus Grunwald, USDA-ARS, Corvallis, OR Differentiation in the Grasses Thomas P Brutnell, Donald Danforth Plant Science Center, St Louis, MO W349: Fungal Genomics Regulatory Networks Associated with Plant Cell Wall Deconstruction by Fungi W345: Functional Genomics of C4 and CAM photosynthesis Genome Assembly of the Obligate Crassulacean Acid Metabolism (CAM) N Louise Glass, University of California, Berkeley, CA Species Kalanchoe laxiflora Jerry Jenkins, DOE Joint Genome Institute, Huntsville, AL W350: Fungal Genomics Fungal SM Genome Biology: How to Translate Whole Genome Sequence Information into the Secondary Metabolome in Filamentous Fungi? W346: Functional Genomics of C4 and CAM photosynthesis Proteomic Studies in Monocot and Eudicot Crassulacean Acid Metabolism Cheng-Cang Charles Wu1, Jin Woo Bok2, Jessica C Albright3, Rosa Ye4, (CAM) Species Anthony W Anthony W Goering3, Neil L Kelleher3 and Nancy P Keller2, (1)Intact Genomics, Inc, St Louis, MO, (2)University of Wisconsin at Madison, Paul E Abraham, BioEnergy Science Center, Oak Ridge National Laboratory, Madison, WI, (3)Northwestern University, Evanston, IL, (4)Intact Genomics, Oak Ridge, TN Inc, St Louis, MO

W351: Fungal Genomics W356: Gene Expression Analysis Cronartium Comparative Genomics: Understanding the Canker Causing Understanding Gene Expression Responses to the Environment in Tomato Basidiomycete Genomes Roots at the Cell Type and Tissue-Specific Level Braham Dhillon, Nicolas Feau and Richard Hamelin, University of British Sharon B Gray1, Kaisa Kajala1, Mily Ron1, Kristina Zumstein1, Germain Columbia, Vancouver, BC, Canada Pauluzzi2, Mauricio A Reynoso2, Roger B Deal3, Julia Bailey-Serres2, Neelima 1 1 R Sinha and Siobhan Brady , (1)University of California, Davis, Davis, CA, (2)University of California, Riverside, Riverside, CA, (3)Emory University, W352: Fungal Genomics Atlanta, GA Wheat Expression Differences Induced by Six Puccinia triticina Races Kerri Neugebauer1, Myron Bruce2, Harold N Trick1 and John Fellers3, W357: Gene Expression Analysis (1)Kansas State University, Manhattan, KS, (2)USDA-ARS-HWWGRU, RoDEO: Non-Parametric Robust Differential Expression Operator Manhattan, KS, (3)USDA ARS, Manhattan, KS 1 2 3 1 4 Niina Haiminen , Zeyu Zhou , Manfred Klaas , Filippo Utro , Susanne Barth and Laxmi Parida1, (1)IBM T J Watson Research - Computational Biology W353: Fungal Genomics Center, Yorktown Heights, NY, (2)IBM Research, Carlton, Australia, A Unique Set of Supernumerary Chromosomes in the Genome (3)Teagasc Crops Environment and Land Use Programme, Carlow, Ireland, of Fusarium oxysporum NRRL32931 Contributes to its Pathogenicity (4)Teagasc, Carlow, Ireland

Li-Jun Ma, University of Massachusetts Amherst, Amherst, MA W358: Gene Expression Analysis

Networks Regulating Hormone-Mediated Plant Growth W354: Galaxy for SNP and Variant Data Analysis Galaxy for SNP and Variant Data Analysis Mathew G Lewsey1, Liang Song1, S Carol Huang1, Mark Zander1, Mingtang Xie1, Aaron Wise2, Matthew T Weirauch3, Timothy R Hughes4, Ziv Bar- Dave Clements, Johns Hopkins University, Eugene, OR Joseph2 and Joseph Ecker5, (1)Salk Institute for Biological Studies, La Jolla, CA, (2)Carnegie Mellon University, Pittsburgh, PA, (3)Cincinnati Children's Hospital, Cincinnati, OH, (4)University of Toronto, Toronto, ON, Canada, W355: Gene Expression Analysis (5)Salk Institute for Biological Studies & Howard Hughes Medical Institute, La TBA Jolla, CA Rodrigo A Gutierrez, Pontificia Universidad Católica de Chile, Santiago, Chile

167 W359: Gene Expression Analysis W363: Gene Introgression Identification of Novel Flavonoid-Pathway Regulatory Genes using Hordeum bulbosum - Genetic Resources for Barley Crop Improvement Transcriptome Correlation Network Analysis in Ripe Strawberry Revisited (Fragaria x ananassa) Fruit Nils Stein, Neele Wendler, Axel Himmelbach and Martin Mascher, Leibniz Jeremy Pillet1, Haowei Yu1, Alan Chambers1, Vance M Whitaker2 and Kevin Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland, M Folta1, (1)University of Florida, Gainesville, FL, (2)University of Florida, Germany Wimauma, FL W364: Gene Introgression W360: Gene Expression Analysis Introgression of Wild Alleles for Improving Abiotic Stress Resistance in Full-length, Single Molecule, Whole Transcriptome cDNA Sequencing of Crop Plants the European Cuttlefish Yehoshua Saranga, R H Smith Institute of Plant Science & Genetics in Tyson A Clark1, Yi Han2, Jeffrey Rogers2, Kim C Worley2, Min Wang2, Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel 3 4 1 1 Nathan Tublitz , Graziano Fiorito , Ting Hon , Cheryl Heiner , Elizabeth Tseng1, Muthuswamy Raveendran2, Vanessa Vee2, Donna M Muzny2 and Richard A Gibbs2, (1)Pacific Biosciences, Menlo Park, CA, (2)Baylor College W365: Gene Introgression of Medicine, Houston, TX, (3)University of Oregon, Eugene, OR, (4)Stazione Targeted Introgression of Stem Rust Ug99 Resistance from Wheatgrasses Zoologica Anton Dohrn, Napoli, Italy into Pasta and Bread Wheat

1 1 1 2 Steven S Xu , Timothy L Friesen , Shiaoman Chao , Yue Jin , Matthew N W361: Gene Introgression Rouse2, Justin D Faris1 and Xiwen Cai3, (1)USDA-ARS, Fargo, ND, (2)USDA- Introgression of Useful Agronomic Traits from Barley into Wheat ARS, University of Minnesota, St Paul, MN, (3)North Dakota State University, Fargo, ND Marta Molnar-Lang, Agricultural Institute, Centre for Agricultural Research, Hungarian Academy of Sciences,, Martonvasar, Hungary W366: Gene Introgression

High Resistant Genes of Leaf Rust and Fusarium Transferred to Wheat W362: Gene Introgression from Thinopyrum intermedium and Th elongatum

A Tale of Two Accessions: Rapid Curation of Germplasm Collections 1 2 2 2 3 Using Genotyping-by-Sequencing Xiang Guo , Jing Wang , Qinghua Shi , Yanlin Hou and Fangpu Han , (1)Institute of Genetics and Developmental Biology, Beijing, China, Jesse Poland, Kansas State University, Manhattan, KS (2)Institute of Genetics and Developmental Biology, beijing, China, (3)Chinese Academy of Sciences, Beijing, China

W367: Generic Genome Browser W372: Genome annotation resources at the EBI JBrowse Installation and Configuration Functional Genomics Resources at EBI: ArrayExpress and Expression Atlas Scott Cain, Ontario Institute for Cancer Research, MEDINA, OH Maria Keays, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom W368: Genome annotation resources at the EBI

Intro W373: Genome annotation resources at the EBI Sandra Orchard, EMBL-EBI, Hinxton, United Kingdom Manual and Automatic Annotation of Plants and Animals in the UniProt Knowledgebase and the Gene Ontology W369: Genome annotation resources at the EBI Claire O'Donovan, European Bioinformatics Institute (EMBL-EBI), Hinxton, Browsing Genes and Genomes with Ensembl and Ensembl Genomes United Kingdom

Emily Perry, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom W374: Genome annotation resources at the EBI Metabolomics and Small Molecule Resources at the EBI W370: Genome annotation resources at the EBI Sandra Orchard, EMBL-EBI, Hinxton, United Kingdom New Variation Archive at EMBL-EBI: European Variation Archive Gary Saunders, European Bioinformatics Institute (EMBL-EBI), Hinxton, W375: Genome annotation resources at the EBI United Kingdom Training in Data, Tools and Resources for Life Scientists

Katrina Costa, EMBL-EBI, Cambridge, United Kingdom W371: Genome annotation resources at the EBI

Manual Genome Annotation and Vega W376: Genome annotation resources at the EBI Toby Hunt, Jane Loveland and Jennifer Harrow, Wellcome Trust Sanger Introducing the EMBL-EBI Industry Program Institute, Cambridge, United Kingdom Dominic Clark, EMBL-EBI, Cambridge, United Kingdom

168 W377: Genome management and analysis with CoGe W382: Genomics-Assisted Breeding Genome Analysis with CoGe Identification and Cross-Validation of Trait-Associated SNPs Provide Insights into Heterosis Haibao Tang, J Craig Venter Institute, Rockville, MD Patrick S Schnable, Department of Agronomy, Iowa State University, Ames, IA W378: Genomics-Assisted Breeding

Welcome & Introduction W383: Genomics-Assisted Breeding Rajeev K Varshney, ICRISAT, Greater Hyderabad, India Heuristic Exploitation of Genetic Structure in Marker-Assisted Gene Pyramiding Problems W379: Genomics-Assisted Breeding Herman De Beukelaer1, Geert De Meyer2 and Veerle Fack1, (1)Ghent High Throughput SNP Discovery and Genotyping in Hexaploid Wheat University, Ghent, Belgium, (2)Bayer CropScience NV, Diegem, Belgium

Etienne Paux, INRA GDEC, Clermont-Ferrand, France W384: Genomics-Assisted Breeding

Novel Strategies in Integrating Genomic Selection into the Broad W380: Genomics-Assisted Breeding Genomics-Assisted Breeding Framework The Influenza Paradigm for Resistance Gene Deployment in Lettuce Jianming Yu, Department of Agronomy, Iowa State University, Ames, IA Richard Michelmore1, Marilena Christopoulou1, Leah McHale2, Lorena 3 4 1 1 Parra , Alexander Kozik , Sebastian Reyes Chin-Wo , Rosa Juliana Gil , Cayla Tsuchida5, Maria Jose Truco1 and Dean Lavelle1, (1)Genome Center, W385: Genomics-Assisted Breeding University of California, Davis, CA, (2)The Ohio State University, Columbus, Summary & Wrap-up OH, (3)University of California, Davis, CA, (4)UC Davis Genome Center, Davis, CA, (5)University of California, Davis, Davis, CA Rajeev K Varshney, ICRISAT, Greater Hyderabad, India

W381: Genomics-Assisted Breeding W386: Genomic Selection and Genome-Wide Association Studies Genetic Dissection of Biomass Development in Barley Predicting Yield of Hybrid Rice Using Omics Data

Andreas Graner, Leibniz Institute of Plant Genetics and Crop Plant Research Shizhong Xu, University of California, Riverside, CA and Qifa Zhang, (IPK), Gatersleben, Germany Huazhong Agricultural University, Wuhan, China

W387: Genomic Selection and Genome-Wide Association Studies W390: Genomic Selection and Genome-Wide Association Studies Advances on Bos indicus (Nellore) Genomics: Integrating Genomic Genomic Selection in New Zealand Sheep Using a Mixed-breed Training Selection and GWAS Information Set Jose Fernando Garcia, Sao Paulo State University / UNESP, Sao Paulo, Ken Dodds1, Benoît Auvray2, Michael A Lee2, Sheryl-Anne N Newman1, Brazil, Yuri Tani Utsunomiya, Faculdade de Ciências Agrárias e Veterinárias, Suzanne Rowe1, Patricia L Johnson1, Shannon Clarke1, Ricardo Ventura3, UNESP - Univ Estadual Paulista, Araçatuba, Brazil, Paolo Ajmone Marsan, Matthew J Bixley1 and John McEwan1, (1)Invermay Agricultural Centre, Inst of Zootechnics, Università Cattolica del S Cuore, Piacenza, Italy, Tad S AgResearch Ltd, Mosgiel, New Zealand, (2)Department of Mathematics and Sonstegard, Animal Genomics and Improvement Laboratory, USDA-ARS, Statistics, University of Otago, Dunedin, New Zealand, (3)Beef Improvement Beltsville, MD and The Zebu Genome Consortium, The Zebu Genome Opportunities, Guelph, ON, Canada Consortium, AL W391: Genomics of Genebanks W388: Genomic Selection and Genome-Wide Association Studies Overview of the Workshop Selection Mapping: A Powerful Tool for Population Improvement Christopher M Richards, USDA-ARS, FT COLLINS, CO Tim Beissinger, University of California Davis, Davis, CA W392: Genomics of Genebanks W389: Genomic Selection and Genome-Wide Association Studies The Complex Tale of the High Oleic Acid Trait in Peanut (Arachis New Developments in Plant Genomic Prediction Models hypogaea L) Jose Crossa, CIMMYT, Mexico city, Mexico, Gustavo de los Campos, Noelle A Barkley1, Claire Klevorn2, Keith Hendrix3 and Lisa Dean3, University of Alabama, Birmingham, AL, Paulino Perez-Rodriguez, Colegio de (1)USDA-ARS, PGRCU, Griffin, GA, (2)NC State University, Raleigh, NC, Postgraduado, Texcoco, Mexico, Sergio Perez-Elizalde, Colegio de Post- (3)USDA ARS Market Quality and Handling Research, Raleigh, NC Graduado, Texcoco, Mexico, Osval A Montesinos-Lopez, Universidad de Colima, Colima, Mexico, Jaime Cuevas, Universidad de Quintana Ro, Chetumal, Mexico, Marco Lopez-Cruz, CIMMYT INT, Mexico DF, Mexico and Daniel Gianola, Department of Biostatistics and Medical Informatics, University of Wisconsin - Madison, Madison, WI

169 W393: Genomics of Genebanks W396: Genomics of Non-Classical Model Animals A Genome-Wide Association Study of Resistance to Stripe Rust (Puccinia Genomics of Nematode Parasites of Pigs, Sheep, and Other Animals: striiformis f sp tritici) in a Worldwide Collection Towards Understanding Human Immune Modulation Marco Maccaferri1, Junli Zhang2, Peter Bulli3, Zewdie A Abate4, Shiaoman Paul W Sternberg, Division of Biology and Biological Engineering, Caltech, Chao5, Dario Cantu2, Eligio Bossolini6, Xianming Chen7, Michael Pumphrey3 Pasadena, USA, Pasadena, CA 2 and Jorge Dubcovsky , (1)DipSA - University of Bologna, Bologna, Italy, (2)University of California Davis, Davis, CA, (3)Washington State University, Pullman, WA, (4)MONSANTO, Yuma, AZ, (5)USDA-ARS, Fargo, ND, W397: Genomics of Non-Classical Model Animals (6)Bayer CropScience, Gent, Belgium, (7)USDA-ARS, Pullman, WA The Tale of Whales Genomics in Aquatic Adaptation - Might It be Associated with Human Disease? W394: Genomics of Genebanks Jong Bhak, UNIST, Ulsan, South Korea Genomics of Wild Cicer of Turkey Eric J von Wettberg1, Jens D Berger2, Bekir Bukun3, Abdullah Kahraman4, W398: Genomics of Non-Classical Model Animals Abdulkadir AydoÄŸan5, Alex Greenspan6, Emily Warschefsky1, Yadira Polar Bears Genomics and Its Association with Cardiomyopathy and Reynaldo1, Emmanuel Dacosta-Calheiros1, Peter Chang7, Sergey V Nuzhdin7, Vascular Disease R Varma Penmetsa8 and Douglas R Cook9, (1)Florida International University, Miami, FL, (2)Plant Industry, CSIRO, Floreat, WA, Australia, (3)Dicle Rasmus Nielsen, Department of Integrative Biology and Statistics, Berkeley, University, Diyarbakir, Turkey, (4)Harran University, Urfa, AZ, Turkey, CA (5)Turkish Ministry of Agriculture, Ankara, Turkey, (6)University of California, Davis, CA, (7)University of Southern California, Los Angeles, CA, W399: Genomics of Non-Classical Model Animals (8)University of California Davis, Davis, CA, (9)University of California at Davis, Davis, CA Derived Immune and Ancestral Pigmentation Alleles in a 7,000-Year-Old European Hunter-Gatherer

W395: Genomics of Genebanks Morten E Allentoft, Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark Diversity Seek (DivSeek): Towards A Concerted Effort To Harness The Genetic Potential Of The World’s Genebanks Peter Wenzl1, Ruth Bastow2, Hannes Dempewolf1, Daniele Manzella3, Francisco Lopez3 and Wayne Powell4, (1)Global Crop Diversity Trust, Bonn, Germany, (2)Global Plant Council, London, United Kingdom, (3)FAO, Rome, Italy, (4)CGIAR Consortium Office, Montpellier, France

W400: Genomics of Non-Classical Model Animals W404: Genomics of Plant Development Adaptation to High Altitude: Does It Teach Us about the Pathobiology of Inflorescence Architecture in Grasses: Regulatory Networks and Hypoxia at Sea Level? Translational Genomics Gabriel Haddad, University of California, San Diego, San Diego, CA Andrea L Eveland, Donald Danforth Plant Science Center, St Louis, MO

W401: Genomics of Plant Development W405: Genomics of Plant Development Transcription Start Site Sequencing Strongly Informs Gene Regulatory Four New Soybean Sources Carrying Novel SACPD-C Alleles Containing Network Inference High Level of Seed Stearic Acid and Conferring Resistance to Soybean Cyst Nematode Molly Megraw, Oregon State University, Corvallis, OR Naoufal Lakhssassi, Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL W402: Genomics of Plant Development

Understanding Disease Resistance Signaling in Common Bean (Phaseolus vulgaris L) through Integrated Epigenomic and Transcriptomic Analyses W406: Genomics of Plant Development Mutation Breeding in Crops and Translational Development Research Venu (Kal) Kalavacharla, Delaware State University, Dover, DE Abdelhafid Bendahmane, INRA, Evry, France; INRA-URGV, Evry, France W403: Genomics of Plant Development The Search for Functional Structural Variants and Adaptive Traits in W407: GMOD Soybean The Future of GMOD and Chado Justin E Anderson1, Michael B Kantar1, Thomas J Y Kono2, Fengli Fu2, Scott Cain, Ontario Institute for Cancer Research, MEDINA, OH 3 4 5 2 Adrian O Stec , Steven B Cannon , Leah McHale and Robert M Stupar , (1)University of Minnesota, St Paul, MN, (2)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, (3)University of W408: GMOD Minnesota, Saint Paul, MN, (4)USDA-ARS-CICGRU, Ames, IA, (5)The Ohio KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and State University, Columbus, OH Genomics of Pulse Crops with Model Genomes

Lacey-Anne Sanderson, Albert Vandenberg, Bunyamin Taran, Tom Warkentin and Kirstin Bett, University of Saskatchewan, Saskatoon, SK, Canada

170 W409: GMOD W413: Gramene Project Phytozome Population Diversity Visualization in JBrowse: A very large Browsing and Comparing Genomes Using the Gramene/Ensembl Plants Dataset Case Study Browser Richard D Hayes, Jeremy L Phillips, Joseph W Carlson, David M Goodstein Joshua Stein, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY and Daniel S Rokhsar, DOE Joint Genome Institute, Walnut Creek, CA W414: Gramene Project W410: GMOD Programmatic Interfaces to Plant Genomic Data JBrowse within the Arabidopsis Information Portal (AIP) Project Paul J Kersey, EMBL - The European Bioinformatics Institute, Cambridge, Maria Kim, Vivek Krishnakumar, Benjamin D Rosen, Chia-Yi Cheng, Erik United Kingdom Ferlanti, Jason R Miller and Christopher D Town, J Craig Venter Institute, Rockville, MD W415: Gramene Project

Plant Reactome: A Resource for Plant Metabolic and Regulatory W411: GMOD Pathways Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes Justin Preece, Dept of Botany & Plant Pathology, Oregon State University, Monica C Munoz-Torres1, Nathan A Dunn1, Monica Poelchau2, Colin Diesh3, Corvallis, OR 3 4 3 1 Deepak Unni , Ian Holmes , Christine G Elsik and Suzanna Lewis , (1)Lawrence Berkeley National Laboratory, Walnut Creek, CA, (2)USDA/Agricultural Resarch Service/National Agricultural Library, W416: Gramene Project Beltsville, MD, (3)Division of Animal Sciences, University of Missouri, Expression Atlas - a New Resource for Baseline and Differential Gene Columbia, MO, (4)Department of Bioengineering, Berkeley, CA Expression for Crop Plants

Robert Petryszak, EMBL - The European Bioinformatics Institute, Hinxton, W412: GMOD United Kingdom The Teosinte (Zea mays ssp parviglumis) de novo Genome Assembly Arun S Seetharam, Iowa State University, Ames, IA

W417: Gramene Project W420: Grape Genome Initiative Hands-on Session: Upload, Display and Analyze Your Data on the Comparative Transcriptomics of Two Grapevine Species Gramene/Ensembl Genome Browser Allison Miller, Saint Louis University, Saint Louis, MO Sushma Naithani, Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR W421: Grape Genome Initiative

Overview of the GnpIS Grape Genomics and Genetic Integrative Resource W418: Grape Genome Initiative for Diversity Studies

A Pathogenomic Approach to Decipher the Molecular Mechanisms 1 1 1 1 Underlying Grapevine Diseases Nacer Mohellibi , Nathalie Choisne , Aminah Keliet , Daphné Verdelet , Françoise Alfama1, Guillaume Merceron2, Célia Michotey2, Amandine Dario Cantu1, Abraham Morales-Cruz1, Laura Jones1, Barbara Blanco-Ulate1, Launay3, Thomas Letellier1, Raphael Flores1, Erik Kimmel1, Michael Alaux1, Katherine CH Amrine1, Summaira Riaz1, Andrew Walker1, Philippe E Cyril Pommier1, Sophie Durand1, Delphine Steinbach1, Hadi Quesneville1 and Rolshausen2 and Kendra Baumgartner3, (1)University of California Davis, Anne-Francoise Adam-Blondon4, (1)INRA - URGI, Versailles, France, Davis, CA, (2)University of California Riverside, Davis, CA, (3)USDA-ARS, (2)INRA URGI, Versailles, France, (3)INRA, Montpellier, France, (4)INRA, Davis, CA VERSAILLES, France

W419: Grape Genome Initiative W422: Grape Genome Initiative An Update on VitisGen: Recent Advances in Using DNA Marker The Hunt for Adaptive Variation in Wild Grapevine; Sequencing, Technologies in US Grape Breeding Programs Assembly, and Annotation of North American Vitis Reference Transcriptomes Lance Cadle-Davidson1, Bruce Reisch2, Qi Sun3, Peter Schweitzer4, Gavin Sacks4, Jason Londo1, Craig A Ledbetter5, James J Luby6, Peter Hemstad6, Jason Londo, Jacquelyn Lillis and Kathleen Deys, USDA-ARS Grape Adrian Hegeman6, SLT Teh6, David Manns2, Paola Barba2, Katie Hyma4, Genetics Research Unit, Geneva, NY 1 4 2 Jacquelyn Lillis , Jonathan Fresnedo Ramirez , Shanshan Yang and Elizabeth M Takacs2, (1)USDA-ARS Grape Genetics Research Unit, Geneva, NY, (2)Cornell University, Geneva, NY, (3)Institute for Genomic Diversity, Cornell W423: Grape Genome Initiative University, Ithaca, NY, (4)Cornell University, Ithaca, NY, (5)Crop Diseases, ABA Signaling in Grapevine Pests and Genetics Research Unit, USDA-ARS, Parlier, CA, (6)University of Minnesota, St Paul, MN Supakan Rattanakon, University of Nevada, Reno, Reno, NV

171 W424: Grass Genome Initiative (IGGI) W428: Grass Genome Initiative (IGGI) Structure and Function of Ph1 Genes in Wheat and Other Cereals Co-Occurrence of Long-Lasting Retrotransposon Activity and Lack of Symmetric CG Methylation in the Genome of Arabis alpina Kulvinder Gill, Washington State University, Pullman, WA Korbinian Schneeberger, Max Planck Institute for Plant Breeding Research, Cologne, Germany W425: Grass Genome Initiative (IGGI)

A Reference Genome and HapMap for Pearl Millet (Pennisetum glaucum) W429: Grasslands (Lolium Genome Initiative) Rajeev K Varshney, ICRISAT, Greater Hyderabad, India Genetic Improvement of Switchgrass: The Brave New World of Genomic Selection W426: Grass Genome Initiative (IGGI) Michael Casler, USDA-ARS, Madison, WI and Guillaume P Ramstein, Transposable Element Histories Across a Broad Sampling of Panicoid University of Wisconsin-Madison, Madison, WI Grasses Jeffrey L Bennetzen1, Minkyu Park1, Oriane Hidalgo2, Ilia J Leitch2 and P a W430: Grasslands (Lolium Genome Initiative) 3 Christin , (1)University of Georgia, Athens, GA, (2)Jodrell Laboratory, Machine Learning for Genomic Prediction in Lolium perenne Richmond, United Kingdom, (3)Department of Animal and Plant Sciences Sheffield University, Sheffield, United Kingdom Leif Skot1, Nastasiya F Grinberg2, Alan Lovatt3, Andrea Macfarlane4, Matthew 3 4 3 2 5 Hegarty , Kirsten P Skot , Ian Armstead , Ross D King and Wayne Powell , (1)IBERS, Ceredigion, United Kingdom, (2)Manchester Institute of W427: Grass Genome Initiative (IGGI) Biotechnology - University of Manchester, Manchester, United Kingdom, Exploring an Annotated Sequence Assembly of the Perennial Ryegrass (3)IBERS, Aberystwyth University, Aberystwyth, United Kingdom, (4)IBERS Genome for Genomic Regions Enriched for Trait Associated Variants - Aberystwyth University, Aberystwyth, United Kingdom, (5)CGIAR Consortium Office, Montpellier, France Stephen Byrne1, Fabio Cericola2, Luc L Janss3, Just Jensen2, Dario Fè2, Bilal 2 1 4 5 H Ashraf , Adrian Czaban , Morten Greve-Pedersen , Ingo Lenk , Christian Sig Jensen6 and Torben Asp1, (1)Molecular Biology and Genetics, Aarhus University, Slagelse, Denmark, (2)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark, (3)Aarhus University, Aarhus, Denmark, (4)DLF- Trifolium, St Heddinge, Roskilde, Denmark, (5)DLF-Trifolium, St Heddinge, Denmark, Store Heddinge, Denmark, (6)DLF Trifolium, Store Heddinge, Denmark

W431: Grasslands (Lolium Genome Initiative) W433: Grasslands (Lolium Genome Initiative) Probing Genome Diversity in Natural and Breeding Populations of Lolium Genomic Prediction in a Breeding Program of Perennial Ryegrass perenne Dario Fè1, Bilal H Ashraf1, Morten Greve-Pedersen2, Niels Roulund3, Fabio Tom Ruttink1, Elisabeth Veeckman2, Annelies Haegeman1, Frederik van Cericola1, Ingo Lenk4, Thomas Didion5, Adrian Czaban6, Stephen Byrne7, Luc Parijs1, Sabine Van Glabeke1, Hilde Muylle1, Klaas Vandepoele3, Stephen L Janss8, Torben Asp6, Christian Sig Jensen9 and Just Jensen1, (1)Molecular Byrne4, Torben Asp5 and Isabel Roldan-Ruiz1, (1)ILVO-Plant Sciences Unit- Biology and Genetics, Aarhus University, Tjele, Denmark, (2)DLF-Trifolium, Growth and Development, Melle, Belgium, (2)ILVO-Plant Sciences Unit- St Heddinge, Roskilde, Denmark, (3)DLF-Trifolium, St Heddinge, Denmark, Growth and Development, Melle, Belgium, (3)VIB Department of Plant Roskilde, Denmark, (4)DLF-Trifolium, St Heddinge, Denmark, Store Systems Biology, Ghent University, Ghent, Belgium, (4)Aarhus University, Heddinge, Denmark, (5)DLF-Trifolium, St Heddinge, Denmark, St Heddinge, Slagelse, Denmark, (5)Molecular Biology and Genetics, Aarhus University, Denmark, (6)Molecular Biology and Genetics, Aarhus University, Slagelse, Slagelse, Denmark Denmark, (7)Aarhus University, Slagelse, Denmark, (8)Aarhus University, Aarhus, Denmark, (9)DLF Trifolium, Store Heddinge, Denmark W432: Grasslands (Lolium Genome Initiative) Comparative Genome Analysis of Lolium-Festuca Complex Species W434: Grasslands (Lolium Genome Initiative)

1 1 2 2 Uncovering the Water Stress Response of Reed Canary Grass (Phalaris Adrian Czaban , Stephen Byrne , Sapna Sharma , Manuel Spannagl , Istvan arundinacea) from Differential Expression of the Reference Transcriptome Nagy1, Matthias Pfeifer2, Heidrun Gundlach2, Klaus FX Mayer3 and Torben Asp1, (1)Aarhus University, Slagelse, Denmark, (2)Institute of Bioinformatics Manfred Klaas1, Niina Haiminen2, Filippo Utro2, Tia Vellani1, Paul & Systems Biology, MIPS, Neuherberg, Germany, (3)Plant Genome and Cormican3, Poul E Laerke4, Uffe Jørgensen4, Laxmi Parida2 and Susanne Systems Biology, Helmholtz Center Munich, Neuherberg, Germany Barth1, (1)Teagasc Crops Environment and Land Use Programme, Carlow, Ireland, (2)IBM T J Watson Research - Computational Biology Center, Yorktown Heights, NY, (3)Teagasc Animal and Bioscience Research Department, Dunsany, Ireland, (4)Dept of Agroecology, Aarhus University, Tjele, Denmark

W435: Host-Microbe Interactions Genomic Plasticity and the Adaptation of Pathogenic Fungi Li-Jun Ma, University of Massachusetts Amherst, Amherst, MA

172 W436: Host-Microbe Interactions W440: International Goat Genome Consortium The Downy Mildews: So Many Genomes, so Little Time Progress on the Reassembly and Annotation of the Goat Genome

Lida Derevnina1, Sebastian Reyes Chin-Wo1, Frank Martin2, Kelsey Wood1, Steven G Schroeder1, Derek Bickhart1, Sergey Koren2, Adam Phillippy2, Lutz Froenicke1, Joan Wong3, Rosa Juliana Gil1, Steve Klosterman4, Otmar Timothy PL Smith3, Joshua N Burton4, Ivan Liachko4, Brian Sayre5, Heather J Spring5, Rajan Sharma6, Rajeev K Varshney6, Clint Magill7 and Richard Huson6, Curtis P VanTassell1 and Tad S Sonstegard1, (1)Animal Genomics and Michelmore1, (1)Genome Center, University of California, Davis, CA, Improvement Laboratory, USDA-ARS, Beltsville, MD, (2)DOD - National (2)USDA ARS, Salinas, CA, (3)Bayer CropScience NV, Ghent, Belgium, Biodefense and Countermeasures Center, Frederick, MD, (3)USDA-ARS, US (4)USDA, Salinas, CA, (5)University of Hohenheim, Stuttgart, Germany, Meat Animal Research Center, Clay Center, NE, (4)University of Washington - (6)ICRISAT, Greater Hyderabad, India, (7)Texas A&M University, College Department of Genome Sciences, Seattle, WA, (5)Virginia State University, station, TX Petersburg, VA, (6)Cornell University, Ithaca, NY

W437: Host-Microbe Interactions W441: International Goat Genome Consortium Human-Specific Changes in the Biology of Siglecs and their Relevance for ADAPTmap: A First Insight into Goat Adaptation Host–Microbe Interactions Ezequiel Luis Nicolazzi, Fondazione Parco Tecnologico Padano, Lodi, Italy, Flavio Schwarz, University of California, San Diego, La Jolla, CA Alessandra Stella, FPTP, Lodi, Italy and the AdaptMap Group, Parco Tecnologico Padano, Lodi, Italy W438: Host-Microbe Interactions Salmon Skin – Ground Zero of the Molecular War Laura M Braden, University of Victoria, Victoria, BC, Canada and Simon R M Jones, Pacific Biological Station, Fisheries & Oceans Canada, Nanaimo, BC, Canada

W439: International Goat Genome Consortium Introduction Gwenola Tosser-Klopp, INRA, Castanet-Tolosan, France

W442: International Goat Genome Consortium W445: International Goat Genome Consortium Analysing the Genetic Diversity of Domestic and Wild Goats in Spain FR-AgENCODE: A Pilot Project to Improve the Functional Annotation of Livestock Genomes Arianna Manunza1, Antonia Noce1, Juan Manuel Serradilla2, Felix Goyache3, Amparo Martínez2, Juan Capote4, Juan V Delgado2, Jordi Jordana5, Eva Sylvain Foissac, INRA - GenPhySE, Castanet Tolosan, France and Elisabetta Muñoz-Mejías2, Antonio Molina2, Vincenzo Landi2, Raul Tonda6, Sergi Giuffra, INRA, UMR de Génétique Animale et Biologie Intégrative, Jouy-en- Beltran Beltran6, Agueda Pons7, Valentin Adrian Balteanu8, Amadou Traore9, Josas, France 10 11 1 1 Oriol Vidal , Montse Vidilla , Angela Canovas , Armand Sanchez and Marcel Amills1, (1)Center for Research in Agricultural Genomics, Bellaterra, Spain, (2)University of Cordoba, Cordoba, Spain, (3)SERIDA, Villaviciosa, W446: International Goat Genome Consortium Spain, (4)ICIA, La Laguna, Spain, (5)Universitat Autonoma Barcelona, Conclusion / Discussion Bellaterra, Spain, (6)Centre Nacional d'Anàlisi Genòmica, Barcelona, Spain, (7)Serveis Millora Agrària, Palma de Mallorca, Spain, (8)University of Gwenola Tosser-Klopp, INRA, Castanet-Tolosan, France Agricultural Sciences and Veterinary Medicine Cluj-Napoca, Romania, Cluj- Napoca, Romania, (9)INERA, Ouagadougou, Burkina Faso, (10)Universitat de W447: International Rice Informatics Consortium Girona, Girona, Spain, (11)ARCABRA, Rasquera, Spain Update on IRIC Portal and Consortium

W443: International Goat Genome Consortium Nickolai Alexandrov, International Rice Research Institute, Los Baños, Laguna, Philippines Population Structure and Breed Relations of South African Indigenous Goat Ecotypes Using Genome-Wide SNP Data

1 2 3 W448: International Rice Informatics Consortium Khanyisile Mdladla , Edgar F Dzomba , Heather J Huson and Farai C Muchadeyi1, (1)Agricultural Research Council, Pretoria, South Africa, Enabling Knowledge Management in the Agronomic Domain (2)University of KwaZulu-Natal, Pietermartzburg, South Africa, (3)Cornell University, Ithaca, NY Pierre Larmande, IRD, UMR DIADE, Institut de Biologie Computationnelle, Montpellier, France, Aravind Venkatesan, Institut de Biologie Computationnelle, Montpellier, France, Manuel Ruiz, CIRAD, UMR AGAP, W444: International Goat Genome Consortium Institut de Biologie Computationnelle, Montpellier Cedex 5, France, Guilhem Sempéré, CIRAD, UMR Intertryp, Montpellier, France and Patrick Valduriez, Toward Genomic Selection in French Dairy Goats INRIA - LIRMM - Institut de Biologie Computationnelle, Montpellier, France 1 2 2 Céline Carillier , Hélène Larroque and Christèle Robert-Granié , (1)INRA UMR 1388 GenPhySE Toulouse, Castanet Tolosan, France, (2)INRA UM 1388, Castanet Tolosan cedex, France

173 W449: International Rice Informatics Consortium W453: International Sheep Genome Consortium TBA Improvement to OARv31 Using Long Read Technology

Rod A Wing, University of Arizona, Arizona Genomics Institute, Tucson, AZ Kim C Worley1, Adam C English1, Xiang Qin1, Shwetha C Murali1, Daniel S 1 1 1 1 1 T Hughes , Stephen Richards , Jeffrey Rogers , Yi Han , Vanessa Vee , Min Wang1, Michael P Heaton2, Brian Dalrymple3, James W Kijas4, Noelle W450: International Rice Informatics Consortium Cockett5, Eric Boerwinkle1, Donna M Muzny1 and Richard A Gibbs1, TBA (1)Baylor College of Medicine, Houston, TX, (2)USDA, ARS, US Meat Animal Research Center (USMARC), Clay Center, NE, (3)CSIRO Agriculture Ruaraidh Hamilton, International Rice Research Institute, Metro Manila, Flagship, St Lucia, Australia, (4)CSIRO Animal, Health and Food Science, St Philippines Lucia, Australia, (5)Utah State University, Logan, UT

W451: International Sheep Genome Consortium W454: International Sheep Genome Consortium LD Chip: Design for Parentage, Imputation and Functional SNPs Functional Annotation of Farm Animal Genomes (FAANG) Rudiger Brauning, AgResearch Ltd, Mosgiel, Otago, New Zealand Alan L Archibald, The Roslin Institute and R(D)SVS, University of Edinburgh, Midlothian, United Kingdom W452: International Sheep Genome Consortium LD Chip: Design for Parentage, Imputation and Functional SNPs W455: International Sheep Genome Consortium SheepGenomesDB: Now and In the Future Carole R Moreno, INRA, Toulouse, France James Kijas, CSIRO Agriculture Flagship, St Lucia, Australia

W456: International Sheep Genome Consortium Genome Sequencing from Historical Parchment Daniel G Bradley, Trinity College Dublin, Dublin, Ireland

W457: International Sheep Genome Consortium W460: International Wheat Genome Sequencing Consortium (IWGSC) Genome Sequencing from Historical Parchment BAC-Based Sequencing of the Aegilops tauschii Genome

Matthew D Teasdale, Trinity College Dublin, Dublin, Ireland Jan Dvorak1, Olin Anderson2, Jeffrey L Bennetzen3, Xiongtao Dai4, Karin R 1 3 5 2 6 Deal , Katrien M Devos , Jaroslav Dolezel , Yong Q Gu , Naxin Huo , Philippe Leroy7, Yong Liang8, Zhiyong Liu8, Ming-Cheng Luo9, Eric Lyons10, W458: International Sheep Genome Consortium Zhengqiang Ma11, Long Mao12, Klaus FX Mayer13, W Richard McCombie14, Genotype By Sequencing (GBS) Pat McGuire1, Hans-Georg Mueller4, Shuhong Ouyang8, Geo Pertea15, Daniela Puiu15, Steven L Salzberg15, Carol Soderlund16, Qixin Sun17, Hao Wang18, Yi Shannon Clarke, AgResearch Ltd Invermay Agricultural Centre, Dunedin, Wang1, Zhenzhong Wang8, Thomas Wicker19, Lichan Xiao8, Frank M You20 New Zealand and Tingting Zhu1, (1)Department of Plant Sciences, University of California, Davis, CA, (2)USDA ARS, Western Regional Research Center, Albany, CA, (3)University of Georgia, Athens, GA, (4)Dept of Statistics, Davis, CA, W459: International Sheep Genome Consortium (5)Institute of Experimental Botany, Olomouc, Czech Republic, (6)Dept of Genotype By Sequencing (GBS) Plant Sciences, Davis, CA, (7)INRA - UMR 1095 GDEC, Clermont-Ferrand, France, (8)China Agricultural University, Beijing, China, (9)University of Rudiger Brauning, AgResearch Ltd, Mosgiel, Otago, New Zealand California, Davis, CA, (10)School of Plant Sciences, iPlant Collaborative, Tucson, AZ, (11)Nanjing Agricultural University, Nanjing, China, (12)Chinese Academy of Agricultural Sciences, Beijing, China, (13)Plant Genome and Systems Biology, Helmholtz Center Munich, Neuherberg, Germany, (14)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (15)Johns Hopkins University, School of Medicine, Baltimore, MD, (16)University of Arizona/Bio5 Institute, Tucson, AZ, (17)Northwest A&F University, Yangling, China, (18)Department of Genetics, University of Georgia, Athens, GA, (19)University of Zurich, Zurich, Switzerland, (20)Cereal Research Centre, Morden, MB, Canada

174 W461: International Wheat Genome Sequencing Consortium (IWGSC) W465: International Wheat Genome Sequencing Consortium (IWGSC) A High Density GBS Map of Bread Wheat and Its Application for Genetic RNA-Seq Bulked Segregant Analysis Enables the Identification of High- Improvement of the Crop Resolution Genetic Markers for Breeding in Hexaploid Wheat Sukhwinder Singh1, Huihui Li1, Prashant Vikram1, Ravi P Singh2, Andrzej Ricardo H Ramirez-Gonzalez1, Vanesa Segovia2, Nicholas Bird3, Paul Killian3 and Peter Wenzl4, (1)CIMMYT, Texcoco, Mexico, (2)CIMMYT, Fenwick4, Sarah Holdgate5, Simon Berry4, Peter Jack6, Mario Caccamo1 and Mexico City, Mexico, (3)DArT, Camberra, Australia, (4)CIMMYT, Cristobal Uauy2, (1)The Genome Analysis Centre, Norwich, United Kingdom, TEXCOCO, Mexico (2)John Innes Centre, Norwich, England, (3)John Innes Centre, Norwuch, United Kingdom, (4)Limagrain UK Ltd, Market Rasen, United Kingdom, (5)NIAB, Cambridge, United Kingdom, (6)RAGT Seeds, Saffron Walden, W462: International Wheat Genome Sequencing Consortium (IWGSC) United Kingdom Exome Sequencing of Wheat Mutant Populations Opens a New Era for Wheat Functional Genetics W466: Int'l Phytomedomics and Nutriomics Consortium (ICPN) Jorge Dubcovsky, University of California Davis, Davis, CA Genetics Meets Nutriomics: Genomic-Assisted Marker Development for Nutritional Quantitative Traits W463: International Wheat Genome Sequencing Consortium (IWGSC) Yong Pyo Lim, Chungnam National University, Daejeon, South Korea Use of the Wheat Genome to Expedite the Identification of Disease Resistance Genes W467: Int'l Phytomedomics and Nutriomics Consortium (ICPN) Fiona Doohan1, Alexandre Perochon1, Ewen Mullins2, A Kahla3, L Gunupuru3 3 Transcriptomics Approach to Understand Differences in Phytonutrient and C Brennan , (1)University College Dublin, Dublin, Ireland, (2)Teagasc, Composition in Plants Grown Under Different Production Systems Carlow, Ireland, (3)UCD School of Biology and Environmental Science, Dublin, Ireland Amit Dhingra, Department of Horticulture, Washington State University, Pullman, WA W464: International Wheat Genome Sequencing Consortium (IWGSC) Susceptibility to Fusarium Head Blight By Wheat Is Regulated By W468: Int'l Phytomedomics and Nutriomics Consortium (ICPN) Silencing RNAs of Pathogen Origin Genetic Variation for High Beta-Carotene Accumulation in Crops Yang Yen, South Dakota State University, Brookings, SD Li Li, USDA-ARS/Cornell University, Ithaca, NY

W469: Int'l Phytomedomics and Nutriomics Consortium (ICPN) W473: IWGSC - Standards and Protocols Development and Use of Novel Subtracted Diversity Array for Chromosome 1B: A Step Further in the Sequencing of the Hexaploid Fingerprinting Medicinal Plants Wheat Genome Nitin Mantri, RMIT University, Melbourne, Victoria, Australia and Edwin Adriana Alberti1, Valerie Barbe1, Arnaud Couloux1, Frederic Choulet2, Sophie Pang, RMIT University, Bundoora, Australia Mangenot1, Karine Labadie1, Jean Marc Aury1, Romain Philippe2, Céline 1 1 3 3 4 Durand , Caroline Belser , Arnaud Bellec , Hélène Bergès , Zeev M Frenkel , Tzion Fahima4, Abraham B Korol5, International Wheat Genome Sequencing W470: Int'l Phytomedomics and Nutriomics Consortium (ICPN) Consortium6, Catherine Feuillet7, Etienne Paux2 and Patrick Wincker1, (1)CEA Breeding Lettuce to Maximize Nutrional Content Across Diverse - Genoscope, Evry, France, (2)INRA GDEC, Clermont-Ferrand, France, Environments (3)INRA - CNRGV, Castanet Tolosan, France, (4)University of Haifa, Haifa, Israel, (5)Institute of Evolution, University of Haifa, Haifa, Israel, (6)IWGSC, David W Still, Cal Poly Pomona, Pomona, CA Bethesda, MD, (7)Bayer CropScience, Morrisville, NC

W471: IWGSC - Standards and Protocols W474: IWGSC - Standards and Protocols Improving the Physical Map and Sequence of the 7DS with a BioNano BioNano Genome Map to Facilitate the Assembly of the Aegilops tauschii Map Genome 1 2 1 1 Hana Simkova , Alex Hastie , Helena Stankova , Jan Vrana , Marie Ming-Cheng Luo1, Tingting Zhu1, Karin R Deal1, Armond Murray1, Sonny 1 3 4 5 Kubaláková , Paul Visendi , Satomi Hayashi , Ming-Cheng Luo , Jacqueline Van1, Thanh C Ngo1, Shuyang Liu1, Juan C Rodriguez1, Hai Long1, Lichan 6 4 1 Batley , David Edwards and Jaroslav Dolezel , (1)Institute of Experimental Xiao1, Naxin Huo1, Luis Curiel1, Luxia Yuan1, Yi Wang1, Yong Q Gu2, Olin Botany, Olomouc, Czech Republic, (2)BioNano Genomics, San Diego, CA, Anderson2, Daniela Puiu3, Geo Pertea3, Steven L Salzberg3, Shuhong Ouyang4, (3)Australian Centre for Plant Functional Genomics, Brisbane, Australia, Zhenzhong Wang4, Yong Liang4, Qixin Sun4, Zhiyong Liu4, Long Mao5, (4)University of Queensland, Brisbane, Australia, (5)University of California, Zhengqiang Ma6 and Jan Dvorak1, (1)Department of Plant Sciences, University Davis, CA, (6)The University of Western Australia, Perth, WA, Australia of California, Davis, CA, (2)USDA ARS, Western Regional Research Center, Albany, CA, (3)Johns Hopkins University, School of Medicine, Baltimore, MD, (4)China Agricultural University, Beijing, China, (5)Chinese Academy of W472: IWGSC - Standards and Protocols Agricultural Sciences, Beijing, China, (6)Nanjing Agricultural University, Reference Assembly of Chromosome 7A as a Platform to Study Regions of Nanjing, China Agronomic Importance

Gabriel Keeble-Gagnere, Murdoch University, Perth, Australia

175 W475: IWGSC - Standards and Protocols W479: “It’s not just the data, it’s the analysis” - Why a Biology Using LTC Software for Physical Mapping and Assisting in Sequence Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Assembly Overview of the iPlant Collaborative Zeev M Frenkel1, Vladimir A Glikson2 and Abraham B Korol1, (1)Institute of Matthew Vaughn, Texas Advanced Computing Center, University of Texas, Evolution, University of Haifa, Haifa, Israel, (2)MultiQTL Ltd, Haifa, Israel Austin, TX

W476: IWGSC - Standards and Protocols W480: “It’s not just the data, it’s the analysis” - Why a Biology Progress in Sequencing and Scaffolding Chromosome 1A Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Functional Analysis of Your RNAseq Data Andrew G Sharpe, National Research Council Canada, Saskatoon, SK, Canada Fiona McCarthy, University of Arizona, Tucson, AZ

W477: IWGSC - Standards and Protocols W481: “It’s not just the data, it’s the analysis” - Why a Biology Application of RH Mapping in Wheat Genome Analysis Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Flash Demo: Annotating genomes with MAKER-P and the iPlant Vijay K Tiwari, Kansas State University, Manhattan, KS Discovery Environment

Sabarinath Subramaniam, University of Arizona, Tucson, AZ W478: IWGSC - Standards and Protocols

IWGSC Sequence Repository: How to Facilitate Pseudomolecule Assembly? W482: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Michael Alaux1, Frederic Choulet2, Loic Couderc1, Françoise Alfama1, 1 1 1 1 A Hybrid Approach to Assemble and Annotate the Brassica rapa Véronique Jamilloux , Thomas Letellier , Raphael Flores , Claire Guerche , Transcriptome in the Cloud through the iPlant Collaborative and XSEDE Mikael Loaec1, Etienne Paux2, Delphine Steinbach1 and Hadi Quesneville1, (1)INRA - URGI, Versailles, France, (2)INRA GDEC, Clermont-Ferrand, Upendra Kumar Devisetty, University of California, Davis, CA France

W483: “It’s not just the data, it’s the analysis” - Why a Biology W487: “It’s not just the data, it’s the analysis” - Why a Biology Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Flash Demo: Atmosphere Cloud Computing - Applied to Visualizing RNA- Flash Talk: An Ontology Approach to Comparative Phenomics in Plants Seq Data Eva Huala1, Anika Oellrich2, Ramona Walls3, Ethalinda Cannon4, Steven B Kapeel Chougule, Cold Spring Harbor Laboratory, Cold Spring Harbor Cannon5, Laurel Cooper6, Jack Gardiner7, Georgios Gkoutos8, Lisa Harper9, Laboratory, NY Mingze He4, Robert Hoehndorf10, Pankaj Jaiswal6, Scott R Kalberer5, Johnny 11 12 13 14 5 Lloyd , David Meinke , Naama Menda , Laura Moore , Rex T Nelson , Anuradha Pujar15 and Carolyn J Lawrence4, (1)Phoenix Bioinformatics, W484: “It’s not just the data, it’s the analysis” - Why a Biology Redwood City, CA, (2)Wellcome Trust Sanger Institute, Hinxton, United Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Kingdom, (3)The iPlant Collaborative, Tucson, AZ, (4)Iowa State University, Using iPlant Tools and Plastome Sequencing As a Springboard into Ames, IA, (5)USDA-ARS-CICGRU, Ames, IA, (6)Department of Botany & Comparative Genomics: Plastome Organization and Sequence for the Plant Pathology, Oregon State University, Corvallis, OR, (7)Iowa State Mimosoid Legume Leucaena trichandra University, Tucson, AZ, (8)Computer Science Department, Aberystwyth University, Aberystwyth, United Kingdom, (9)USDA ARS, Albany, CA, Donovan Bailey, New Mexico State University, Las Cruces, NM (10)King Abdullah University of Science & Technology, Thuwal, Saudi Arabia, (11)Michigan State University, East Lansing, MI, (12)Oklahoma State University, Stillwater, OK, (13)Boyce Thompson Institute for Plant Research, W485: “It’s not just the data, it’s the analysis” - Why a Biology Ithaca, NY, (14)Department of Botany and Plant Pathology, Oregon State Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets University, Corvallis, OR, (15)Cornell University, Ithaca, NY Flash Demo: Secure, Collaborative, Management of Your Life Sciences

Data with the Data Store W488: “It’s not just the data, it’s the analysis” - Why a Biology Jeremy DeBarry, University of Arizona, Tucson, AZ Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Life Sciences Cyberinfrastructure at Your Fingertips: Using Internet2 to W486: “It’s not just the data, it’s the analysis” - Why a Biology Power Scientific Collaboration Cyberinfrastructure is the Best Way to Meet the Challenges of Large Datasets Daniel B Taylor, Internet2, Washington, DC Utilizing iPlant to Unearth Long Non-Coding RNAs and Characterize

Their Evolution in the Plant Family Brassicaceae Andrew D Nelson1, Evan S Forsythe1, Eric Lyons2 and Mark A Beilstein1, (1)School of Plant Sciences, University of Arizona, Tucson, AZ, (2)School of Plant Sciences, iPlant Collaborative, Tucson, AZ

176 W489: Legumes W493: Legumes Introgression of a Rare Haplotype from Southeastern Africa to Breed Genome-Wide Identification of the Phaseolus vulgaris sRNAome using Cowpeas with Larger Seeds Small RNA and Degradome Sequencing Mitchell R Lucas, Bao Lam Huynh, Philip A Roberts and Timothy J Close, Damien Formey1, Luis P Iñiguez1, Georgina Navarrete-Estrada2, Pablo University of California, Riverside, CA Pelàez2, Ramanjulu Sunkar3, Federico Sanchez2, Jose L Reyes2 and Georgina 1 Hernandez , (1)Centro de Ciencias Genomicas, Universidad Nacional Autonoma de Mexico, Cuernavaca, Morelos, Mexico, (2)IBT-UNAM, W490: Legumes Cuernavaca, Mexico, (3)Oklahoma State University, Stillwater, OK The MSH1 System for Inducing Epigenetic Variation in Legume Systems Sally Mackenzie, Center for Plant Science Innovation, University of W494: Legumes Nebraska,, Lincoln, NE Integrated Epigenomic and Transcriptomic Profiling of the Resistance Response of Common Bean (Phaseolus vulgaris) to Bean Rust (Uromyces appendiculatus) W491: Legumes The Narrow-Leafed Lupin Genome Assembly, Transcriptome Sequencing Venu (Kal) Kalavacharla, Delaware State University, Dover, DE of Different Tissue Types and Generation of Gene-Based Molecular Markers W495: Maize 1 2 3 4 4 Lars Kamphuis , James Hane , Matthew N Nelson , Yao Ming , Jianbo Jian , Introductory Remarks Gagan Garg2, Lingling Gao2, Craig Atkins3 and Karam Singh1, (1)University of Western Australia, Institute of Agriculture & CSIRO Agriculture Flagship, Patrick S Schnable, Department of Agronomy, Iowa State University, Ames, Crawley, Australia, (2)CSIRO Agriculture Flagship, Wembley, Australia, IA (3)University of Western Australia, School of Plant Biology, Crawley, Australia, (4)Beijing Genome Institute, Shenzhen, China W496: Maize

Maize is not Arabidopsis W492: Legumes Role of Membrane Rafts during Legume Nodulation Nathan M Springer, University of Minnesota, St Paul, MN

Marc Libault, University of Oklahoma, Norman, OK

W497: Maize W502: Managing Crop Phenotype Data The Real Genes of Maize: Marrowing the Target Space for Genetic and The KDDArT Knowledge Discovery System Genomic Studies Grzegorz Uszynski and Andrzej Kilian, Diversity Arrays Technology Pty Ltd James C Schnable, University of Nebraska-Lincoln, Lincoln, NE (DArT PL), Canberra, Australia

W498: Maize W503: Managing Crop Phenotype Data Regulatory Networks Controlling Inflorescence Architecture Traits in Managing Phenotypic Data through the IBP's Breeding Management Maize System

Andrea L Eveland, Donald Danforth Plant Science Center, St Louis, MO Graham McLaren1, Jan Erik Backlund2, Mark Sawkins1, Rebecca Berrigan3 4 and Brent Whitney , (1)Generation Challenge Programme, Texcoco, Mexico, (2)CGIAR, Indianapolis, IN, (3)Leafnode Llc, Mill Valley, CA, (4)Leafnode W499: Maize Llc, San Francisco, CA The Maize Ligule: How to Draw a Line on a Leaf Michael Scanlon, Cornell University, Ithaca, NY W504: Managing Crop Phenotype Data Phenotypic Data Exchange and Processing Using ISA-Tab Standard: transPLANT Project Use Case with GnpISEphesis and Bii W500: Managing Crop Phenotype Data Breeding4Rice: Breeding Information Management System in a Process Cyril Pommier1, Pawel Krajewski2, Thomas Letellier1, Hanna Cwiek3, Célia Organization Michotey4, P Roumet5, Raphael Flores1, Guillaume Merceron6, Erik Kimmel1, Michael Alaux1, Delphine Steinbach1, Hadi Quesneville1 and Augustyn Marko Karkkainen and Eero Nissila, International Rice Research Institute, Markiewicz7, (1)INRA - URGI, Versailles, France, (2)Institute of Plant Metro Manila, Philippines Genetics PAS, Poznan, Poland, (3)Institute of Plant Genetics, Polish Academy of Science, Poznan, Poland, (4)INRA URGI, Versailles, France, (5)AGAP - INRA, Montpellier, France, (6)INRA – URGI, Versailles, France, (7)Poznan W501: Managing Crop Phenotype Data University of Life Sciences, Poznan, Poland Application Programming Interface (API) for Plant Breeding Data and

Software Tools W505: Managing Crop Phenotype Data Clay Birkett1, David Matthews1, Jean-Luc Jannink2 and Victoria Carollo Crop Data in Unity Blake3, (1)USDA-ARS, Ithaca, NY, (2)Cornell University, Ithaca, NY, (3)USDA ARS WRRC, Albany, CA Yaniv Semel, Phenome Networks, Rehovot, Israel

177 W506: Mutation Screening W510: Mutation Screening The Legume Non-Transgenic LORE1 Mutant Collection Viral-Mediated Genome Editing and Regulation in Plants Using CRISPR/Cas System Anna Malolepszy, Dorian F Urbanski, Niels Sandal, Terry Mun, Jens Stougaard and Stig U Andersen, Aarhus University, Aarhus, Denmark Magdy Mahfouz, Biological and Environmental Sciences and Engineering Division, Thuwal, Saudi Arabia W507: Mutation Screening Single Molecule Sequencing of Somatic Structural Variations W511: Mutation Screening High Throughput Sequence-Based Screening with Keypoint Mutation Anand Patel, Bioinformatics and Systems Biology Program, Moores Cancer Breeding Center, Dept Computer Science, UCSD, La Jolla, CA Michiel van Eijk, KeyGene, Wageningen, Netherlands W508: Mutation Screening A Barley Root Mutants Collection for Fast Forward Genetics W512: NCBI Genome Resources

1 1 2 1 Improving the Flow of Data to National Center of Biotechnology Sara G Milner , Riccardo Bovina , Carlos Busanello , Valentina Talame , Information Sequence Repositories, SRA and Genbank Roberto Tuberosa1, Nils Stein3 and Silvio Salvi1, (1)DipSA - University of Bologna, Bologna, Italy, (2)Department of Plant Science, University Federal of Ilene Mizrachi, National Center for Biotechnology Information Pelotas, Capão do Leão-RS, Brazil, (3)Leibniz Institute of Plant Genetics and (NCBI/NLM/NIH), Bethesda, MD Crop Plant Research (IPK), Stadt Seeland, Germany W513: NCBI Genome Resources W509: Mutation Screening Variation at NCBI: Resources, Tools and Submissions A Soybean Cyst Nematode Resistance Gene Points to a New Mechanism of Plant Resistance to Pathogens Jennifer Lee, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD Khalid Meksem, Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL W514: NCBI Genome Resources

Update on the Eukaryotic Genome Annotation Pipeline Francoise Thibaud-Nissen, NCBI/NLM/NIH, Bethesda, MD

W515: NCBI Genome Resources W520: New Approaches for Developing Disease Resistance in Cereals From Genes to Genomes – New Features and Data Access Moving Forward: Metabolic Engineering for Disease Resistance

Kim D Pruitt1, Terence D Murphy1 and Paul Kitts2, (1)National Center for Anne Osbourn, John Innes Institute, Norfolk, United Kingdom Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (2)NIH/NLM/NCBI, Bethesda, MD W521: New Approaches for Developing Disease Resistance in Cereals

Allele Mining and Enhanced Genetic Recombination for Stress Resistant W516: NCBI Genome Resources Crops Annual Report Hei Leung, International Rice Research Institute, Los Banos, Philippines Tatiana Tatusova, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD W522: Next Generation Genome Annotation and Analysis

Nuances in Plant Genome Annotation: Those Duplicated and Dead Genes W517: New Approaches for Developing Disease Resistance in Cereals Editing the Wheat Genome for Disease Resistance Shin-Han Shiu, Michigan Stat University, Lansing, MI

Jin-Long Qiu, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China W523: Next Generation Genome Annotation and Analysis Transposon Density Affects Homeolog Specific Gene Expression in Allopolyploid Monkeyflower (Mimulus) W518: New Approaches for Developing Disease Resistance in Cereals Rust Proteomics: Tools to Understand Effector Molecules Joshua Puzey, College of William and Mary, Williamsburg, VA

Diana Garnica, College of Agricultural & Marine Sciences, Muscat, Oman and John P Rathjen, The Australian National University, Canberra, Australia

W519: New Approaches for Developing Disease Resistance in Cereals Developing new tools for interrogating cereal invaders Diane Saunders, The Genome Analysis Centre, Norwich, United Kingdom

178 W524: Next Generation Genome Annotation and Analysis W526: Non-Seed Plants Transposable Element Islands Facilitate Adaptation to Novel Klebsormidium flaccidum Genome Reveals Genome Evolution for Plant Environments in an Invasive Species Terrestrial Adaptation Lukas Schrader1, Jay W Kim2, Daniel D Ence3, Aleksey Zimin4, Antonia Koichi Hori1, Satoshi Kondo1, Kinuka Ohtaka1, Noriaki Tounosu1, Tei Klein1, Katharina Wyschetzki1, Tobias Weichselgartner1, Carsten Kemena5, Watanabe1, Ken Kurokawa2 and Ohta Hiroyuki1, (1)Department of Biological Johannes Stökl1, Eva Schultner6, Yannick Wurm7, Christopher D Smith8, Mark Sciences, Tokyo Institute of Technology, Yokohama, Japan, (2)Earth-Life Yandell3, Jürgen Heinze1, Jürgen Gadau9 and Jan Oettler1, (1)Institut für Science Institute, Tokyo Institute of Technology, Tokyo, Japan Zoologie, Universität Regensburg, Regensburg, Germany, (2)Department of Biomolecular Engineering, University of California at Santa Cruz, Santa Cruz, Santa Cruz, CA, (3)Eccles Institute of Human Genetics, University of Utah, W527: Non-Seed Plants Salt Lake City, UT, (4)Institute for Physical Science and Technology, The Chara braunii Genome University of Maryland, College Park, MD, (5)Institute for Evolution and Biodiversity, Westfällische Wilhelms-Universität, Munster, Germany, Tomoaki Nishiyama, Kanazawa University, Kanazawa, Japan, Atsushi (6)Department of Biosciences, University of Helsinki, Helsinki, Finland, Toyoda, Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Japan, (7)School of Biological and Chemical Sciences, Queen Mary University of Yutaka Suzuki, University of Tokyo, Kashiwa, Japan, Asao Fujiyama, London, London, United Kingdom, (8)Department of Biology, San Francisco Comparative Genomics Laboratory, National Institute of Genetics, Mishiyama, State University, San Francisco, CA, (9)Arizona State University, Tempe, AZ Japan, Stefan A Rensing, Faculty of Biology, University of Marburg, Marburg, Germany and Hidetoshi Sakayama, Kobe University, Kobe, Japan

W525: Next Generation Genome Annotation and Analysis W528: Non-Seed Plants The Spotted Gar Provides Connectivity Among Vertebrate Genomes and Insights into Evolution By Genome Duplication in Fish The Marchantia Genome Project Ingo Braasch, Peter Batzel, Spotted Gar Genome Consortium and John H Jim Haseloff, University of Cambridge, Cambridge, United Kingdom Postlethwait, University of Oregon, Eugene, OR W529: Non-Seed Plants The Sphagnum Genome Project

Dave Weston1, Jonathan Shaw2, Jeremy Schmutz3, Shengqiang Shu4, Jerry Jenkins5 and Jane Grimwood3, (1)Oak Ridge National Laboratory, Oak Ridge, TN, (2)Duke University, Durham, NC, (3)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (4)DOE Joint Genome Institute, Walnut Creek, CA, (5)DOE Joint Genome Institute, Huntsville, AL

W530: Non-Seed Plants W534: NRSP-8 Animal Genome The Ceratodon Genome Project Integrative Genomics to Provide Basic and Applied Knowledge to Control Marek's Disease in Chicken Stuart McDaniel, University of Florida, Gainesville, FL Hans Cheng, USDA, ARS, ADOL, East Lansing, MI W531: Non-Seed Plants The Physcomitrella patens Flagship Genome Revisited Based on W535: NRSP-8 Animal Genome Pseudochromosomes The Functional Annotation of Animal Genomes (FAANG) Initiative Daniel Lang, University of Freiburg, Plant Biotechnology, Freiburg, Germany Elisabetta Giuffra1, Sylvain Foissac2, Ole Madsen3, Martien AM Groenen3, and Nico van Gessel, Plant Biotechnology, University of Freiburg, Freiburg, Richard Crooijmans3, Pablo J Ross4, Ian Korf5 and Huaijun Zhou6, (1)INRA, Germany UMR de Génétique Animale et Biologie Intégrative, Jouy-en-Josas, France, (2)INRA - GenPhySE, Castanet Tolosan, France, (3)Wageningen University, Wageningen, Netherlands, (4)Animal Science, University of California, Davis, W532: NRSP-8 Animal Genome CA, (5)The Genome Center, University of California, Davis, Davis, CA, Improving the Reference - Better Genomes for the Sheep and the Cow (6)University of California, Davis, CA

Kim Worley, Baylor College of Medicine, Houston, TX W536: Oats

Oat Global: Uniting the Oat World at OatGlobalorg W533: NRSP-8 Animal Genome Genomic Selection 20 Gabriele Gusmini, PepsiCo, St Paul, MN, Catherine Howarth, IBERS, Aberystwyth University, Aberystwyth, United Kingdom, Nicholas A Tinker, 1 1 2 3 John Hickey , John A Woolliams , Matthew Cleveland , Andreas Kranis , Agriculture and Agri-Food Canada, Ottawa, ON, Canada, Jack K Okamuro, 1 4 1 Janez Jenko , Miguel Perez Enciso and Gregor Gorjanc , (1)The Roslin USDA ARS, Beltsville, MD, Ben Boroughs, NAMA, TBA, DC, Luiz Institute, University of Edinburgh, Midlothian, United Kingdom, (2)Genus plc, Federizzi, UFRGS, TBA, Brazil, A Bruce Roskens, Grain Millers, Inc, Hendersonville, TN, (3)Aviagen Ltd, Midlothian, United Kingdom, (4)Centre Naperville, IL, Pamela Zwer, SARDI, TBA, Australia and Jim Dyck, Oat for Research in Agrigenomics (CRAG) and ICREA, Barcelona, Spain Advantage, TBA, SK, Canada

179 W537: Oats W539: Oats Oat Global and T3-Oat: Relational Data for Oat Genotypes and Characterization of Hemicellulose and Starch Biosynthesis Genes in Avena Phenotypes Melissa C Fogarty1, Cassandra Anne Dohse1, Evan Braithwaite1, Jeff Clare Saied1, Yung-Fen Huang2, Victoria Carollo Blake3, David Matthews4, Maughan1, Eric Jackson2 and Eric N Jellen1, (1)Brigham Young University, Clay Birkett4, Nicholas A Tinker2 and Jean-Luc Jannink4, (1)Cornell Provo, UT, (2)General Mills, Kannapolis, NC University, Dept of Plant Breeding and Genetics, Ithaca, NY, (2)Agriculture and Agri-Food Canada, Ottawa, ON, Canada, (3)USDA ARS WRRC, Albany, CA, (4)USDA-ARS, Ithaca, NY W540: Oats Progress in Oat FISHIS and Chromosome Specific Sequencing W538: Oats Debora Giorgi1, Anna Farina1, Tim Langdon2, Matthew Hegarty2, Maciej 2 1 Ode to an Oat: Theme and Variations on a Map Bisaga and Sergio Lucretti , (1)ENEA - Italian Agency for New Technologies, Rome, Italy, (2)IBERS, Aberystwyth University, Aberystwyth, Shawn Chaffin1, Yung-Fen Huang2,3, Scott Smith4, Robert Reid1, Ebrahiem United Kingdom 5 6 7 1 Babiker , Gnanesh Nanjappa , Bradley Foresman , Steven Blanchard , Jeremy Jay8, Charlene P Wight3, Shiaoman Chao9, Rebekah Oliver10, Emir Islamovic11, Kathy L Klos5, Fred L Kolb7, Curt A McCartney6, J Michael Bonman5, Cory W541: Oats Brouwer12, Rick Jellen13, Jesse Poland14, Tzung-Fu Hsieh4, Ryan Brown15, Local GBS Haplotypes in Hexaploid Oat: How and Why? Joseph Lutz16, Eric Jackson15, Nicholas A Tinker3 and Jessica Schlueter1, (1)University of North Carolina at Charlotte, Charlotte, NC, (2)Department of Wubishet Abebe Bekele, Agriculture and Agri-Food Canada, ECORC, Ottawa, Agronomy, National Taiwan University, Taipei, Taiwan, (3)Agriculture and ON, Canada and Nicholas A Tinker, Agriculture and Agri-Food Canada, Agri-Food Canada, Ottawa, ON, Canada, (4)North Carolina State University, Ottawa, ON, Canada Kannapolis, NC, (5)USDA-ARS, Aberdeen, ID, (6)Agriculture and Agri-Food Canada, Winnipeg, MB, Canada, (7)University of Illinois, Urbana, IL, W542: Organellar Genetics (8)Univeristy of North Carolina, Charlotte, Kannapolis, NC, (9)USDA-ARS, Fargo, ND, (10)North Dakota State University, Fargo, ND, (11)BASF, Predicting and Verifying Binding Sites for Pentatricopeptide Repeat (PPR) Research Triangle Park, NC, (12)University of North Carolina at Charlotte, Proteins Kannapolis, NC, (13)Brigham Young University, Provo, UT, (14)Kansas State University, Manhattan, KS, (15)General Mills, Kannapolis, NC, (16)General Ian Small, The University of Western Australia, Crawley, WA, Australia Mills, LeSueur, MN

W543: Organellar Genetics W547: Ornamentals The Mitochondrial Genome Evolution of the Geranium Family: Elevated Wide Cross-Transferability of SSR Loci from Three Viburnum Species Substitution Rates Decrease Genomic Complexity Deborah Dean1, Timothy A Rinehart2, William Klingeman3, Bonnie Ownley4, Felix Grewe1, Emily A Gubbels2 and Jeffrey P Mower2, (1)The Field Museum Denita Hadziabdic4, Phillip Wadl5, Dennis Gray6 and Robert N Trigiano7, of Natural History, Chicago, IL, (2)University of Nebraska-Lincoln, Lincoln, (1)Department of Entomology and Plant Pathology, University of Tennessee, NE Knoxville, TN, (2)USDA-ARS Southern Horticultural Laboratory, Poplarville, MS, (3)University or Tennessee, Knoxville, TN, (4)University of Tennessee, Knoxville, TN, (5)Department of Entomology and Plant Pathology, University W544: Organellar Genetics of Tennessee, Knoxville, TN, (6)University of Florida, Apopka, FL, Understanding the Role of Cytoplasmic Genomes in Stress Tolerance in (7)University of Tennessee Dept of Entomology and Plant Pathology, Wheat Knoxville, TN

Marisa Elena Miller, University of Minnesota/USDA-ARS, St Paul, MN, Katie L Liberatore, USDA-ARS Cereal Disease Laboratory, St Paul, MN and W548: Ornamentals Shahryar F Kianian, USDA ARS, Saint Paul, MN Ambient Temperature Enhanced Freezing Tolerance of Chrysanthemum dichrum CdICE1 Overexpressing Arabidopsis via miR398 W545: Organellar Genetics Sumei Chen and Fadi Chen, Nanjing Agricultural University, Nanjing, China The Mosaic Mutants of Cucumber: A Method to Produce Mitochondrial Knock-Downs W549: Ornamentals Angel Del Valle Echevarria, University of Wisconsin-Madison, Madison, WI, Genetic Introgression from Horticultural Varieties to Wild Species in Grzegorz Bartoszewski, Warsaw University of Life Sciences, Warsaw, Poland Japanese Evergreen Azalea and Michael J Havey, USDA-ARS and University of Wisconsin, Madison, WI Takashi Handa, School of Agriculture, Meiji University, Kawasaki, Japan W546: Ornamentals EST-SSR Development and Validation in Azalea Breeding Populations W550: Ornamentals from Whole Transcriptome Sequencing Genome Size and Chromosome Number Variation Among Caladium Species and Somaclonal Variants Alexander Quentin Susko, University of Minnesota, St Paul, MN 1 2 1 Zhe Cao , Shunzhao Sui and Zhanao Deng , (1)University of Florida, Wimauma, FL, (2)Southwest University, Chongqing, China

180 W551: Ornamentals W554: Palm Genomics & Genetics Multi-Pathotype Resistance to Black Spot in Roses Conferred By the Rdr1 Genomic Selection for Heterosis without Dominance in Multiplicative R-Gene-Family Traits: Case Study of Bunch Production in Oil Palm Thomas Debener, Leibniz University of Hannover, Hannover, Germany David Cros1, Marie Denis1, Jean-Marc Bouvet1 and Leopoldo Sanchez2, (1)CIRAD, MONTPELLIER, France, (2)INRA, ORLEANS, France W552: Palm Genomics & Genetics A Story of Flasks and Flowers: New Perspectives in the Search for W555: Palm Genomics & Genetics Markers of the Mantled Somaclonal Variation of Oil Palm Genome-Wide Association Study of Oil Palm Mesocarp Oil Yield Content and Its Application for Marker Selection Estelle Jaligot1, Wei Yeng Hooi2, Frédérique Richaud1, Mawussé DT Agbessi3, Yen Yen Kwan4, Thierry Beulé3, Myriam Collin3, Emilie Debladis5, Chee-Keng Teh, Sime Darby Technology Centre Sdn Bhd, Serdang, Malaysia 3 6 7 François Sabot , Olivier Garsmeur , Angélique D’Hont , Sharifah Shahrul Rabiah Syed Alwee8 and Alain Rival1, (1)CIRAD, UMR DIADE, MONTPELLIER, France, (2)FELDA - CIRAD, MONTPELLIER, France, W556: Palm Genomics & Genetics (3)UMR DIADE, Montpellier, France, (4)Felda Global Ventures Research and The Identification of the Fruit Colour Gene of Oil Palm and Its Development Sdn Bhd, Bandar Enstek, Malaysia, (5)IRD, UMR DIADE, Implications in Improving Palm Oil Yield MONTPELLIER, France, (6)CIRAD, UMR AGAP, Montpellier, France, 1 1 1 (7)UMR AGAP, Montpellier, France, (8)FELDA Biotechnology Centre, Rajinder Singh , Eng-Ti L Low , Leslie Cheng-Li Ooi , Meilina Ong 1 1 1 Bandar Enstek, Malaysia Abdullah , Rajanaidu Nookiah , Ngoot-Chin Ting , Mohamad Arif Abdul Manaf1, Jayanthi Nagappan1, Muhammad Arief Budiman2, Nathan Lakey2, 2 2 2 2 Blaire Bacher , Andrew Van Brunt , Steven W Smith , Jared Ordway , Rob W553: Palm Genomics & Genetics Martienssen3 and Ravigadevi Sambanthamurthi1, (1)Malaysian Palm Oil Genomic Characterization of E oleifera Polymorphic Sites Based on Board, Selangor, Malaysia, (2)Orion Genomics LLC, St Louis, MO, (3)HHMI- Physical Mapping to the E guineensis Genome GBMF Cold Spring Harbor Laboratory, Cold Spring Harbor, NY

Jaire A F Filho1, Eduardo Fernandes Formighieri2, Manoel Teixeira Souza Junior2 and Alexandre Alonso Alves2, (1)Embrapa Agroenergy, Brasilia, Brazil, (2)Embrapa Agroenergy, Brasília, Brazil

W557: Palm Genomics & Genetics W559: Palm Genomics & Genetics Identification and Development of New Polymorphic Microsatellite Ancient Population Structure in Phoenix dactylifera Revealed By Genome- Markers for Main Causal Agent of Oil Palm Basal Stem Rot Disease using Wide Genotyping of Geographically Diverse Date Palm Cultivars Ganoderma boninense Genome Assembly Lisa Sara Mathew1, Michael Seidel2, Manuel Spannagl3, Maria Fernanda Maxime Mercière1, Anthony Laybats2, Cathy Carasco-Lacombe2, Joon Torres1, Robert R Krueger4, Georg Haberer5, Klaus FX Mayer6, Karsten Sheong Tan3, Christophe Klopp4, Tristan Durand-Gasselin5, Sharifah Shahrul Suhre1, Yasmin A Mohamoud1 and Joel A Malek7, (1)WCMC-Qatar, Doha, Rabiah Syed Alwee6, Létizia Camus-Kulandaivelu2 and Fréderic Breton2, Qatar, (2)Helmholtz Zentrum München, Institute of Bioinformatics and (1)Cirad, Montpellier, France, (2)CIRAD, Montpellier, France, (3)Felda Global Systems Biology / MIPS, Neuherberg, Germany, (3)Institute of Bioinformatics Ventures Research and Development Sdn Bhd, Negeri Sembilan, Malaysia, & Systems Biology, MIPS, Neuherberg, Germany, (4)USDA-ARS National (4)INRA - SIGENAE, Castanet Tolosan, France, (5)PalmElit SA, Clonal Germplasm Repository for Citrus & Dates, RIVERSIDE, CA, Montferrier/Lez, France, (6)FELDA Biotechnology Centre, Bandar Enstek, (5)Helmholtz Zentrum München, Munich, Germany, (6)Plant Genome and Malaysia Systems Biology, Helmholtz Center Munich, Neuherberg, Germany, (7)Weill Cornell Medical College in Qatar, Qatar, Qatar W558: Palm Genomics & Genetics Phylogeny and Historical Biogeography of the Cocosoid Palms (Arecaceae, W560: Palm Genomics & Genetics Arecoideae, Cocoseae) Inferred from Sequences of Six WRKY Gene National Date Palm Germplasm Repository Family Loci Robert R Krueger, USDA-ARS National Clonal Germplasm Repository for Alan W Meerow1, Larry Noblick2, Dayana E Salas-Leiva3, Vanessa Sanchez4, Citrus & Dates, RIVERSIDE, CA 5 5 4 Javier Francisco-Ortega , Brett Jestrow and Kyoko Nakamura , (1)USDA, ARS, SHRS, Miami, FL, (2)Montgomery Botanical Center, Miami, FL, (3)Dept Biological Sciences Florida International University, Miami, FL, W561: Palm Genomics & Genetics (4)USDA-ARS-SHRS, Miami, FL, (5)Kushlan Tropical Science Institute, Sustainable and Genomics Approaches for Date Palm Improvement to Fairchild Tropical Botanic Garden, Coral Gables, FL Biotic and Abiotic Stresses

Osman Radwan, University of Illinois at Urbana-Champaign, Urbana, IL and Fatima Al-Naemi, College of Arts and Sciences, Qatar University, Doha, Qatar

181 W562: Perennial Grasses W565: Perennial Grasses Genetic Engineering of Perennial Grasses: Trait Modification, Transgene Genome-Wide Association Study Based on Multiple Imputation with Low- Containment and Gene Discovery in Turf Species Depth Sequencing Data: Application to Biofuel Traits in Reed Canarygrass Hong Luo, Clemson University, Clemson, SC Guillaume P Ramstein, University of Wisconsin-Madison, Madison, WI W563: Perennial Grasses Genomics and Breeding of Miscanthus W566: Perennial Grasses Expanding the Breeder's Toolbox: Use of the Model Perennial Grass Erik J Sacks1, Lindsay V Clark2, Joe E Brummer3, Katarzyna Glowaca4, 5 6 7 8 7 Brachypodium sylvaticum to Study Abiotic Stress and to Develop Megan Hall , Kweon Heo , Siyao Liu , Junhua Peng , Shailendra Sharma , Biotechnological Tools for Switchgrass Improvement Shiveta Sharma1, Toshihiko Yamada9, Ji Hye Yoo6, Chang Yeon Yu6, Hua Zhao10 and Stephen Long2, (1)Energy Biosciences Institute, University of Ray Collier1, Maureen Daley2, Sean Gordon3, Richard Bryan Hernandez2, Illinois, Urbana, IL, (2)University of Illinois, Urbana-Champaign, Urbana, IL, María Reguera2, Nir Sade2, Matthew Wright2, Sangwoong Yoon1, Eduardo (3)Colorado State University, Fort Collins, CO, (4)University of Illinois Blumwald2, Christian Tobias1, John Vogel3 and Roger Thilmony1, (1)USDA- Urbana-Champaign, Urbana, IL, (5)Bio Architecture Lab, Berkeley, CA, ARS, Albany, CA, (2)Dept of Plant Sciences, University of California, Davis, (6)Kangwon National University, Chuncheon, South Korea, (7)University of CA, (3)DOE Joint Genome Institute, Walnut Creek, CA Illinois, Urbana, IL, (8)Huazhong Agricultural University, Wuhan, Hubei, China, (9)Hokkaido University, Sapporo, Hokkaido, Japan, (10)Huazhong Agricultural University, Wuhan, China W567: Perennial Grasses Detecting Genetic Associations with Phenology in Switchgrass Using Exome-Capture W564: Perennial Grasses 1 2 3 An Association Mapping Approach on Cell Wall Digestibility and Plant Paul Grabowski , Joseph Evans , Chris Daum , Govindarajan Kunde- Ramamoorthy3, Shweta Deshpande3, Kerrie W Barry3, Guillaume P Ramstein4, Architecture Gives Insight in Yield, Persistency and Forage Quality in 2 2 5 6 Perennial Ryegrasses Emily Crisovan , Brieanne Vaillancourt , Jerome Cherney , Denise Costich , Edward S Buckler7, Shawn Kaeppler4, C Robin Buell2, Yiwei Jiang8 and Hilde Muylle1, Tom Ruttink1, Frederik van Parijs1, Sabine Van Glabeke1, Michael Casler1, (1)USDA-ARS, Madison, WI, (2)Michigan State University, Elisabeth Veeckman2, Annelies Haegeman1, Stephen Byrne3, Torben Asp4 and East Lansing, MI, (3)DOE Joint Genome Institute, Walnut Creek, CA, Isabel Roldan-Ruiz1, (1)ILVO-Plant Sciences Unit-Growth and Development, (4)University of Wisconsin-Madison, Madison, WI, (5)Cornell University, Melle, Belgium, (2)ILVO-Plant Sciences Unit-Growth and Development, Ithaca, NY, (6)Centro Internacional de Mejoramiento de Maíz y Trigo Melle, Belgium, (3)Aarhus University, Slagelse, Denmark, (4)Molecular (CIMMYT), Mexico City, Mexico, (7)Institute for Genomic Diversity, Cornell Biology and Genetics, Aarhus University, Slagelse, Denmark University, Ithaca, NY, (8)Purdue University, West Lafayette, IN

W568: Pine Genome Reference Sequence W569: Pine Genome Reference Sequence A Reference Genome Sequence for Sugar Pine Sugar Pine Annotation

Kristian Stevens1, Jill Wegrzyn2, Marc Crepeau3, Daniela Puiu4, Aleksey Jill Wegrzyn1, Kristian Stevens2, Robin Paul3, Daniel Gonzalez-Ibeas3, Pedro J Zimin5, Charis Cardeno1, Ann Holtz-Morris6, Maxim Koriabine6, Pedro J Martínez-García4, John Liechty5, Hans Vasquez-Gross6, Sowmya Kuruganti3, Martínez-García7, Pieter J deJong6, James A Yorke8, Steven L Salzberg4, Emily Grau7, Carol Loopstra8, Aleksey Zimin9, James A Yorke10, Marc Charles H Langley3 and David Neale9, (1)University of California, Davis, Crepeau11, Daniela Puiu12, Carson Holt13, Mark Yandell14, Steven L Salzberg12, Davis, CA, (2)University of Connecticut, Storrs, CT, (3)Department of Pieter J deJong15, Keithanne Mockaitis16, Dorrie Main17, Charles H Langley11 Evolution and Ecology, University of California, Davis, Davis, CA, (4)Johns and David Neale18, (1)Department of Ecology and Evolutionary Biology - Hopkins University, School of Medicine, Baltimore, MD, (5)Institute for University of Connecticut, Storrs, CT, (2)University of California, Davis, Physical Science and Technology, University of Maryland, College Park, MD, Davis, CA, (3)Department of Ecology and Evolutionary Biology, University of (6)Children's Hospital Oakland Research Institute, Oakland, CA, Connecticut, Storrs, CT, (4)Department of Plant Sciences University of (7)Department of Plant Sciences University of California, Davis, CA, California, Davis, CA, (5)Department of Plant Sciences, University of (8)University of Maryland, College Park, MD, (9)Dept Plant Sciences California, Davis, Davis, CA, (6)University of California Davis, Davis, CA, University of California, Davis, CA (7)UC Davis, Davis, CA, (8)Texas A&M University, College Station, TX, (9)Institute for Physical Science and Technology, University of Maryland, College Park, MD, (10)Institute for Physical Science and Technology and Departments of Mathematics and Physics, University of Maryland, College Park, MD, (11)Department of Evolution and Ecology, University of California, Davis, Davis, CA, (12)Johns Hopkins University, School of Medicine, Baltimore, MD, (13)University of Utah, Salt Lake City, UT, (14)USTAR Center for Genetic Discovery, University of Utah, Salt Lake City, UT, (15)Children's Hospital Oakland Research Institute, Oakland, CA, (16)Department of Biology, Indiana University, Bloomington, IN, (17)Washington State University, Pullman, WA, (18)Dept Plant Sciences University of California, Davis, CA

W570: Pine Genome Reference Sequence Loblolly Pine Genome v20 Aleksey Zimin, Institute for Physical Science and Technology, University of Maryland, College Park, MD

182 W571: Pine Genome Reference Sequence W575: Plant and Animal Paleogenomics GenSAS Copy Number Variation in Livestock and Companion Animals: A Window to Domestication and Other Evolutionary Processes Dorrie Main1, Stephen P Ficklin1, Taein Lee2, Jodi L Humann1, Chun-Huai Cheng1, Jill Wegrzyn3 and David Neale4, (1)Washington State University, Marcel Amills, Center for Research in Agricultural Genomics, BARCELONA, Pullman, WA, (2)WSU, Pullman, WA, (3)University of Connecticut, Storrs, Spain CT, (4)Dept Plant Sciences University of California, Davis, CA W576: Plant and Animal Paleogenomics W572: Pine Genome Reference Sequence Dosage Sensitive Genes in Evolution and Disease Genomics and Reciprocal Illumination: The Study of Local Adaptation Across an Understudied Clade of Pines Aoife McLysaght, Smurfit Institute of Genetics, Dublin, Ireland

Andrew J Eckert, Virginia Commonwealth University, Richmond, VA W577: Plant and Animal Paleogenomics

Genic GC3 Content and DNA Methylation Patterns in Plant and Animal W573: Pine Genome Reference Sequence Genomes’ The Alluring Simplicity and Complex Reality of Adaptation to Climate in Lodgepole Pine Matteo Pellegrini, University of California, Los Angeles, Los Angeles, CA

Sally N Aitken1, Sam Yeaman1, Kathryn A Hodgins2, Katie Lotterhos3, Haktan Suren4, Kristin Nurkowski5, Jason Holliday4, Loren H Rieseberg1, Andreas W578: Plant and Animal Paleogenomics Hamann6 and Michael C Whitlock1, (1)University of British Columbia, Conserved and Divergent Features of Land Plant miRNAs and Vancouver, BC, Canada, (2)Monash University, Clayton, Australia, (3)Wake Endogenous siRNAs Forest University, Winston-Salem, NC, (4)Virginia Tech University, Blacksburg, VA, (5)Monash University, Melbourne, Australia, (6)University of Michael Axtell, Penn State University, University Park, PA Alberta, Edmonton, AB, Canada W579: Plant and Animal Paleogenomics W574: Plant and Animal Paleogenomics Major Trends in Genome Evolution of Crucifers Key Aspects of the Plant Genomes Martin A Lysak, CEITEC, Masaryk University, Brno, Czech Republic Gerald A Tuskan, Oak Ridge National Laboratory, Oak Ridge, TN

W580: Plant Chromosome Biology W584: Plant Chromosome Biology Construction and Applications of Engineered Minichromosomes in Plants Regulation of Meiotic Chromosome Condensation Progression by the Arabidopsis MMD1 Protein and Its Interacting Protein James A Birchler, University of Missouri, Columbia, MO Jun Wang, Baixiao Niu, Jiyue Huang, Juanying Ye, Yingxiang Wang and Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ, W581: Plant Chromosome Biology Shanghai, China Maize siRNAs are Associated with Euchromatin-like Environments that have High Accessibility and Relatively Low H3K9me2 W585: Plant Chromosome Biology Jonathan I Gent1, Thelma F Madzima2, Rechian Bader3, Matthew R Kent1, 1 3 2 1 Sequential De Novo Centromere Formation and Inactivation on a Xiaoyu Zhang , Maike Stam , Karen M McGinnis and R Kelly Dawe , Chromosomal Fragment in Maize (1)University of Georgia, Athens, GA, (2)Florida State University, Tallahassee, FL, (3)Universiteit van Amsterdam, Amsterdam, Netherlands Yalin Liu, Institute of Genetics and Developmental Biology, Beijing, China, Handong Su, Institute of Genetics and Developmental Biology, Beijing, China, Junling Pang, institute of genetics and developmental biology, beijing, China, W582: Plant Chromosome Biology Zhi Gao, University of Missouri-Columbia, Columbia, MO, Xiu-Jie Wang, Impacts of Maize Domestication and Breeding on Neocentromere Institute of Genetics and Developmental Biology, Chinese Academy of Formation Sciences, beijing, China, James A Birchler, University of Missouri, Columbia, MO and Fangpu Han, Chinese Academy of Sciences, Beijing, China Gernot Presting, Kevin Schneider and Zidian Xie, University of Hawaii,

Honolulu, HI W586: Plant Cytogenetics

How Can We Use Plant Cytogenetics to Solve Problems in Practical Plant W583: Plant Chromosome Biology Breeding? Telomere-Centric Genome Repatterning Determines Recurring Chromosome Number Reductions during the Evolution of Eukaryotes Steve Barnes, SESVANDERHAVE NV, Tienen, Belgium

1 2 2 3 2 Xiyin Wang , Dianchuan Jin , Zhenyi Wang , Hui Guo , Lan Zhang , Li Wang2, Jingping Li4 and Andrew H Paterson1, (1)Plant Genome Mapping W587: Plant Cytogenetics Laboratory, University of Georgia, Athens, GA, (2)Hebei United University, Function of DNA Synthesis Factors in Meiotic Recombination Tangshan, China, (3)University of Georgia, Athens, GA, (4)Plant Genome Mapping Lab - University of Georgia, Athens, GA Jiyue Huang, Zhihao Cheng, Cong Wang, Yue Hong, Rongyan Xu, Hang Su, Yingxiang Wang and Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ, Shanghai, China

183 W588: Plant Cytogenetics W592: Plant Dormancy Workshop Effect of the Boy-Named Sue Locus on Polyploid Meiosis in Arabidopsis Deciphering the Integrated Regulation of Dormancy, Cold Hardiness, and Growth in Apple Isabelle M Henry1, Brian P Dilkes2, Jian Gao1 and Luca Comai1, (1)Plant Biology and Genome Center, UC Davis, Davis, CA, (2)Purdue University, Michael Wisniewski1, Timothy Artlip2 and John L Norelli1, (1)USDA-ARS, West Lafayette, IN Kearneysville, WV, (2)USDA-ARS-AFRS, Kearneysville, WV

W589: Plant Cytogenetics W593: Plant Dormancy Workshop Challenging Our View on Meiosis - Luzula elegans, a Plant with a A RNAseq Approach to Decipher the Molecular Mechanisms Involved in Holocentric Chromosome Structure, Shows Alternative Meiotic Dormancy Regulation in the Fagaceae Family Chromatid Segregation Gregoire Le Provost, INRA, BIOGECO, UMR 1202, CESTAS, France, Stefan Heckmann1, Maja Jankowska2, Veit Schubert2, Katrin Kumke2, Wei Isabelle Lesur, INRA, BIOGECO, UMR 1202, Cestas, France, Céline Noirot, Ma2 and Andreas Houben2, (1)University of Birmingham - School of Plateforme bioinformatique Genotoul, UR875UR875, Castanet-Tolosan, Biosciences, Birmingham, United Kingdom, (2)Leibniz Institute of Plant France, Christophe Klopp, Plateforme bioinformatique Genotoul, UR875, Genetics and Crop Plant Research (IPK), Gatersleben, Germany Castanet-Tolosan, France, Céline Lalanne, INRA, , BIOGECO, UMR 1202, Cestas, France and Christophe Plomion, INRA,BIOGECO, UMR 1202, Bordeaux, France W590: Plant Cytogenetics

FIDGETIN-LIKE 1 Limits Non-Interfering Meiotic Crossovers, Independently of FANCM, by Regulating the Invasion Step of Homologous W594: Plant Dormancy Workshop Recombination Discovery of Dormancy-Associated Genes in Populus through Activation Tagging Chloe Girard, INRA Centre de Versailles-Grignon, Paris, France Victor Busov, Michigan Tech University, Houghton, MI, Yordan Yordanov, Michigan Technological University, Houghton, MI and Steven Strauss, Oregon W591: Plant Cytogenetics State University, Corvallis, OR Repetitive DNA in Plant Genomes Trude Schwarzacher, University of Leicester, Leicester, United Kingdom

W595: Plant Dormancy Workshop W599: Plant Genome Engineering Identities and Regulatory Mechanisms of Seed Dormancy Genes Map- The CRISPR/Cas System can be used as Nuclease for in planta Gene Based Cloned from Rice Targeting and as Paired Nickases for Directed Mutagenesis in Arabidopsis Resulting in Heritable Progeny Xingyou Gu, Jiuhuan Feng and Heng Ye, South Dakota State University, Brookings, SD Holger Puchta, Karlsruhe Institute of Technology, Karlsruhe, Germany

W596: Plant Dormancy Workshop W600: Plant Genome Engineering A Comparative Transcriptome Analysis on Growth Regulation Between Highly Efficient Genome Editing in Crops Seeds and Buds of Arabidopsis Feng Zhang1, William J Haun1, Benjamin Clasen1, Thomas Stoddard1, Eiji Nambara, Dept of Cell & Systems Biology, University of Toronto, Zachary Demorest1, Jin Li1, Song Luo1, Dan Voytas2 and Luc Mathis1, Toronto, ON, Canada (1)Cellectis plant sciences, New Brighton, MN, (2)University of Minnesota, St Paul, MN W597: Plant Genome Engineering Strategies for the Targeted Modification of Plant Genomes W601: Plant Genome Engineering A Modular Gene Targeting System for Sequential Transgene Stacking in Dan Voytas, University of Minnesota, St Paul, MN and Robert M Stupar, Plants Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN Sandeep Kumar, Dow AgroSciences, Indianapolis, IN

W598: Plant Genome Engineering W602: Plant Interactions with Pests and Pathogens Developing Genome Editing Technologies for Crop Improvement Designing Disease Resistant Plants Caixia Gao, Institute of Genetics and Developmental Biology, CAS, Beijing, Benjamin F Matthews, USDA-ARS Soybean Genomics Lab, Beltsville, MD China

184 W603: Plant Interactions with Pests and Pathogens W605: Plant Interactions with Pests and Pathogens Yr36 Confers Partial Resistance to Wheat Stripe Rust By a Novel Folic Acid Plays a Critical Role in Nonhost Resistance Mechanism Madan K Bhattacharyya, Iowa State University, Ames, IA 1 2 3 1 1 Jorge Dubcovsky , Jin-Ying Gou , Kati Wu , Xiaodong Wang , Dario Cantu , Cristobal Uauy4, Albor Dobon-Alonso5, Kentaro Inoue1, Takafumi Midorikawa1, Juan Sanchez3, Daolin Fu6, Kun Li3, Ann Blechl7, Emma W606: Plant Interactions with Pests and Pathogens Wallington8, Tzion Fahima9, Lynn Epstein3 and Madhu Meeta10, (1)University APIP10 Is a Novel E3 Ligase That Functionally Connects the Fungal of California Davis, Davis, CA, (2)Fudan University, Shanghai, China, Effector AvrPiz-t to Its NLR Receptor Piz-t in Rice Shanghai, China, (3)University of California, Davis, CA, (4)John Innes Centre, 1 1 1 2 Norwich, England, (5)John Innes Centre, Norfolk, England, (6)Shandong Chan Ho Park , Gautam Shirsekar , Maria Bellizzi , Songbiao Chen , 1 3 4 1 Agricultural University, Tai’an, China, (7)USDA-ARS, Albany, CA, Pattavipha Songkumarn , Yuese Ning , Bo Zhou and Guo-Liang Wang , (8)National Institute of Agricultural Botany, Cambridge, United Kingdom, (1)The Ohio State University, Columbus, OH, (2)Fujian Academy of (9)University of Haifa, Haifa, Israel, (10)Punjab Agricultural University, Agricultural Sciences, Fujian, China, (3)Chinese Academy of Agricultural Ludhiana, Punjab, India Sciences, Beijing, China, (4)International Rice Research Institute, Metro Manila, Philippines

W604: Plant Interactions with Pests and Pathogens W607: Plant Interactions with Pests and Pathogens Blackleg Resistance Gene Identification in Brassica napus: A Pan Genome Approach Broadly Conserved Fungal Effector BEC1019 Suppresses Host Cell Death and Enhances Virulence of Powdery Mildew in Barley (Hordeum Reece Tollenaere1, Salman Alamery2, Satomi Hayashi3, Philipp Emanuel vulgare L) Bayer3, Agnieszka Golicz4, Harsh Raman5, Boulos Chalhoub6, David Edwards7 1 2 3 4 and Jacqueline Batley8, (1)University of Queensland, St Lucia, Australia, Roger Wise , Priyanka Surana , Ehren Whigham , Shan Qi , Antony V E 2 2 5 1 6 (2)University of Queensland, St Lucia, Australia, (3)University of Queensland, Chapman , Divya Mistry , Ruo Xu , Greg Fuerst , Clara Pliego , Laurence 7 8 2 9 Brisbane, Australia, (4)Australian Centre for Plant Functional Genomics, Bindschedler , Pietro Spanu , Julie Dickerson , Roger W Innes , Dan 2 4 Brisbane, Australia, (5)Wagga Wagga Agricultural Institute, PMB, Wagga Nettleton and Adam Bogdanove , (1)USDA-ARS, Iowa State University, Wagga, NSW, Australia, (6)URGV-INRA, Evry, France, (7)University of Ames, IA, (2)Iowa State University, Ames, IA, (3)Roosevelt High School, Des Western Australia, Perth, Australia, (8)University of Western Australia, Moines, IA, (4)Cornell University, Ithaca, NY, (5)Google, Inc, Mountain View, Crawley, Australia CA, (6)Instituto Andaluz de Investigación y Formación Agraria y Pesquera, Málaga, Spain, (7)Royal Holloway University of London (RHUL), London,

United Kingdom, (8)Imperial College, London, United Kingdom, (9)Indiana University, Bloomington, IN

W608: Plant Phenotypes W613: Plant Phenotypes Precision Phenotyping in Plant Breeding An Ontology Approach to Comparative Phenomics in Plants

Tobias Wuerschum, State Plant Breeding Institute, University of Hohenheim, Lisa Harper1, Anika Oellrich2, Ramona Walls3, Ethalinda Cannon4, Steven B Stuttgart, Germany Cannon5, Laurel Cooper6, Jack Gardiner4, Georgios Gkoutos7, Mingze He4, 8 6 9 5 Robert Hoehndorf , Pankaj Jaiswal , Johnny Lloyd , Scott R Kalberer , David Meinke10, Naama Menda11, Laura Moore12, Rex Nelson5, Anuradha Pujar13, W609: Plant Phenotypes Carolyn J Lawrence4 and Eva Huala14, (1)USDA ARS, Albany, CA, HIGH-THROUGHPUT PHENOTYPING – Easing the Genomics-to- (2)Wellcome Trust Sanger Institute, Hinxton, United Kingdom, (3)The iPlant Cultivar Bottleneck Collaborative, Tucson, AZ, (4)Iowa State University, Ames, IA, (5)USDA- ARS-CICGRU, Ames, IA, (6)Department of Botany & Plant Pathology, Edwin Reidel, LemnaTec, Portland, OR Oregon State University, Corvallis, OR, (7)Computer Science Department, Aberystwyth University, Aberystwyth, United Kingdom, (8)King Abdullah University of Science & Technology, Thuwal, Saudi Arabia, (9)Michigan State W610: Plant Phenotypes University, East Lansing, MI, (10)Oklahoma State University, Stillwater, OK, Phenotypes as an Organizing Principle at SoyBase and LegumeInfo (11)Boyce Thompson Institute for Plant Research, Ithaca, NY, (12)Department Databases of Botany and Plant Pathology, Oregon State University, Corvallis, OR, (13)Cornell University, Ithaca, NY, (14)Phoenix Bioinformatics, Redwood Rex Nelson, USDA-ARS-CICGRU, Ames, IA City, CA

W611: Plant Phenotypes W614: Plant Reproductive Genomics QTL Data Standards at PeanutBase and LegumeInfo Welcome Ethalinda Cannon, Iowa State University, Ames, IA Jim Leebens-Mack, University of Georgia, Athens, GA

W612: Plant Phenotypes W615: Plant Reproductive Genomics Curating Maize Diversity: Plant Trait Ontology Annotations for GWAS Meristem Maturation and Flower Production in the Solanaceae and QTL Data Soon Ju Park1, Ke Jiang1, Zachary Lemmon1, Sarika Gupta2, Joyce Van Eck2, Laurel Cooper, Department of Botany & Plant Pathology, Oregon State Michael Schatz1 and Zach Lippman1, (1)Cold Spring Harbor Laboratory, Cold University, Corvallis, OR Spring Harbor, NY, (2)The Boyce Thompson Institute, Ithaca, NY

185 W616: Plant Reproductive Genomics W621: Plant Transgene Genetics Sequencing Output at Work - Resolving Carpel Gene Origins Comparison of Genomic Structural Variation Associated with Cultivars, Mutagenized, and Transgenic Soybean Plants Kai C Pfannebecker, Matthias Lange and Annette Becker, Justus-Liebig- University, Gießen, Germany Robert M Stupar1, Justin E Anderson2, Jean-Michel Michno2 and Adrian O 3 Stec , (1)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, (2)University of Minnesota, St Paul, MN, W617: Plant Reproductive Genomics (3)University of Minnesota, Saint Paul, MN Developmental Genetics of Pollinator-Associated Floral Traits Yaowu Yuan, The University of Connecticut, Storrs, CT W622: Plant Transgene Genetics Transient and Stable Heterologous Transgene Expression to Investigate the Mechanism of Sex Determination in Persimmon W618: Plant Reproductive Genomics Evolution of Phase-Biased Gene Expression in Land Plants Isabelle M Henry1, Takashi Akagi2, Ryutaro Tao2 and Luca Comai1, (1)Plant Biology and Genome Center, UC Davis, Davis, CA, (2)Kyoto University, 1 2 1 2 Péter Szövényi , Joshua P Der , Mariana Ricca , Claude dePamphilis , Kentaro Kyoto, Japan K Shimizu3, Andreas Wagner1 and Dietmar Quandt4, (1)University of Zurich,

Zurich, Switzerland, (2)Penn State University, University Park, PA, (3)IEU, University Zurich, Zurich, Switzerland, (4)Nees Institute for Biodiversity of W623: Plant Transgene Genetics Plants, University Bonn, Bonn, Germany Towards the Production of a Margarine Type Vegetable Oil in Soybean

Tom Clemente, Ed Cahoon, Hanh Nguyen and Hyunwoo Park, University of W619: Plant Reproductive Genomics Nebraska, Lincoln, NE Genetic Conflict and the Evolution of Sporophyte-Specific Gene Expression in Ceratodon purpureus W624: Plant Transgene Genetics Stuart McDaniel, University of Florida, Gainesville, FL In-Depth Characterization of Transgenic Events Carrying Targeted Insertions at the Maize ZmIPK1 Locus W620: Plant Reproductive Genomics Tristan Coram, Dow AgroSciences, Indianapolis, IN The Origin and Evolution of Dioecy and Sex Chromosomes in Asparagus Alex Harkess, Department of Plant Biology, University of Georgia, Athens GA, GA and Jim Leebens-Mack, University of Georgia, Athens, GA

W625: Plant Transgene Genetics W629: Polyploidy Transformation Efficiency, Transgene Integration Complexity and The Role That Transposable Elements May Play in Differential Expression Expression Stability Following Biolistic or Agrobacterium-mediated Levels of Maize Paralogs Transformation of Sugarcane Damon Lisch, Purdue University, West Lafayette, IN, Margaret R Woodhouse, Hao Wu1, Aloisio Vilarinho1, Faisal Saeed Awan1, Qianchun Zeng1, Baskaran University of California, Berkeley, Berkeley, CA, CA, Jie Xu, Sichuan Kannan1, Tenisha Phipps1, Jamie McCuiston2, Wenling Wang2, Kerry Caffall2 Agricultural University & UC Berkeley, Berkeley, CA and Michael R Freeling, and Fredy Altpeter1, (1)University of Florida - IFAS, Gainesville, FL, University of California, Berkeley, CA (2)Syngenta Biotechnology Inc, Durham, NC W630: Polyploidy W626: Plant Transgene Genetics Subfunctionalization and Nonfunctionalization, Revisited MicroRNA Regulation of Auxin-Cytokinin Balance during Soybean Nodule Development Michael R Freeling, University of California, Berkeley, CA

Senthil Subramanian, Narasimha R Nizampatnam, Spencer Schreier and Suresh Damodaran, South Dakota State University, Brookings, SD W631: Polyploidy Evolution of Duplicated Pathways in Networks in Allopolyploid Cotton W627: Polyploidy Corrinne E Grover, Joseph P Gallagher and Jonathan F Wendel, Iowa State Interplay of Polyploid- and Tandem-Derived Gene Duplicates in Chemical University, Ames, IA Defense and Pathogen Recognition M Eric Schranz, Wageningen University and Research, Wageningen, W632: Polyploidy Netherlands and Johannes A Hofberger, Wageningen University, The Role of Gene and Genome Duplications in Network Evolution WAGENINGEN, Netherlands Patrick Edger1, Michael R Freeling1, Diane Burgess1, Gavin Conant2 and J 3 Chris Pires , (1)University of California, Berkeley, CA, (2)Division of Animal W628: Polyploidy Sciences, University of Missouri, Columbia, MO, (3)University of Missouri, Epigenetic Regulation of Duplicated Genes Involving Spreading of DNA Columbia, MO Methylation in Legumes Kyung Do Kim, Moaine El Baidouri and Scott A Jackson, University of Georgia, Athens, GA

186 W633: Population and Conservation Genomics W636: Population and Conservation Genomics Sexual Selection and Rates of Molecular Evolution in Flowering Plants Population Bottlenecks Led to the Accumulation of Deleterious Variants in Domestic and Wild Canids Loren H Rieseberg1, Kate Ostevik1, Xing Fan2 and Daniel Ortiz-Barrientos3, (1)University of British Columbia, Vancouver, BC, Canada, (2)Sichuan Clare Marsden, University of California, Los Angeles, Los Angeles, CA, Agricultural University, Chengdu, China, (3)University of Queensland, Robert D Schnabel, Division of Animal Sciences, University of Missouri, Brisbane, Australia Columbia, MO, Gary S Johnson, Department of Vet Pathobiology, University of Missouri, Columbia, MO, Robert Wayne, University of California - Los Angeles, Los Angeles, CA and Kirk E Lohmueller, University of California W634: Population and Conservation Genomics Los Angeles, Los Angeles, CA Genomics of Population Divergence and Species Cohesion in an Ecologically Important Species Complex W637: Population and Conservation Genomics Kai N Stölting1, Margot Paris1, Cecile Meier1, Berthold Heinze2, Stefano 3 4 5 Genome-Wide Analysis of Long-Term Evolutionary Domestication in Castiglione , Denes Bartha , David Macaya Sanz , Santiago Gonzalez- Drosophila melanogaster Martinez5 and Christian Lexer1, (1)University of Fribourg, Fribourg, Switzerland, (2)Austrian Federal Research Centre for Forests (BFW), Vienna, Mark A Phillips1, Anthony D Long1, Lee F Greer1, Molly K Burke2, Laurence Austria, (3)University of Salerno, Salerno, Italy, (4)West-Hungarian D Mueller1 and Michael R Rose1, (1)University of Calirfornia, Irvine, Irvine, University, Sopron, Hungary, (5)Center of Forest Research, CIFOR-INIA, CA, (2)University of Calirfornia, San Diego, La Jolla, CA Madrid, Spain W638: Population and Conservation Genomics W635: Population and Conservation Genomics Environmental Adaptation in Chinook Salmon (Oncorhynchus The Koala Genome Consortium - the Utilization of de novo Genome and tshawytscha) throughout their Native Geographic Range Transcriptome Sequencing for Applied Conservation Genomics of an Iconic Australian Marsupial Benjamin Hecht, Andrew P Matala, Jon Hess and Shawn Narum, Columbia River Inter-Tribal Fish Commission, Hagerman, ID 1 1 2 1 Rebecca N Johnson , Matthew Hobbs , Zhiliang Chen , Don J Colgan , Mark DB Eldridge1, Andrew G King1, Adam Polkinghorne3, Marc R Wilkins2 and Peter Timms3, (1)Australian Museum Research Institute, Sydney, Australia, (2)Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences,, Sydney, Australia, (3)Faculty of Science, Health, Education and Engineering,, Queensland, Australia

W639: Population and Conservation Genomics W641: Population and Conservation Genomics Genetic Differentiation, Transcriptome Variation, and Local Adaptation Higher Non-Synonymous Substitution Rates in Disease Resistance, Wood of Dominant Prairie Grass Androspogon gerardii along the Climate Synthesis and Stress-Responsive Genes in Clonal Varieties of Woody Gradient of the US Midwest: Implications for Climate Change and Biomass Species Restoration Berthold Heinze, Renate Slunsky and Daniela Jahn, Austrian Federal Research Loretta C Johnson1, Miranda M Gray2, Paul St Amand3, Matthew Galliart4, Centre for Forests (BFW), Vienna, Austria 5 4 6 4 7 Susan Brown , Jesse Poland , Karen Garrett , Eduard Akhunov , Nora Bello , Theodore Morgan8, Sara G Baer9 and Brian Maricle10, (1)Kansas state university, Manhattan, KS, (2)Cornell University, Ithaca, NY, (3)USDA-ARS- W642: Poultry 1 Small Grain Genotyping Lab, Manhattan, KS, (4)Kansas State University, Opening Remarks and Introductions Manhattan, KS, (5)Kansas State University, KSU Bioinformatics Center, Manhattan, KS, (6)Kansas State University, Department of Plant Pathology, Douglas D Rhoads, University of Arkansas, Fayetteville, AR Manhattan, KS, (7)Kansas State University, Department of Statistics, Manhattan, KS, (8)Kansas State University, Department of Biology, W643: Poultry 1 Manhattan, KS, (9)Southern Illinois University, Carbondale, IL, (10)Biology Department,, Hays, KS Vaccine Induced Differential Expressions of Mirnas at Cytolytic Stage in Chickens Resistant or Susceptible to Marek's Disease

W640: Population and Conservation Genomics Huanmin Zhang1, Qingmei Xie2, Shuang Chang3, Yanghua He4, Cathy Ernst5 and Jiuzhou Song4, (1)USDA ARS Avian Disease & Oncology Laboratory, Exploring Origins, Invasion History and Genetic Diversity of Imperata East Lansing, MI, (2)South China Agricultural University, Guangzhou, China, cylindrica (L) P Beauv (Cogongrass) using Genotyping by Sequencing (3)Shandong Agricultural University, Tai'an, China, (4)University of Maryland, Millie Burrell1, Alan E Pepper1, George Hodnett1, John Goolsby2, William A College Park, MD, (5)Department of Animal Science, Michigan State Overholt3, Alexis Racelis4, Rodrigo Diaz3 and Patricia E Klein5, (1)Texas University, East Lansing, MI A&M University, College Station, TX, (2)ARS-USDA, Edinburg, TX, (3)University of Florida, Fort Pierce, FL, (4)University of Texas Pan American, W644: Poultry 1 Edinburg, TX, (5)Department of Horticulture,Texas A&M University, College Station, TX Association of Specific Microbes with Marek’s Disease Progression Sudeep Perumbakkam, Michigan State University, East Lansing, MI and Hans Cheng, USDA, ARS, ADOL, East Lansing, MI

187 W645: Poultry 1 W650: Poultry 1 MDV Vaccine Serotype and Chicken Host Genome Interactions Influence of Selection on Genomic Accuracies of Males and Females Using Male, Female or Joint Genotypes Mary Delany, University of California, Davis, CA Ignacy Misztal, University of Georgia, Athens, GA W646: Poultry 1 Towards Understanding Gene Expression in Red Jungle Fowl W651: Poultry 1

1 1 1 2 Association of the Transsulfuration Pathway in Feather Follicle and Fionna McCarthy , Amanda M Cooksey , Ken Pendarvis , Cathy Gresham Subcutaneous Tissue Development in Broiler Chickens and Shane Burgess1, (1)University of Arizona, Tucson, AZ, (2)Mississippi State University, Starkville, MS Jose H Vilar da Silva, Fernando Gonzalez-Ceron, Elizabeth W Howerth and Samuel E Aggrey, University of Georgia, Athens, GA W647: Poultry 1 Genomics of Response to Heat Stress in Chickens W652: Poultry 1 RNA-Seq Analysis of Wooden Breast Disease: Characterizing a Novel Susan J Lamont, Iowa State University, Ames, IA Myopathy in Commercial Chickens through Differential Gene Expression

Marie Mutryn1, Erin Brannick1, Weixuan Fu1, William Lee2 and Behnam W648: Poultry 1 Abasht1, (1)Department of Animal Science, University of Delaware, Newark, AM Break DE, (2)Maple Leaf Farms, Leesburg, IN

Douglas D Rhoads, University of Arkansas, Fayetteville, AR W653: Poultry 1 Adventures in Improving the Chicken Reference Genome and W649: Poultry 1 Transcriptome Genetic Architecture of Heat Stress and Disease Resistance to Newcastle Disease Virus in Chickens C Titus Brown, Michigan State University, East Lansing, MI

Huaijun Zhou, University of California, Davis, CA W654: Poultry 1

Lunch Break

Douglas D Rhoads, University of Arkansas, Fayetteville, AR

W655: Poultry 1 W660: Poultry 1 Transcriptome Profiling of the Chicken Yolk Sac during Late TBD Embryogenesis Carl J Schmidt, University of Delaware, Newark, DE Eric A Wong, Virginia Tech, Blacksburg, VA, Liran Yadgary, University of North Carolina-Chapel Hill, Chapel Hill, NC and Zehava Uni, The Hebrew University, Rehovot, Israel W661: Poultry 1 Viral/Host Gene Expression Profiles in Lymphoid and Feather Follicle Epithelial (FFE) Cells Infected with Marek’s Disease Virus (MDV)” W656: Poultry 1 Differential Transcriptome Response to Aflatoxin in the Turkey Deepali Vasoya, Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom Kent M Reed, University of Minnesota, St Paul, MN W662: Poultry 1 W657: Poultry 1 Specialized Antigen Presentation By Yf MHC Class I-like Molecules in Sex Chromosomes Demonstrate Complex Evolutionary Trajectories Poultry Health Across Bird Taxa Marcia M Miller, Beckman Research Institute, City of Hope, Duarte, CA Doris Bachtrog, University of California Berkeley, Berkeley, CA W663: Poultry 1 W658: Poultry 1 Update on NRSP8 Bioinformatics Activities PM Break James M Reecy, Department of Animal Science, Iowa State University, Ames, Douglas D Rhoads, University of Arkansas, Fayetteville, AR IA

W659: Poultry 1 W664: Poultry 1 Identification of Quantitative Trait Loci Associated with Low Sperm Grad Student 3 Minute Talks Mobility in the Chicken Douglas D Rhoads, University of Arkansas, Fayetteville, AR David P Froman, Oregon State University, Corvallis, OR

188 W665: Poultry 2 W670: Poultry 2 Non-Coding RNA Identification of Marek’s Disease in CD4+ T Cells AM Break Jiuzhou Song, University of Maryland, College Park, MD Douglas D Rhoads, University of Arkansas, Fayetteville, AR

W666: Poultry 2 W671: Poultry 2 Neal Jorgenson Genomics Award: RNA-Seq Based Genome-Wide Analysis Bioinformatic Interpretation through Upstream and Functional Analysis of Genomic Imprinting in Chicken Lungs of Global Gene Expression Associated with Feed Efficiency in Broiler Tae Hyun Kim, University of California, Davis, CA Byung-Whi Kong, Sami Dridi and Walter Bottje, University of Arkansas, Fayetteville, AR W667: Poultry 2 Update on the Chicken Genome W672: Poultry 2 Genome Analysis of a Bacterium that Causes Lameness Wesley Warren, The Genome Institute, St Louis, MO 1 2 3 3 M Brian Couger , Adnan Al-Rubaye , Sohita Ojha , Robert F Wideman and Douglas D Rhoads3, (1)Oklahoma State University, Stillwater, OK, W668: Poultry 2 (2)University of Arkansas/Fayetteville, Fayetteville, AR, (3)University of Genome-Wide Pattern and Magnitude of Genetic Diversity in a Wide Arkansas, Fayetteville, AR Range of Diverse Chicken Breeds Steffen Weigend, Institute of Farm Animal Genetics, Friedrich Loeffler W673: Poultry 2 Institut, Neustadt, Germany NC1170 Business Meeting

Douglas D Rhoads, University of Arkansas, Fayetteville, AR W669: Poultry 2

Use of Allele Specific Expression to Fine Map QTL and Enhance Genomic Selection William Muir, Purdue University, West Lafayette, IN and Hans Cheng, USDA, ARS, ADOL, East Lansing, MI

W674: Proteomics W678: Proteomics Protein Microarray Platform for Pathogen Effectors Studies and Beyond GNPS - a Preview of the Future of Community Wide Collaboration and the Power of Social Networking in Mass Spectrometry Shisong Ma, Dept of Plant Biology and The Genome Center, University of California Davis, Davis, CA, John McDowell, PPWS Department, Virginia Mingxun Wang1, Jeremy Carver1, Vanessa Phelan1, Laura Sanchez2, Tal Tech, Blacksburg, VA, Brett Tyler, Oregon State University, Corvallis, OR and Luzzatto1, Neha Garg1, Pieter Dorrestein1 and Nuno F Bandeira3, (1)University SP Dinesh-Kumar, Department of Plant Biology and The Genome Center, of California - San Diego, San Diego, CA, (2)University of California - San University of California Davis,, Davis, CA Diego, La Jolla, CA, (3)University of California, San Diego, La Jolla, CA

W675: Proteomics W679: Proteomics Proteomic Analysis of Abiotic Stress in Grapevines Drought Stress Research in Crops Using -Omics Approaches: mRNA Seq and Proteomics in the Spot Light Paul A Haynes1, Ryan M Ghan2, Daniel W Hopper3, Grant R Cramer2, Anne Fennell4, Iniga S George5 and David CL Handler5, (1)Macquarie University, Ewaut Kissel1, Jassmine Zorilla1, Mathieu Rouard2, Rony Swennen1 and North Ryde, NSW, Australia, (2)University of Nevada, Reno, Reno, NV, Sebastien C Carpentier1, (1)KULeuven, Leuven, Belgium, (2)Bioversity (3)University of Nevada, Reno, NV, (4)South Dakota State University, International, Montpellier, France Brookings, SD, (5)Macquarie University, North Ryde, Australia W680: QTL Cloning W676: Proteomics The Role of Gene Duplication and Allelic Diversity in Adaptation for High Phosphor-Regulation Induced Pre-mRNA Splicing via a Splicing Soil Boron Activator, SR45, during Flower Development Peter Langridge, Australian Centre for Plant Functional Genomics, Urrbrae, Xiao-Ning Zhang, St Bonaventure University, St Bonaventure, NY Australia

W677: Proteomics Using Proteomics in Transgenic Wheat to Assess the Effects of an RNA Interference Construct that Targets a Family of Seed Storage Proteins Ann E Blechl1, William Vensel1, Brian S Beecher2, Charlene Tanaka1 and Susan B Altenbach1, (1)USDA-ARS, Albany, CA, (2)USDA-GIPSA, Kansas City, MO

189 W681: QTL Cloning W684: QTL Cloning Cloning a Major QTL for Dormancy in Wheat Defining QTL Boundaries from GWAS Results

Jose Barrero1, Colin Cavanagh2, Penghao Wang2, Stuart Stephen2, Arunas Fabien Cormier, BIOGEMMA, Chappes, France 3 3 3 4 4 Verbyla , Klara Verbyla , Emma Huang , Josquin Tibbits , Matthew Hayden and Frank Gubler2, (1)CSIRO, Agriculture Flagship, Canberra, Australia, (2)CSIRO, Agriculture Flagship, Canberra, Australia, (3)CSIRO, Digital W685: QTL Cloning Productivity & Services Flagship, Canberra, Australia, (4)Department of Molecular Mechanisms of Quantitative Genetics Revealed By Cloning and Environment and Primary Industries, Bundoora, Australia Systems Analysis of 474 Genes Controlling Fiber Length in Cotton and 1,501 Genes Controlling Grain Yield in Maize W682: QTL Cloning Meiping Zhang1, Yun-Hua Liu1, Yang Zhang1, Wenwei Xu1, Seth Murray1, Wayne Smith1, Steve Hague1, Sing-Hoi Sze1, James Frelichowski2 and Hong- Identifying the Function of Sorghum's Drought Tolerance Stay-Green 1 QTL Bin Zhang , (1)Texas A&M University, College Station, TX, (2)USDA-ARS, College Station, TX 1 2 3 Andrew K Borrell , John Mullet , Barbara George-Jaeggli , Erik van Oosterom4, Emma Mace3, Graeme L Hammer4, Patricia E Klein5, Brock D Weers2, Yang Shanshan2 and David R Jordan1, (1)University of Queensland, W686: Recombination - mechanisms Warwick, Australia, (2)Texas A&M University, College Station, TX, The Function of the Plant Double Strand Break Initiating Proteins SPO11- (3)Queensland Government, Warwick, Australia, (4)University of Queensland, 1 and SPO11-2 Is Sequence and to a Certain Extent Species Specific Brisbane, Australia, (5)Department of Horticulture,Texas A&M University, College Station, TX Thorben Sprink and Frank Hartung, Julius Kühn Institut, Quedlinburg, Germany

W683: QTL Cloning W687: Recombination - mechanisms qPC1 Functions as an Important Regulator of Protein Content and Starch in Rice Grain Histone H11, Meiotic Chromosome Axis and Recombination Yuqing He, National Key Laboratory of Crop Genetic Improvement and Eugenio Sanchez-Moran, School of Biosciences University of Birmingham, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural Birmingham, United Kingdom University, Wuhan, China

W688: Recombination - mechanisms W692: Resources and Programs for Undergraduate Education in Genomics Functional Interaction of DMC1 and RAD51 during Meiotic GameteMaker: A Genetic Mapping Simulation Program That Helps Recombination in Arabidopsis Students to Connect Mutant Phenotypes with Underlying, DNA Sequence- Based Genotypes Zhihao Cheng, Hang Su, Jiyue Huang, Yingxiang Wang and Hong Ma, State Key Lab of Genet Eng, Sch of Life Sci, Fudan Univ, Shanghai, China Scott T Woody, U Wisconsin-Madison, Madison, WI

W689: Recombination - mechanisms W693: Resources and Programs for Undergraduate Education in Genomics Combined Fluorescent and Electron Microscopic Imaging Unveils the Using Students' Own DNA Sequences to Explore Human Evolution Specific Properties of Two Classes of Meiotic Crossovers Dave Micklos, DNA Learning Center, Cold Spring Harbor, NY 1 1 1 1 Lorinda Anderson , Leslie Lohmiller , Xiaomin Tang , Boyd Hammond , Lauren Bombardier1, Lindsay Shearer1, Sayantani Basu-Roy2, Olivier C Martin2 and Matthieu Falque2, (1)Colorado State University, Fort Collins, W694: Resources and Programs for Undergraduate Education in Genomics CO, (2)INRA/CNRS/Univ Paris-Sud/AgroParisTech, Gif-sur-Yvette, France Training Students in Analyzing "Big Data" : Response of Maize Seedlings to Cold W690: Recombination - mechanisms Irina Makarevitch, Hamline University, Saint Paul, MN Genetic and Epigenetic Control of Arabidopsis Meiotic Recombination Hotspots W695: Resources and Programs for Undergraduate Education in Genomics Ian R Henderson, University of Cambridge, Cambridge, England Introducing Undergraduate Students to Gene and Genome Structure through Gene Annotation W691: Recombination - mechanisms Brent Buckner, Truman State University, Kirksville, MO Exploitation of the First Sequenced Wheat Chromosome (3B) to Study the Variation of the Recombination Pattern W696: Resources and Programs for Undergraduate Education in Genomics Benoît Darrier1, Frederic Choulet1, Natasha Glover1, Catherine Feuillet1 and Neil A Campbell Science Learning Laboratory and the Dynamic Genome Pierre Sourdille2, (1)INRA GDEC, Clermont-Ferrand, France, (2)INRA UMR Course: Models for Authentic Research Experiences in the Teaching Genetics, Diversity & Ecophysiology of Cereals, Clermont-Ferrand, France Laboratory

James Burnette, University of California, Riverside, Riverside, CA

190 W697: Resources and Programs for Undergraduate Education in Genomics W701: Rice Functional Genomics Undergraduate Genomics Research through GCAT-SEEK: The Genome A Closed Panicle Regulated by OsLG1 was a Selected Trait during Rice Consortium for Active Teaching Using Next-Generation Sequencing Domestication Vincent Buonaccorsi, Juniata College, Huntingdon, PA Takashige Ishii, Kobe University, Kobe, Japan

W698: Rice Functional Genomics W702: Rice Functional Genomics Evolution of the Collective Oryza Genome: Development and Analysis of a Direct Regulation of a Mitogen-Activated Protein Kinase By a Plasma Genus-Wide Genome Biology Platform to Help Solve the 9-Billion People Membrane-Associated Calcium-Dependent Protein Kinase in Rice Question Yinong Yang, Pennsylvania State University, University Park, PA Rod A Wing, Arizona Genomics Institute, University of Arizona, Tucson, AZ W703: Rice Functional Genomics W699: Rice Functional Genomics Insights into the Role of Differential Gene Expression on Species Origin: A SNP-Seek: 3000 Rice Genomes for Allele Discovery Case Study on Wild Rice Kenneth L McNally, The International Rice Research Institute, Metro Manila, Jie Guo, Lei Huang, Rong Liu, Xiao-ming Zheng, Ping-Li Liu, Yu-su Du, Zhe Philippines Cai, Fu-min Zhang and Song Ge, Institute of Botany, CAS, Beijing, China

W700: Rice Functional Genomics W704: Root Genomics The Roles of Strigoalctones in the Control of Rice Tillering Transcriptional Networks Reveal Different Mechanisms to Achieve Tissue- Specific Expression Patterns in the Arabidopsis Root Dajun Sang1, Liang Jiang1, Dongqin Chen1, Xue Liu1, Ning Zhang1, Linzhou Huang1, Qian Qian2, Jiayang Li1 and Yonghong Wang1, (1)Institute of Erin Sparks, Duke University, Durham, NC Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China, (2)China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, China

W705: Root Genomics W709: Root Genomics Describing and Mapping ROOT Mutants in Barley Phenotyping Wheat Root Architecture in 2D and 3D

Riccardo Bovina1, Sara G Milner1, Carlos Busanello2, Valentina Talame1, Jonathan Atkinson1, Luzie U Wingen2, Marcus Griffiths1, Michael P Pound1, Roberto Tuberosa1, Nils Stein3 and Silvio Salvi1, (1)DipSA - University of Shaunagh Keating1, Reshmi Gaju1, Larry M York1, Jacques Le Gouis3, Simon Bologna, Bologna, Italy, (2)Department of Plant Science, University Federal of Griffiths2, John Foulkes1, Darren M Wells1, Malcolm J Bennett1, Julie King1 Pelotas, Capão do Leão-RS, Brazil, (3)Leibniz Institute of Plant Genetics and and Ian P King1, (1)The University of Nottingham, Leicestershire, United Crop Plant Research (IPK), Stadt Seeland, Germany Kingdom, (2)John Innes Centre, Norwich, United Kingdom, (3)INRA GDEC, clermont ferrand, France W706: Root Genomics Genetic Architecture of Cyst Nematode Resistance Revealed By Genome- W710: Sequencing Complex Genomes Wide Association Study in Soybean The International Coffea Genome13 Project: A Way to Understand the

1 2 2 2 Evolutionary History of Coffea Genomes and Unlock the Potential Use of Tri D Vuong , Humira Sonah , Clinton Meinhardt , Rupesh Deshmukh , Suhas Wild Species in Breeding? Kadam2, Randy Nelson3, Grover Shannon4 and Henry T Nguyen2, (1)University of Missouri & National Center for Soybean Biotechnology, Perla Hamon, IRD UMR DIADE, Montpellier cedex 5, France Columbia, MO, (2)University of Missouri, Columbia, MO, (3)USDA ARS, Urbana, IL, (4)University of Missouri, Portageville, MO W711: Sequencing Complex Genomes

Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes W707: Root Genomics Revealed By Dense Targeted Capture Linkage Maps

Transcriptomic Analyses of Roots of Cereals Associated to the Nitrogen- 1 2 2 Fixing Bacteria Azospirillum brasilense and Herbaspirillum seropedicae Jacob Tennessen , Rajanikanth Govindarajulu , Tia-Lynn Ashman and Aaron Liston1, (1)Oregon State University, Corvallis, OR, (2)University of Pittsburgh, Emanuel Souza, UFPR, Curitiba, Brazil Pittsburgh, PA

W708: Root Genomics W712: Sequencing Complex Genomes Cytokinin-Dependent Secondary Growth Determines Root Biomass in De Novo Assembly of Plant Genomes: Hybrid Approaches for Radish (Raphanus sativus L) Heterogeneous NGS Data

Geupil Jang1, Jung-Hun Lee1, Suhyoung Park2 and Ji-Young Lee1, (1)School Thiru Ramaraj, National Center for Genome Resources, Santa Fe, NM of Biological Sciences, Seoul National University, Seoul, South Korea, (2)National Institute of Horticultural & Herbal Science, Suwon, South Korea

191 W713: Sequencing Complex Genomes W715: Sequencing Complex Genomes In Favor of a Whole-Genome Shotgun: Assembling and Anchoring the Elucidating Intra-Species Genome Complexity By Using a Novel De Novo Hexaploid Bread Wheat Genome Assembly Tool to Assemble Two Maize Inbred Lines Jarrod Chapman1, Martin Mascher2, Aydın Buluç3, Kerrie W Barry1, Nissim Yonash, NRGENE, Ness-Ziona, Israel and Guy Kol, NRGENE Ltd, Evangelos Georganas4, Adam Session5, Veronika Strnadova6, Jerry Jenkins7, Ness-Ziona, Israel 8 4 9 4 Sunish K Sehgal , Leonid Oliker , Jeremy Schmutz , Katherine Yelick , International Wheat Genome Sequencing Consortium Iwgsc10, Uwe Scholz11, Robbie Waugh12, Jesse Poland8, Gary J Muehlbauer13, Nils Stein14 and Daniel W716: Sex Chromosomes and sex determination S Rokhsar1, (1)DOE Joint Genome Institute, Walnut Creek, CA, (2)Leibniz Genomic and Evolutionary Features of the Brown Alga Ectocarpus UV Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Sex Chromosomes Germany, (3)Department of Energy Joint Genome Institute, Walnut Creek, CA, (4)Lawrence Berkeley National Laboratory, Berkeley, CA, (5)University of Susana M Coelho, CNRS-UPMC, Roscoff cedex, France California, Berkeley, CA, (6)Department of Computer Science, University of California, Santa Barbara, CA, (7)DOE Joint Genome Institute, Huntsville, AL, W717: Sex Chromosomes and sex determination (8)Kansas State University, Manhattan, KS, (9)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (10)IWGSC, Bethesda, MD, (11)Institute of Ogi, a Y-Encoded Small-RNA, Acts for Sex Determination in Diospyros Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, (12)The Plant Species

James Hutton Institute, Dundee, United Kingdom, (13)Department of Plant 1 2 1 2 Biology, University of Minnesota, St Paul, MN, (14)Leibniz Institute of Plant Takashi Akagi , Isabelle Henry , Ryutaro Tao and Luca Comai , (1)Graduate Genetics and Crop Plant Research (IPK), Stadt Seeland, Germany School of Agriculture, Kyoto University, Kyoto, Japan, (2)Plant Biology and Genome Center, UC Davis, Davis, CA

W714: Sequencing Complex Genomes W718: Sex Chromosomes and sex determination Toward a Reference Sequence of the Gene-Rich Part of the Highly Polyploid Sugarcane Genome Understanding Floral Development and Sex Expression in Dioecious Coccinia grandis 1 2 3 3 Olivier Garsmeur , Bernard Potier , Karen S Aitken , Paul J Berkman , Gaëtan 1 1 2 1 1 1 1 4 Anjan K Banerjee , Amita G Ghadge , Kanika Karmakar , Ravi S Devani Droc , Carine Charron , Guillaume Martin , Bandie Harrison , Edwin van der 2 Vossen5, Robert Henry6 and Angélique D'Hont1, (1)CIRAD, UMR AGAP, and Sangram Sinha , (1)Indian Institute of Science Education and Research Montpellier, France, (2)South African Sugarcane Research Institute, Mount Pune (IISER Pune), Pune, India, (2)Tripura University, Suryamaninagar, India Edgecombe, South Africa, (3)CSIRO Plant Industry, St Lucia, Australia, (4)Amplicon Express, Washington, WA, (5)KeyGene, Wageningen, Netherlands, (6)University of Queensland QAAFI, Brisbane, Australia

W719: Sex Chromosomes and sex determination W723: SGN Workshop: Solanaceae Genomes and Breeder Tools Population Genetics of X and Y Chromosomes in the Dioecious Plant Breeder Tools Rumex hastatulus Lukas Mueller, Boyce Thompson Institute for Plant Research, Ithaca, NY Josh Hough, University of Toronto, Toronto, ON, Canada W724: SGN Workshop: Solanaceae Genomes and Breeder Tools W720: Sex Chromosomes and sex determination solGS: A Web-Based Tool for Genomic Selection Contrasting Mechanisms of Sex Determination in the Salicaceae Isaak Y Tecle, Naama Menda and Lukas Mueller, Boyce Thompson Institute Stephen DiFazio1, Ran Zhou1, Luke Evans1, Eli Rodgers-Melnick2, Fred E for Plant Research, Ithaca, NY 3 3 3 4 Gouker , Craig H Carlson , Lawrence Smart , Haibao Tang , Vivek Krishnakumar4, Christopher D Town4 and Gerald A Tuskan5, (1)West Virginia University, Morgantown, WV, (2)Cornell University, Ithaca, NY, (3)Cornell W725: SGN Workshop: Solanaceae Genomes and Breeder Tools University, Geneva, NY, (4)J Craig Venter Institute, Rockville, MD, (5)Oak Accessing SGN Genomes through Tools Ridge National Laboratory, Oak Ridge, TN Susan R Strickler, Boyce Thompson Institute for Plant Research, Ithaca, NY

W721: Sex Chromosomes and sex determination W726: SGN Workshop: Solanaceae Genomes and Breeder Tools The XY Sex Chromosome in Date Palm (Phoenix dactylifera): From Discovery and Mapping to Sequencing Tomato Genome Assembly: SL250 and Beyond Maria Fernanda Torres1, Lisa Sara Mathew1, Candice Purchase1, Yasmin A Surya Saha, Boyce Thompson Institute, Cornell University, Ithaca, NY 1 2 Mohamoud and Joel A Malek , (1)WCMC-Qatar, Doha, Qatar, (2)Weill Cornell Medical College in Qatar, Qatar, Qatar W727: Small RNA

Genome-Wide Analysis of microRNAs Associated with Flower W722: SGN Workshop: Solanaceae Genomes and Breeder Tools Development in Rice Introduction Dong-Hoon Jeong, Hallym University, Chuncheon, South Korea Lukas Mueller, Boyce Thompson Institute for Plant Research, Ithaca, NY

192 W728: Small RNA W733: Small RNA Distinct Recruitment Mechanisms for Aub and Ago3 to Nuage Lead to Virus-Activated siRNAs (vasiRNAs) - A Novel Class of Arabidopsis Functional Compartmentalization of the pIRNA Pathway in Drosophila Endogenous siRNAs Induced by Virus Infection Alexandre Webster and Alexei Aravin, California Institute of Technology, Shou-Wei Ding, University of California, Riverside, Riverside, CA Pasadena, CA W734: Solanaceae W729: Small RNA Identification of Sterol Side Chain Reductase 2 (SSR2), a Key Enzyme in Inactivating microRNAs By Short Tandem Target Mimics and Silencing the Biosynthesis of Cholesterol As the Common Precursor of Toxic Coding Genes By Artificial microRNAs and Their Applications Steroidal Glycoalkaloids in Potato Guiliang Tang and Sachin Teotia, Michigan Technological University, Kazuki Saito1, Satoru Sawai1, Kiyoshi Ohyama2, Shuhei Yasumoto3, Hikaru Houghton, MI Seki3, Tetsushi Sakuma4, Takashi Yamamoto4, Yumiko Takebayashi1, Mikiko 1 1 5 3 Kojima , Hitoshi Sakakibara , Toshio Aoki , Toshiya Muranaka and Naoyuki Umemoto6, (1)RIKEN Center for Sustainable Resource Science, Yokohama, W730: Small RNA Japan, (2)Tokyo Institute of Technology, Tokyo, Japan, (3)Osaka University, MicroRNA Control of Immunity and Cancer Suita, Japan, (4)Hiroshima University, Hiroshima, Japan, (5)Nihon University, Kanagawa, Japan, (6)Kirin Co, Ltd, Yokohama, Japan Changchun Xiao, The Scripps Research Institution, La Jolla, CA

W735: Solanaceae W731: Small RNA Broadening the Genomic Scope for the Solanaceae: New Genome Targeting microRNAs for Destruction in Crop Plants By Short Tandem Approaches Target Mimic (STTM) Bjorn Usadel, Forschungzentrum Juelich & RWTH Aachen, Aachen, Germany Sachin Teotia, Michigan Technological University, Houghton, MI

W736: Solanaceae W732: Small RNA Potato StCDF1: A Master Regulator for Potato Tuber Development Small RNA-Based Antiviral Defense in the Phytopathogenic Fungus Colletotrichum higginsianum Christian Bachem, José Abelenda, Sara Bergonzi and Richard Visser, Plant Breeding Wageningen University & Research centre, Wageningen, Kerri Gilbert, Sonia Campo Sánchez and James Carrington, Donald Danforth Netherlands, Wageningen, Netherlands Plant Science Center, St Louis, MO

W737: Solanaceae W742: Somatic Genome A Collaborative Platform for Sharing and Analyzing Phenotypic Data Strategies for Mutation Discovery and Characterization for Plant Functional Genomics Yaniv Semel, Phenome Networks, Rehovot, Israel 1 2 2 3 Isabelle M Henry , Andrew T Groover , Matthew S Zinkgraf , Thomas H Tai and Luca Comai1, (1)Plant Biology and Genome Center, UC Davis, Davis, CA, W738: Solanaceae (2)US Forest Service, Davis, CA, (3)USDA-ARS, Davis, CA Reinventing Potato at the Diploid Level Shelley Jansky, USDA-ARS, Madison, WI, David Douches, Michigan State W743: Somatic Genome University, East Lansing, MI and Jeffrey Endelman, University of Wisconsin Molecular Correlates of Programmed DNA Elimination Department of Horticulture, Madison, WI Stephanie A Bryant, Joseph R Herdy, Vladimir Timoshevskiy and Jeramiah J Smith, University of Kentucky, Lexington, KY W739: Solanaceae

Transcriptional Control of Tomato Fruit Ripening Is Mediated By Diverse Positive and Negative Regulators W744: Somatic Genome Evolution of RNA Polyadenylation Sites James Giovannoni, USDA-ARS and Boyce Thompson Institute for Plant Research, Ithaca, NY Xiu-Qing Li, Agriculture and Agri-Food Canada, Fredericton, NB, Canada

W740: Somatic Genome W745: Sorghum/Millet Cell-Type-Specific Responses to DNA Damage Introduction Anne B Britt and Phillip Adam Conklin, University of California, Davis, CA Yinghua Huang, USDA ARS, Stillwater, OK

W741: Somatic Genome A Spatiotemporal Analysis of Plant DNA Replication in Developing Root Tips

Linda Hanley-Bowdoin1, Tae-Jin Lee1, Gregg G Hoffman2, Emily E Wear1, George C Allen1, William F Thompson1 and Hank Bass2, (1)NC State University, Raleigh, NC, (2)Florida State University, Tallahassee, FL

193 W746: Sorghum/Millet W749: Sorghum/Millet Genetic Analysis of Seed Nutritional Content in Tef Millet Dissecting Complex Traits in Sorghum with a Nested Association Mapping Population Jeffrey L Bennetzen1, Xuewen Wang2, Greg Ziegler3, Taoran Dong1, Srini Chaluvadi1, Mark E Sorrells4, Ivan Baxter3 and Katrien M Devos1, Geoffrey Morris, Kansas State University, Manhattan, KS (1)University of Georgia, Athens, GA, (2)Kunming Institute of Botany, Kunming, China, (3)USDA-ARS Plant Genetics Research Unit, St Louis, MO, (4)Cornell University, Ithaca, NY W750: Sorghum/Millet Potential of Multiseeded Mutant (msd) to Boost Sorghum Grain Yield W747: Sorghum/Millet Zhanguo Xin1, Yinping Jiao2, Gloria Burow3, Doreen Ware4, John Burke3 and 3 Genomic Selection of 1,000 Biomass Sorghum Accessions and Empirical Chad Hayes , (1)USDA ARS, Lubbock, TX, (2)Cold Spring Harbor Validation Laboratory, Cold Spring Harbor, NY, (3)USDA-ARS, Lubbock, TX, (4)Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY 1 1 2 3 Xiaoqing Yu , Xianran Li , Yuye Wu , Sharon E Mitchell , Kraig L Roozeboom2, Donghai Wang2, Rex Bernardo4, Mingli Wang5, Gary A Pederson5, Tesfaye T Tesso2 and Jianming Yu1, (1)Iowa State University, W751: Soybean Genomics Ames, IA, (2)Kansas State University, Manhattan, KS, (3)Cornell University, Highly Variable Regions in the Soybean Genome Ithaca, NY, (4)University of Minnesota, St Paul, MN, (5)USDA-ARS, PGRCU, Griffin, GA Matthew E Hudson, University of Illinois, Urbana, IL

W748: Sorghum/Millet W752: Soybean Genomics Comparative Genetics of Inflorescence and Plant Height Components in Exploring and Exploiting Soybean Seed Transcriptome Diversity Divergentcereal Lineages Represented By Sorghum (Panicoidae) and Rice Yong-Qiang (Charles) An, USDA-ARS, Plant Genetics Research at Donald (Oryzoidae) Danforth Plant Science Center, Saint Louis, MO, Wolfgang Goettel, USDA- Dong Zhang1, Andrew H Paterson2 and Wenqian Kong1, (1)University of ARS Plant Genetics Research at Danforth Plant Science Center, Saint Louis, Georgia, Athens, GA, (2)Plant Genome Mapping Laboratory, University of MO, Earl Taliercio, USDA-ARS, Soybean and Nitrogen Fixation Research, Georgia, Athens, GA Raleigh, NC, Mingli Wang, USDA-ARS, PGRCU, Griffin, GA and Zongrang Liu, USDA-ARS, AFRS, Kearneysville, WV

W753: Soybean Genomics W757: Genomics of Tissue Regeneration in Plants and Animals Comprehensive Genomic Survey of Genes Related to Domestication and Plant Regeneration Requires Cellular Communication Improvement in Soybeans Moshe Reuveni, ARO, Volcani Center, Bet Dagan, Israel Zhixi Tian, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China W758: Genomics of Tissue Regeneration in Plants and Animals

Botryllus schlosseri, a Model Organism for the Study of Tissue W754: Soybean Genomics Regeneration and the Evolution of Immunity Genetic Analysis of Genomic Locations Underlying Domestication Transitions in Soybean Ayelet Voskoboynik, Institute of Stem Cell Biology and Regenerative Medicine Stanford University, Pacificgrove, CA Soon-Chun Jeong, Korea Research Institute of Bioscience and Biotechnology, Chungbuk, South Korea W759: Genomics of Tissue Regeneration in Plants and Animals

The Trajectory of Transdifferentiating Cells in Root Regeneration W755: Soybean Genomics Evolutionary Novelty of Duplicates: Insights from a Case Study of Kenneth D Birnbaum, New York University, New York, NY Soybean Stem Growth Habit Jieqing Ping1, Lianjun Sun1, Yunfeng Liu1, Meixia Zhao1, Zhixi Tian2, Hanh W760: Genomics of Tissue Regeneration in Plants and Animals Nguyen3, Yinghui Li4, Lijuan Qiu4, Randy Nelson5, Thomas E Clemente3, Transcriptomics of Neural Regeneration in Echinoderms: A Roadmap for James E Specht3 and Jianxin Ma1, (1)Purdue University, West Lafayette, IN, Future Research (2)Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China, (3)University of Nebraska, Lincoln, NE, (4)Chinese Vladimir Mashanov, University of Puerto Rico, Department of Biology, Acdemy of Agricultural Sciences, Beijing, China, (5)USDA ARS, Urbana, IL Puerto Rico, PR

W756: Soybean Genomics Molecular Characterization of Transgenic Soybean Overexpressing the GM-RLK3 Osman Radwan, University of Illinois at Urbana-Champaign, Urbana, IL, Schuyle Korban, Uinversity of Illinois at Urbana-Champaign, Urbana, IL and Glen L Hartman, USDA-ARS, Urbana, IL

194 W761: Integrated Breeding Platform: Tools, Databases and Applications for W764: Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding Plant Breeding Overview and Progress on Developing the Integrated Breeding Platform CG Back Office : Working with IBP to Deliver High Density Genomics Tools Graham McLaren1, Fred Okono1, Chunlin He2, Arllet Portugal3, Mark Sawkins1, Ndeye Ndack Diop1, Jean-Marcel Ribaut4, Jan Erik Backlund5, Jean Susan McCouch, Cornell University, Ithaca, NY 6 7 Phillips and Rebecca Berrigan , (1)Generation Challenge Programme, Texcoco, Mexico, (2)Generation Challenge Programme, c/o CIMMYT, Texcoco, Mexico, (3)Generation Challenge Program, Texcoco, Mexico, W765: Integrated Breeding Platform: Tools, Databases and Applications for (4)Generation Challenge Programme, Mexico, Mexico, (5)CGIAR, Plant Breeding Indianapolis, IN, (6)Leafnode Llc, San Francisco, CA, (7)Leafnode Llc, Mill A Public API for Crop Breeding Data Valley, CA David E Matthews, USDA ARS, Ithaca, NY

W762: Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding W766: Integrated Breeding Platform: Tools, Databases and Applications for Plant Breeding Breeding View - Statistical Workflows for Plant Breeding Application of Information Systems in Collaborative Cowpea Breeding for Mark Sawkins, Generation Challenge Programme, Texcoco, Mexico Sub-Saharan Africa

1 2 3 4 Bao Lam Huynh , Ndiaga Cissé , Issa Drabo , Ousmane Boukar , Batieno T W763: Integrated Breeding Platform: Tools, Databases and Applications for Benoît Joseph5,6, Rogerio Chiulele7, Ibrahim Atokple8, Francis Kusi8, Steve Plant Breeding Wanamaker1, Timothy J Close1 and Philip A Roberts1, (1)University of ISMU 20: A Multi-Algorithm Pipeline for Genomic Selection California - Riverside, Riverside, CA, (2)Institut Sénégalais de Recherches Agricoles, Bambey, Senegal, (3)Institut de l'Environnement et de Recherches Abhishek Rathore1, Roma R Das1, Manish Roorkiwal1, Dadakhalandar Agricoles, Saria, Burkina Faso, (4)International Institute of Tropical Doddamani1, Mohan Telluri1, David Edwards2, Mark E Sorrells3, Janez Jenko4, Agriculture, Ibadan, Nigeria, (5)West African centre for Crop Improvement, John Hickey4, Jean-Luc Jannink3 and Rajeev K Varshney1, (1)ICRISAT, Legon, Ghana, (6)Institut de l'Environnement et de Recherches Agricoles, Hyderabad, India, (2)University of Western Australia, Perth, Australia, Kamboinse, Burkina Faso, (7)Eduardo Mondlane University, Maputo, (3)Cornell University, Ithaca, NY, (4)The University of Edinburgh, Scotland, Mozambique, (8)Savanna Agricultural Research Institute, Nyankpala, Ghana UK, Midlothian, Scotland

W767: Leveraging Genomics Tools to Accelerate Breeding for Climate W770: Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience Resilience Cowpea: Putting Genomics into Practice for Food Security Improving Food Security in Africa By Enhancing Resistance to Newcastle Disease and Heat Stress in Chickens: Genomics to Improve Poultry Timothy J Close1, Philip A Roberts1, Stefano Lonardi1, Issa Drabo2, Batieno T Benoît Joseph3, Tignegre Jean-Baptiste De La Salle2, Ibrahim Atokple4, Francis Huaijun Zhou1, David A Bunn2, Rodrigo Gallardo3, Susan J Lamont4, Jack Kusi4, Christian Fatokun5, Ousmane Boukar5, Ndiaga Cissé6, Sassoum Lo1, CM Dekkers5, Amandus Muhairwa6, Peter Msoffe6, Boniface Kayang7, Mitchell R Lucas1, Hamid Mirebrahim1, Maria Muñoz-Amatriain1, Steve Augustine Naazie7, George Aning7 and Carl J Schmidt8, (1)University of Wanamaker1, Savanah M St Clair1, Yi-Ning Guo1, Bao Lam Huynh1, Arsenio California, Davis, CA, (2)Feed the Future Innovation Lab for Genomics to Daniel Ndeve1 and Jansen Rodrigo Pereira Santos1, (1)University of California, Improve Poultry, Davis, CA, (3)University of California, Davis, Davis, CA, Riverside, CA, (2)Institut de l'Environnement et de Recherches Agricoles, (4)Iowa State University, Ames, IA, (5)Department of Animal Science, Iowa Saria, Burkina Faso, (3)West African centre for Crop Improvement, Legon, State University, Ames, IA, (6)Sokoine University of Agriculture, Chuo Kikuu, Ghana, (4)CSIR-Savanna Agricultural Research Institute (CSIR-SARI), Tanzania, (7)University of Ghana, Legon, Ghana, (8)University of Delaware, Tamale, Ghana, (5)International Institute of Tropical Agriculture, Ibadan, Newark, DE Nigeria, (6)Institut Sénégalais de Recherches Agricoles, Bambey, Senegal W771: Leveraging Genomics Tools to Accelerate Breeding for Climate W768: Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience Resilience Genomics Data Management: A Global Perspective Genomics-Assisted Breeding for Climate Resilience in Tropical Maize Kevin R Hayes, Pioneer Hi-Bred International, Johnston, IA Raman Babu, Centro International de Mejoramiento de Maiz y Trigo (CIMMYT), Greater Hyderabad, India W772: Plant Molecular Breeding

Welcome and Opening Remarks W769: Leveraging Genomics Tools to Accelerate Breeding for Climate Resilience Yunbi Xu, CIMMYT/CAAS, Beijing, China Engineering Drought Tolerance in Grain Crops Eduardo Blumwald, University of California-Davis, Davis, CA W773: Plant Molecular Breeding The Post-Genomics Era Rice Breeding: Perspectives and Practices Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing, Beijing, China

195 W774: Plant Molecular Breeding W778: Plant Molecular Breeding Progress and Perspectives in CIMMYT Wheat Molecular Breeding Can Genomic Selection Help Chickpea Breeding to Develop Superior Lines with Higher Yield Under Drought Stress? Susanne Dreisigacker1, Jose Crossa1, David Bonnett1, Deepmala Sehgal2, Karim Ammar1, Matthew Reynolds1 and Hans-Joachim Braun1, (1)CIMMYT, Manish Roorkiwal1, Abhishek Rathore1, Roma R Das1, Muneendra Singh1, Mexico DF, Mexico, (2)CIMMYT, Mexico, Mexico Srinivasan Samineni1, Pooran M Gaur1, Bharadwaj Chellapilla2, Shailesh 2 3 4 5 Tripathi , John Hickey , Aaron Lorenz , Jean-Luc Jannink and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)IARI, Delhi, India, (3)The W775: Plant Molecular Breeding University of Edinburgh, Scotland, UK, Midlothian, Scotland, (4)University of Genome Wide Association Study in Maize Nebraska–Lincoln, Lincoln, NE, (5)Cornell University, Ithaca, NY

Jianbing Yan, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China W779: Plant Molecular Breeding Closing Remarks W776: Plant Molecular Breeding Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing, Beijing, China Identifying FATB1a Deletion That Causes Reduced Palmitic Acid Content in Soybean N87-2122-4 to Develop a Diagnostic Marker for a High Throughput Marker-Assisted Selection W780: Plant Science at the JGI and KBase Joint Genome Institue Plant Science Program Nicole Bachleda, Anh Pham, Roger Boerma and Zenglu Li, Institute of Plant Breeding, Genetics, and Genomics, University of Georgia, Athens, GA Jeremy Schmutz1, Kerrie W Barry1, David M Goodstein1, Jane Grimwood2, 1 2 3 1 1 Uffe Hellsten , Jerry Jenkins , Gerald A Tuskan , John Vogel , Jim Bristow and Daniel S Rokhsar1, (1)DOE Joint Genome Institute, Walnut Creek, CA, W777: Plant Molecular Breeding (2)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (3)Oak Ridge Green Super Rice Breeding Technology National Laboratory, Oak Ridge, TN

Jauhar Ali, PBGB, International Rice Research Institute, Metro Manila, Philippines W781: Plant Science at the JGI and KBase Plant Science in KBase Dave Weston, Oak Ridge National Laboratory, Oak Ridge, TN

W782: Plant Science at the JGI and KBase W787: The Analysis and Role of the Microbiome Panicum hallii: Genomics Enabled Perennial Grass Model Accurate, Multi-Kb Illumina Truseq Synthetic Reads Resolve Complex Microbial Populations and Detect Rare Microorganisms Thomas Juenger, University of Texas at Austin, Austin, TX Itai Sharon, University of California, Berkeley, Berkeley, CA W783: Plant Science at the JGI and KBase Highly Efficient Discovery of Novel Genes in the Complex Perennial W788: The Analysis and Role of the Microbiome Populus Using GWAS and Coexpression Analyses in KBase The Microbial Proteome Associated with High Methane Emissions in Cattle Determined By Shotgun Metagenomic Sequencing Wellington Muchero, Oak Ridge National Laboratory, Oak Ridge, TN Mick Watson, The Roslin Institute and R(D)SVS, University of Edinburgh, Edinburgh, United Kingdom W784: Plant Science at the JGI and KBase

KBase Metabolic Modeling with Sphagnum W789: The Analysis and Role of the Microbiome Samuel M D Seaver1, Shengqiang Shu2, Jonathan Shaw3, Kerrie W Barry2, 4 4 5 Characterization of the Bovine Nasopharyngeal Microbiome in the Jeremy Schmutz , Jane Grimwood and Jerry Jenkins , (1)Argonne National Context of Respiratory Disease and Treatment Laboratory, Argonnne, IL, (2)DOE Joint Genome Institute, Walnut Creek, CA, (3)Duke University, Durham, NC, (4)HudsonAlpha Institute for Timothy PL Smith, USDA-ARS, US Meat Animal Research Center, Clay Biotechnology, Huntsville, AL, (5)DOE Joint Genome Institute, Huntsville, AL Center, NE

W785: Plant Science at the JGI and KBase W790: Post-transcriptional Gene Regulation How to Work with the JGI and KBase Global analysis of RNA-protein interactions and RNA secondary structure in eukaryotes John Vogel, DOE Joint Genome Institute, Walnut Creek, CA and Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY Brian D Gregory, University of Pennsylvania, Philadelphia, PA

W786: The Analysis and Role of the Microbiome W791: Post-transcriptional Gene Regulation How Well Can We Reconstruct Metagenome Content? Thoughts and Data To be Added on Metagenome Assembly Klemens Hertel, University of California, Irvine, Irvine, CA C Titus Brown, Michigan State University, East Lansing, MI

196 W792: Post-transcriptional Gene Regulation W796: Speciation Genomics A Transformative Platform Deciphers the RNA Structural Code in Living The Fate of Chromosomes and Alleles in Brassica Allohexaploids Cells Annaliese S Mason1, Matthew N Nelson2, Junko Takahira2, Chhaya Atri3, Yiliang Ding, John Innes Centre, Norwich, United Kingdom Wallace A Cowling2, Gustavo Moreira Alves1, Arkaprava Chaudhuri1, Alice C 1 1 1 1 Hayward , Mohana Ragu , Ning Chen , Jessica Dalton-Morgan , Frederique Eber4, Virginie Huteau4, Olivier Coriton4, Anne-Marie Chevre4 and Jacqueline W793: Post-transcriptional Gene Regulation Batley2, (1)University of Queensland, Brisbane, Australia, (2)The University of To be Added Western Australia, Perth, Australia, (3)Plant Breeding & Genetics Department, Punjab Agricultural University, Punjab, India, (4)Unité Mixte de Recherche Yoseph Barash, Perleman School of Medicine, University Pennsylvania, Institut de Génétique, Environnement et Protection des Plantes, Institut Philadelphia, PA National de la Recherche Agronomique, Le Rheu, France

W794: Post-transcriptional Gene Regulation W797: Speciation Genomics Functional Alternative Isoform Expression Analysis Using Long Read Speciation Genomics in Plants: Divergence Continuum and Beyond Technologies Christian Lexer1, Eligio Bossolini2, Celine Caseys3, Myriam Heuertz4, Ana Conesa, Centro de Investigación Príncipe Felipe, Valencia, Spain Michael Kessler5, Dorothea Lindtke6, Margot Paris1, Peter P Pearman7, Nicolas 8 1 9 10 Salamin , Kai N Stölting , Rafael O Wüest and Niklaus E Zimmermann , (1)University of Fribourg, Fribourg, Switzerland, (2)Bayer CropScience, Gent, W795: Speciation Genomics Belgium, (3)University of British Columbia, Vancouver, BC, Canada, (4)INIA Sequencing of the Pedunculate Oak Genome and Contribution of Gene Forest Research Centre, Madrid, Spain, (5)University of Zurich, Zurich, Expression and Single Nucleotide Polymorphisms to Speciation in the Switzerland, (6)University of Sheffield, Sheffield, United Kingdom, European White Oak Species Complex (7)University of the Basque Country, Leioa, Spain, (8)University of Lausanne,

1 1 2 3 Lausanne, Switzerland, (9)Univ Grenoble Alpes LECA, Grenoble, France, Christophe Plomion , Thibault Leroy , Jean-Marc Aury , Joelle Amselem , (10)Swiss Federal Research Institute WSL, Birmensdorf, Switzerland Gregoire Le Provost1, Catherine Bodénès1, Laure Villate1, Isabelle Lesur1, Delphine Steinbach3, Hélène Bergès4, François Ehrenmann1, Karine Labadie2, Florent Murat5, Patricia Faivre Rampant6, Valerie Barbe2, Patrick Wincker2, W798: Speciation Genomics Hadi Quesneville3, Jerome Salse5 and Antoine Kremer1, (1)INRA, Cestas, TBA France, (2)CEA - Genoscope, Evry, France, (3)INRA - URGI, Versailles, France, (4)INRA - CNRGV, Castanet Tolosan, France, (5)INRA Clermont- Jenny Boughman, Michigan State University, East Lansing, MI Ferrand, Clermont-Ferrand, France, (6)INRA Evry, Evry, France

W799: Statistical Genomics W804: Sugar Beet An Empirical Bayes Method for Genome-Wide Association Studies Association Between SNP183 and Bolting Tendency in Sugar Beet

Qishan Wang, University of California, Riverside, Riverside, CA Chiara Broccanello1, Piergiorgio Stevanato1, Andreas Müller2, Dario Cantu3 1 and Massimo Saccomani , (1)DAFNAE, Università degli Studi di Padova, Legnaro (Padova), Italy, (2)Strube Research GmbH & Co KG, Söllingen, W800: Statistical Genomics Germany, (3)University of California Davis, Davis, CA Using Path Analysis to Reveal Novel Components of the Sex Determination Hierarchy in Drosophila melanogaster W805: Sugar Beet Lauren M McIntyre, University of Florida, Gainesville, FL Molecular Dissection and Marker Assisted Selection to Cercospora Leaf Spot in Sugar Beet W801: Statistical Genomics Kazunori Taguchi, Kazuyuki Okazaki, Yosuke Kuroda and Hiroyuki Getting Power Back from Population Structure and Kinship in Genome- Takahashi, Hokkaido Agricultural Research Center, Hokkaido, Japan Wide Association Studies Zhiwu Zhang, Washington State University, Pullman, WA W806: Sugar Beet A Comparative Genomic Study of the C3 Sugar Beet and the C4 Edible Grain Amaranth W802: Statistical Genomics Locally Epistatic Genomic Relationship Matrices for Genomic Association Meeta Sunil, Nivedita Hariharan, Thejas Makam Shivakumar Gupta, Arjun and Prediction Sreedhar, Keerthivasan Chandradoss Raanin, Savita Karthikeyan, Bibha Choudhary and Subhashini Srinivasan, Institute of Bioinformatics and Deniz Akdemir, Cornell University, Ithaca, NY Applied Biotechnology, Bangalore, Karnataka, India

W803: Statistical Genomics W807: Sugar Beet A Tutorial of Partial Least Squares Analysis Gene Expression Profiling of Resistance and Susceptibility to Beet Curly Top Virus in Sugarbeet Shizhong Xu, University of California, Riverside, CA Imad Eujayl, USDA-ARS, Northwest Irrigation and Soils Res Lab, Kimberly, ID and Carl Strausbaugh, USDA-ARS-NWISRL, Kimberly, ID

197 W808: Sugar Beet W810: Sugar Cane (ICSB) Storage Root Developmental Milestones Resolved Using Complementary - Comparative Analysis of Miscanthus and Saccharum Reveals a Shared Omics Approaches Whole-Genome Duplication but Different Evolutionary Fates Belinda Townsend1, Stephen Powers2, David Hughes3, Delia Corol4, Aiming Changsoo Kim1, Xiyin Wang1, Tae-Ho Lee1, Katrin Jakob2, Geung-Joo Lee3 Qi5, Rachel O'Neill6, Paul Knox7, J Mitchell McGrath8, Jane Ward4 and and Andrew H Paterson1, (1)University of Georgia, Athens, GA, (2)Mendel Keywan Hassani-Pak1, (1)Rothamsted Research, Harpenden, United Kingdom, Biotechnology, Hayward, CA, (3)Chungnam National University, Daejeon, (2)Department of Computational and Systems Biology, Rothamsted Research, South Korea Hatfield, Hertfordshire, United Kingdom, (3)Department of Computational and Systems Biology, Hatfield, Hertfordshire, United Kingdom, (4)Department of Plant Biology and Crop Science,, Harpenden, Hertfordshire, United Kingdom, W811: Sugar Cane (ICSB) (5)School of Life and Medical Sciences, Hatfield, Hertfordshire, United Diversity and Exome Variation in Saccharum Spp Kingdom, (6)Centre for Plant Sciences, Faculty of Biological Sciences, Leeds, 1 1 1 1 2 West Yorkshire, United Kingdom, (7)Centre for Plant Sciences, Leeds, West Jianping Wang , Jian Song , Xiping Yang , Spurthi N Nayak , James Todd , 2 3 Yorkshire, United Kingdom, (8)Sugar beet and Beans Research Unit, East Hardev S Sandhu and Jack Comstock , (1)Agronomy Department, University Lansing, MI of Florida, Gainesville, FL, (2)Everglade Research and Education Center, Belle Glade, FL, (3)USDA-ARS, Canal Point, FL

W809: Sugar Beet W812: Sugar Cane (ICSB) Towards a Sugar Beet Reference Genome Using Optical Mapping Using Next Generation Sequencing for Tagging Stress Resistance Genes Glenda Willems1, Sigrid Vanstraelen2, Alexandra Burkholz3, Aude Darracq2, from S spontaneum Andrew G Sharpe4, Chushin Koh5 and Steve Barnes2, (1)SESVanderHave Belgium, Tienen, Belgium, (2)SESVANDERHAVE NV, Tienen, Belgium, Jong-Won Park, Texas AgriLife Research, Weslaco, TX, Qingyi Yu, Texas (3)SESVanderHave, Tienen, Belgium, (4)National Research Council Canada, A&M AgriLife Research, Dallas, TX, Thiago Benatti, CTC - Centro de Saskatoon, SK, Canada, (5)National Research Council of Canada, Saskatoon, Tecnologia Canavieira, Piracicaba, Brazil and Jorge A Da Silva, Texas A&M SK, Canada University, Weslaco, TX

W813: Sugar Cane (ICSB) TALEN-Mediated Precision Mutagenesis and Intragenic RNAi for Lignin Reduction in Sugarcane Je Hyeong Jung, Hugo Dermawan and Fredy Altpeter, University of Florida - IFAS, Gainesville, FL

W814: Sugar Cane (ICSB) W818: Sugar Cane Sequencing Initiative Metabolic Engineering of Sugarcane for Production of Oil and Increased Insights from a Long-Read Assembly of the Complex Sugarcane Genome Biomass Yield David Heckerman1, Carolina G Lembke2, Ravi Pandya3, Hayan Lee3, Bob Je Hyeong Jung1, Janice Zale1, Jae Yoon Kim1, Bhuvan Pathak1, Aloisio Davidson3, Marie-Anne Van Sluys4, Glaucia M Souza2 and Gabriel Rodrigues Vilarinho1, Aleel Grennan2, Hui Liu3, Ratna Karan1, Baskaran Kannan1, Alves Margarido5, (1)Microsoft, Santa Monica, CA, (2)Institute of Chemistry - Xiaoguo Zhang1, Xiuhua Chen1, Jason Candreva3, Rebecca A Slattery2, University of São Paulo, São Paulo, Brazil, (3)Microsoft Research, Redmond, Zhiyang Zhai3, Stephen Long2, Don Ort2, John Shanklin3 and Fredy Altpeter1, WA, (4)Universidade de São Paulo, Sao Paulo, Brazil, (5)USP / ESALQ, (1)University of Florida - IFAS, Gainesville, FL, (2)University of Illinois, Piracicaba, SP, Brazil Urbana-Champaign, Urbana, IL, (3)Brookhaven National Lab, Upton, NY W819: Sugar Cane Sequencing Initiative W815: Sugar Cane (ICSB) Sugarcane Genome De Novo Assembly Challenges

Genome Organization and Molecular Characterization of P1 Suppressor 1 2 3 from Indian Sugarcane Streak Mosaic Virus isolates Hayan Lee , Ravi Pandya , Gabriel Rodrigues Alves Margarido , Bob Davidson2, Jonas W Gaiarsa4, Carolina G Lembke5, Michael Schatz6, Marie- B Parameswari1, K Bagyalakshmi2, R Viswanathan2 and C Chinnaraja2, Anne Van Sluys7, Glaucia M Souza5 and David Heckerman8, (1)Stony Brook (1)Sugarcane Breeding Institute Regional Centre, Karnal, Haryana, India, University, Stony Brook, NY, (2)Microsoft Research, Redmond, WA, (3)USP / (2)Sugarcane Breedng Institute, Coimbatore, Tamil Nadu, India ESALQ, Piracicaba, SP, Brazil, (4)GaTE Lab - University of São Paulo, Sao Paolo, Brazil, (5)Institute of Chemistry - University of São Paulo, São Paulo, Brazil, (6)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, W816: Sugar Cane (ICSB) (7)Universidade de São Paulo, Sao Paulo, Brazil, (8)Microsoft, Los Angeles, Metabolic Changes Associated with the Development of Yellow Canopy CA Syndrome in Sugarcane Frederik C Botha, Sugar Research Australia Limited, Indooroopilly, Australia W820: Sugar Cane Sequencing Initiative Sugarcane BAC Sequence Genomic Platform W817: Sugar Cane Sequencing Initiative Marie-Anne Van Sluys, Universidade de São Paulo, Sao Paulo, Brazil The Genome Sequence of a Sugarcane Hybrid: Exploring Gene Alleles, Transcripts and Regulatory Elements Glaucia M Souza, Institute of Chemistry - University of São Paulo, São Paulo, Brazil

198 W821: Sugar Cane Sequencing Initiative W824: Swine Transcriptional Dynamics of Source-Sink Balance in Sugarcane, and the Identification of damaging mutations in porcine taste receptor and R570 Transcriptome to Support Sugarcane Genome Sequencing Initiative appetite-reward genes by genome capture coupled with high throughput sequencing Renato Vicentini1, Guilherme Targino Valente2, Lucas Eduardo Costa Canesin1, Claudio B C Silva1, Melina C Mancini1, Estela A Costa1, Danilo A Alex Clop1, Abdoallah Sharaf2, Anna Castelló1, Susanna Cirera3, Abe Sforça1, Michel Vincentz1 and Anete P Souza1, (1)University of Campinas - Huisman4, Merete Fredholm3, Pieter van As5 and Armand Sánchez6, (1)Centre UNICAMP, Campinas, Brazil, (2)Universidade Estadual Paulista - UNESP, for Research in Agricultural Genomics (CRAG), Cerdanyola del Valles, Spain, Botucatu, Brazil (2)Ain Shams University, Cairo, Egypt, (3)University of Copenhagen, Frederiksberg C, Denmark, (4)Hendrix-Genetics, Boxmeer, Netherlands, (5)Hendrix Genetics, Boxmeer, Netherlands, (6)Centre de Recerca en W822: Sugar Cane Sequencing Initiative Agrigenòmica (CRAG), Bellaterra, Spain Transcriptomic Analysis of Extreme Segregants in an Interspecific Saccharum F2 Population W825: Swine 1 2 3 1 Ching Man Wai , Jisen Zhang , Chifumi Nagai and Ray Ming , (1)University Comparative Analysis of the Gene Sets of Mammalian Sex Chromosomes of Illinois at Urbana-Champaign, Urbana, IL, (2)Fujian Agriculture and Forestry University, Fujian, China, (3)Hawaii Agriculture Research Center, Toby Hunt, Matt Hardy, Jane Loveland, Chris Tyler-Smith and Jennifer Kunia, HI Harrow, Wellcome Trust Sanger Institute, Cambridge, United Kingdom

W823: Swine W826: Swine Genomics Meets Metabolomics: Developing a Systems Biology Approach Whole Transcriptome Target Sequencing: A Tail Counting Method to Understand the Genetic Mechanisms Affecting Complex Traits in Pigs Jennifer Michal1, Xiang Zhou1, Rui Li1, Richard M Harland2 and Zhihua Luca Fontanesi1, Samuele Bovo2, Gianluca Mazzoni1, Giuseppina Schiavo1, Jiang1, (1)Washington State University, Pullman, WA, (2)University of Antonia Bianca Samorè1, Flaminia Fanelli3, Francesca Bertolini1, Emilio California Berkeley, Berkeley, CA 1 4 4 3 Scotti , Giuliano Galimberti , Daniela Giovanna Calò , Marco Mezzullo , Pier Luigi Martelli5, Rita Casadio5, Stefania Dall'Olio1 and Uberto Pagotto3, (1)Department of Agricultural and Food Sciences, University of Bologna, W827: Swine Bologna, Italy, (2)Department of Agricultural Sciences, University of Bologna, Research on Gilt First Estrus and Pubertal Development at USMARC Bologna, Italy, (3)Department of Medical and Surgical Sciences, Endocrynology Unit, University of Bologna, Bologna, Italy, (4)Department of Dan Nonneman, Clay A Lents, Jim F Schneider, Jeffrey L Vallet and Gary A Statistical Sciences, University of Bologna, Bologna, Italy, (5)Biocomputing Rohrer, USDA, ARS, USMARC, Clay Center, NE Group, University of Bologna, Bologna, Italy

W828: Swine W831: Swine Translational Genomics of Porcine Reproductive and Respiratory Evidence of RNA Editing in Pig Longissimus Dorsi Muscle Syndrome (PRRS) Catherine W Ernst1, Scott A Funkhouser2, Juan P Steibel1, Ronald O Bates1 Joan K Lunney1, Igseo Choi1, Hua Bao2, Arun Kommadath2, Le Luo Guan2, and Nancy E Raney1, (1)Department of Animal Science, Michigan State Graham S Plastow3, Raymond R R Rowland4, Sam M Abrams5, Jack CM University, East Lansing, MI, (2)Genetics Program, Michigan State University, Dekkers6 and Paul Stothard7, (1)APDL, BARC, ARS, USDA, Beltsville, MD, East Lansing, MI (2)Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada, (3)University of Alberta, Edmonton, AB, Canada, (4)Department of Diagnostic Medicine/Pathobiology, College of W832: Swine Veterinary Medicine, Kansas State University, Manhattan, KS, (5)USDA ARS Characterizing the Iowa State University Severe Combined Immune BARC, Beltsville, MD, (6)Department of Animal Science, Iowa State Deficient (SCID) Pig University, Ames, IA, (7)Department of Agricultural, Food and Nutritional 1 1 2 2 Science, Edmonton, AB, Canada Christopher K Tuggle , Ellis J Powell , Daniela Rajao , Crystal Loving , Kristina Feye1, Joan Cunnick1, Phillip C Gauger1, Amy Vincent2, Emily H 1 1 Waide and Jack CM Dekkers , (1)Iowa State University, Ames, IA, (2)USDA- W829: Swine ARS-NADC, Ames, IA Analysis of the Host Genetics Influence on PCV2 Susceptibility Daniel Ciobanu, University of Nebraska, Lincoln, NE W833: Synthetic Biology Precision Genome and Metabolic Engineering for Genetic Improvement of the Biofuel Feedstock Sugarcane W830: Swine Je Hyeong Jung1, Janice Zale1, Jae Yoon Kim1, Bhuvan Pathak1, Hui Liu2, CRISPR/Cas9-Mediated Genetic Engineering: Is CD163 an Entry 1 1 2 2 Mediator for PRRSv Infection? Baskaran Kannan , Ratna Karan , Jason Candreva , Zhiyang Zhai , John Shanklin2 and Fredy Altpeter1, (1)University of Florida - IFAS, Gainesville, Randall S Prather, Kristin M Whitworth, Jonathan A Green and Kevin Wells, FL, (2)Brookhaven National Lab, Upton, NY University of Missouri, Columbia, MO W834: Synthetic Biology Take Control of Your Gene Construction Projects with the BioXP™ 3200 System Julie Robinson, Synthetic Genomics, San Diego, CA

199 W835: Synthetic Biology W840: Systems Biology and Ontologies Comprehensive Suite of Vectors Suitable for Wheat Transformation Transcription Start Site Sequencing Strongly Informs Gene Regulatory Network Inference Alison K Huttly, Rothamsted Research, Harpenden, United Kingdom Molly Megraw, Oregon State University, Corvallis, OR W836: Synthetic Biology The Plantseed Resource for Functional Annotation and Cross-Kingdom W841: Systems Biology and Ontologies Comparative Genomics of Plant Genomes Facilitating Efficient Knowledge Management and Discovery in the Agronomic Sciences Samuel M D Seaver, Argonne National Laboratory, Argonne, IL Aravind Venkatesan, Institut de biologie Computationnelle, Montpellier, France W837: Synthetic Biology

Metabolic Fingerprinting of Contaminant Microorganisms Present in the Fermentative Process of Ethanol W842: Systems Biology and Ontologies New Phytologist and the Plant Ontology: Working Together to Enhance Mariana de Souza e Silva, Ilara G Bundzinsk, Thais Regiani, Fabrício E Journal Content Moraes and Carlos A Labate, ESALQ/USP, Piracicaba, Brazil 1 2 2 3 Sarah Lennon , Laurel Cooper , Pankaj Jaiswal , Helen Ougham and Dennis Wm Stevenson4, (1)New Phytologist, Lancaster, United Kingdom, W838: Synthetic Biology (2)Department of Botany & Plant Pathology, Oregon State University, VitisCyc: A Metabolic Pathway Knowledgebase for Grape (Vitis vinifera) Corvallis, OR, (3)Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth, Wales, (4)New York Botanical Garden, Bronx, NY Sushma Naithani, Department of Botany & Plant Pathology, Oregon State

University, Corvallis, OR W843: Systems Biology and Ontologies Inferring Gene Ontologies from Molecular Networks W839: Synthetic Biology Comparison of Sequence Changes in Rice Regenerants and Transformants Michael Kramer, Department of Medicine, University of California, San Diego, La Jolla, CA Yue-ie C Hsing, Institute Plant and Microbial Biology, Academia Sinica,,

Taipei, Taiwan

W844: Systems Biology and Ontologies W848: Systems Genomics Metabolomics and Analysis of Quantitative Traits: State of the Art, The Molecular Mechanisms of Crop Quality: Cloning and Systems Challenges and Future Perspectives Analysis of 474 Genes Controlling Fiber Length in Cotton, Gossypium hirsutum L and G barbadense L Aaron Fait, Ben-Gurion University, Midreshet Ben Gurion, Israel 1 1 1 1 1 Yun-Hua Liu , Meiping Zhang , Yang Zhang , Wayne Smith , Steve Hague , Sing-Hoi Sze1, Jun Zhu2, James Frelichowski3 and Hong-Bin Zhang1, (1)Texas W845: Systems Biology and Ontologies A&M University, College Station, TX, (2)Zhejiang University, Hangzhou, The Interplay of DNA Methylation, Histone Modification and Gene China, (3)USDA-ARS, College Station, TX Activity in Soybean Seed Development Jer-Young Lin1, Min Chen1, Julie Pelletier2, Russell Baden2, John Harada2 and W849: Systems Genomics 1 Robert B Goldberg , (1)University of California, Los Angeles, CA, Bridging Physiological and Evolutionary Time Scales in a Gene (2)University of California, Davis, CA Regulatory Network

Gwenaelle Marchand1, Vân Anh Huynh-Thu2, Nolan Kane3, Sandrine Arribat4, W846: Systems Genomics Didier Varès1, David Rengel1, Sandrine Balzergue5, Loren H Rieseberg6, Soybean Root Hair, a Single Cell Model to Study Plant-Microbe Patrick Vincourt1, Pierre Geurts2, Matthieu Vignes7 and Nicolas Langlade1, Interactions, Abiotic Stress and Epigenetic Regulation (1)INRA LIPM, Castanet-Tolosan, France, (2)University of Liège, Liège, Belgium, (3)University of Colorado, Boulder, CO, (4)INRA - URGV, Evry, Md Shakhawat Hossain, University of Missouri, Columbia, MO France, (5)INRA URGV, Evry, France, (6)University of British Columbia, Vancouver, BC, Canada, (7)INRA MIAT, Castanet-Tolosan, France W847: Systems Genomics Systems Biology Analysis of Mechanism of Host Response to Avian W850: Systems Genomics Influenza Virus Infection in Two Genetically Distinct Chicken Inbred Complementary Regulatory Networks Enabled By Parallel Transcriptome Lines and Proteome Dynamics Huaijun Zhou, University of California, Davis, CA, Ying Wang, University of Steven Briggs, University of California, San Diego, La Jolla, CA California Davis, Davis, CA, Neil D Huefner, University of California - Davis, Davis, CA, Blanca Lupiani, Texas A&M University, college station, TX, Sanjay Reddy, Texas A&M University, College Station, TX and Susan J Lamont, Iowa State University, Ames, IA

200 W851: Systems Genomics W854: The National Plant Genome Initiative -- Research Challenges and Draft Genome of Horseweed Illuminates Expansion of Gene Families That Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and Might Endow Herbicide Resistance the Microbiome? TBD C Neal Stewart Jr1, Yanhui Peng1, Zhou Lai2, Thomas Lane3, Madhugiri Nageswara-Rao3, Miki Okada4, Marie Jasieniuk4, Henriette O'Geen5, R Leon Kochian, Robert W Holley Center, USDA-ARS & Cornell University, Douglas Sammons6 and Loren H Rieseberg7, (1)Department of Plant Sciences, Ithaca, NY University of Tennessee, Knoxville, TN, (2)UTHSC-San Anotino, San Antonio, TX, (3)University of Tennessee, Knoxville, TN, (4)University of California - Davis, Davis, CA, (5)UC Davis Genome Center, Davis, CA, W855: The National Plant Genome Initiative -- Research Challenges and (6)Monsanto Company, St Louis, MO, (7)University of British Columbia, Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and Vancouver, BC, Canada the Microbiome? TBD W852: The National Plant Genome Initiative -- Research Challenges and Jan E Leach, Colorado State University, Fort Collins, CO Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and the Microbiome? W856: The National Plant Genome Initiative -- Research Challenges and TBD Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and Gary Atlin, Bill & Melinda Gates Foundation, Seattle, WA the Microbiome? TBD W853: The National Plant Genome Initiative -- Research Challenges and Venkatesan Sundaresan, University of California-Davis, Davis, CA Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and the Microbiome? W857: The National Plant Genome Initiative -- Research Challenges and TBD Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and Edgar Spalding, University of Wisconsin Madison, Madison, WI the Microbiome? TBD Dave Weston, Oak Ridge National Laboratory, Oak Ridge, TN

W858: The National Plant Genome Initiative -- Research Challenges and W862: The Resurgence of Reference Quality Genome Sequence Resouirce Needs in Phenotyping, Cyberinfrastructure & Bioinformatics, and Current Options for Creating Genome Assemblies, and their Uses the Microbiome? TBD Timothy PL Smith, USDA-ARS, US Meat Animal Research Center, Clay Center, NE Doreen Ware, Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY W863: The Resurgence of Reference Quality Genome Sequence

An in vitro Long-Range Mate-Pair Protocol for Genome Scaffolding W859: The Resurgence of Reference Quality Genome Sequence The Resurgence of Reference Quality Genome Sequence Richard Green, University of California, Santa Cruz, Santa Cruz, CA

Michael Schatz, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY W864: The Resurgence of Reference Quality Genome Sequence

Reference Quality Genome Assembly W860: The Resurgence of Reference Quality Genome Sequence Old School/New School Genome Sequencing: One Step Backward - a Daniel S Rokhsar, DOE Joint Genome Institute, Walnut Creek, CA Quantum Leap Forward Rod A Wing1, Jianwei Zhang1, Dave Kudrna1, Dario Copetti2, Yeisoo Yu1, W865: Transposable Elements Seunghee Lee1, Jayson Talag1 and Ann Danowitz2, (1)Arizona Genomics Recent Expansion of a Novel LTR Retrotransposon in Sorghum bicolor Institute, University of Arizona, Tucson, AZ, (2)Arizona Genomics Institute, Tuscon, AZ Hui Guo, Yuannian Jiao, Xu Tan, Xiyin Wang, Huizhe Jin and Andrew H Paterson, Plant Genome Mapping Laboratory, University of Georgia, Athens, GA W861: The Resurgence of Reference Quality Genome Sequence

Reference Genome Assembly in 2015 - Methods for the 21st Century Kim C Worley, Yue Liu, Shwetha C Murali, Daniel S T Hughes, Adam C English, Xiang Qin, Stephen Richards, Jeffrey Rogers, Yi Han, Vanessa Vee, Min Wang, Eric Boerwinkle, Donna M Muzny and Richard A Gibbs, Baylor College of Medicine, Houston, TX

201 W866: Transposable Elements W870: Transposable Elements Transposable Elements in the A and B Genomes of Peanut Transposition of a Rice Mutator-like Element in Yeast

David Bertioli1, Dongying Gao1, Bruna S Vidigal2, Lutz Froenicke3, Steven B Dongyan Zhao, Armenia A Ferguson and Ning Jiang, Michigan State Cannon4, Brian Abernathy1, Longhui Ren5, Ana Claudia Guerra Araujo6, University, East Lansing, MI 7 8 3 Patricia Messenberg Guimarães , Soraya Bertioli , Richard Michelmore and Scott A Jackson1, (1)University of Georgia, Athens, GA, (2)Universidade de Brasília, Brasilia, Brazil, (3)Genome Center, University of California, Davis, W871: Transposable Elements CA, (4)USDA-ARS-CICGRU, Ames, IA, (5)Iowa State University, Ames, IA, BARE, a Multiply Mobile Retrotransposon (6)EMBRAPA, Brasilia, Brazil, (7)Cenargen-EMBRAPA, Brasilia, Brazil, 1 2 2 3 (8)University of Georgia, Winterville, GA Alan H Schulman , Marko Jääskeläinen , Wei Chang , Carlos M Vicient , Eva Gómez-Orte4 and Jaakko Tanskanen1, (1)LUKE & University of Helsinki,

Helsinki, Finland, (2)Institute of Biotechnology, University of Helsinki, W867: Transposable Elements Helsinki, Finland, (3)Center for Research in Agrigenomics CRAG (CSIC- Plant Genome Reshuffling via Rolling Circle Helitrons IRTA-UAB-UB), Barcelona, Spain, (4)CIBIR (Centre for Biomedical Research of La Rioja), Logroño, Spain Chunguang Du, Montclair State University, Montclair, NJ W872: Tripal Database Network and Initiatives W868: Transposable Elements Tripal Overview & Future Developments Genome-Wide Analysis of Transposon Insertion and Excision Patterns in the Two Rice Species O sativa and O glaberrima Stephen P Ficklin, Washington State University, Pullman, WA

Thomas Wicker and Stefan Roffler, University of Zurich, Zurich, Switzerland W873: Tripal Database Network and Initiatives

Extending Tripal for Specialized Display and Management of Diversity W869: Transposable Elements and Breeding Data

Auto-Regulation of a Rice Mariner-like Element By a Subterminal 1 2 2 1 Transposase Binding Site Lacey-Anne Sanderson , Stephen P Ficklin , Dorrie Main and Kirstin Bett , (1)University of Saskatchewan, Saskatoon, SK, Canada, (2)Washington State Guojun Yang, University of Toronto, Mississauga, ON, Canada University, Pullman, WA

W874: Tripal Database Network and Initiatives W878: Tripal Database Network and Initiatives GDR/CottonGen: Converting Legacy Sites to Tripal The Hardwood Genomics Database: Current Status and Future Directions after Four Years of Development Sook Jung, Jing Yu, Taein Lee, Chun-Huai Cheng, Stephen P Ficklin and Dorrie Main, Washington State University, Pullman, WA Margaret Staton1, Nate Henry1, Mark Cook1, Thomas Lane1, Thomas Lane1, 1 2 3 4 Jack Davitt , Mark Coggeshall , Oliver Gailing , Haiying Liang , Jeanne Romero-Severson5, Scott Schlarbaum6, Ketia Shumaker7, Nicholas Wheeler8 W875: Tripal Database Network and Initiatives and John E Carlson9, (1)University of Tennessee Institute of Agriculture, The i5k Workspace@Nal - a Tripal Based Arthropod Genome Portal Knoxville, TN, (2)University of Missouri, Columbia, MO, (3)Michigan Technological University, Houghton, MI, (4)Clemson University, Clemson, Christopher Childers, USDA/Agricultural Resarch Service/National SC, (5)University of Notre Dame, Notre Dame, IN, (6)University of Tennessee, Agricultural Library, Beltsville, MD Knoxville, TN, (7)The University of West Alabama, Livingston, AL, (8)Pennsylvania State University, Centralia, WA, (9)Pennsylvania State University, University Park, PA W876: Tripal Database Network and Initiatives

Tripal within the Arabidopsis Information Portal (AIP) W879: Triticeae 1 Maria Kim, Vivek Krishnakumar, Benjamin D Rosen, Chia-Yi Cheng, Erik Positional Cloning of the Wheat Vernalization Gene VRN-D4 Reveals the Ferlanti, Jason R Miller and Christopher D Town, J Craig Venter Institute, Origin of Spring Growth Habit in Ancient Hexaploid Wheats from India Rockville, MD 1 2 1 3 Nestor Kippes , Bala Ani Akpinar , Hans Vasquez-Gross , Shiaoman Chao , Eduard Akhunov4, Hikmet Budak2, Kenji Kato5 and Jorge Dubcovsky1, W877: Tripal Database Network and Initiatives (1)University of California Davis, Davis, CA, (2)Sabanci University, Istanbul, Tripal within the Legumes Genomics Community Turkey, (3)USDA-ARS, Fargo, ND, (4)Kansas State University, Manhattan, KS, (5)Okayama University, Okayama, Japan Ethalinda Cannon, Iowa State University, Ames, IA

202 W880: Triticeae 1 W882: Triticeae 1 Identification of Cer-Zv, a Gene Responsible for Cutin Formation in the Molecular Characterization of the Cytoplasmic Male Sterility System Barley Leaf Cuticle Underlying the Breeding and Production of HyvidoTM Hybrids in Barley Chao Li1, Guoxiong Chen2, Kohei Mishina1, Mohammad Pourkheirandish1, Carine Rizzolatti1, Nathalie Rodde2, Hélène Bergès2, Pierre Pin1, Edouard Cheng Liu1, Nadia Anwar1, Pengshan Zhao2, Udda Lundqvist3, Christiane Tatara3, Françoise Budar4, Hakim Mireau4, Paul Bury5 and Jan Gielen1, Nawrath4, Takashi R Endo5 and Takao Komatsuda1, (1)National Institute of (1)Syngenta, Saint-Sauveur, France, (2)INRA - CNRGV, Castanet Tolosan, Agrobiological Sciences, Tsukuba, Japan, (2)Key Laboratory of Stress France, (3)Syngenta, Orgerus, France, (4)INRA, Versailles, France, Physiology and Ecology in Cold and Arid Regions, Gansu Province, Cold and (5)Syngenta, Market Stainton, England Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzhou, China, (3)Nordic Genetic Resource Center, Alnarp, Sweden, (4)Department of Plant Molecular Biology, University of W883: Triticeae 1 Lausanne, Lausanne, Switzerland, (5)Centre of Plant Structural and Functional Mapping Stem Rust Resistance on Chromosome 3BL in Thatcher That Genomics, Institute of Experimental Botany, Holice, Czech Republic Interacts with Lr34

Colin Hiebert, Agriculture and Agri-Food Canada, Morden, MB, Canada W881: Triticeae 1

Genetic Analysis of Pre-Anthesis Phase Duration in Spring Barley W884: Triticeae 1 (Hordeum vulgare L) Genetic Dissection of Mechanisms Underlying Drought Tolerance in Ahmad Mohammad I Alqudah1, Rajiv Sharma2, Raj K Pasam3, Andreas Wheat Graner1, Benjamin Kilian4 and Thorsten Schnurbusch1, (1)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, Delphine Fleury, ACPFG, University of Adelaide, Adelaide, Australia (2)College of Life Science, University of Dundee at The James Hutton Institute, Dundee, United Kingdom, (3)Biosciences Research Division, W885: Triticeae 2 Agriculture Productivity, Department of Environment and Primary Industries, Victoria, Australia, (4)Bayer CropScience NV, Innovation Center, Zwijnaarde, Genomic Diversity, Adaptation and Selection in Barley Belgium Robbie Waugh, The James Hutton Institute, Dundee, United Kingdom

W886: Triticeae 2 W889: Triticeae 2 A 43 Gb Genome Map of the Barley Genome As a Tool for Assembly Analysis of Highly Repetitive BAC Clones Reveals Rapid Evolution of highly variable Gene Clusters in Triticeae Alan H Schulman1, Alex Hastie2, Martin Mascher3, Hana Simkova4, Jan Vrana4, Jaakko Tanskanen1, Jaroslav Dolezel4 and Nils Stein3, (1)LUKE & Thomas Wicker1, Martin Mascher2, Sebastian Beier3, Axel Himmelbach4, University of Helsinki, Helsinki, Finland, (2)BioNano Genomics, San Diego, Uwe Scholz3 and Nils Stein5, (1)University of Zurich, Zurich, Switzerland, CA, (3)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), (2)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, (4)Institute of Experimental Botany, Olomouc, Czech Gatersleben, Germany, (3)Institute of Plant Genetics and Crop Plant Research Republic (IPK), Gatersleben, Germany, (4)Institute of Plant Genetics & Crop Plant Research, Gatersleben, Germany, (5)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland, Germany W887: Triticeae 2

Call of the Wild: Exploiting Hordeum vulgare spp spontaneum for Barley Improvement W890: Triticeae 2 Broad Leaves, Narrow Leaves, or No Leaves at All - Genetic Dissection of Brian J Steffenson, University of Minnesota, St Paul, MN Barley Leaf Growth

Moritz Joest, Institute of Biochemistry and Biology, University of Potsdam, W888: Triticeae 2 Potsdam-Golm, Germany The Photoperiod Response Gene Ppd-H1 Affects Leaf Size and Phyllochron in Barley W891: UCSC Genome Browser - a home for all organisms 1 2 1 3 Laura Rossini , Benedikt Digel , Gabriele Verderio , Elahe Tavakol , UCSC Genome Browser - a Home for All Organisms Alessandro Tondelli4, Xu Xin5, Luigi Cattivelli4 and Maria von Korff2, (1)Universty of Milan - DiSAA, Milano, Italy, (2)Department of Robert Kuhn, UCalifornia Santa Cruz, Santa Cruz, CA Developmental Biology, Max Planck Institute for Plant Breeding Research, Cologne, Germany, (3)University of Milan - DiSAA, Milano, Italy, (4)CRA- GPG, Genomics Research Centre, Fiorenzuola d'Arda, Italy, (5)College of Life W892: UCSC Genome Browser - a home for all organisms Science, South-Central University for Nationalities, Wuhan, China UCSC Genome Browser - a Home for All Organisms

Pauline Fujita, University of California Santa Cruz, Santa Cruz, CA

203 W893: Weedy and Invasive Plant Genomics W897: Weedy and Invasive Plant Genomics The Genetics of Adaptation in an Invasive Plant (Ambrosia artemisiifolia) Divergence Population Genetics of De-Domestication in California Weedy Rice (Oryza sp) Kathryn A Hodgins, Monash University, Clayton, Australia and Loren H Rieseberg, University of British Columbia, Vancouver, BC, Canada Amy Lawton-Rauh, Clemson University, Clemson, SC

W894: Weedy and Invasive Plant Genomics W898: Weedy and Invasive Plant Genomics Polyploid Origins and the Genomics of Adaptation in the Worldwide Weed Looking at the Bright Side of an Invasive Species: Spartina alterniflora Capsella bursa-pastoris from an Abiotic Stress Tolerance Perspective

Gavin Douglas1, Adriana Salcedo1, Gesseca Gos1, Kim Steige2, Karl Holm2, J Venkata R Mangu1, Renesh Bedre1, Hana Zandkarimi2 and Niranjan Arvid Ågren1, Khaled Michel Hazzouri3, Wei Wang1, Adrian Platts4, Emily Baisakh1, (1)Louisiana State University Agricultural Center, Baton Rouge, LA, Josephs1, Robert J Williamson1, Barbara Neuffer5, Tanja Slotte6, John (2)Louisiana State university Agricultural Center, Baton Rouge, LA 7 2 1 Stinchcombe , Martin Lascoux and Stephen I Wright , (1)University of Toronto, Toronto, ON, Canada, (2)Uppsala University, Uppsala, Sweden, (3)New York University Abu Dhabi, Abu Dhabi, United Arab Emirates, W899: What are the bottlenecks in high-throughput phenotype research? (4)McGill University, Montreal, QC, Canada, (5)University of Osnabrück, Maize Seed Phenotyping By Machine Vision Osnabrück, Germany, (6)University of Stockholm, Stockholm, Sweden, (7)U of Toronto, Toronto, ON, Canada A Mark Settles, University of Florida, Gainesville, FL, Gainesville, FL

W895: Weedy and Invasive Plant Genomics W900: What are the bottlenecks in high-throughput phenotype research? Uncovering Differential Molecular Basis of Adaptive Diversity in Predictive Phenomics at Iowa State Echinochloa Transcriptomes Patrick S Schnable, Department of Agronomy, Iowa State University, Ames, Gyoungju Nah, Ji-Hoon Im, Jin-Won Kim and Do-Soon Kim, Seoul National IA University, Seoul, South Korea W901: What are the bottlenecks in high-throughput phenotype research? W896: Weedy and Invasive Plant Genomics Industrial Technology for Phenotyping Plants in the Field Genetics of Weediness in Sorghum halepense Matthew Thompson, Blue River Technology, Sunnyvale, CA Wenqian Kong, University of Georgia, Athens, GA

204 P0001: Bioenergy - Odd P0003: Bioenergy - Odd Improving Poplar for Biofuel Applications: Elucidating the Genetic Basis Assembly and Functional Annotation of the Salix purpurea L Chloroplast of Important Traits in Populus nigra through an Association Genetics Genome Approach in a Natural, Wide Mapping Population Craig H Carlson1, Haibao Tang2, Vivek Krishnakumar3, Agnes P Chan2, 2 4 5 6 1 1 2 Christopher D Town , Gerald A Tuskan , Jeremy Schmutz , Kerrie W Barry , Mike Allwright , Hazel Katherine Smith , Giovanni Emiliani , Adrienne 6 7 1 Payne1, Maud Viger1, Giorgio Alberti3, Alessandro Zaldei4, Davide Scaglione5, Erika A Lindquist , Stephen DiFazio and Lawrence Smart , (1)Cornell Simone Scalabrin6, Billy Valdes-Fragoso1, Franchesca Rouse1, Joao Paulo7, University, Geneva, NY, (2)J Craig Venter Institute, Rockville, MD, (3)J Craig Fred E van Eeuwijk7, Patricia Faivre Rampant8, Michele Morgante9 and Gail Venter Inst, Rockville, MD, (4)Oak Ridge National Laboratory, Oak Ridge, Taylor1, (1)University of Southampton, Southampton, United Kingdom, TN, (5)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (6)DOE (2)CNR-IVALSA, Trees and Timber Institute, Florence, Florence, Italy, Joint Genome Institute, Walnut Creek, CA, (7)West Virginia University, (3)Università Di Udine, Udine, Italy, (4)CNR - Institute for Biometeorology, Morgantown, WV Florence, Italy, (5)Parco Tecnologico Padano, Milan, Italy, (6)IGA Technology Services, Udine, Italy, (7)Biometris, Wageningen UR Plant Science Group, P0004: Bioenergy - Even Wageningen, Netherlands, (8)INRA Evry, Evry, France, (9)Università di Udine, Udine, Italy Genome-Wide Analysis of Oleosin Gene Family in Tree Species Heping Cao, USDA-ARS-Southern Regional Research Center, New Orleans, P0002: Bioenergy - Even LA Regulatory Networks Associated with Plant Cell Wall Deconstruction by Neurospora crassa P0005: Bioenergy - Odd N Louise Glass, University of California, Berkeley, CA Effect of Ganoderma Infection on the Composition of Acyl Lipids in Oil Palm Leaves

Abrizah Othman1, Arif Mohamad2, Salvatore Syahanim2, B Bahariah2, AS Idris3 and AS Mohd Din2, (1)Malaysian Palm Oil Board, Kajang, Selangor, Malaysia, (2)Advanced Biotechnology & Breeding Centre, Selangor, Malaysia, (3)Biological Research Division, Malaysian Palm Oil Board, Selangor, Malaysia

P0006: Bioenergy - Even P0010: Bioenergy - Even Genome-Wide Association Study of Oil Palm Mesocarp Oil Yield Content Improving Canopy Level Photosynthesis in Sugarcane and Its Application for Marker Selection Baskaran Kannan1, Aloisio Vilarinho1, Aleel Grennan2, Xiaoguo Zhang1, Ratna Chee-Keng Teh, Sime Darby Technology Centre Sdn Bhd, Serdang, Malaysia Karan1, Xiuhua Chen1, Rebecca A Slattery2, Stephen Long2, Don Ort2 and 1 Fredy Altpeter , (1)University of Florida - IFAS, Gainesville, FL, (2)University of Illinois, Urbana-Champaign, Urbana, IL P0007: Bioenergy - Odd

Discovery and Characterization of Polymorphic Sites in the Jatropha curcas Genome P0011: Bioenergy - Odd Growth and Maturation of Sugarcane SP80-3280 in Two Different Seasons Jaire A F Filho1, Eduardo Fernandes Formighieri2, Tatiana Barbosa Rosado3, Bruno Galvêas Laviola2 and Alexandre Alonso Alves2, (1)Embrapa Carolina G Lembke1, Savio S Ferreira1, Isabella B Valadão2, Hermann Agroenergy, Brasilia, Brazil, (2)Embrapa Agroenergy, Brasília, Brazil, Hoffmann2, Monalisa S Carneiro2 and Glaucia M Souza1, (1)Institute of (3)Universidade de Brasília, Brasília, Brazil Chemistry - University of São Paulo, São Paulo, Brazil, (2)Centro de Ciências Agrárias, Federal University of São Carlos, Araras, Brazil P0008: Bioenergy - Even Genome Assembly of an Amazonian Elaeis oleifera Genotype and P0012: Bioenergy - Even Comparative Analysis with Other Oil Palm Genomes Large Scale Analysis of Gene Expression Under Circadian Rhythms from Distinct Photoperiods Conditions in Sugarcane (Saccharum sp) Jaire A F Filho1, Francisco P Lobo2, Manoel Teixeira Souza Junior3, Alexandre Alonso Alves3 and Eduardo Fernandes Formighieri3, (1)Embrapa Leonardo Cardoso Alves, Michael T Lovci, Katlin B Massirer and Renato Agroenergy, Brasilia, Brazil, (2)Embrapa Informática Agropecuária, Campinas, Vicentini, University of Campinas - UNICAMP, Campinas, Brazil SP, Brazil, (3)Embrapa Agroenergy, Brasília, Brazil P0013: Bioenergy - Odd P0009: Bioenergy - Odd Diversity and Preliminary Association Analyses of 20 Camelina Spp Development of New Energy Cane Cultivars in Florida European Accessions Using SNP Genotyping Vanessa S Gordon, USDA-ARS Sugarcane Field Station, Canal Point, FL, Sanghyeob Lee, Sejong University, Seoul, South Korea Jack Comstock, USDA-ARS, Canal Point, FL, Hardev S Sandhu, UF-EREC, Belle Glade, FL, Robert Gilbert, University of Florida, Gainesville, FL, Nael El-Hout, BP Biofuels, Tampa, FL and Rebecca Arundale, BP Biofuels, Houston, TX

205 P0014: Bioenergy - Even P0018: Bioenergy - Even Improving Arundo donax Biomass through RNAi Induced Flowering Delay Phenotypic and Genotypic Variation for Biomass Yield Components in Half-Sib Families of Prairie Cordgrass Gaia Pigna1, Elia Moglia2, Sonia Giacometti2, Piero Morandini2, Scott C Lenaghan3 and C Neal Stewart Jr4, (1)University of Tennessee, Knoxville, TN, Jia Guo1, DK Lee1 and Patrick J Brown2, (1)University of Illinois Urbana- (2)University of Milan, Milano, Italy, (3)Center for Renewable Carbon, Champaign, Urbana, IL, (2)University of Illinois at Urbana-Champaign, University of Tennessee, Knoxville, TN, (4)Department of Plant Sciences, Urbana, IL University of Tennessee, Knoxville, TN P0019: Bioenergy - Odd P0015: Bioenergy - Odd Characterization of Candidate Overwintering Genes in Forage: Biofuel Functional Informatics of Cellulose Synthase Genes in Wheat Napiergrass (Pennisetum purpureum Schumach) Simerjeet Kaur, McGill University, Ste Anne de Bellevue, QC, Canada, Charlie Dowling, Texas A&M University, College Station, TX Kanwarpal Dhugga, Pioneer Hi-Bred International, Johnston, IA, Kulvinder Gill, Washington State University, Pullman, WA and Jaswinder Singh, McGill University, Ste Anne de Bellevue, QC, Canada P0020: Bioenergy - Even Rapid Low-Cost Method for Protoplast Isolation from Suspension Cultures of Switchgrass P0016: Bioenergy - Even 1 2 1 Yield and Forage Value of a Dual-Purpose bmr-12 Sorghum Hybrid A Grace Collins , Scott C Lenaghan and C Neal Stewart Jr , (1)Department of Plant Sciences, University of Tennessee, Knoxville, TN, (2)Center for Melinda Yerka1, Andrea Watson2, Galen Erickson2, John Toy1, Jeffrey Renewable Carbon, University of Tennessee, Knoxville, TN 1 1 Pedersen and Rob Mitchell , (1)USDA-ARS, Lincoln, NE, (2)University of Nebraska-Lincoln, Lincoln, NE P0021: Bioenergy - Odd

Panicum hallii: Tissue Culture & Transformation P0017: Bioenergy - Odd 1 1 1 2 Characterization of Biomass Traits in Grain Amaranth (Amaranthus spp) Joshua N Grant , Elizabeth M Dlugosz , Jason N Burris , Scott C Lenaghan and C Neal Stewart Jr1, (1)Department of Plant Sciences, University of Xinwang Wang, Texas A&M AgriLife Research Center, Texas A&M Tennessee, Knoxville, TN, (2)Center for Renewable Carbon, University of University, Dallas, TX and Wendy W Wang, Jasper High School, Plano, TX Tennessee, Knoxville, TN

P0022: Bioenergy - Even P0026: Bioenergy - Even Identification, Characterization, and Gene Expression Analysis of NB- Genome-Wide Association Analysis of Flowering Time in Miscanthus LRR Encoding Resistance Genes in the Bioenergy Plant Switchgrass sinensis (Panicum virgatum L) Lindsay V Clark1, Joe E Brummer2, Katarzyna Glowaca3, Megan Hall4, Taylor P Frazier1, Fuliang Xie2, Baohong Zhang3 and Bingyu Zhao1, Kweon Heo5, Junhua Peng6, Gerald van Koeverden7, Toshihiko Yamada8, Ji (1)Virginia Tech, Blacksburg, VA, (2)East Carolina University, Greenville, Hye Yoo5, Chang Yeon Yu5, Hua Zhao9, Stephen Long1 and Erik J Sacks10, NC, (3)East Carolina University, GReenville, NC (1)University of Illinois, Urbana-Champaign, Urbana, IL, (2)Colorado State University, Fort Collins, CO, (3)University of Illinois Urbana-Champaign, Urbana, IL, (4)UC Berkeley, Berkeley, CA, (5)Kangwon National University, P0023: Bioenergy - Odd Chuncheon, South Korea, (6)Huazhong Agricultural University, Wuhan, Population Genomic Variation Reveals Roles of History, Adaptation, and Hubei, China, (7)New Energy Farms, Leamington, ON, Canada, (8)Hokkaido Ploidy in Switchgrass University, Sapporo, Hokkaido, Japan, (9)Huazhong Agricultural University, Wuhan, China, (10)Energy Biosciences Institute, University of Illinois, Urbana, 1 2 1 3 Paul Grabowski , Geoffrey Morris , Michael Casler and Justin O Borevitz , IL (1)USDA-ARS, Madison, WI, (2)Kansas State University, Manhattan, KS,

(3)Australian National University, Canberra, Australia P0027: Bioenergy - Odd

Biotic and Abiotic Stress Tolerance of Phenylalanine Ammonia Lyase- P0024: Bioenergy - Even Suppressed Brachypodium Development of Reference Epigenomes and Transcriptomes in Switchgrass Cynthia L Cass1, Antoine Peraldi2, Patrick F Dowd3, Yaseen Mottiar4, 1 2 3 4 Vasudevan Ayyappan , Malay C Saha , Jyothi Thimmapuram , Ketaki Bhide Nicholas Santoro5, Steven D Karlen6, Yury V Bukhman6, Cliff E Foster5, Nick 1 and Venu (Kal) Kalavacharla , (1)Delaware State University, Dover, DE, Thrower5, Laura C Bruno2, Oleg V Moskvin6, Eric T Johnson3, Megan E (2)Samuel Robert Noble Foundation, Ardmore, OK, (3)Purdue University, Willhoit1, Megha Phutane1, John Ralph7, Shawn D Mansfield4, Paul Nicholson2 West Lafayette, IL, (4)Purdue University, West Lafayette, IN and John C Sedbrook1, (1)Illinois State University and GLBRC, Normal, IL, (2)John Innes Centre, Norwich, United Kingdom, (3)USDA-ARS, Peoria, IL, (4)University of British Columbia and GLBRC, Vancouver, BC, Canada, P0025: Bioenergy - Odd (5)DOE GLBRC,Michigan State University, East Lansing, MI, (6)GLBRC and Ablation of Transgenic Pollen in the Model Perennial Grass Brachypodium University of Wisconsin, Madison, WI, (7)GLBRC, University of Wisconsin, sylvaticum Wisconsin Energy Institute, Madison, WI Ray Collier1, Richard Bryan Hernandez2 and Roger Thilmony1, (1)USDA- ARS, Albany, CA, (2)Dept of Plant Sciences, University of California, Davis, CA

206 P0028: Bioenergy - Even P0031: Genome Technology: Sequencing - Odd Dissecting the Genomic Architectures of Phenotypic Traits in the Energy Advanced Technologies in Next-Generation Sequencing Platforms and Grass Miscanthus Sample Preparation for Whole Genome, Transcriptome and Metagenomic Sequencing Gancho T Slavov1, Michael Squance2, Chris Davey2, Paul R H Robson1, Elaine Jensen1, Kerrie Farrar1, Xue-Feng Ma3, Lin Huang4, Timothy Swaller3, Chris Wright1, Alvaro Hernandez1, Mark Band2 and Mark A Mikel3, (1)Roy J John C Clifton-Brown1 and Iain Donnison1, (1)Aberystwyth University, Carver Biotechnology Center, Urbana, IL, (2)Roy J Carver Biotechnology Aberystwyth, United Kingdom, (2)IBERS, Aberystwyth, United Kingdom, Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA, (3)Ceres Inc, Thousand Oaks, CA, (4)IBERS, Aberystwyth University, Urbana, IL, (3)University of Illinois at Urbana-Champaign, Urbana, IL Aberystwyth, United Kingdom P0032: Genome Technology: Sequencing - Even P0029: Genome Technology: Sequencing - Odd High Quality Short Read Assembly of B10 Cucumber Line Genome

Flexible Method for Targeted Transcript Depletion from RNA-Seq 1 2 2 Libraries: Mouse, Rat, Drosophila and Arabidopsis Pawe! Osipowski , Michal Krzysztof Wojcieszek , Magdalena Pawelkowicz , Kouhei Yagi1, Wojciech Plader2 and Zbigniew Przybecki2, (1)Warsaw Steven R Kain, NuGEN Technologies, San Carlos, CA University of Life Sciences - SGGW, Warsaw, Poland, (2)Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, Warsaw, Poland P0030: Genome Technology: Sequencing - Even

Impact of DNA Quality on PacBio RSII Read Lengths P0033: Genome Technology: Sequencing - Odd 1 2 1 1 2 Robert Bogden , Steve Kujawa , Amy Mraz , Travis Ruff , Joan Wilson and BAC Sudoku Sequencing and Closing Repeat Rich BAC Clone Jon Wittendorp1, (1)Amplicon Express, Inc, Pullman, WA, (2)Pacific Biosciences, Menlo Park, CA Curtis Knox, David Mead, Svetlana Jasinovica, Erin Ferguson, Megan Niebauer, Amanda Krerowicz, Scott Monsma and Michael J Lodes, Lucigen Corporation, Middleton, WI

P0034: Genome Technology: Sequencing - Even P0039: Genome Technology: High-throughput Methods - Odd Making Sense of Transcriptome Assemblies What is required to close the gap between greenhouse and field phenotyping? Marta Matvienko1, Joseph G Dubrovsky2, Gustavo Rodriguez-Alonso2 and Svetlana Shishkova3, (1)CLC bio, a QIAGEN Company, Davis, CA, Grégoire Hummel, Phenospex, Heerlen, Netherlands (2)Instituto de Biotecnología, UNAM, Cuernavaca, Mexico, (3)Instituto de Biotecnología, UNAM, Cuernavaca, Morelos, Mexico P0040: Genome Technology: High-throughput Methods - Even

Amplicon Based 16S Ribosomal RNA Sequencing and Genus Identification P0035: Genome Technology: Sequencing - Odd - Mixed Species Metagenomics Closing and Finishing Genomes with Long Span NGS Reads Masoud Toloue1, Jan Risinger1, Lindsey Renken1, Josh Hill2, Noushin David Mead, Michael J Lodes, Svetlana Jasinovica, Erin Ferguson, Amanda Ghaffari3, Richard P Metz3 and Charles D Johnson4, (1)Bioo Scientific, Austin, Krerowicz, Brendan Keough, Megan Niebauer and Scott Monsma, Lucigen TX, (2)AgriLife Genomics and Bioinformatics Service, Texas A&M Corporation, Middleton, WI University, College Station, TX, (3)AgriLife Genomics and Bioinformatics Services, College Station, TX, (4)Texas A&M AgriLife, College Station, TX P0036: Genome Technology: High-throughput Methods - Even Never considered: affordable solutions for ultra-high-throughput P0041: Genome Technology: High-throughput Methods - Odd phenotyping Biology, Bioinformatics, Genetics and Genomic Breeding Bas van Eerdt, WPS, De Lier, Netherlands Nikkie van Bers, Genetwister Technologies, Wageningen, Netherlands

P0037: Genome Technology: High-throughput Methods - Odd P0042: Genome Technology: High-throughput Methods - Even Plant Metabolic Engineering: Opportunities for Plant Phenotyping Detection, Characterization, and Biological Analysis of Long Tandem Repeats Using Nanochannel Technology Stevens M Brumbley, University of North Texas, Denton, TX 1 1 2 1 1 Saki Chan , Weiping Wang , Sander A Peters , Alex Hastie and Han Cao , (1)BioNano Genomics, San Diego, CA, (2)Plant Research International, P0038: Genome Technology: High-throughput Methods - Even Wageningen, Netherlands Agriculture in the digital era Xavier Sirault, CSIRO Plant Industry - High Resolution Plant Phenomics Centre, Canberra, Australia

207 P0043: Genome Technology: High-throughput Methods - Odd P0047: Genome Technology: High-throughput Methods - Odd Genome and Metagenome Sequencing: Using the Human Methyl Binding SNP Arrays in Crop Plants - Genotyping Services and Optimized Arrays Domain to Partition Genomic DNA Derived from Plant Tissues at TraitGenetics (Angiospermae) Jana Lemm, Joerg Plieske, Andreas Polley and Martin W Ganal, TraitGenetics Erbay Yigit1, David Hernandez2, Joshua Trujillo2, Eileen T Dimalanta1 and GmbH, Stadt Seeland OT Gatersleben, Germany 2 Donovan Bailey , (1)New England Biolabs, Ipswich, MA, (2)New Mexico State University, Las Cruces, NM P0048: Genome Technology: High-throughput Methods - Even

Efficiency Genome Assembly with the Hi-Q Enzyme on an Ion Torrent P0044: Genome Technology: High-throughput Methods - Even PGM Sequencing Platform Chromosome-Scale Scaffolding of de novo Genome Assemblies Using Hi-C Artur Luiz Costa Silva, Universidade Federal do Pará, Belém, Brazil Joshua N Burton, University of Washington - Department of Genome Sciences, Seattle, WA P0049: Genome Technology: High-throughput Methods - Odd

Single Molecule, Real-Time Sequencing of Full-Length cDNA Transcripts P0045: Genome Technology: High-throughput Methods - Odd Uncovers Novel Alternatively Spliced Isoforms High PCR Efficiency Using FASTMAG DNA Extraction Kit Tyson A Clark, Ting Hon and Elizabeth Tseng, Pacific Biosciences, Menlo Pradheep Chhalliyil, Genetic-ID, Genetic-ID Inc, Iowa and Bernd Schoel, Park, CA Genetic ID NA, Inc, Fairfield, IA P0050: Genome Technology: High-throughput Methods - Even P0046: Genome Technology: High-throughput Methods - Even Increasing Sensitivity of Next Generation Sequencing-Based Multi-Targeted Community Profiling: Leveraging the Fluidigm Access Transcriptome Profiling By Selectively Depleting Abundant RNAs in Array and Illumina MiSeq for Metagenomic Sequencing - Microorganisms Animal and Plant Samples

Chris Wright1, Tatsiana Akraiko2, Alvaro Hernandez1 and Mark Band2, Daniela B Munafo, Bradley W Langhorst, Mehul Ganatra, Christopher H (1)Roy J Carver Biotechnology Center, Urbana, IL, (2)Roy J Carver Taron, Fiona J Stewart, Eileen T Dimalanta and Theodore B Davis, New Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, IL England Biolabs, Ipswich, MA 61801, USA, Urbana, IL

P0051: Genome Technology: High-throughput Methods - Odd P0056: Genome Technology: High-throughput Methods - Even New Developments in the NCBI Eukaryotic Genome Annotation Pipeline iYacho: Development of Digital Field Note Application for Rapid and Accurate Plant Phenotyping Francoise Thibaud-Nissen, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD Takanari Tanabata, RIKEN Center for Sustainable Resource Science, Tsukuba, Ibaraki, Japan, Tomomori Kataoka, NARO Kyushu Okinawa Agricultural Research Center, Fukuoka, Japan, Asako Kobayashi, Fukui P0052: Genome Technology: High-throughput Methods - Even Agricultural Experiment Station, Fukui, Japan, Kiyosumi Hori, National DArT™ and DArTseq™ Genome Profiling for Breeding, Pre-Breeding Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan and Sachiko and Population Genetics Applications Isobe, Kazusa DNA Research Institute, Kisarazu, Japan

Jason Carling, Katarzyna Heller-Uszynska, Damian Jaccoud, Adriane Machado, Colleen Hopper, Ling Xia, Cina Vippin, Vanessa Caig, Grzegorz P0057: Genome Technology: High-throughput Methods - Odd Uszynski and Andrzej Kilian, Diversity Arrays Technology, Bruce, Australia Phenotyping Wheat Root Architecture in 2D and 3D

Jonathan Atkinson1, Luzie U Wingen2, Marcus Griffiths1, Michael P Pound1, P0053: Genome Technology: High-throughput Methods - Odd Shaunagh Keating1, Reshmi Gaju1, Larry M York1, Jacques Le Gouis3, Simon KeyPoint® Mutation Breeding: A Shortcut to Improved Crops Griffiths2, John Foulkes1, Darren M Wells1, Malcolm J Bennett1, Julie King1 and Ian P King1, (1)The University of Nottingham, Leicestershire, United Anker Sørensen, KeyGene, Wageningen, Netherlands Kingdom, (2)John Innes Centre, Norwich, United Kingdom, (3)INRA GDEC, clermont ferrand, France P0054: Genome Technology: High-throughput Methods - Even Automated Analysis of Disease Symptoms Using LemnaTec ScanalyzerHTS P0058: Genome Technology: High-throughput Methods - Even Brachypodium distachyon Bd21-3 Tilling By Sequencing Marcus Jansen and Tino Dornbusch, LemnaTec GmbH, Aachen, Germany 1 2 1 3 YIng Rong , Indrajit Kumar , Kazuhiro Kikuchi and Thomas P Brutnell , (1)Donald Danforth Plant Science Center, St Louis, MO, (2)Donald Danforth P0055: Genome Technology: High-throughput Methods - Odd Plant Science Center, Saint Louis, MO, (3)Donald Danforth Plant Science Sequencing Plant Genomes by Combining Illumina and PacBio Center, St Louis, MO Technologies

Chengzhi Liang, Institute of Genetics and Developmental Biology, CAS, Beijing, China

208 P0059: Genome Technology: High-throughput Methods - Odd P0062: Genome Technology: High-throughput Methods - Even Rapid Method for Soy DNA Extraction and Genotyping Differential Methylation of Genomic Regions in Juvenile and Adult Leaves Assessed By the Application of the MethylMnM Algorithm in the Non- Chad Collier, Bioline USA, Taunton, MA Model Species Eucalyptus globulus Labill

Rodrigo Jorge Hasbún1, Carolina Iturra2, Maria F Beltran G3, Macarena P0060: Genome Technology: High-throughput Methods - Even Arellano2, Paulina Rivas2, Marcela Stuardo2, Soraya Bravo4, Alexis Salas2, A Bayesian Model for Detection of High-Order Interactions Among Boris Rebolledo5 and Luis Valledor6, (1)University of Concepción, Chile, Genetic Variants in Genome-Wide Association Studies and Its Application Concepcion, Chile, (2)Universidad de Concepcion, Concepcion, Chile, on Soybean Oil/Protein Traits (3)Faculty of Biological Sciences, University of Concepción, Concepcion, Chile, (4)Universidad Andrés Bello, Talcahuano, Chile, (5)The Pennsylvania 1 2 2 2 Juexin Wang , Jason Vander Heiden , Namita Gupta , Mate Nagy , Trupti State University, State College, PA, (6)Universidad de Oviedo, Oviedo, Spain Joshi3, Babu Valliyodan4, Haiying Shi5, Yanchun Liang1, Henry T Nguyen3, 6 3 Jing Zhang and Dong Xu , (1)Jilin University, Changchun, China, (2)Yale University, New Haven, CT, (3)University of Missouri, Columbia, MO, P0063: Genome Technology: High-throughput Methods - Odd (4)University of Missouri & National Center for Soybean Biotechnology, Viral Metagenomic Analysis of Sweet Potato Using High-Throughput Deep Columbia, MO, (5)UniversityofMissouri, Columbia, MO, (6)Georgia State Sequencing University, Atlanta, GA Thulile F Nhlapo, Agricultural Research Council/University of the Witwatersrand, Pretoria, South Africa P0061: Genome Technology: High-throughput Methods - Odd

Quantitative Digital and Real Time PCR for GM Alfalfa P0064: Genome Technology: High-throughput Methods - Even Bernd Schoel, Genetic ID NA, Inc, Fairfield, IA and Pradheep Chhalliyil, Rape and Vegetable Seed Extractions using sbeadex on the oKtopure Genetic-ID, Genetic-ID Inc, Iowa Dietrich Koester and Heiko Hauser, LGC, Hoddesdon, United Kingdom

P0065: Genome Technology: High-throughput Methods - Odd P0068: Genome Technology: Large Insert Libraries - Even The Combination of Target Enrichment and Genome Skimming (Hyb- Best Practices for Whole Genome de novo Sequencing with Long-Read Seq) for Phylogenetic Reconstruction of South African Oxalis SMRT Sequencing (Oxalidaceae) Kristi Spittle Kim1, Paul Peluso2, Heather Locovare2, Nick Sisneros2, David Roswitha Schmickl1, Aaron Liston2, Kenneth Oberlander1, Kevin Weitemier2, Rank2, Marty Ray Badgett2 and Jenny Gu2, (1)Pacific Biosciences, Menlo park, Vojt!ch Zeisek1, Shannon Straub3, Richard Cronn4, Léanne L Dreyer5 and Jan CA, (2)Pacific Biosciences, Menlo Park, CA 1 Suda , (1)Czech Academy of Sciences, Pruhonice, Czech Republic, (2)Oregon State University, Corvallis, OR, (3)Hobart and William Smith Colleges, Geneva, NY, (4)USDA Forest Service Pacific Northwest Research Station, P0069: Genome Technology: Large Insert Libraries - Odd Corvallis, OR, (5)Stellenbosch University, Matieland, South Africa Unbiased BAC Libraries Enable Genome Gap Closing and Functional Studying in the Plants and Other Species P0066: Genome Technology: High-throughput Methods - Even Rosa Ye1, Md Nurul Islam2, Matt Lamprecht2, Carolyn Smith2, Cynthia Chen2 2 Automated RNA Purification from Salmonid Organs Using a Novel and Cheng-Cang Charles Wu , (1)Intact Genomics, Inc, St Louis, MO, Paramagnetic Particle Technology (2)Intact Genomics, Inc, St Louis, MO

Kevin Kershner1, Doug Wieczorek1, Laurence Delauriere2, Eric B Vincent1 and Trista Schagat1, (1)Promega Corp, Madison, WI, (2)Promega Corporation, P0070: Genome Technology: Large Insert Libraries - Even Charbonnieres, France Low Coverage BAC Libraries and BAC NGS Sequencing: A Powerful Tool for Comparative Genomics of Complex Plant Genomes P0067: Genome Technology: High-throughput Methods - Odd Genséric Beydon1, Nathalie Rodde1, Audrey Courtial1, Elisa Prat1, Joelle Fourment1, Nadine Gautier1, Nadege Arnal1, Justine Mas1, William Marande1, High-Throughput Direct DNA Analysis from Intact Fish Eggs By Real- 1 1 1 2 Time PCR Stephane Cauet , Arnaud Bellec , Sonia Vautrin , Clémentine Vitte , Johann Joets2 and Hélène Bergès1, (1)INRA - CNRGV, Castanet Tolosan, France, Yan Wang, Bio-Rad Laboratories, Hercules, CA (2)INRA/CNRS/Univ Paris-Sud/AgroParisTech, Gif-sur-Yvette, France

209 P0071: Genome Technology: Large Insert Libraries - Odd P0074: Genome Technology: Large Insert Libraries - Even Closing and Finishing the Mitochondrial and Chloroplast Genomes of Begin at the Beginning: A BAC-End View of the Passion Fruit (Passiflora) Sorghum Male-Sterile a1 Cytoplasm Using Long Span NGS Read Genome Technology Carla de Freitas Munhoz1, Anselmo Azevedo Santos1, Helen Alves Penha1, Robert Richard Klein1, Scott Monsma2, Brendan Keough2, David Mead2, Ian Arnaud Bellec2, Hélène Bergès2 and Maria Lucia Carneiro Vieira1, Small3, Emma Mace4 and David R Jordan5, (1)USDA-ARS, College Station, (1)University of São Paulo, Piracicaba, Brazil, (2)INRA - CNRGV, Castanet TX, (2)Lucigen Corporation, Middleton, WI, (3)The University of Western Tolosan, France Australia, Crawley, WA, Australia, (4)Queensland Government, Warwick, Australia, (5)University of Queensland, Warwick, Australia P0075: Genome Technology: Other Genome Methodology - Odd

National Resources for Computationally Intensive Genomics P0072: Genome Technology: Large Insert Libraries - Even Analysis of Illumina's Nextera Long Mate Pair Data, and Its Effects on Carrie L Ganote and Barbara L Hallock, Indiana University, Bloomington, IN Sequence Assembly Bernardo Clavijo, Gonzalo Garcia and Sarah Ayling, The Genome Analysis P0076: Genome Technology: Other Genome Methodology- Even Centre, Norwich, United Kingdom Sequencing the 5th Base of DNA, 5-Methylcytosine

Cassie A Schumacher, Swift Biosciences Inc, Ann Arbor, MI P0073: Genome Technology: Large Insert Libraries - Odd

European Cuttlefish Whole Transcriptome Sequencing: A Single-Molecule P0077: Genome Technology: Other Genome Methodology - Odd Full Length Transcript Survey with Iso-Seq Method de novo Assembly of Complex Genomes Using Extremely Long Single- Kim C Worley1, Jeffrey Rogers1, Yi Han1, Min Wang1, Nathan Tublitz2, Molecule Imaging Technology Graziano Fiorito3, Cheryl Heiner4, Tyson A Clark4, Elizabeth Tseng4, 1 1 1 2 3 Muthuswamy Raveendran1, Vanessa Vee1, Donna M Muzny1 and Richard A Weiping Wang , Han Cao , Ernest Lam , Haifang Wu , Jiang Xu and Jie 4 Gibbs1, (1)Baylor College of Medicine, Houston, TX, (2)University of Oregon, Wu , (1)BioNano Genomics, San Diego, CA, (2)Genergy Biotechnology Eugene, OR, (3)Stazione Zoologica Anton Dohrn, Napoli, Italy, (4)Pacific (Shanghai) Co Ltd, Shanghai, China, (3)Institute of Medicinal Plant Biosciences, Menlo Park, CA Development, CAMS & PUMC, Beijing, China, (4)Bee Research Institute of CAAS, Beijing, China

P0078: Genome Technology: Other Genome Methodology- Even P0082: Genome Technology: Other Genome Methodology- Even Cell Sorting on a Microfluidic Chip Recombinase-Mediated Cassette Exchange (RMCE) for Gene-Stacking in Saccharomyces cerevisiae Roland Kilper, aura optik gmbh, Jena, Germany 1 2 2 Sara K Hotton , Meridith Cook and James Thomson , (1)University of California - Davis, Albany, CA, (2)USDA-WRRC, Albany, CA P0079: Genome Technology: Other Genome Methodology - Odd

Veterinary Pathogen Detection and Meat Speciation using qKASP, a Novel Method for Real-Time DNA Detection P0083: Genome Technology: Other Genome Methodology - Odd

1 1 1 2 Development of the Maxwell® 16 Lev Plant DNA Kit, and Its Application Rebecca Howard , Alvin Lee , Klaus Hentrich , Wim van Haeringen , Ynte H to Plant Leaf Tissues Schukken3 and John Holme1, (1)LGC Genomics, Hoddesdon, United Kingdom, (2)Dr Van Haeringen Laboratorium BV, Wageningen, Netherlands, (3)GD Chris Moreland, Promega, Madison, WI Animal Health, Deventer, Netherlands P0084: Genome Technology: Other Genome Methodology- Even P0080: Genome Technology: Other Genome Methodology- Even PCR-Based SNP Genotyping Assay Development for Plant and Animal Rapid and qPCR Ready DNA Isolation from Environmental and Human Genomic Research Bodily Fluid Samples using Magnetic Bead System Cassie Keppel and Luke Linz, Douglas Scientific, Alexandria, MN Won-Sik KIM, Norgen Biotek Corporation, Thorold, ON, Canada P0085: Genome Technology: Other Genome Methodology - Odd P0081: Genome Technology: Other Genome Methodology - Odd Comparison of GWS Methods for the Selection of Higher Individuals Genotyping-in-Thousands By Sequencing (GT-seq): A Cost Effective SNP Leonardo Lopes Bhering1, Leonardo de Azevedo Peixoto1, Vinicius Genotyping Method Based on Custom Amplicon Sequencing - Rainbow 1 1 2 Trout Junqueira , Cosme Damião Cruz and Bruno Galvêas Laviola , (1)Universidade Federal de Viçosa, Viçosa, Brazil, (2)Embrapa Agroenergy, Brasília, Brazil Nathan Campbell, Shawn Narum and Stephanie Harmon, Columbia River Inter-Tribal Fish Commission, Hagerman, ID P0086: Genome Technology: Other Genome Methodology- Even

Representative DNA Amplification from Single Plant Chromosomes Petr Capal, Nicolas Blavet, Jan Vrana, Marie Kubalakova and Jaroslav Dolezel, Institute of Experimental Botany, Olomouc, Czech Republic

210 P0087: Genome Technology: Other Genome Methodology - Odd P0091: Genome Technology: Other Genome Methodology - Odd Molecular Evolution for the Development of an Inhibitor-Resistant DNA A Small Serine Recombination System CinH for Precise Excision of Plastid Polymerase for Improved Target Amplification and Quantification of DNA Crude Samples with Real-Time PCR MIN Shao, University of California, Davis, Albany, CA and James Thomson, Charles Joseph, Kapa Biosystems, Wilmington, MA USDA-WRRC, Albany, CA

P0088: Genome Technology: Other Genome Methodology- Even P0092: Genome Technology: Other Genome Methodology- Even Targeting of Meiotic Recombination Indirect Monitoring of Engineered Nuclease Activity for Target Gene Modification in Petunia Giacomo Bastianelli, MEIOGENIX, Paris, France and Alain Nicolas, Institut Curie, Paris, France Geung-Joo Lee1, Sung Jin Chung1 and Sangsu Bae2, (1)Chungnam National University, Daejeon, South Korea, (2)Seoul National Univeristy, Seoul, South Korea P0089: Genome Technology: Other Genome Methodology - Odd

A DNA-Based Biosensor for Wine Authenticity P0093: Genome Technology: Other Genome Methodology - Odd Luis Moreira1, Helena Gonçalves1, Maria Leonor Pereira2, Pedro Jorge3, José 3 2 Gene Targeting of 5-Enolpyruvylshikimate-3-phosphate Synthase and RA Fernandes and Paula Filomena Martins-Lopes , (1)University of Trás- Acetolactate Synthase for Transgene-Free Herbicide Resistance in Cassava os-Montes and Alto Douro, Vila Real, Portugal, (2)IBB-CGB, University of Trás-os-Montes and Alto Douro, Vila Real, Portugal, (3)INESC-TEC, Porto, Aaron Hummel1, Raj D Chauhan2, Anupama Vijayaraghavan2, Andrew PA, Portugal Mutka2, Nigel J Taylor2, Rebecca Bart2 and Dan Voytas1, (1)University of Minnesota, St Paul, MN, (2)Donald Danforth Plant Science Center, St Louis, MO P0090: Genome Technology: Other Genome Methodology- Even

Male Apomixis: An Alternative Strategy to Synthetically Engineer Clonal Seed Formation in Plants P0094: Genome Technology: Other Genome Methodology- Even TALENs and CRISPR/Cas9 System for Targeted Genome Modification in Nico De Storme, Ghent University, Gent, Belgium Maize

Chao Feng, Jing Yuan and Fangpu Han, Chinese Academy of Sciences, Beijing, China

P0095: Genome Technology: Other Genome Methodology - Odd P0098: Marker Systems Diversity: SSR - Even Inclusion of Dominance and GxE Effects in Genomic Selection Model to Segregation Analysis of Microsatellite (SSR) Markers in Sugarcane Improves Predictive Ability Polyploids Joao F Rodrigues Guimaraes1, Janeo Almeida Filho1, Rodrigo Furtado dos Yong-Bao Pan1, Xin Lu2, Hui Zhou3, Charles Y Chen4, Jianrong Zhu2, Santos1, Marcio F Resende Jr1, Patricio R Munoz2 and Matias Kirst1, Pinghua Chen5, Qing Cai2 and Ru-Kai Chen5, (1)USDA-ARS, MSA, SRU, (1)University of Florida, Gainesville, FL, (2)University of Florida, Agronomy Houma, LA 70360, USA, Houma, LA, (2)Yunnan Sugarcane Research Department, Gainesville, FL Institute, Yunnan Academy of Agricultural Sciences, Kaiyuan, Yunnan, China, (3)Sugarcane Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, Guangxi, China, (4)Department of Crop, Soil and Environmental P0096: Genome Technology: Other Genome Methodology- Even Sciences, Auburn University, Auburn, AL, (5)Sugarcane Research Institute, Purification of Amplifiable Nucleic Acid from Oil Palm and Rice Leaves Fujian Agriculture and Forestry University, Fuzhou, Fujian, China and Seeds Using a Small Benchtop Automated Instrument Trista Schagat, Promega Corp, Madison, WI P0099: Marker Systems Diversity: SSR - Odd Sequence Alignment Status and Amplicon Size Difference Affecting EST- SSR Primer Performance and Polymorphism P0097: Genome Technology: Other Genome Methodology - Odd Using Spinach to Compare Technologies for Whole Genome Assemblies Chunxian Chen, USDA-ARS, SEFNRL, Byron, GA

1 1 2 2 Allen Van Deynze , Hamid Ashrafi , Luke Hickey , Paul Peluso , David Rank2, Jason Chin2, Nicole Rapicavoli3, James Drake2, Tyler Garvin4 and P0100: Marker Systems Diversity: SSR - Even 5 Michael Schatz , (1)Seed Biotechnology Center, University of California, Comparison of the Sequence Simple Repeats (SSR) Fragments Between Davis, CA, (2)Pacific Biosciences, Menlo Park, CA, (3)Pacific Biosciences, the Genetic Maps and the Physical Map in Chickpea (Cicer arietinum) Menlo park, CA, (4)Cold Spring Harbor Laboratory, NY 11724, NY, (5)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY Aladdin Hamwieh, ICARDA, Cairo, Egypt, Ayed Al Abdallat, International Center for Agricultural Research in the Dry Areas, Amman, Jordan and Al- Samman Al-Samman, AGERI, ARC Cairo, Cairo, Egypt

211 P0101: Marker Systems Diversity: SSR - Odd P0105: Marker Systems Diversity: SNP - Odd Development of a Database (BARCPvSSR_10) Containing Candidate Cost-Effective Implementation of Genomic Selection By Subsetting SNP Polymorphic Simple Sequence Repeat (SSR) Markers in Common Bean Markers Qijian Song, USDA-ARS- BARC-west, Beltsville, MD, Gaofeng Jia, USDA- Luiz A Peternelli, Federal University of Vicosa, Vicosa, MG, Brazil and ARS, BARC, Beltsville, MD, Josiane Isabela da Silva Rodrigues, Brazilian Guilherme J M Rosa, University of Wisconsin, Madison, WI Agricultural Research Corporation, PB, Brazil and Perry Cregan, USDA-ARS, Soybean Genomics and Improvement Lab, Beltsville, MD P0106: Marker Systems Diversity: SNP - Even

Keygene® SNPSelect: Genotyping up to 8 Million SNP Datapoints per P0102: Marker Systems Diversity: SSR - Even Sequencing Run Both GBS- and SSR Marker-Based QTL Mapping of Downy Mildew Resistance in Cucumber Michiel van Eijk, KeyGene, Wageningen, Netherlands

Sanghyeob Lee, Sejong University, Seoul, South Korea P0107: Marker Systems Diversity: SNP - Odd

Cost Effective Resequencing for Association Genetics in Ryegrass Utilising P0103: Marker Systems Diversity: SSR - Odd a Modified Illumina NGS Work-Flow

High-Throughput SSR Marker Development in Korean Pear Using Next- 1 1 1 1 Generation Sequencing Hiroshi Shinozuka , Luke Pembleton , Maiko Shinozuka , Bec Baillie , Michelle Drayton1, Noel O I Cogan1, Colin A Denver2, Clint Trapp2, Chad Youngjae Oh1, Seolah Kim1, Hyunsuk Shin1, Jungyeon Won1, Sewon Oh1, Collier2 and Lopeti T Lavulo2, (1)Department of Environment and Primary Yoon-Kyeong Kim2 and Daeil Kim1, (1)Chungbuk National University, Industries, Bundoora, Australia, (2)Bioline, Alexandria, Australia Cheongju, South Korea, (2)National Institute of Horticultural & Herbal Science, Naju, South Korea P0108: Marker Systems Diversity: SNP - Even

Genetic Diversity, Population Structure and Linkage Disequilibrium in P0104: Marker Systems Diversity: SSR - Even Brassica napus l Germplasm and Its Implication for Association Mapping Development and Characterization of Expressed SSRs in Olive (Olea europaea L) Mukhlesur Rahman, North Dakota State University, Fargo, ND

Alenka Baruca Arbeiter1, Jernej Jakse2 and Dunja Bandelj1, (1)University of Primorska, Koper, Slovenia, (2)University of Ljubljana, Biotechnical Faculty, Agronomy Department, Ljubljana, Slovenia

P0109: Marker Systems Diversity: SNP - Odd P0112: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Application of NGS-Generated SNP Data to Complex Crops Studies: The Cellular Processes and Regulatory Networks - Even Example of Musa spp Metabolic Fingerprinting of Microorganisms Presenting in Fermentative Process of Ethanol Yann Hueber1, Julie Sardos1, Eva H"ibová2, Ines Van den houwe3, Nicolas Roux1 and Mathieu Rouard1, (1)Bioversity International, Montpellier, France, Mariana Souza Silva, Ilara G Bundzinsk, Thais Regiani, Fabrício E Moraes (2)Institute of Experimental Botany, Prague, Czech Republic, (3)Bioversity and Carlos A Labate, ESALQ/USP, Piracicaba, Brazil International Transit Center, Heverlee, Belgium P0113: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0110: Marker Systems Diversity: SNP - Even Cellular Processes and Regulatory Networks - Odd Genotyping-By-Sequencing (GBS) Using a Semiconductor Sequencing The Effect of Gallic Acid on Gene Expression in Gastric Adenocarcinoma Platform Heather J Axen1, Stephanie Liptak1, Rhiannon Morrissey1, Kari Clifton1, Shan Wang, Department of Agronomy, Kansas State Unversity, Manhattan, Songhua Zhang2, Steven Moss3 and John David Swanson1, (1)Salve Regina KS, Cai Jin, Agronomy Department, Kansas State University, Manhattan, KS, University, Newport, RI, (2)Brown University, Providence, RI, (3)Rhode Yue Lu, Kansas State University Agronomy Department, Manhattan, KS and Island Hospital, Providence, RI Guihua Bai, USDA/ARS, Manhattan, KS P0114: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0111: Marker Systems Diversity: SNP - Odd Cellular Processes and Regulatory Networks - Even A Comparative Evaluation of SNP Genotyping Assay Chemistries in Ex Vivo Expression of Genes Related to Innate and Adaptive Immunity in Atlantic Salmon Cow, Sheep and Goat Neutrophils Ciaran Meghen1, Marc Farrelly2, Janika Higgins2, David Vaske1 and Stacie H Mulumebet Worku, North Carolina A&T State University, Greensboro, NC 1 Eliades-Becker , (1)IdentiGEN, Lawrence, KS, (2)IdentiGEN Ltd, Dublin, Ireland

212 P0115: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0118: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Cellular Processes and Regulatory Networks - Even Expression Comparison of Phenylalanine Ammonia-lyase Gene in Scab Developing Germline Markers for a Species That Undergoes Programmed Resistant and Susceptible Wheat Cultivars in response to Fusarium Genome Rearrangement graminearum infection Sarah E Whelan and Jeramiah J Smith, University of Kentucky, Lexington, Mona Sorahi Nobar1, Vahid Niknam1, Samira Imani2, Hassan Ebrahimzadeh1 KY 2 and Hassan Soltanloo , (1)University of Tehran, Tehran, Iran, (2)University of Agricultural Sciences and Natural Resources, Gorgan, Iran P0119: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd P0116: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): MicroRNA Expression Profiling in Tonsils of Calves Challenged with a Cellular Processes and Regulatory Networks - Even Laboratory Strain or Field Isolates of Bovine Respiratory Syncytial Virus Connecting the Transcriptome, microRNAs, and the Proteome in Tail Regeneration of the Green Anole Lizard, Anolis carolinensis Eduardo Casas, Guohong Cai, Jodi L McGill, Mitchell V Palmer, Robert E Briggs and Randy E Sacco, NADC-ARS-USDA, Ames, IA 1 1 2 Elizabeth D Hutchins , Walter L Eckalbar , Ken Pendarvis , Fiona McCarthy2, Douglas F Lake1 and Kenro Kusumi1, (1)Arizona State University, Tempe, AZ, (2)University of Arizona, Tucson, AZ P0120: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even

Small RNA Expression in Lamprey Embryogenesis During Programmed P0117: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Genome Rearrangement Cellular Processes and Regulatory Networks - Odd 1 2 1 Human-Specific Changes in the Biology of Siglecs and Their Relevance for Lisa M Taylor , Joseph R Herdy and Jeramiah J Smith , (1)University of Host–Microbe Interactions Kentucky, Lexington, KY, (2)Salk Institute for Biological Studies, La Jolla, CA Flavio Schwarz, University of California, San Diego, La Jolla, CA

P0121: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0125: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Cellular Processes and Regulatory Networks - Odd Transcriptional Profiling of Post-Hatch Breast Muscle Development in Targeting microRNAs for Destruction in Crop Plants By Short Tandem Legacy and Modern Broiler Chickens (Gallus gallus) Target Mimic (STTM)

Richard VN Davis1, Susan J Lamont2, Max F Rothschild2, Michael E Persia3, Sachin Teotia, Ting Peng, Haiping Liu, Mengmeng Qiao, Lina Shi and Chris M Ashwell4 and Carl J Schmidt1, (1)University of Delaware, Newark, Guiliang Tang, Michigan Technological University, Houghton, MI DE, (2)Iowa State University, Ames, IA, (3)Virginia Tech, Blacksburg, VA, (4)North Carolina State University, Raleigh, NC P0126: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even P0122: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Evolution of C4 Photosynthesis: The Role of Low CO2 Environment Cellular Processes and Regulatory Networks - Even Characterization of Somatically-Eliminated Genes in the Sea Lamprey Xinguang Zhu, CAS-MPG Partner Institute for Computational Biology,Shanghai Institutes for Biological Sciences, Chinese Academy of Stephanie A Bryant and Jeramiah J Smith, University of Kentucky, Sciences, Shanghai, China Lexington, KY P0127: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0123: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Cellular Processes and Regulatory Networks - Odd Rice microRNAs Profiling in Response to Nitrogen-Resupplied Condition Distinct Recruitment Mechanisms for Aub and Ago3 to Nuage Lead to Functional Compartmentalization of the Pirna Pathway in Drosophila Sang-yoon Shin, Dooyoung Lee and Chanseok Shin, Seoul National University, Seoul, South Korea Alexandre Webster and Alexei Aravin, California Institute of Technology, Pasadena, CA P0128: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even P0124: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Deep Sequencing of Cold-Acclimated Wheat Crown Transcriptome Cellular Processes and Regulatory Networks - Even Evolution of Vertebrate Myelin-Associated Proteins: Insights from a Basal Debbie Laudencia-Chingcuanco, USDA ARS WRRC, Albany, CA and D Vertebrate (Sea Lamprey - Petromyzon marinus) Brian Fowler, University of Saskatchewan, Saskatoon, SK, SK, Canada

Kalen Nicole Wright and Jeramiah J Smith, University of Kentucky, Lexington, KY

213 P0129: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0131: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Cellular Processes and Regulatory Networks - Odd Exploring Metabolic Networks: Metacyc and SolCyc as Examples for Transcriptome Analysis of a cbf3 Mutant By RNA-Seq in Brachypodium High-Level Data Curation, Depository and Management Across and distachyon within Species Jingjie Hao1, Jiangli Dong2, Jinliang Yang3 and Shui-zhang Fei1, (1)Iowa State Hartmut Foerster1, Lukas Mueller1, Noe Fernandez-Pozo1, Aureliano University, Ames, IA, (2)China Agricultural University, Beijing, China, Bombarely2, Ron Caspi3 and Peter D Karp3, (1)Boyce Thompson Institute for (3)University of California-Davis, Davis, CA Plant Research, Ithaca, NY, (2)Virginia Polytechnic Institute and State University, Department of Horticulture, Blacksburg, VA, (3)SRI International, Menlo Park, CA P0132: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even

de novo Transcriptome Assembly and Differential Gene Expression P0130: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Profiling of Anthocyanin Biosynthesis in Zoysiagrass (Zoysia japonica Cellular Processes and Regulatory Networks - Even Steud)

Changes in the Wheat Primary Metabolism during Defense Against 1 2 2 1 1 Fusarium graminearum Jong Hwa Ahn , June-Sik Kim , Seungill Kim , Hye Yeon Soh , Hosub Shin , Ju Hyun Ryu1, Ki Sun Kim2, Doil Choi3 and Jin Hoe Huh2, (1)Department of Wolfgang Schweiger1, Karl G Kugler2, Thomas Nussbaumer2, Sapna Sharma3, plant science, SNU, Seoul, South Korea, (2)Seoul National University, Seoul, Benedikt Warth4, Alexandra Parich5, Marc Lemmens5, Gerhard Adam6, Rainer South Korea, (3)Department of plant science, PGBI of CALS, SNU, Seoul, Schuhmacher5, Klaus F X Mayer7 and Hermann Bürstmayr8, (1)BOKU - South Korea University of Natural Resources and Life Sciences, Tulln, Austria, (2)MIPS/IBIS, Helmholtz Center Munich, Munich, Germany, (3)Institute of Bioinformatics & Systems Biology, MIPS, Neuherberg, Germany, (4)BOKU, P0133: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Dept IFA-Tulln, Tulina, Austria, (5)BOKU, Dept IFA-Tulln, Tulin, Austria, Cellular Processes and Regulatory Networks - Odd (6)BOKU, Tulin, Austria, (7)Plant Genome and Systems Biology, Helmholtz Comparative Analysis of Homoeoallele Expression in the Tocol Center Munich, Neuherberg, Germany, (8)BOKU, Dept IFA-Tulln, Tulin, Biosynthetic Pathway during Oat Seed Development Australia Juan J Gutierrez-Gonzalez, University of Minnesota, Saint Paul, MN and

David F Garvin, USDA-ARS, PSRU, St Paul, MN

P0134: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0136: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Cellular Processes and Regulatory Networks - Even Divergent Epicuticular Wax and Transcriptomes of Edaphically The Analysis of the Relationship Between Gene Expression and Differentiated Andropogon Grasses in US Midwest Prairies Production of Resveratrol in Wild Species of Genus Arachis

Loretta C Johnson1, Jennifer Shelton2, Nora Bello3, Matthew Galliart4, Seth Paula V Carvalho1, Ana C M Brasileiro2, Soraya C M Leal-Bertioli3, Joseane Raithel5, Susan Brown6, Nicolae Herndon2, Ruth Welti7, Basil Nikolau8, Padilha4, Agostini-Costa Tânia5 and Marcos A Gimenes5, (1)Universidade Zhihong Song8, Thilani Samarkoon7 and Richard Jeanotte9, (1)Kansas state Estadual Paulista - UNESP, Brazil, Brasília, Brazil, (2)EMBRAPA Recursos university, Manhattan, KS, (2)Kansas State University, Bioinformatics Center, Genéticos e Biotecnologia, Brasília, Brazil, (3)Embrapa Genetic Manhattan, KS, (3)Kansas State University, Department of Statistics, Resources&Biotech, Brasilia, Brazil, (4)Embrapa, Brasília, Brazil, (5)Embrapa Manhattan, KS, (4)Kansas State University, Manhattan, KS, (5)Kansas State Genetic Resources and Biotechnology, Brasília, Brazil University, Statistics Department, Manhattan, KS, (6)Kansas State University, KSU Bioinformatics Center, Manhattan, KS, (7)Kansas State University, Biology DIvision, Manhattan, KS, (8)Biochemistry, Biophysics & Molecular P0137: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Biology, Ames, IA, (9)School of Veterinary Medicine, Davis, CA Cellular Processes and Regulatory Networks - Odd Transcriptome Profiling of Rust Resistance in Switchgrass Using RNA-Seq Analysis P0135: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Desalegn Serba, Srinavasa R Uppalapati, Shreyartha Mukherjee, Nick Krom, Expression of Proteins Involved in Host Plant Defense Against Greenbug Yuhong Tang, Kirankumar S Mysore and Malay C Saha, The Samuel Roberts Infestation Noble Foundation, Ardmore, OK

Yinghua Huang1, Kejing Xu2, Lei Chen2 and Chaoyin Yue2, (1)USDA ARS, Stillwater, OK, (2)China Three Gorges University, Yichang, China P0138: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even

Cell-Type Specific Metabolomic Analysis of White Clover Leaves Samira Rahimi Ashtiani1, Sareena Sahab2, Stephen Panter3, Yongjin Shang2, Simone Rochfort3, John G Mason4 and German Spangenberg1, (1)Department of Environment and Primary Industries, La Trobe University, Melbourne, Australia, (2)Department of Environment and Primary Industries, Melbourne, Australia, (3)Department of Environment and Primary Industries, Bundoora, Australia, (4)Department of Environment and Primary Industries, Bundoora, Victoria, Australia

214 P0139: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0143: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Cellular Processes and Regulatory Networks - Odd Engineering Cassava for High Beta Carotene and Understanding the Ribosomal Assembly Genes in Arabidopsis thaliana Impact of Other Metabolic Genes in Carotenoid Pathway Naghabushana K Nayidu, University of Saskatchewan, Saskatoon, SK, Jackson Gehan, Donald Danforth Plant Science Center, St Louis, MO Canada and Peta Bonham-Smith, University of saskatchewan, saskatoon, SK, Canada P0140: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even P0144: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Chemical Genomics of the Plant Immune System in Arabidopsis Cellular Processes and Regulatory Networks - Even thaliana and Development of Novel Non-Biocidal Reduced Risk-Pesticides A New RNA-Seq Method Reveals Plant Defence Responses at Higher Resolution Yasemin Bektas, Melinda Rodriguez-Salus, Mercedes Schroeder, Isgouhi Kaloshian and Thomas Eulgem, University of California - Riverside, Riverside, Walter Verweij and Matt Clark, The Genome Analysis Centre, Norwich, CA United Kingdom

P0141: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0145: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd Cellular Processes and Regulatory Networks - Odd Mow Me! Red Clover Transcriptomics to Understand Phenotypic Changes Genome-Wide Variation in Polyadenylation Site Usage and Association Under Different Land Use Scenarios Mapping in Arabidopsis MAGIC Founders Denise Herbert1, Annette Becker2, Oliver Rupp1 and Alexander Goesmann1, Li Lei1, Joshua G Steffen2, Robert Greenhalgh3, Edward J Osborne3, Philipp (1)Justus-Liebig-University, Gießen, Germany, (2)Justus-Liebig-University Drewe4, Andre Kahles4, Gunnar Rätsch4, Richard Mott5, Richard M Clark3 and Gießen, Gießen, Germany Christopher Toomajian1, (1)Kansas State University, Manhattan, KS, (2)Colby- Sawyer College, New London, NH, (3)University of Utah, Salt Lake City, UT, (4)Memorial Sloan-Kettering Cancer Center, New York, NY, (5)The Wellcome P0142: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Trust Centre for Human Genetics, Oxford, United Kingdom Cellular Processes and Regulatory Networks - Even

Direct Signaling Crosstalk Between Brassinosteroid and Abscisic Acid Regulates Root Growth Maintenance during Water Deficits in Soybean Li Lin, University of Missouri, Columbia, MO

P0146: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0149: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Cellular Processes and Regulatory Networks - Odd Physiogenomics of European Pear Ripening (Pyrus communis L) The Implication of Phenolic Acids in the Development of Prickles from the Glandular Trichomes of Raspberries, Roses, and Rose Hips Christopher Hendrickson1, Mark Swanson1, Todd Einhorn2 and Amit Dhingra3, (1)Washington State University, Pullman, WA, (2)Horticulture, Meaghan Trzasko and John David Swanson, Salve Regina University, Oregon State University , Hood River, OR, (3)Department of Horticulture, Newport, RI Washington State University, Pullman, WA P0150: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0147: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Cellular Processes and Regulatory Networks - Odd Analysis of cis-Regulatory Elements of Crassulacean Acid Metabolism RAR1 is Involved in an Effector-Induced Protein Phosphorylation in (CAM) Genes in Kalanchoe laxiflora Arabidopsis Jungmin Ha1, Won Cheol Yim2, Sung DON LIM1, James Hartwell3, Xiaohan Jun Liu, Institute of Microbiology, Chinese Academy of Sciences, Beijing, Yang4 and John C Cushman2, (1)University of Nevada, Reno, Reno, NV, China (2)Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV, (3)University of Liverpool, Liverpool, United Kingdom, (4)Oak Ridge National Laboratory, Oak Ridge, TN P0148: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even A Novel Framework for the Identification and Characterization of P0151: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Putative Positive and Negative cis-Acting Regulatory Elements in Cellular Processes and Regulatory Networks - Odd Arabidopsis thaliana Cold and Freezing Stress Responsive Gene Identification and Expression Profiling in Brassica oleracea Piotr Gawronski1, Piotr Bilski2, Jakub Weclawski2 and Stanislaw Karpinski1, (1)Warsaw University of Life Sciences, Warszawa, Poland, (2)Warsaw Nasar Uddin Ahmed1, Jong-In Park2, Hee-Jeong Jung1 and Illsup Nou1, University of Technology, Warszawa, Poland (1)Sunchon National University, Suncheon, South Korea, (2)Depertment of Horticulture, Sunchon National University, Suncheon, South Korea

215 P0152: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0155: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Cellular Processes and Regulatory Networks - Odd Transcriptomic Analysis of Cadmium Hyperaccumulation and Uncovering Transcriptional Gene Regulatory Networks Operating in the Hypertolerance in Sedum plumbizincicola Facultative CAM Species, Mesembryanthemum crystallinum

Jia-Shi Peng, Yue-Jun Wang, Hai-Ling Ma, Yi-Jing Zhang and Ji-Ming Gong, Bernard W M Wone1, Won Cheol Yim1, Rebecca L Albion1, Karen A Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Schlauch2 and John C Cushman1, (1)Department of Biochemistry and Sciences, Chinese Academy of Sciences, Shanghai, China Molecular Biology, University of Nevada, Reno, Reno, NV, (2)Nevada Center for Bioinformatics, University of Nevada, Reno, Reno, NV P0153: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd P0156: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Volatile Methyl Jasmonate Is a Transmissible Form of Jasmonate and Its Cellular Processes and Regulatory Networks - Even Biosynthesis Regulates Systemic Jasmonate Response in Wounding Genome-Wide Sequence and Expression Analysis of Functional Genes in the Genome of Jilin Ginseng, Panax ginseng CA Mey Tae Young Um, Han Yong Lee and Yang Do Choi, Department of Agricultural Biotechnology Seoul National University, Seoul, South Korea Kangyu Wang1, Yi Wang1, Shicui Jiang1, Yanfang Wang1, Rui Yin1, Chunyu 1 2 1 Sun , Hong-Bin Zhang and Meiping Zhang , (1)Jilin Agricultural University, Changchun, China, (2)Texas A&M University, College Station, TX P0154: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even de novo Transcriptome Analysis Reveals the Molecular Components of P0157: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Floral Scent Production in Thermogenic Arum concinnatum Cellular Processes and Regulatory Networks - Odd Glyphosate-Induced Branching in Leafy Spurge Involves Complex Yoshihiko Onda1, Keiichi Mochida1, Takuhiro Yoshida1, Tetsuya Sakurai1, 2 3 4 1 Interactions Associated with Cellular Transport, Phytohormone Signaling, Roger Seymour , Yui Umekawa , Stergios Arg Pirintsos , Kazuo Shinozaki and Meristem Maintenance and Kikukatsu Ito3, (1)RIKEN CSRS, Yokohama, Japan, (2)University of Adelaide, Adelaide, Australia, (3)Iwate University, Morioka, Japan, Munevver Dogramaci, Michael E Foley, David P Horvath and James V (4)University of Crete, Crete, Greece Anderson, USDA-ARS, Fargo, ND

P0158: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0161: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Cellular Processes and Regulatory Networks - Odd Isolation and Identification of a Peroxidase (TcPOD1) of Tamarix Changes in the Molecular Function Pathways of Ulva rigida throughout chinensis, a Gene in the Phenylalanine Metabolic Pathway, and Its the Blooming Season Potential Role in Salt Tolerance Megan Sylvia1, Morgan C Smith1, Carol Thornber2 and John David Swanson1, Nicole T Mihelich, University of Wisconsin-Madison, Madison, WI (1)Salve Regina University, Newport, RI, (2)University of Rhode Island, Kingston, RI P0159: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Odd P0162: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Variations of Gene Expression in the Formation of Macroalgal Blooms in Functional Analysis - Even Ulva rigida and Ulva compressa in Narraganset Bay, RI Genome Wide Gene Associated Differential Methylation Pattern in Humans Morgan C Smith1, Noe B Mercado1, John David Swanson1 and Carol Thornber2, (1)Salve Regina University, Newport, RI, (2)University of Rhode Meenu Joshi, University of Kwazulu-Natal, Durban, South Africa and Dyfed Island, Kingston, RI Evans, University of KwaZulu-Natal, Durban, South Africa

P0160: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0163: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks - Even Functional Analysis - Odd UGT74S1 Is Unique in Controlling Secoisolariciresinol Diglucoside (SDG) The PlantSEED Resource for Functional Annotation and Metabolic Formation in Flax Modeling of Plant Genomes and the Generation of Tissue-Specific Metabolic Models Bourlaye Fofana1, Kaushik Ghose1, Frank M You2 and Sylvie Cloutier3, (1)Agriculture and Agri-Food Canada, Charlottetown, PE, Canada, Samuel M D Seaver, Mathematics and Computer Science Division, Argonne (2)Agriculture and Agri-Food Canada, Morden, MB, Canada, (3)Agriculture National Laboratory, Argonne, IL and Agri-Food Canada, Ottawa, ON, Canada

216 P0164: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0167: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Functional Analysis - Odd De novo Assembly of Perilla citriodora for Gene Discovery Using RNA-Seq Sampling Site Effects on Bronchoalveolar Lavage Fluid Protein Expression in Bovine Respiratory Disease: A Proteomic Analysis Sung-Hwan Jo1, Jeong-Hee Lee1, Junkyoung Choe1, Ji-Eun Kim1, Sangmi Kim1, Bo Mi Lee1, Myoung Hee Lee2 and Tae-Ho Kim3, (1)SEEDERS Inc, Aswathy N Rai1, Leslie A Shack1, Joseph S Reddy1, Wes Baumgartner1, Daejeon, South Korea, (2)National Insistute of Crop Science, RDA, Miryang, William Epperson1, Ty B Schmidt2 and Bindu Nanduri1, (1)College of South Korea, (3)National Academy of Agricutural Science(NAAS), suwon, Veterinary Medicine, Mississippi State University, Mississippi State, MS, South Korea (2)University of Nebraska- Lincoln, Lincoln, NE

P0165: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0168: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Even Investigating Maternal Residual Feed Intake and Diet Interactions on Integrated Muscle Analysis of Transcriptome and Proteome of Piglet Myogenic Gene Expression in Newborn Calves Maturity Christina T Straathof1, Gervais Muhire2, Francois Paradis2, Hushton Block3, Valentin Voillet1, Magali San Cristobal1, Marie-Christine Père2, Laurianne Marcos G Colazo4, Barry Yaremcio5, Changxi Li2, Heather L Bruce2 and Canario1, Yvon Billon3, Louis Lefaucheur2 and Laurence Liaubet1, (1)INRA Carolyn Fitzsimmons2, (1)Univerisy of Alberta, Edmonton, AB, Canada, UMR1388 Génétique, Physiologie et Systèmes d’Elevage, Castanet, France, (2)University of Alberta, Edmonton, AB, Canada, (3)Agriculture and Agri- (2)INRA UMR1348 Physiologie, Environnement et Génétique pour l'Animal et Food Canada, Lacombe, AB, Canada, (4)Agriculture and Agri-Food Canada, les Systèmes d'Élevage, Saint-Gilles, France, (3)INRA, UE1372 GenESI, Edmonton, AB, Canada, (5)Agricultre and Agri-Food Canada, Stettler, AB, Saint-Pierre-d'Amilly, France Canada P0169: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0166: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Even Intrinsic Response to Hypoxic Stress Associated with Cellular Metabolism Non-Invasive Biomarkers of Embryo Development in Cattle and Inflammation in Beef Cattle Jenna Kropp, University of Wisconsin, Madison, WI and Hasan Khatib, Rebecca Cockrum1, Chelsee Holloway1, Xi Zeng2, Natalie F Berge2, Joe M University of Wisconsin Madison, Madison, WI Neary3, Tim Holt2, Harvey Blackburn4, Scott E Speidel2, Richard M Enns2 and 2 Milton Thomas , (1)Virginia Polytechnic Institute and State University, Blacksburg, VA, (2)Colorado State University, Fort Collins, CO, (3)Texas Tech University, Lubbock, TX, (4)National Center for Genetic Resources Preservation, USDA, Fort Collins, CO

P0170: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0173: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Functional Analysis - Odd Differential Expression Analysis of Placentae from Overfed/Obese Ewes Proteomics Analysis of Breast Muscle Tissue Associated with the and Lean Ewes Fed Only to Requirements Phenotypic Expression of Feed Efficiency in a Single Male Broiler Line

Stephanie M Guida1, Joann Mudge1, Connor T Cameron1, Ingrid E Lindquist1, Byung-Whi Kong1, Kentu Lassiter1, Devin Cook1, Alissa Piekarski1, Sami Craig W Beattie1, Wansheng Liu2 and Stephen P Ford3, (1)National Center for Dridi1, Nicholas James Hudson2 and Walter Bottje1, (1)University of Arkansas, Genome Resources (NCGR), Santa Fe, NM, (2)Department of Animal Science, Fayetteville, AR, (2)CSIRO Animal, Food and Health Sciences, Brisbane, Penn State University, University Park, PA, (3)University of Wyoming, Australia Laramie, WY P0174: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0171: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Functional Analysis - Odd FHL3 Differentially Regulates Expression of Four MyHC Isoforms Functional Analysis of microRNAs:mRNA Interactions Between through Interaction with MyoD and CREB Pseudorabies Virus (PrV) and Its Natural Pig Host Bo Zuo, College of Animal Science, Huazhong Agricultural University, Sophie Dhorne-Pollet1, Guillemette Marot2, Jérôme Lecardonnel1, Marco Wuhan, China 1 1 1 Moroldo , Florence Jaffrezic and Elisabetta Giuffra , (1)Institut National de la Recherche Agronomique, AgroParisTech, UMR1313 Génétique Animale et Biologie Intégrative, Jouy-en-Josas, France, (2)Université Lille 2, Inria Lille P0175: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Nord Europe, Lille, France Functional Analysis - Odd Quantitative Proteomics Analysis of Duck Eggshell during Biomineralization P0172: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Feng Zhu, China Agricultural University, BeiJing, China and Zhuocheng Hou, A Comprehensive Transcriptome Profiling Across Six Wool Follicle China Agricultural University, Beijing, China Developmental Stages of Chinese Merino Sheep Wenrong Li, Sangang He, Lei Chen, Shudong Liu, Zhilong Liu and Mingjun Liu, Xinjiang Academy of Animal Science, Urumqi, China

217 P0176: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0179: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Functional Analysis - Odd Age Effects on Gene Expression Related to the Bacterial Chondronecrosis The Complex Trait of C4 Photosynthesis Analyzed in Nine Independent with Osteomyelitis in Broiler Origins - Angiosperms

Mauricio Egidio Cantao1, Ricardo Zanella2, Jane de Oliveira Peixoto1, Andrea Braeutigam1, P a Christin2, Samantha Kurz3, Richard Leegood2, Colin Adriana Mercia Guaratini Ibelli1, Jose Rodrigo Pandolfi1, Matthew Settles3 and P Osborne2, M Eric Schranz4, Stefanie Sultmanis5, Tammy L Sage6, Rowan F Monica Correa Ledur1, (1)Embrapa Swine and Poultry, Concordia, Brazil, Sage5, Julian M Hibberd7, Udo Gowik8, Peter Westhoff8, Jean-Marie Droz9 and (2)CNPq/BJT at Embrapa Swine and Poultry, Concordia, Brazil, (3)University Andreas P M Weber1, (1)Plant Biochemistry (CEPLAS) Heinrich Heine of Idaho, Moscow, ID University Düsseldorf, Duesseldorf, Germany, (2)Department of Animal and Plant Sciences Sheffield University, Sheffield, United Kingdom, (3)Heinrich Heine University Düsseldorf, Duesseldorf, Germany, (4)Wageningen P0177: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): University and Research, Wageningen, Netherlands, (5)Ecology & Functional Analysis - Odd Evolutionary Biology, University of Toronto, Toronto, ON, Canada, Effects of Internal Space Increase on Catalase and Defensin Gene (6)Department of Ecology and Evolutionary Biology University of Toronto, Expression and Honey Production in Africanized Apis mellifera Honeybees Toronto, ON, Canada, (7)University of Cambridge, Cambridge, United Kingdom, (8)Developmental and Molecular Biology of Plants HHU 1 1 2 Juliana M Costa , Samir M Kadri , Paulo E Martins Ribolla , Diego P Duesseldorf, Duesseldorf, Germany, (9)Nebion AG, Zurich, Switzerland Alonso3 and Ricardo O Orsi1, (1)University of Veterinary Medicine and

Animal Sciences - UNESP, Botucatu, Brazil, (2)IBB - UNESP - Department of Parasitology, Botucatu, Brazil, (3)Department of Parasitology - IBB/UNESP, P0180: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Botucatu, Brazil Functional Analysis - Even Characterization of Transcription Factors Differentially Expressed Under Drought Conditions in Sugarcane (Saccharum spp) P0178: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Silvana Creste Souza1, Rafael Favero Peixoto Junior2, Paula M Nobile3, Role of Mir-145 and Mir-181 in Nile Tilapia (Oreochromis niloticus) Sex Larissa Mara Andrade4, Michael dos Santos Brito5 and Maria Helena de Souza Differentiation Goldman4, (1)Centro de Cana - Instituto Agronômico, Ribeirao Preto, Brazil, (2)Faculdade de Medicina de Ribeirão Preto, FMRP/USP, Ribeirão Preto,, Juliana Giusti, Sao Paulo State University - UNESP, Cajamar, Brazil Brazil, (3)Centro de Cana, Instituto Agronômico, Campinas, Brazil, (4)Faculdade de Medicina de Ribeirão Preto, FMRP/USP, Ribeirão Preto, Brazil, (5)Plant Biology Dept - IB-UNICAMP , Ribeirao Preto, Brazil

P0181: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0184: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Even Identifying Venom Gland Components of the Ectoparasitoid Wasp, Differential Gene Expression Between Roots of Drought-Tolerant and - Anisopteromalus calandrae Sensitive Sugar Cane Cultivars

Lindsey Perkin, Ken Friesen, Paul Flinn and Brenda Oppert, USDA ARS Juliana da Silva Vantini1, Gisele Cristina Dedemo2, Daniele Fernanda Center for Grain & Animal Health Research, Manhattan, KS Revoredo Gimenez1, Renata Izabel Dozzi Tezza3, Miguel Angelo Mutton4, 5 5 Jesus Aparecido Ferro and Maria Ines T Ferro , (1)UNESP/FCAV - Depto deTecnologia, Jaboticabal, Brazil, (2)UNESP/FCAV - Depto deTecnologia,, P0182: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Jaboticabal, Brazil, (3)FCAV/UNESP - CREBIO, Jaboticabal, Brazil, Functional Analysis - Even (4)UNESP/FCAV - Depto de Produção Vegetal/Fitotecnia, Jaboticabal, Brazil, Genome-Wide Landscape of Alternative Polyadenylation: Impact on (5)UNESP/FCAV - Depto de Tecnologia, Jaboticabal, Brazil Developmental Gene Expression Regulation in Rice Q Quinn Li1, Haihui Fu2, Wenyue Su2, Dewei Yang3, Xinfu Ye3, Xiaohui Wu2 P0185: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): and Guoli Ji2, (1)Miami University, Oxford, OH, (2)Xiamen University, Functional Analysis - Odd Xiamen, China, (3)Fujian Agricultural Science Academy, Fuzhou, China Identification and Characterization of Wheat Genes Contributing in Plant Resistance to Fusarium graminearum and the Mycotoxin Deoxynivalenol P0183: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Alexandre Perochon, University College Dublin, Dublin, Ireland Functional Analysis - Odd

The Brown midrib2 and Brown midrib4 mutants of Maize Link Lignin Biosynthesis to Methylation and Polyglutamylation P0186: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Sarah Ellen Hill-Skinner1, Li Li1, Ho Man Tang2, Sanzhen Liu1, Danielle 2 1 1 3 1 Suppression of Rye Omega Secalins and Related Wheat Proteins in a Beuchle , Wei Wu , Cheng-Ting Yeh , Dan Nettleton and Patrick S Schnable , Wheat Variety Carrying a 1BL1RS Translocation (1)Department of Agronomy, Iowa State University, Ames, IA, (2)Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, Ann E Blechl1, William Vensel1, Susan B Altenbach1, Charlene Tanaka1, Brian (3)Iowa State University, Ames, IA S Beecher2 and Lydia Li3, (1)USDA-ARS, Albany, CA, (2)USDA-GIPSA, Kansas City, MO, (3)Johns Hopkins University, Baltimore, MD

218 P0187: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0191: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Odd Wheat COP9 Subunit 5 Gene Is Negatively Involved in Host Resistance to Proteomic Analysis of Barley Cell Nuclei at Different Phases of Cell Cycle Leaf Rust Beata Petrovska1, Hana Jerabkova1, Ivo Chamrad2, Jan Vrana1, Jan Safar1, Hongtao Zhang, Montana State University, Bozeman, MT Rene Lenobel2, Jana Urinovska2, Marek Sebela2 and Jaroslav Dolezel1, (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)Palacky University, Olomouc, Czech Republic P0188: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Genome-Wide Identification, Characterization and Expression Profiles of P0192: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Calcium-Dependent Protein Kinase Genes in Barley (Hordeum vulgare L) Functional Analysis - Even

1 1 1 Expression of Distinct Blumeria graminis Effectors in Response to Isogenic Olga Fedorowicz-Stronska , Grzegorz Koczyk , Malgorzata Kaczmarek , Barley Mutant Genotypes Pawel Krajewski1 and Jan Sadowski2, (1)Institute of Plant Genetics PAS, Poznan, Poland, (2)Adam Mickiewicz University, Poznan, Poland Antony V E Chapman1, Priyanka Surana1, Weihui Xu1, Yan Meng2, Greg 3 1 3 Fuerst , Dan Nettleton and Roger Wise , (1)Iowa State University, Ames, IA, (2)Alcorn State University, Lorman, MS, (3)USDA-ARS, Iowa State P0189: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): University, Ames, IA Functional Analysis - Odd

Wheat Gene Expression Differences Induced By Six Puccinia triticina Races P0193: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd 1 2 1 3 Kerri Neugebauer , Myron Bruce , Harold N Trick and John Fellers , Transcriptome Response in Different Tissues of Lolium arundinaceum to (1)Kansas State University, Manhattan, KS, (2)USDA-ARS-HWWGRU, the Fungal Endophyte Epichloe coenophiala Manhattan, KS, (3)USDA ARS, Manhattan, KS 1 2 3 Randy Dinkins , Padmaja Nagabhyru , Michelle A Graham , Deborah Boykin4 and Christopher Schardl2, (1)USDA-ARS, Forage-Animal Production P0190: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Research Unit, Lexington, KY, (2)University of Kentucky, Lexington, KY, Functional Analysis - Even (3)USDA-ARS-CICGRU, Ames, IA, (4)USDA-ARS, Stoneville, MS A Whole-Genome Transcriptional Analysis of Barley in Response to Infection By Cochliobolus sativus Matthew William Haas, University of Minnesota, Saint Paul, MN and Brian J Steffenson, University of Minnesota, St Paul, MN

P0194: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0197: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Functional Analysis - Odd Expression Profiling of miRNAs and Their Target Genes Under Salt Stress Genome Wide Alternative Polyadenylation and Gene Expression Studies in the Halophyte Smooth Cordgrass (Spartina alterniflora Loisel) in Forage Crops - Tall Fescue and Red Clover

Hana Zandkarimi1, Venkata R Mangu2, Renesh Bedre2 and Niranjan Manohar Chakrabarti1, Randy Dinkins2 and Arthur Hunt1, (1)Department of Baisakh2, (1)Louisiana State university Agricultural Center, Baton Rouge, LA, Plant and Soil Sciences, University of Kentucky, Lexington, KY, (2)USDA- (2)Louisiana State University Agricultural Center, Baton Rouge, LA ARS, Forage-Animal Production Research Unit, Lexington, KY

P0195: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0198: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Even Gene Expression Changes in Interspecific Festuca x Lolium Hybrids Transcriptomic Changes Due to Water Deficit Define a General Soybean (xFestulolium) Response and Lineage-Specific Pathways of Drought Avoidance

Stepan Stoc es1, Tom Ruttink2, David Kopecky1, Michael Abrouk1, Jan Justin N Vaughn, University of Georgia, Athens, GA 1 1 Barto# and Jaroslav Dolezel , (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)ILVO-Plant Sciences Unit-Growth and Development, Melle, Belgium P0199: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd

Isolation and Identification of the Proteins Contributing to English Ivy P0196: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Nanoparticle Formation Functional Analysis - Even 1 2 1 1 AP Endonucleases Process 5-Methylcytosine Excision Intermediates Jason N Burris , Scott C Lenaghan , Yanhui Peng and C Neal Stewart Jr , During Active DNA Demethylation in Arabidopsis (1)Department of Plant Sciences, University of Tennessee, Knoxville, TN, (2)Center for Renewable Carbon, University of Tennessee, Knoxville, TN 1 2 2 2 2 Jiyoon Lee , Hosung Jang , Hosub Shin , Woo Lee Choi , Young Geun Mok and Jin Hoe Huh3, (1)Samsung Bioepis, Incheon, South Korea, (2)Department of plant science, SNU, Seoul, South Korea, (3)Seoul National University, P0200: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Seoul, South Korea Functional Analysis - Even Different Molecular Mechanisms of Plant Thermotolerance at High and Extremely High Temperatures Yuke He, Shanghai Institute of Plant Physiology & Ecology, Chinese Academy of Sciences, Shanghai, China

219 P0201: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0204: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Even Proteomic Analysis of Germinating Soybean Hypocotyl Using Quadrupole Differential Expression of Candidate Genes Involved in Root-Knot Orbitrap Mass Spectrometer Nematode Resistance in Cowpea [Vigna unguiculata (L) Walp]

Yue-ie C Hsing, Institute Plant and Microbial Biology, Academia Sinica,, Jansen Rodrigo Pereira Santos1, Arsenio Daniel Ndeve2, Bao Lam Huynh2, Taipei, Taiwan and Ming-der Shih, Institute of Plant and Microbial Biology, William Charles Matthews2, Steve Wanamaker3, Mitchell R Lucas3, Maria Academia Sinica, Taipei, Taiwan Muñoz-Amatriain3, Timothy J Close3 and Philip A Roberts3, (1)University of California-Riverside (UC Riverside), Riverside, CA, (2)University of California - Riverside, Riverside, CA, (3)University of California, Riverside, P0202: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): CA Functional Analysis - Even

Comparative Transcriptome Analysis Between Cytoplasmic Male Sterile Line NJCMS1A and Its Maintainer NJCMS1B in Soybean (Glycine max P0205: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): (L) Merr) Functional Analysis - Odd High-Throughput RNA-Seq Data for Amino Acid Pathways in Developing Shouping Yang, Soybean Research Institute - Nanjing Agricultural University, Soybean Seeds Nanjing, China Sarah I Jones and Lila Vodkin, University of Illinois, Urbana, IL P0203: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd P0206: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Gene Expression and Functional Analysis of Soybean Genes with Diurnal Functional Analysis - Even Oscillation during Drought Stress Comprehensive Heat Transcriptome Analyses Towards Identification of Heat Stress Responsive Genes in Chickpea (Cicer arietinum L) Juliana Marcolino Gomes1, Thiago J Nakayama2, Rafaela Ribeiro Reis1, Fabiana Aparecida Rodrigues3, Liliane M Mertz Henning3, Renata Fuganti- Himabindu Kudapa, Gaurav Agarwal, Vinay Kumar, Anu Chitikineni, Pooran Pagliarini3, Hugo B Correa Molinari4, Frank Harmon5 and Alexandre M Gaur, L Krishnamurthy and Rajeev K Varshney, ICRISAT, Hyderabad, Nepomuceno3, (1)State University of Londrina/ Embrapa Soybean, Londrina, India Brazil, (2)Federal University of Viçosa/ Embrapa Soybean, Londrina, Brazil, (3)Embrapa Soybean, Londrina, Brazil, (4)Embrapa Agroenergy, Brasília, Brazil, (5)ARS/USDA Plant Gene Expression Center, Albany, CA

P0207: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0210: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Even Transcription Factors and Glyoxylate Cycle Genes Prominent in the Functional Analysis of the Coffee (Coffea arabica) 14-3-3 Gene Promoter Transition of Soybean Cotyledons to the First Functional Leaves of the Seedling Fabiola Ocampo, IB - UNESP - Department of Genetics, Botucatu, Brazil and Ivan G Maia, IB - UNESP - Department of Genetics, Botucatu, SP, Brazil Md Shamimuzzaman and Lila Vodkin, University of Illinois, Urbana, IL P0211: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0208: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Even Genome-Wide Survey and Characterization of AP2/Erf and HSP90 Gene Comprehensive Genomic and Molecular Breeding Efforts to Understand Family in Five Legume Species Genetic Control of Aflatoxin Contamination in Peanut Gaurav Agarwal, Himabindu Kudapa, Vanika Garg, Lekha T Pazhamala, Spurthi N Nayak1, Gaurav Agarwal1, Harikishan Sudini1, Manish K Pandey1, Dadakhalandar Doddamani, Aamir W Khan and Rajeev K Varshney, Hari D Upadhyaya1, Ashwin S Jayale1, Vinay Kumar1, Falalou Hamidou2, ICRISAT, Hyderabad, India 1 1 3 4 Abhishek Rathore , Pasupuleti Janila , Haile Desmae , Hongjie Li , Xuanqiang Liang5, Boshou Liao6, Baozhu Guo7, Peggy Ozias-Akins8 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)ICRISAT, Niamey, Niger, P0212: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): (3)ICRISAT, Bamako, Mali, (4)ShanDong Shofine Seed Technology Co Ltd, Functional Analysis - Even Jining, China, (5)Crop Research Institute, Guangzhou, China, (6)Oil Crops Overexpression of Switchgrass Histone H3 tagged with YFP Fusion Genes Research Institute, Wuhan, China, (7)USDA-ARS, Crop Protection and Trigger Programmed Cell Death in Nicotiana benthamiana Management Research Unit, Tifton, GA, (8)University of Georgia, Tifton, GA Jiamin Miao1, Taylor P Frazier1, Bingyu Zhao1, Xinquan Zhang2 and Linkai 2 Huang , (1)Virginia Tech, Blacksburg, VA, (2)Sichuan Agricultural University, P0209: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Ya'an, China Functional Analysis - Odd

Protein-Protein Interactions of Transcription Factors from the Drought QTL-Hotspot Linked to Stress Tolerance in Chickpea Himabindu Kudapa, Abirami Ramalingam, Spurthi Nayak, Lekha T Pazhamala, Deepa Jaganathan, Sandeep Kale, L Krishnamurthy, Pooran M Gaur and Rajeev K Varshney, ICRISAT, Hyderabad, India

220 P0213: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0216: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Even Transcriptome Analysis in Leaves, Flowers and Initial Fruit Development Regulatory Landscape of Small Intergenic Regions in a Compact Plant of Coffea arabica L Genome

Suzana Tiemi Ivamoto1, Osvaldo Reis Júnior2, Leonardo Murai Sakuray3, Sergio Alan Cervantes-Pérez, Laboratorio Nacional de Genómica para la Priscila Mary Yuyama4, Marcelo Falsarella Carazzolle5, Gonçalo Amarante Biodiversidad México, Irapuato, Guanajuato, Mexico, Araceli Oropeza-Aburto, Guimarães Pereira5, Douglas S Domingues1 and Luiz F P Pereira6, (1)Instituto Laboratorio Nacional de Genómica para la Biodiversidad, Irapuato, Agronômico do Paraná, Londrina, Brazil, (2)Universidade Estadual de Guanajuato, Mexico, Enrique Ibarra-Laclette, Red de estudios moleculares Campinas, Campinas, Brazil, (3)UEL, Londrina, Brazil, (4)UFRGS, Porto avanzados, Instituto de Ecología AC-INECOL, Xalapa, Veracruz, Mexico and Alegre, Brazil, (5)Genomics and Expression Laboratory - State University of Luis Herrrera-Estrella, Laboratorio Nacional de Genomica para la Campinas - UNICAMP, Campinas, Brazil, (6)Embrapa Café, Londrina, Brazil Biodiversidad, Irapuato, Guanajuato, Mexico

P0214: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0217: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Functional Analysis - Odd Coupling Gene to Function in Strawberry The Strigolactone Pathway Genes in Populus Kevin M Folta, University of Florida, Gainesville, FL, Jeremy Pillet, Jay Chen, Xiaoping Wang, Olaf Czarnecki, Kai Feng, Wellington Muchero UNIVERSITY OF FLORIDA, GAINESVILLE, FL and Alan Chambers, and Gerald A Tuskan, Oak Ridge National Laboratory, Oak Ridge, TN Florida University, Gainesville, FL P0218: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0215: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even Functional Analysis - Odd Engineering CAM Photosynthetic Machinery into C3 Arabidopsis - Inheritance, Gene Expression, and Valencene Quantification in a Mesembryanthemum crystallinum Mandarin Hybrid Deficient in Valencene Synthase CsTps1 Sung Don Lim1, Won Cheol Yim2, Rebecca L Albion2 and John C Cushman2, Qibin Yu1, Ming Huang2, Yuan Yu3, Cuiming Tang4, Yanbo Wang1, Jinhe (1)University of Nevada, Reno, Reno, NV, (2)Department of Biochemistry and Bai5, Anne Plotto5, Elizabeth A Baldwin5 and Fred G Gmitter6, (1)University of Molecular Biology, University of Nevada, Reno, Reno, NV Florida, Lake Alfred, FL, (2)Citrus Research & Education Center, University of Florida, Lake Alfred, FL, (3)Horticultural Sciences, University of Florida, Lake Alfred, FL, (4)Guangdong Academy of Agricultural Sciences, Guangzhou, China, (5)USDA-ARS, U S Horticultural Research Laboratory, Fort Pierce, FL, (6)University of Florida, IFAS-CREC, Lake Alfred, FL

P0219: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0222: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Odd Functional Analysis - Even Exploration of Drought Responding Genes in Camelina sativa Root Transcriptome of the Pachycereus pringlei, a Sonoran Desert Cactus with Determinate Growth of the Primary Root Geung-Joo Lee1, Sung Jin Chung1 and Bashistha Kanth2, (1)Chungnam National University, Daejeon, South Korea, (2)Chungnam National Univeristy, Gustavo Rodriguez-Alonso1, Marta Matvienko2, Mayra Lopez-Valle1, Joseph Daejeon, South Korea G Dubrovsky1 and Svetlana Shishkova1, (1)Instituto de Biotecnología, UNAM, Cuernavaca, Mexico, (2)CLC bio, Davis, CA P0220: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis - Even P0223: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): The Heat Shock Protein 70 Gene Family from Pyropia seriata and Increase Functional Analysis - Odd of the Heat Tolerance By Overexpression of the PsHSP70d in The Gene for Chloroplast Ribosomal Protein S16 is Located in Both Chlamydomonas Chloroplast and Nuclear Genomes: Expression of its Chloroplast Gene

San Choi1, Sunhee Kim1, Won-Joong Jeong2, Mi Sook Hwang3 and Dong- Masahiro Sugiura, Nagoya University, Center for Gene Research, Nagoya, Woog Choi1, (1)Chonnam National University, Gwangju, South Korea, Japan (2)KRIBB, Daejeon, South Korea, (3)Aquatic Plant Variety Center, NFRDI, Mokpo, South Korea P0224: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Even P0221: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Genomics Resources at EBI: ArrayExpress and Expression Functional Analysis - Odd Atlas The Transcriptome Sequence Analysis of Artemisia frigida Maria Keays, European Bioinformatics Institute (EMBL-EBI), Hinxton, Yue Liu1, Xiaoxiao Feng1, Yi Wang2, Naxin Huo3, Xu Ma1 and Chuanchuan United Kingdom 1 Chen , (1)Minzu University of China, Beijing, China, (2)USDA ARS, Western Regional Research Center, Albany, CA, (3)Department of Plant Sciences, University of California, Davis, CA

221 P0225: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0228: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Odd Microarrays - Even Whole Blood Microarray Analysis of Pigs Showing Extreme Phenotypes Large-Scale Housekeeping Genes Mining from Public Database: A Case in After a Porcine Reproductive and Respiratory Syndrome Virus (PRRSv) Gramineae Crop Infection Zhongxu Chen, Triticeae Research Institute,Sichuan Agriculture University, Martine Schroyen1, Juan P Steibel2, Igseo Choi3, James E Koltes1, Chris chengdu, China and Jirui Wang, Sichuan Agricultural University, Eisley4, Eric Fritz-Waters1, James M Reecy1, Jack CM Dekkers5, Raymond R R CHENGDU, China 6 3 2 1 Rowland , Joan K Lunney , Cathy Ernst and Christopher K Tuggle , (1)Department of Animal Science, Iowa State University, Ames, IA, (2)Department of Animal Science, Michigan State University, East Lansing, P0229: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): MI, (3)APDL, BARC, ARS, USDA, Beltsville, MD, (4)Department of Microarrays - Odd Statistics, Iowa State University, Ames, IA, (5)Iowa State University, Ames, QTL Mapping Combined with Microarray Profiling Data for the IA, (6)Department of Diagnostic Medicine/Pathobiology, College of Veterinary Identification of Pine Wood Nematode (PWN) Resistance Genes in Pinus Medicine, Kansas State University, Manhattan, KS thunbergii

Tomonori Hirao, Forestry and Forest Products Research Institute, Hitachi, P0226: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Ibaraki, Japan, Koji Matsunaga, Kyushu Breeding Office for FTBC, Goshi, Microarrays - Even Japan, Kentaro Mishima, Forest Tree Breeding Center, Forestry and Forest A Microarray for Measuring Medicago Expression Products Research Institute, Hitachi, Japan and Atsushi Watanabe, Faculty of Agriculture, Kyushu University, Fukuoka, Japan Stan Trask, Affymetrix, Santa Clara, CA P0230: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): P0227: Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Microarrays - Even Microarrays - Odd Exploring Tomato Genes with a Microarray (Solanum lycopersicum) After Ripening and Abscisic Acid Mediated Changes in the Expression of Brassinosteroid and Ethylene Genes in Wheat Seeds Stan Trask, Affymetrix, Santa Clara, CA

Vijaya R Chitnis1, Feng Gao1, Zhen Yao1, Mark Jordan2 and Belay T Ayele1, (1)Department of Plant Science, University of Manitoba, Winnipeg, MB, Canada, (2)Cereal Research Center, Agriculture and Agri-Food Canada, Morden, MB, Canada

P0231: Genome Mapping, Tagging & Characterization: Aquaculture - Odd P0234: Genome Mapping, Tagging & Characterization: Aquaculture - Even de novo Genome Assembly of the South American Freshwater Fish Distinct Tissue-Specific Gene Expression Reveals Different Creatine- Tambaqui (Colossoma macropomum) Synthesizing Pathways Between Mammals and Fish Francisco P Lobo1, Leandro C Cintra1, Eduardo Sousa Varela2, Anderson Luis Andreas Borchel1, Marieke Verleih1, Alexander Rebl1, Bernd Köllner2, Alves2, Luciana Cristine Vasques Villela3, Naiara Milagres Augusto da Silva4, Carsten Kühn3 and Tom Goldammer1, (1)Leibniz Institute for Farm Animal Samuel Rezende Paiva5 and Alexandre R Caetano4, (1)Embrapa Informática Biology (FBN), Dummerstorf, Germany, (2)Friedrich Loeffler Institute (FLI), Agropecuária, Campinas, SP, Brazil, (2)Embrapa Pesca e Aquicultura, Palmas, Greifswald-Insel Riems, Germany, (3)State Res Centre Agriculture & Fishery TO, Brazil, (3)Programa de Pós-Graduação em Ciências Animais, Universidade (LFA-MV), Rostock, Germany de Brasília, Brasilia, DF, Brazil, (4)Embrapa Recursos Genéticos e Biotecnologia, Brasilia, DF, Brazil, (5)Embrapa Labex US – Secretariat of International Affairs, Fort Collins, CO P0235: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Characterization of Maskin Isoforms in Atlantic Salmon, a Candidate Gene Associated to Sexual Maturation P0232: Genome Mapping, Tagging & Characterization: Aquaculture - Even The de novo Draft Genome Assembly of Yellowtail, Seriola lalandi Alejandro P Gutierrez and William S Davidson, Simon Fraser University, Burnaby, BC, Canada 1 2 2 1 Andrew J Severin , John Hyde , Catherine Purcell and Arun Seetharam , (1)Iowa State University, Ames, IA, (2)Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, CA P0236: Genome Mapping, Tagging & Characterization: Aquaculture - Even Stepping Toward Sustainable Aquaculture: Genomic Resource Development to Help Guide Broodstock Selection and Culture Practices P0233: Genome Mapping, Tagging & Characterization: Aquaculture - Odd for the California Yellowtail, Seriola lalandi

Can Epigenetic Regulation of Sex-Ratios Explain Natural Variation in 1 2 3 1 Self-Fertilization Rates? - Kryptolebias marmoratus Catherine Purcell , Andrew J Severin , Vincent Buonaccorsi and John Hyde , (1)Southwest Fisheries Science Center, National Marine Fisheries Service, La Amy Ellison1, Carlos M Rodriguez Lopez2, Paloma Moran3, Martin Swain4, Jolla, CA, (2)Iowa State University, Ames, IA, (3)Juniata College, Huntingdon, Manuel Megias3, Matthew Hegarty5, James M Breen2, Michael J Wilkinson2 PA 6 and Sofia Consuegra , (1)Cornell University, Ithaca, NY, (2)University of Adelaide, Adelaide, Australia, (3)Universidad de Vigo, Vigo, Spain, (4)Aberystwyth University, Aberystwyth, United Kingdom, (5)IBERS, Aberystwyth University, Aberystwyth, United Kingdom, (6)Swansea University, Swansea, United Kingdom

222 P0237: Genome Mapping, Tagging & Characterization: Aquaculture - Odd P0241: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Tissue and Disease Specific Expression of miRNA Genes in Atlantic RNA-Seq Analysis Unraveled Genes and Pathways Involved in Testicular Salmon (Salmo salar) Differentiation in Channel Catfish Rune Andreassen, Oslo and Akershus University College of Applied Qifan Zeng, Auburn University, Auburn, AL Sciences, Oslo, Norway, Merete M Worren, Bioinformatics Core Facility, Institute for Medical Informatics, Oslo University Hospital,, Oslo, Norway and Bjørn Høyheim, Department of Basic Sciences and Aquatic Medicine, Faculty P0242: Genome Mapping, Tagging & Characterization: Aquaculture - Even of Veterinary Medicine and Biosciences, Norwegian University of Life Characterization of Complement Regulatory Genes in Channel Catfish Sciences, Oslo, Norway and Their Involvement in Disease Defense Response

Chen Jiang, Jiaren Zhang, Jun Yao, Shikai Liu, Yun Li, Lin Song, Chao Li P0238: Genome Mapping, Tagging & Characterization: Aquaculture - Even and John Liu, Auburn University, Auburn, AL Yeast Two-Hybridization Analyses of Atlantic Salmon sdY Interactions Agnieszka Stadnik, Simon Fraser University, Burnaby, BC, Canada P0243: Genome Mapping, Tagging & Characterization: Aquaculture - Odd GWAS Analyses in Catfish Reveal the Presence of Functional Hubs of Related Genes Within Major QTLs for Columnaris Disease Resistance P0239: Genome Mapping, Tagging & Characterization: Aquaculture - Odd A Genome Sequence Assembly for Channel Catfish, Ictalurus punctatus Xin Geng, Auburn University, Auburn, AL

Geoff Waldbieser, USDA - Agricultural Research Service, Stoneville, MS and John Liu, Auburn University, Auburn, AL P0244: Genome Mapping, Tagging & Characterization: Aquaculture - Even The Development and Characterization of a 57K SNP Array for Rainbow Trout P0240: Genome Mapping, Tagging & Characterization: Aquaculture - Even 1 1 2 3 4 Allele-Specific Expression in Interspecific Catfish Hybrids Yniv Palti , Guangtu Gao , Thomas Moen , Sixin Liu , Sigbjørn Lien , Matthew P Kent4, Caird E Rexroad, III1 and Michael Miller5, (1)USDA-ARS- Ailu Chen, Ruijia Wang, Luyang Sun, Lisui Bao, Chao Li, Chen Jiang, Shikai NCCCWA, Kearneysville, WV, (2)Aquagen, Trondheim, Norway, (3)USDA- Liu and John Liu, Auburn University, Auburn, AL ARS-NCCCWA, Kearnysville, WV, (4)CIGENE, Norwegian University of Life Sciences, Aas, Norway, (5)UC Davis, Davis, CA

P0245: Genome Mapping, Tagging & Characterization: Aquaculture - Odd P0249: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Transcriptomic Signatures in Common Carp Skin during Scale Microsatellite and Sequence Data Reveal Population Structure in Regeneration California Redband Trout, Oncorhynchus mykiss subspp Jun Yao, Jiaren Zhang, Shikai Liu, Qifan Zeng, Luyang Sun, Baofeng Su, Rachel E Simmons, National University, La Jolla, CA and Bernie P May, Chen Jiang, Yun Li, Rex Dunham and John Liu, Auburn University, Auburn, University of California, Davis, Davis, CA AL P0250: Genome Mapping, Tagging & Characterization: Aquaculture - Even P0246: Genome Mapping, Tagging & Characterization: Aquaculture - Even Differential Expression of miRNAs in Skeletal Muscle of Rainbow Trout Comprehensive Characterization of 9,674 Rainbow Trout (Oncorhynchus Under the Influence of Estrogen mykiss) Large Intergenic Noncoding RNAs Using Next Generation 1 1 1 2 Sequencing Prasanthi P Koganti , Jian Wang , Hao Ma , Beth Cleveland , Gregory M Weber2 and Jianbo Yao1, (1)West Virginia University, Morgantown, WV, Jian Wang and Jianbo Yao, West Virginia University, Morgantown, WV (2)USDA-ARS-NCCCWA, Kearneysville, WV

P0247: Genome Mapping, Tagging & Characterization: Aquaculture - Odd P0251: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Development of a Fluidigm SNP Panel for Genetic Analysis in Rainbow Identification of Mitochondrial microRNAs Related to Egg Deterioration Trout Caused By Post-Ovulatory Aging in Rainbow Trout Sixin Liu, Caird E Rexroad, III, Guangtu Gao and Yniv Palti, USDA-ARS- Hao Ma and Jianbo Yao, West Virginia University, Morgantown, WV NCCCWA, Kearneysville, WV P0252: Genome Mapping, Tagging & Characterization: Aquaculture - Even P0248: Genome Mapping, Tagging & Characterization: Aquaculture - Even Accuracy of Genomic Prediction for BCWD Resistance in Rainbow Trout Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout Using Different Genotyping Platforms and Genomic Selection Models and Their Potential Roles in Muscle Growth and Quality Roger L Vallejo, Timothy D Leeds, Sixin Liu, Guangtu Gao, Timothy J Rafet Al-Tobasei1, Bam D Paneru1, Gary Thorgaard2, Jianbo Yao3, Timothy D Welch, Gregory D Wiens and Yniv Palti, USDA-ARS-NCCCWA, Leeds4, Brett Kenney3 and Mohamed Salem1, (1)Middle Tennessee State Kearneysville, WV University, Murfreesboro, TN, (2)Washington State University, Pullman, WA, (3)West Virginia University, Morgantown, WV, (4)USDA-ARS-NCCCWA, Kearneysville, WV

223 P0253: Genome Mapping, Tagging & Characterization: Aquaculture - Odd P0257: Genome Mapping, Tagging & Characterization: Aquaculture - Odd RNA-Seq Identifies SNPs Associated with Muscle Yield and Other Sex Markers in Two Sebastes Rockfishes Qualities in Rainbow Trout Ben Fowler and Vincent Buonaccorsi, Juniata College, Huntingdon, PA Bam D Paneru, Middle Tennessee State University, Murfreesboro, TN P0258: Genome Mapping, Tagging & Characterization: Aquaculture - Even P0254: Genome Mapping, Tagging & Characterization: Aquaculture - Even Evaluation of Seven Microsatellite DNA Markers for Their Genetic Rainbow Trout (Oncorhynchus mykiss) Resistance to Columnaris Disease Variation and Application to Paternity Determination in Pacific White Is Heritable and Favorably Correlated with Bacterial Cold Water Disease Shrimp, Penaeus vannamei Resistance Yvonne Lee1, Dustin Moss2, Shaun Moss2 and Jinzeng Yang3, (1)University of Jason P Evenhuis1, Timothy D Leeds1, David P Marancik1, Scott LaPatra2 and Hawaii, Manoa, HI, (2)Oceanic Institute of Hawaii Pacific University, HI, Gregory D Wiens1, (1)USDA-ARS-NCCCWA, Kearneysville, WV, (2)Clear (3)University of Hawaii at Manoa, Honolulu, HI Springs Foods, Buhl, ID P0259: Genome Mapping, Tagging & Characterization: Aquaculture - Odd P0255: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Pedigree Traceability in Shrimp with Microsatellites Developed By NGS Social Hierarchy and Differential Expression of drd2, mao and nnos in Juvenile Rainbow Trout (Oncorhynchus mykiss) Ricardo Perez-Enriquez, Centro de Investigaciones Biologicas del Noroeste, SC, La Paz, BCS, Mexico, Jesus A Medina-Espinoza, Centro de Soniya Balli, University of Massachusetts Dartmouth, Dartmouth, MA and Investigaciones Biológicas del Noroeste, SC, La Paz, BCS, Mexico, Victor Robert Drew, University of Massachusetts-Dartmouth, Dartmouth, MA Suarez-Lopez, Universidad Autónoma de Baja California Sur, LA PAZ, Mexico, Adriana Max-Aguilar, CIBNOR, LA PAZ, Mexico, Pedro Cruz- Hernandez, Centro de Investigaciones Biologicas del Noroeste, LA PAZ, P0256: Genome Mapping, Tagging & Characterization: Aquaculture - Even Mexico and Cesar J Saucedo-Barron, Instituto Sinaloense de Acuacultura y Population Genomics of West Coast and Alaskan Sablefish (Anoplopoma Pesca, Culiacan, Mexico fimbria) Andrew Jasonowicz1, Krista M Nichols2, Giles Goetz1 and Frederick Goetz3, (1)University of Washington, Seattle, WA, (2)NOAA Fisheries, Seattle, WA, (3)NOAA Fisheries, Port Orchard, WA

P0260: Genome Mapping, Tagging & Characterization: Aquaculture - Even P0264: Genome Mapping, Tagging & Characterization: Cattle - Even Contrasting Patterns of Neutral and Adaptive Genetic Variation of Genome Wide Association Study of E coli O157:H7 Vaccine Response in Chilean Blue Mussel (Mytilus chilensis) Due to Local Adaptation and Beef Cattle Aquaculture Kara B Marley1, Larry A Kuehn2, John W Keele3, Ben Wileman4 and Michael Cristian Araneda, Universidad de Chile, Depto de Produccion Animal, G Gonda1, (1)South Dakota State University, Brookings, SD, (2)USDA-ARS, Santiago, Chile, M Angelica Larrain, Universidad de Chile, Departamento de US Meat Animal Research Center, Clay Center, NE, (3)USDA, ARS, Ciencia de los Alimentos y Tecnología Química, Santiago, Chile, Benjamin USMARC, Clay Center, NE, (4)Kansas State University, Manhattan, KS Hecht, University of Idaho, Hagerman, ID and Shawn Narum, Columbia River Inter-Tribal Fish Commission, Hagerman, ID P0265: Genome Mapping, Tagging & Characterization: Cattle - Odd

Detection of Genome-Wide Copy Number Variation in Bovine Using the P0261: Genome Mapping, Tagging & Characterization: Aquaculture - Odd Axiom® Genotyping Solution from Affymetrix Identification of White Spot Syndrome Virus Homologues in the Genome of Kuruma Shrimp Ali Pirani, Ram Varma and Teresa A Webster, Affymetrix Inc, Santa Clara, CA Yuanyuan Wang, Tokyo University of Marine Science and Technology, Tokyo, Japan P0266: Genome Mapping, Tagging & Characterization: Cattle - Even

selectSNP: An R Package for Selecting SNPs Optimal for Genetic P0262: Genome Mapping, Tagging & Characterization: Aquaculture - Even Evaluation

New Insights into the Differences Between Triploid and Diploid Fujian 1 1 1 2 Oyster By Integrated Gene Expression Profiling and Proteomic Analyses Xiao-Lin Wu , Adam McQuistan , Stewart Bauck and George R Wiggans , (1)Neogen/GeneSeek, Lincoln, NE, (2)Animal Genomics and Improvement Weiwei You, Xiamen University, Xiamen, China Laboratory, ARS-USDA, Beltsville, MD

P0263: Genome Mapping, Tagging & Characterization: Cattle - Odd P0267: Genome Mapping, Tagging & Characterization: Cattle - Odd DNASTAR's Lasergene Genomics Suite for RNA-Seq Alignment and Discovering Novel Protein-Coding Genes and Long Non-Coding RNAs in Analysis of Three Bos taurus Breeds Bos taurus Matthew Keyser, DNASTAR, Inc, Madison, WI and Jackie Carville, Darren E Hagen, Deepak R Unni, Colin M Diesh and Christine G Elsik, DNAStar, Inc, Madison, WI Division of Animal Sciences, University of Missouri, Columbia, MO

224 P0268: Genome Mapping, Tagging & Characterization: Cattle - Even P0272: Genome Mapping, Tagging & Characterization: Cattle - Even New Data Mining Interfaces at the Bovine Genome Database Prediction of Causative Genomic Relationships Using Sequence Data of Five French and Danish Dairy Cattle Breeds Colin M Diesh, Deepak R Unni, Darren E Hagen, Aditi Tayal and Christine G Elsik, Division of Animal Sciences, University of Missouri, Columbia, MO Irene van den Berg, AgroParisTech, Aarhus University and INRA, Tjele, Denmark, Didier A Boichard, INRA UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, France and Mogens S Lund, Aarhus P0269: Genome Mapping, Tagging & Characterization: Cattle - Odd University, Tjele, Denmark Beef Cattle Metagenomics: Predicting Growth from the Inside Out Eric Fritz-Waters1, James M Reecy1, James E Koltes1, Alysta Markey2 and P0273: Genome Mapping, Tagging & Characterization: Cattle - Odd 1 Mary Sue Mayes , (1)Department of Animal Science, Iowa State University, Cattle Sex-Specific Recombinations and Their Genetic Control from a Ames, IA, (2)The Maschhoffs, Carlyle, IL Large Pedigree Analysis

Li Ma1, Jeffrey R O'Connell2, Paul M VanRaden3, Botong Shen1, Chuanyu P0270: Genome Mapping, Tagging & Characterization: Cattle - Even Sun4, Derek Bickhart5, John B Cole3, Daniel J Null3, Yang Da6 and George R Selection Signatures in the Cattle Genome: Lessons from Largescale Wiggans3, (1)Department of Animal and Avian Sciences, University of Resequencing of Four International Breeds Maryland, College Park, MD, (2)University of Maryland Medical School, Baltimore, MD, (3)Animal Genomics and Improvement Laboratory, ARS- Bertrand Servin, INRA, UMR1388 GenPhySe, Toulouse, France and Simon USDA, Beltsville, MD, (4)National Association of Animal Breeders, Boitard, INRA, Jouy en Josas, France Columbia, MO, (5)Animal Genomics and Improvement Laboratory, USDA- ARS, Beltsville, MD, (6)Department of Animal Science, University of Minnesota, Saint Paul, MN P0271: Genome Mapping, Tagging & Characterization: Cattle - Odd

Advances on Bos indicus (Nellore) Genomics: Integrating Genomic Selection and GWAS Information Jose Fernando Garcia, Sao Paulo State University / UNESP, Sao Paulo, Brazil, Yuri Tani Utsunomiya, Sao Paulo State University / UNESP, Sao Paolo, Brazil, Paolo Ajmone-Marsan, UNICATT, Piacenza, Italy and Tad S Sonstegard, Animal Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD

P0274: Genome Mapping, Tagging & Characterization: Cattle - Even P0277: Genome Mapping, Tagging & Characterization: Cattle - Odd Ruminant Genomics Genomic Signatures Reveal New Evidences for Selection of Important Traits in Domestic Cattle Marta Farré Belmonte1, Zhiyong Huang2, Xiaoming Yao2, Xiaodong Fang2, Jitendra Narayan3, Gancho T Slavov3, Jaebum Kim4, Xiangfeng Li2, Wei Lingyang Xu1, Derek Bickhart2, John B Cole3, Steven G Schroeder2, Jiuzhou Zhao2, Hyung-Soon Yim5, Jong Bhak6, Guojie Zhang2, Jun Wang2, Jian Ma7, Song1, Curtis P VanTassell2, Tad S Sonstegard2 and George Liu3, (1)University Harris A Lewin8 and Denis M Larkin1, (1)Royal Veterinary College, University of Maryland, College Park, MD, (2)Animal Genomics and Improvement of London, London, United Kingdom, (2)BGI, Shenzhen, China, Laboratory, USDA-ARS, Beltsville, MD, (3)Animal Genomics and (3)Aberystwyth University, Aberystwyth, United Kingdom, (4)Konkuk Improvement Laboratory, ARS-USDA, Beltsville, MD University, Seoul, South Korea, (5)Korea Institute of Ocean Science and Technology, Gyeonggi-do, South Korea, (6)UNIST, Ulsan, South Korea, (7)University of Illinois at Urbana-Champaign, Urbana, IL, (8)UC Davis, P0278: Genome Mapping, Tagging & Characterization: Cattle - Even Davis, CA Identification of Copy Number Variants in the Nellore and Angus Founders of a Mapping Population P0275: Genome Mapping, Tagging & Characterization: Cattle - Odd Yue Xing and Clare A Gill, Texas A&M University, College Station, TX Lethal Haplotype Detection and Characterization in Angus Population Jesse Hoff1, Jeremy F Taylor1, Jared Decker2 and Robert D Schnabel1, P0279: Genome Mapping, Tagging & Characterization: Cattle - Odd (1)Division of Animal Sciences, University of Missouri, Columbia, MO, A Genetic Investigation of Isle of Jersey Cattle, the Foundation of the (2)Division of Animal Science, University of Missouri, Columbia, MO Jersey Breed

1 2 3 3 Heather J Huson , Tad S Sonstegard , James Godfrey , David Hambrook , P0276: Genome Mapping, Tagging & Characterization: Cattle - Even Cari Wolfe4, George R Wiggans5, Harvey Blackburn6 and Curtis P Van 7 The Holstein Y-Chromosome: Only Two Y-Lineages Survived in North Tassell , (1)Cornell University, Ithaca, NY, (2)Animal Genomics and America Improvement Laboratory, USDA-ARS, Beltsville, MD, (3)Royal Jersey Agricultural and Horticultural Society, Trinity, United Kingdom, (4)American Wansheng Liu, Department of Animal Science, Penn State University, Jersey Cattle Association, Reynoldsburg, OH, (5)Animal Genomics and University Park, PA, Chad Dechow, The Pennsylvania State University, State Improvement Laboratory, ARS-USDA, Beltsville, MD, (6)National Center for College, PA and Xiangpeng Yue, Dept of Animal Science, Penn State Genetic Resources Preservation, USDA, Fort Collins, CO, (7)USDA-ARS- University, University Park, PA AGIL, Beltsville, MD

225 P0280: Genome Mapping, Tagging & Characterization: Cattle - Even P0283: Genome Mapping, Tagging & Characterization: Cattle - Odd A Survey of Epistasis within Angus Steers A Genome Wide Association Study of Milk Fat Globule Size and Casein Micelle Size in Canadian Holsteins Holly R Ramey1, Jared E Decker1, Robert D Schnabel2 and Jeremy F Taylor1, (1)University of Missouri, Columbia, MO, (2)Division of Animal Sciences, Allison Fleming1, Astrid Koeck1, Mehdi Sargolzaei2, Flavio Schenkel1, Milena University of Missouri, Columbia, MO Corredig3, R Ayesha Ali4 and Filippo Miglior5, (1)Centre for Genetic Improvement of Livestock, University of Guelph, Guelph, ON, Canada, (2)Alliance Boviteq, Saint-Hyacinthe, QC, Canada, (3)Department of Food P0281: Genome Mapping, Tagging & Characterization: Cattle - Odd Science, University of Guelph & Gay Lea Foods, Guelph, ON, Canada, (4)Dept Across-Breed Imputation with Whole Genome Sequence Data in Dairy of Mathematics and Statistics, University of Guelph, Guelph, ON, Canada, Cattle (5)Canadian Dairy Network & University of Guelph, Guelph, ON, Canada

1 2 2 3 Christine F Baes , Beat Bapst , Franz R Seefried , Christine Flury , Heidi Signer-Hasler3, Dorian J Garrick4, Christian Stricker5 and Birgit Gredler2, P0284: Genome Mapping, Tagging & Characterization: Cattle - Even (1)Bern University of Applied Sciences, Zug, Switzerland, (2)Qualitas AG, Mapping of Female Fertility Traits in Nordic Red Dairy Cattle Using 50K Zug, Switzerland, (3)Bern University of Applied Sciences, Zollikofen, and High Density Genotypes Switzerland, (4)Department of Animal Science, Iowa State University, Ames, IA, (5)agn-genetics, Davos, Switzerland Nina F Schulman, Terhi Iso-Touru, Miika Tapio and Johanna Vilkki, MTT Agrifood Research Finland, Jokioinen, Finland P0282: Genome Mapping, Tagging & Characterization: Cattle - Even Effect of the Reference Population Composition on Genomic Predictions of P0285: Genome Mapping, Tagging & Characterization: Cattle - Odd Small Dairy Populations Copy Number Variation in Brown Swiss Dairy Cattle Adriana García, CENID-Fisiología INIFAP, Ajuchitlán, Mexico, Felipe de Marlies A Dolezal1, Alessandro Bagnato2, Fausta Schiavini3, Enrico Santus4, Jesús Ruiz, Centro Nal de Inv en Fis y Mej Animal INIFAP, Mexico, Mexico Lars-Erik Holm5, Christian Bendixen5 and Frank Panitz5, (1)Vetmeduni and Román Ponce Sergio Ivan, CIR Pacífico Sur INIFAP, Oaxaca, Mexico Vienna, Vienna, Austria, (2)Dept VESPA, Università degli Studi di Milano, Milan, Italy, (3)Università degli Studi di Milano, Milano, Italy, (4)ANARB - Associazione Nazionale Allevatori di Razza Bruna, Bussolengo, Italy, (5)Aarhus University, Dept Molecular Biology and Genetics, Tjele, Denmark

P0286: Genome Mapping, Tagging & Characterization: Cattle - Even P0289: Genome Mapping, Tagging & Characterization: Cattle - Odd Industry Applications of Genomic Predictions for Dairy Cattle in The Genomic Variant Hotspots in Nelore Cattle Revealed By Missing Netherlands Genotypes Marianne Stoop1, Gerben De Jong2, Erik Mullaart2 and Sophie Eaglen1, Poliana F Giachetto1, Joaquim Manoel da Silva2, Luiz Otavio Campos da (1)CRV Holding, Arnhem, Netherlands, (2)CRV Holding bv, Arnhem, Silva3, Leandro C Cintra1, Samuel Rezende Paiva4, Alexandre R Caetano5 and Netherlands Michel E Beleza Yamagishi6, (1)Embrapa Informática Agropecuária, Campinas, SP, Brazil, (2)Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil, (3)Embrapa Gado de Corte, Campo Grande, MS, Brazil, P0287: Genome Mapping, Tagging & Characterization: Cattle - Odd (4)Embrapa Labex US – Secretariat of International Affairs, Fort Collins, CO, Copy Number Variants (CNV) Mapping and Association Analysis in the (5)Embrapa Recursos Genéticos e Biotecnologia, Brasilia, DF, Brazil, Autochthonous Italian Valdostana Red Pied Cattle Population (6)Embrapa Informática Agropecuária, Campinas, SAO PAULO, Brazil

1 2 2 1 Maria G Strillacci , Raphaelle TMM Prinsen , Erika Frigo , Fausta Schiavini , Maria C Cozzi2, Antonia B Samore2, Mario Vevey3, Luca Fontanesi4, Marlies P0290: Genome Mapping, Tagging & Characterization: Cattle - Even 5 6 A Dolezal and Alessandro Bagnato , (1)Università degli Studi di Milano, Transcriptional Networks Influencing Residual Feed Intake in Nelore Beef Milano, Italy, (2)Università degli Studi di Milano - Dept VESPA, Milano, Italy, Cattle (3)Associazione Nazionale Allevatori Razza Valdostana, Gressan, Italy, (4)Department of Agricultural and Food Sciences, University of Bologna, Polyana C Tizioto1, Luiz Lehmann Coutinho2, Jared E Decker3, Robert D Bologna, Italy, (5)Vetmeduni Vienna, Vienna, Austria, (6)Università degli Schnabel4, Kamila O Rosa5, Priscila SN Oliveira1, Marcela M Souza6, Gerson Studi di Milano, Milano, Italy B Mourão2, Rymer R Tullio1, Amalia S Chaves2, Dante PD Lanna2, Adhemar 7 1 4 1 Zerlotini , Mauricio A Mudadu , Jeremy F Taylor and Luciana CA Regitano , (1)Embrapa Southeast Livestock, São Carlos, Brazil, (2)ESALQ - USP, P0288: Genome Mapping, Tagging & Characterization: Cattle - Even Piracicaba, SP, Brazil, (3)University of Missouri, Columbia, MO, (4)Division Genome Wide Association Study Between CNVs and Production Traits in of Animal Sciences, University of Missouri, Columbia, MO, (5)UNESP, the Italian Brown Swiss Breed Jaboticabal, SP, Brazil, (6)UFSCAR, São Carlos, Brazil, (7)Embrapa Agricultural Informatics, Campinas, SP, Brazil Maria G Strillacci1, Erika Frigo2, Raphaelle TMM Prinsen2, Fausta Schiavini1, 2 3 4 Maria C Cozzi , Attilio Rossoni and Alessandro Bagnato , (1)Università degli Studi di Milano, Milano, Italy, (2)Università degli Studi di Milano - Dept P0291: Genome Mapping, Tagging & Characterization: Cattle - Odd VESPA, Milano, Italy, (3)ANARB - Associazione Nazionale Allevatori di Copy Number Variation of African Cattle Using Next Generation Razza Bruna, Bussolengo, Italy, (4)Università degli Studi di Milano, Milano, Sequencing at the Population Level Italy Donghyun Shin and Heebal Kim, Seoul National University, Seoul, South Korea

226 P0292: Genome Mapping, Tagging & Characterization: Cattle - Even P0295: Genome Mapping, Tagging & Characterization: Cattle - Odd Population Structure and Prevalence of Copy Number Variations within Genomic Scan to Detect Selection Footprints in African Cattle Populations the Genome of South African Nguni Cattle Adapted to Different Agro-Ecologies Magretha Diane Wang1, Kennedy Dzama2, Jasper Rees3 and Farai Catherine Zewdu Edea Bedada, Chungbuk National University, Cheongju, South Korea, Muchadeyi1, (1)ARC Biotechnology Platform, Pretoria, South Africa, Tadelle Dessie, International Livestock Research Institute, Addis Ababa, (2)University of Stellenbosch, Matieland, South Africa, (3)Agricultural Ethiopia, Hailu Dadi Melka, Konkuk University, Seoul, South Korea and Research Council, Gauteng, South Africa Kwan-Suk Kim, Chungbuk National University/Department of Animal Science, Chungcheongbuk, South Korea P0293: Genome Mapping, Tagging & Characterization: Cattle - Odd Exploring Genetic Architecture of Tick Resistance in South African Nguni P0296: Genome Mapping, Tagging & Characterization: Cattle - Even Cattle Investigating Extreme Measures of Docility and Global DNA Methylation in the Bovine Brain Ntanganedzeni Olivia Mapholi1, Azwihangwisi Maiwashe2, Oswald Matika3, Valentina Riggio3, Stephen C Bishop3, Michael D MacNeil4 and Kennedy Bonnie Cantrell1, Hannah Lachance1, Rick Funston2, Robert Weaber3 and Dzama5, (1)Agricultural Reasrch Council, Pretoria, South Africa, Stephanie McKay1, (1)University of Vermont, Burlington, VT, (2)University of (2)Agricultural Research Council, Irene, South Africa, (3)The Roslin Institute Nebraska, North Platte, NE, (3)Kansas State University, Manhattan, KS and R(D)SVS, University of Edinburgh, Midlothian, United Kingdom, (4)Delta G, Miles City, MT, (5)University of Stellenbosch, Matieland, South Africa P0297: Genome Mapping, Tagging & Characterization: Cattle - Odd

Gene Networks Involved in Tenderness and Sensory Attributes of Steaks P0294: Genome Mapping, Tagging & Characterization: Cattle - Even from Angus Beef Cattle

Impact of Genomic Information on Variance Components Estimation in 1 2 2 Small Populations with Incomplete Pedigree Information Justin W Buchanan , James M Reecy , Dorian J Garrick and Raluca Mateescu3, (1)Oklahoma State University, Stillwater, OK, (2)Department of Felipe de Jesús Ruiz, Centro Nal de Inv en Fis y Mej Animal INIFAP, Animal Science, Iowa State University, Ames, IA, (3)Dept of Animal Sciences, Mexico, Mexico, Adriana García, CENID-Fisiología INIFAP, Ajuchitlán, University of Florida, Gainesville, FL Mexico and Román Ponce Sergio Ivan, CIR Pacífico Sur INIFAP, Oaxaca, Mexico

P0298: Genome Mapping, Tagging & Characterization: Cattle - Even P0301: Genome Mapping, Tagging & Characterization: Cattle - Odd Genome Wide Association Study of Hoof Health Traits in Canadian Detecting Pleiotropic Loci for Weight, Conformation, Precocity and Holsteins Muscling Traits in Nellore Cattle (Bos indicus) Via Multi-Trait Meta- Analysis Francesca Malchiodi1, Mehdi Sargolzaei2, Astrid Koeck1, Núria Chapinal3, David Kelton4, Flavio Schenkel1 and Filippo Miglior5, (1)Centre for Genetic Yuri Tani Utsunomiya1, Anirene GT Pereira2, Tad S Sonstegard3, Carmen J Improvement of Livestock, University of Guelph, Guelph, ON, Canada, Contreras- Castillo2 and Jose Fernando Garcia4, (1)Faculdade de Ciências (2)Semex Alliance, Guelph, ON, Canada, (3)Animal Welfare Program, Agrárias e Veterinárias, UNESP - Univ Estadual Paulista, Araçatuba, Brazil, University of British Columbia, Vancouver, BC, Canada, (4)Department of (2)Universidade de São Paulo - USP, Piracicaba, Brazil, (3)Animal Genomics Population Medicine, Ontario Veterinary College, University of Guelph, and Improvement Laboratory, USDA-ARS, Beltsville, MD, (4)Sao Paulo State Guelph, ON, Canada, (5)Canadian Dairy Network & University of Guelph, University / UNESP, Sao Paulo, Brazil Guelph, ON, Canada P0302: Genome Mapping, Tagging & Characterization: Cattle - Even P0299: Genome Mapping, Tagging & Characterization: Cattle - Odd Multivariate Genome-Wide Association Study Across Six Breeds for Comparison of Metabolic Network Between Muscle and Intramuscular Tenderness and Other Carcass Traits Adipose Tissues in Hanwoo Beef Cattle Using a Systems Biology Approach Miranda L Wilson1, Robert D Schnabel2, Jeremy F Taylor2 and Jared E Woonsu Kim1, Hyesun Park1, Hyun-Jeong Lee2, Duhak Yoon3 and Seongwon Decker3, (1)University of Missouri, COLUMBIA, MO, (2)Division of Animal Seo1, (1)Department of Animal Biosystem Sciences, Chungnam National Sciences, University of Missouri, Columbia, MO, (3)University of Missouri, University, Daejeon, South Korea, (2)National Institute of Animal science, Columbia, MO Rural Development Administration, Suwon, South Korea, (3)Department of Animal Science, Kyungpook National University, Sangju, South Korea P0303: Genome Mapping, Tagging & Characterization: Cattle - Odd

RNA-Seq Data Analysis of Bovine Liver and Pituitary Transcriptome P0300: Genome Mapping, Tagging & Characterization: Cattle - Even Chandra S Pareek1, Rafal Smoczynski1, Piotr Dziuba1, Marcin Sikora1, Galanin Receptor 2 and Its Gene Interactions Affect Lean Yield and 2 3 3 Marbling in Beef Steers Marcin Golebiewski , Feng Yaping and Dibyendu Kumar , (1)Functional Genomics Lab WBiOS, Nicolaus Copernicus University in Torun, Torun, Jillian L Duncombe, Kayla M Madder and Fiona C Buchanan, University of Poland, (2)Dept of plant physiology and biotechnology, WBiOS, Nicolaus Saskatchewan, Saskatoon, SK, Canada Copernicus University in Torun, Torun, Poland, (3)Genomics Core Facility, Waksman Institute of Microbiology, New Jersey, NJ

227 P0304: Genome Mapping, Tagging & Characterization: Cattle - Even P0306: Genome Mapping, Tagging & Characterization: Cattle - Even Whole-Genome Sequencing Identifies a Homozygous Deletion Regulatory Networks for Feedlot Feed Efficiency in Angus Cattle Using Encompassing Exons 17 to 22 of the Integrin Beta 4 Gene in a Charolais Multiple Tissue Transcriptomics Calf with Junctional Epidermolysis Bullosa Kristina Weber1, Laercio Portoneto2, Alison Van Eenennaam3, Antonio Pauline Michot1, Oscar Fantini2, Régis Braques3, Aurélie Allais-Bonnet1, Reverter2 and Gonzalo Rincon1, (1)Zoetis, Kalamazoo, MI, (2)CSIRO Romain Saintilan1, Cécile Grohs4, Johanna Barbieri5, Lucie Genestout6, Coralie Agriculture Flagship, Brisbane, Queensland, Australia, (3)University of Danchin7, Jean-Marie Gourreau8, Didier A Boichard4, Didier Pin2 and Aurélien California, Davis, Davis, CA 1 Capitan , (1)UNCEIA, Paris, France, (2)Université de Lyon, VetAgro Sup, UPSP 2011-03-101 Interactions Cellules Environnement, Marcy l'Etoile, France, (3)Cabinet des vignes de la fontaine, Saint-Pierre le Moutier, France, P0307: Genome Mapping, Tagging & Characterization: Cattle - Odd (4)INRA UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, Gené's Organ Transcriptome of the Southern Cattle Fever Tick, France, (5)INRA, UMR444 LGC - GeT-PlaGe Genomics Facility, Castanet- Rhipicephalus microplus Tolosan, France, (6)LABOGENA DNA, Jouy-en-Josas, France, (7)Institut de 1 2 1 1 l’Elevage, Paris, France, (8)Unité de Pathologie du Bétail, Ecole Nationale Jason P Tidwell , Donald Thomas , Christopher Vitek , Robert Gilkerson , 3 1 Vétérinaire d'Alfort, Maison-Alfort, France Adalberto A Pérez de León and Matthew Terry , (1)University of Texas-Pan American, Edinburg, TX, (2)USDA-ARS Cattle Fever Tick Research

Laboratory, Edinburg, TX, (3)USDA-ARS Knipling-Bushland US Livestock P0305: Genome Mapping, Tagging & Characterization: Cattle - Odd Insects Research Laboratory and Veterinary Pest Genomics Center, Kerrville, Feedlot Performance and Immunology of Beef Steers Fed a Low Vitamin TX A Diet and Selected for ADH1C Genotype Kayla M Madder1, Chris D Luby2, John J McKinnon1, G William Torres3 and P0308: Genome Mapping, Tagging & Characterization: Cattle - Even Fiona C Buchanan1, (1)University of Saskatchewan, Saskatoon, SK, Canada, Genomic Organization and Expression of the Bovine NK-Lysin Gene (2)Western College of Veterinary Medicine, Saskatoon, SK, Canada, Family (3)Cattleland Feedyards Ltd, Strathmore, AB, Canada Junfeng Chen1, Polyana C Tizioto2, Jeremy F Taylor3, Maika Malig4, John 5 1 Huddleston and James Womack , (1)Texas A&M University, College Station, TX, (2)Embrapa Southeast Livestock, São Carlos, Brazil, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)University of Washington, Seattle, WA, (5)Department of Genome Sciences, Howard Hughes Medical Institute, University of Washington, Seattle, WA

P0309: Genome Mapping, Tagging & Characterization: Cattle - Odd P0312: Genome Mapping, Tagging & Characterization: Cattle - Even Genome Wide Association Study Identifies Loci Associated with Mastitis Susceptibility and Molecular Mechanisms Underlying Bovine Respiratory Antibiotic Therapy Phenotypes Following Experimental Challenge with Disease Complex Streptococcus Uberis Polyana C Tizioto1, Jae Woo Kim1, Robert D Schnabel2, Laurel Gershwin3, Lydia J Siebert, The University of Tennessee, Knoxville, Knoxville, TN Alison Van Eenennaam3, Rachel Toaff-Rosenstein3, Holly L Neibergs4, the Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team1 and Jeremy F Taylor2, (1)University of Missouri, Columbia, P0310: Genome Mapping, Tagging & Characterization: Cattle - Even MO, (2)Division of Animal Sciences, University of Missouri, Columbia, MO, Transcriptomics and Systems Biology of High Altitude Disease in Angus (3)University of California, Davis, Davis, CA, (4)Washington State University, Cattle Pullman, WA

1 2 3 3 Angela Cánovas , Rebecca Cockrum , Dale Brown , Suzette Riddle , Joe M Neary4, Tim Holt2, Greta Krafsur2, Frank Garry2, Juan F Medrano1, Alma P0313: Genome Mapping, Tagging & Characterization: Cattle - Odd Islas-Trejo1, Richard M Enns2, Scott E Speidel2, Kurt Stenmark3 and Milton 2 Changes in miRNA in Response to Infection with Bovine Viral Diarrhoea Thomas , (1)University of California-Davis, Davis, CA, (2)Colorado State Virus in Cattle University, Fort Collins, CO, (3)University of Colorado-Denver, Denver, CO, (4)Texas Tech University, Lubbock, TX John Williams1, Andrea Viglino2, Andrea Trovato2, Francesca Dilda2, Daniela 2 2 Iamartino and Chiara Gorni , (1)Fondazione Parco Tecnologico Padano, Lodi, Italy, (2)Parco Tecnologico Padano, Lodi, Italy P0311: Genome Mapping, Tagging & Characterization: Cattle - Odd

An Across-Breed Genome Wide Association Analysis of Susceptibility to Paratuberculosis in Dairy Cattle P0314: Genome Mapping, Tagging & Characterization: Cattle - Even Characterization of Alleles Associated with White Spotting in North Ahmed M A Sallam, University of Wisconsin-Madison, Madison, WI American Domestic Yaks (Bos grunniens)

Jenifer Cruickshank and Julia M Yurco, State University of New York at Oswego, Oswego, NY

228 P0315: Genome Mapping, Tagging & Characterization: Cattle - Odd P0318: Genome Mapping, Tagging & Characterization: Equine - Even Molecular Cytogenetics of the Minute chromosome Syndrome in Alpacas Selection of Tagging SNPs and Imputation Efficiency of the 670K Commercial SNP Chip Terje Raudsepp, Texas A&M University, College Station, TX, Felipe Avila, Department of Veterinary Population Medicine, University of Minnesota, St Rob Schaefer, Computational Biology & Functional Genomics Laboratory, Paul, MN, Malorie P Baily, Texas A&M University, College Station, TX, Minneapolis, MN, Ludovic Orlando, Centre for GeoGenetics, Natural History College Station, TX, Andrew Merriwether, Binghamton University, Vestal, Museum of Denmark, University of Copenhagen, Copenhagen, Denmark, JR NY, Binghamton, NY and Michelle Kutzler, Department of Animal and Mickelson, University of Minnesota, St Paul, MN and ME McCue, Dept of Rangeland SciencesOregon State University, Corvallis, OR Veterinary Population Medicine, Univ of MN, St Paul, MN

P0316: Genome Mapping, Tagging & Characterization: Cattle - Even P0319: Genome Mapping, Tagging & Characterization: Equine - Odd New Insights into QTL Region on BTA14 Using Gayal (Bos frontalis) and Towards a High-Standard Reference Genome of Horses with Whole Bangladeshi Indicine Cattle Breeds Genome Physical Mapping and the Integration of Genome Sequences

Kwan Suk Kim, Chungbuk National University/Department of Animal Bin LIU1, Alex Hastie2, Zhongwei Qiu1, Aladaer Qi1, Gemenggul Muhantay3, Science, Cheongju, South Korea, Md Rasel Uzzaman, Chungbuk National Saki Chan2, Jianchao Wang1, Xue Liang1, Mengjie Qiu1, Songnian Hu4, University,, Cheongju, South Korea and Zewdu Edea Bedada, Chungbuk Xiaojun Wang5, Lingyan Li6, An Li7, Hong-Bin Zhang8, Donald Miller9, National University, Chungcheongbuk-do, South Korea Douglas Antczak9, Ted Kalbfleisch10, Han Cao2 and Ernest Bailey11, (1)Center of Systematic Genomics, Xinjiang Institute of Ecology and Geography/Institute of Oceanology, Chinese Academy of Sciences, Urumqi, Xinjiang, China, P0317: Genome Mapping, Tagging & Characterization: Equine - Odd (2)BioNano Genomics, San Diego, CA, (3)Tarim University, Alar, China, Discordant SNP Genotyping Between the Illumina Equine54K and (4)Beijing Institute of Genomics, Chinese Academy of Science, Beiing, China, 75KSNP Platforms Causing False Positive Associations (5)Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China, (6)Beijing Vocational College of Agriculture, Beijing, Sian Ann Durward-Akhurst, University of Minnesota, St Paul, MN, Stephanie J China, (7)Xinjiang Vocational College of Agriculture, Changji, China, Valberg, University of Minnesota, St Paul, MN and Carrie J Finno, University (8)Texas A&M University, College Station, TX, (9)Cornell University, Ithaca, of California-Davis, Davis, CA NY, (10)Center for Environmental Genomics and Integrative Biology, University of Louisville, Louisville, KY, (11)University of Kentucky, Lexington, KY

P0320: Genome Mapping, Tagging & Characterization: Equine - Even P0323: Genome Mapping, Tagging & Characterization: Equine - Odd Work Toward EquCab3: A New Reference Genome Sequence for the Evolutionary Genomics of Equine Species: A History of Adaptation, Gene Domestic Horse Flow, and Expansion out of the Americas Theodore S Kalbfleisch, University of Louisville, Louisville, KY, Ludovic Hákon Jónsson1, Mikkel Schubert2, Andaine Seguin-Orlando3, Aurélien Orlando, Centre for GeoGenetics, Natural History Museum of Denmark, Ginolhac1, Lillian Petersen4, Matteo Fumagalli5, Anders Albrechtsen6, Bent University of Copenhagen, Copenhagen, Denmark and James N MacLeod, Petersen7, Thorfinn S Korneliussen1, Julia Vilstrup8, Teri Lear9, Jennifer Department of Veterinary Science, University of Kentucky, Lexington, KY Myka9, Judith Lundquist9, Donald Miller10, Ahmed H Ahmed11, Saleh A 11 12 13 14 Alquraishi , Khaled AS AL-Rasheid , Julia Stagegaard , Günter Strauss , Mads Frost Bertelsen15, Thomas Sicheritz-Ponten7, Douglas Antczak10, Ernest P0321: Genome Mapping, Tagging & Characterization: Equine - Odd Bailey9, Rasmus Nielsen16, Eske Willerslev8 and Ludovic Orlando2, (1)Centre Genomic Signatures of Selection in the American Quarter Horse for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark, (2)Centre for GeoGenetics, Natural Felipe Avila, Department of Veterinary Population Medicine, University of History Museum of Denmark, University of Copenhagen, Copenhagen, Minnesota, St Paul, MN, Jessica L Petersen, University of Nebraska - Lincoln, Denmark, (3)Danish National High-throughput DNA Sequencing Centre, Lincoln, NE, JR Mickelson, University of Minnesota, St Paul, MN and ME Copenhagen, Denmark, (4)National High-throughput DNA Sequencing Centre, McCue, Dept of Veterinary Population Medicine, Univ of MN, St Paul, MN Copenhagen, Denmark, (5)Departments of Integrative Biology and Statistics, Berkeley, CA, (6)Bioinformatics Centre, University of Copenhagen, Copenhagen, Denmark, (7)Center for Biological Sequence Analysis, Lyngby, P0322: Genome Mapping, Tagging & Characterization: Equine - Even Denmark, (8)Centre for GeoGenetics, Natural History Museum of Denmark, Sequencing, de novo Assembly and Functional Analysis of the Male Copenhagen, Denmark, (9)Maxwell H Gluck Equine Research Center, Specific Region of the Horse Y Chromosome Veterinary Science Department, University of Kentucky, Lexington, KY,

1 2 3 4 (10)Cornell University, Ithaca, NY, (11)Zoology Department, College of Terje Raudsepp , Jan E Jane$ka , Nandina Paria , Pranab J Das , Daniel Science, King Saud University, Riyadh, Saudi Arabia, (12)Zoology Winston Bellott5, Jennifer F Hughes5, David C Page5 and Bhanu P 6 Department, College of Science, Riyadh, Saudi Arabia, (13)Ree Park-Ebeltoft Chowdhary , (1)Texas A&M University, College Station, TX, (2)Duquesne Safari, Ebeltoft, Denmark, (14)Tierpark Berlin-Friedrichsfelde GmbH, Berlin, University, Biological Sciences, Pittsburgh, PA, (3)Sarah M and Charles E Germany, (15)Copenhagen Zoo, Frederiksberg, Denmark, (16)Department of Seay Center for Musculoskeletal Research, Texas Scottish Rite Hospital for Integrative Biology and Statistics, Berkeley, CA Children, Dallas, TX, (4)National Research Centre on Yak (ICAR), Dirang, India, (5)Whitehead Institute, Howard Hughes Medical Institute, & Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, (6)Qatar University, Doha, Qatar

229 P0324: Genome Mapping, Tagging & Characterization: Equine - Even P0325: Genome Mapping, Tagging & Characterization: Equine - Odd Illuminating the Genetic Foundation and Cost of Horse Domestication Large-Scale Mitochondrial Genome Analysis of the Modern Horses: with Ancient DNA Perspectives on Their Domestication History Mikkel Schubert1, Hákon Jonsson2, Dan Chang3, Clio Der Sarkissian2, Luca SH Yoon, Department of Agricultural Biotechnology and Research Institute for Ermini2, Aurélien Ginolhac2, Anders Albrechtsen4, Isabelle Dupanloup5, Agriculture and Life Sciences, Seoul National University, Seoul, South Korea, Adrian Foucal5, Bent Petersen6, Matteo Fumagalli7, Maanasa Raghavan8, Seoae Cho, C & K Genomics, Seoul, South Korea and Heebal Kim, Seoul Andaine Seguin-Orlando9, Thorfinn S Korneliussen2, Ahmed Missael Vargas National University, Seoul, South Korea 8 8 10 11 Velazquez , Jesper Stenderup , Cindi A Hoover , Carl-Johan Rubin , Ahmed H Ahmed12, Saleh A Alquraishi12, Khaled AS AL-Rasheid13, David E MacHugh14, Theodore S Kalbfleisch15, James N MacLeod16, Edward M P0326: Genome Mapping, Tagging & Characterization: Equine - Even Rubin10, Thomas Sicheritz-Ponten6, Leif Andersson17, Michael Hofreiter18, Population History and Structure of Modern Horse Breeds Thomas Marques-Bonet19, M Thomas P Gilbert2, Rasmus Nielsen20, Laurent Excoffier5, Eske Willerslev8, Beth Shapiro21 and Ludovic Orlando1, (1)Centre Lynsey K Whitacre, Division of Animal Sciences, University of Missouri, for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Columbia, MO and Jared E Decker, University of Missouri, Columbia, MO Copenhagen, Denmark, (2)Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen K, Denmark, (3)Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, Santa Cruz, P0327: Genome Mapping, Tagging & Characterization: Equine - Odd CA, (4)Bioinformatics Centre, University of Copenhagen, Copenhagen, Denmark, SERPINB11 Associated with Novel Hoof Specific Phenotype in Connemara (5)Swiss Institute of Bioinformatics, Lausanne, Switzerland, (6)Center for Biological Ponies Sequence Analysis, Lyngby, Denmark, (7)UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, London, United Danika Bannasch1, Carrie J Finno2, Carlynn Stevens1, Amy Young3, Verena Kingdom, (8)Centre for GeoGenetics, Natural History Museum of Denmark, Affolter1, Nikhil Joshi1 and Sheila Ramsey4, (1)University of California Davis, Copenhagen, Denmark, (9)Danish National High-throughput DNA Sequencing Centre, Davis, CA, (2)University of California-Davis, Davis, CA, (3)University of Copenhagen, Denmark, (10)DOE Joint Genome Institute, Walnut Creek, CA, (11)Science for Life Laboratory, Department of Medical Biochemistry and California, Davis, Davis, CA, (4)Massey University, Palmerston North, New Microbiology, Uppsala University, Uppsala, Sweden, (12)Zoology Department, Zealand College of Science, King Saud University, Riyadh, Saudi Arabia, (13)Zoology Department, College of Science, Riyadh, Saudi Arabia, (14)University College Dublin, Dublin, Ireland, (15)University of Louisville, Louisville, KY, (16)Department P0328: Genome Mapping, Tagging & Characterization: Equine - Even of Veterinary Science, University of Kentucky, Lexington, KY, (17)Uppsala Genomic Polymorphism in Six Diverse Horse Breeds University, Uppsala, Sweden, (18)Department of Biology, University of York, York, United Kingdom, (19)ICREA at the Institut de Biologia Evolutiva (Univ Pompeu Mohammed A Al Abri1, Sara E Kalla2, Douglas Antczak1, Nathan B Sutter3 Fabra/CSIC), Barcelona, Spain, (20)Department of Integrative Biology and Statistics, and Samantha A Brooks4, (1)Cornell University, Ithaca, NY, (2)Clinical Berkeley, CA, (21)Department of Ecology and Evolutionary Biology, Santa Cruz, CA Sciences, Cornell University, Ithaca, NY, (3)La Sierra University, Department of Biology, Riverside, CA, (4)University of Florida, Gainesville, FL

P0329: Genome Mapping, Tagging & Characterization: Equine - Odd P0333: Genome Mapping, Tagging & Characterization: Equine - Odd Genome Wide Association of Temperament Variation in the Tennessee Involvement of CNVs in Equine Cryptorchidism Walking Horse Sharmila Ghosh1, Pranab J Das2, Justin Jaxtheimer1, Stephanie Grissom1, Elizabeth A Staiger, Cornell University, Ithaca, NY, Julie D Albright, Carolyn Arnold1, Dickson Varner1, Bhanu P Chowdhary3 and Terje Raudsepp1, University of Tennessee, Knoxville, TN and Samantha A Brooks, University of (1)Texas A&M University, College Station, TX, (2)National Research Centre Florida, Gainesville, FL on Yak (ICAR), Dirang, India, (3)Qatar University, Doha, Qatar

P0330: Genome Mapping, Tagging & Characterization: Equine - Even P0334: Genome Mapping, Tagging & Characterization: Equine - Even Genome-Wide Association Study of Shivers in Clydesdale Horses Unique Patterns of Gene Expression in Equine Articular Chondrocytes Jessica L Petersen, University of Nebraska - Lincoln, Lincoln, NE, Carrie J Emma N Adam1, Yan Huang2, Stephen Coleman3, Joshua W Lambert4, Finno, University of California-Davis, Davis, CA and Stephanie J Valberg, Arnold J Stromberg4, Jinze Liu2 and James N MacLeod1, (1)Department of University of Minnesota, St Paul, MN Veterinary Science, University of Kentucky, Lexington, KY, (2)Department of Computer Science, University of Kentucky, Lexington, KY, (3)Department of Microbiology, Immunology and Pathology, Colorado State University, Fort P0331: Genome Mapping, Tagging & Characterization: Equine - Odd Collins, CO, (4)Department of Statistics, University of Kentucky, Lexington, Differential Gene Expression of Novel Lamellar Transcripts in Healthy KY and Laminitic Horses Heather M Holl1, Hannah L Galantino-Homer2 and Samantha A Brooks1, P0335: Genome Mapping, Tagging & Characterization: Equine - Odd (1)University of Florida, Gainesville, FL, (2)University of Pennsylvania, Gene Loci for Recurrent Exertional Rhabdomyolysis in Thoroughbreds Philadelphia, PA and Standardbreds

Samantha K Beeson1, JR Mickelson1, Matthew M Binns2, Sarah Blott3, P P0332: Genome Mapping, Tagging & Characterization: Equine - Even Caputo4, CM Isgren5, A Moore6, RJ Piercy7, J Swinburne3, M Vaudin3 and ME Skeletal Muscle Gene Expression Profile in Type 1 Polysaccharide Storage McCue8, (1)University of Minnesota, St Paul, MN, (2)Equine Analysis Myopathy Systems, LLC, Midway, KY, (3)Animal Health Trust, Kentford, United Kingdom, (4)Paul Caputo, DVM, Parkland, FL, (5)The Norwegian School of 1 1 1 2 Raffaella Teixeira , JR Mickelson , Stephanie J Valberg and ME McCue , Veterinary Science, Olso, Norway, (6)Moore Equine Services, Ontario, ON, (1)University of Minnesota, St Paul, MN, (2)Dept of Veterinary Population Canada, (7)The Royal Veterinary College, London, England, (8)Dept of Medicine, Univ of MN, St Paul, MN Veterinary Population Medicine, Univ of MN, St Paul, MN

230 P0336: Genome Mapping, Tagging & Characterization: Equine - Even P0339: Genome Mapping, Tagging & Characterization: Equine - Odd Heritability of Recurrent Exertional Rhabdomyolyis in Thoroughbred and Immune Response Phenotypes for Equine Viral Arteritis (EVA) Standardbred Racehorses Associated with Alleles of CXCL16 EM Norton1, JR Mickelson2, MM Binns3, S Blott4, P Caputo5, CM Isgren6, A Ernest Bailey1, Yun Young Go2, John Edmund Eberth1, Kathy Shuck1, Frank Moore7, RJ Piercy8, J Swinburne4, M Vaudin4 and ME McCue9, (1)University Cook1, Bora Nam1, Theodore S Kalbfleisch3, Peter Timoney1 and Udeni B R of Minnesota College of Veterinary Medicine, White Bear Lake, MN, Balasuriya1, (1)University of Kentucky, Lexington, KY, (2)Divisoni of Drug (2)University of Minnesota, St Paul, MN, (3)Equine Analysis Systems, LLC, Discovery Research, Daejon, South Korea, (3)University of Louisville, Midway, KY, (4)Animal Health Trust, Kentford, United Kingdom, (5)Paul Louisville, KY Caputo, DVM, Parkland, FL, (6)The Norwegian School of Veterinary Science, Olso, Norway, (7)Moore Equine Services, Ontario, ON, Canada, (8)The Royal Veterinary College, London, England, (9)Dept of Veterinary Population P0340: Genome Mapping, Tagging & Characterization: Equine - Even Medicine, Univ of MN, St Paul, MN Targeted SNP Testing of Horses Bearing Sarcoid Tumors

1 2 1 1 Hannah J Lynaugh , Ethan Hefner , Donald Miller , Maja Al-Jabri , Jordan P0337: Genome Mapping, Tagging & Characterization: Equine - Odd Gless1, Ram Singh1, Maria Bateson1, Elizabeth A Staiger1, Samantha A 3 1 1 CYP7A1 Is Significantly Up-Regulated in Spinal Cord from Horses Brooks , Elizabeth Buckles and Douglas Antczak , (1)Cornell University, Affected with Equine Neuroaxonal Dystrophy (NAD) Ithaca, NY, (2)North Carolina State University, Raleigh, NC, (3)University of Florida, Gainesville, FL 1 2 2 Carrie J Finno , Stephanie J Valberg and JR Mickelson , (1)University of California-Davis, Davis, CA, (2)University of Minnesota, St Paul, MN P0341: Genome Mapping, Tagging & Characterization: Equine - Odd

Genetic Investigation of Limbal Squamous Cell Carcinoma in Haflinger P0338: Genome Mapping, Tagging & Characterization: Equine - Even Horses

A Non-Synonymous Change in Latrophilin-3 Associated with Equine 1 2 2 2 1 Degenerative Myeloencephalopathy Rebecca Bellone , Suellen Sa , Mindy Huynh , Rhianna Seferian , Jiayin Liu and Mary Lassaline1, (1)University of California-Davis, Davis, CA, Christian J Posbergh1, Thomas J Divers1, Geoff E Pollott2 and Samantha A (2)University of Tampa, Tampa, FL 3 Brooks , (1)Cornell University, Ithaca, NY, (2)The Royal Veterinary College, London, United Kingdom, (3)University of Florida, Gainesville, FL

P0342: Genome Mapping, Tagging & Characterization: Equine - Even P0344: Genome Mapping, Tagging & Characterization: Swine - Even Investigation and Validation of Variants Underlying Osteochondrosis Risk Genomics Meets Metabolomics: Developing a Systems Biology Approach in the Horse to Understand the Genetic Mechanisms Affecting Complex Traits in Pigs ME McCue1, AM McCoy1, Sigrid Lykkjen2, Sarah Ralston3 and JR Luca Fontanesi1, Samuele Bovo2, Gianluca Mazzoni1, Giuseppina Schiavo1, Mickelson4, (1)Dept of Veterinary Population Medicine, Univ of MN, St Paul, Antonia Bianca Samorè1, Flaminia Fanelli3, Francesca Bertolini1, Emilio MN, (2)Norwegian School of Veterinary Science, Oslo, Norway, (3)Rutgers Scotti1, Giuliano Galimberti4, Daniela Giovanna Calò4, Marco Mezzullo3, Pier University, New Brunswick,, NJ, (4)University of Minnesota, St Paul, MN Luigi Martelli5, Rita Casadio5, Stefania Dall'Olio1 and Uberto Pagotto3, (1)Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy, (2)Department of Agricultural Sciences, University of Bologna, P0343: Genome Mapping, Tagging & Characterization: Equine - Odd Bologna, Italy, (3)Department of Medical and Surgical Sciences, The Recurrent Airway Obstruction Restricted Lung Transcriptome Endocrynology Unit, University of Bologna, Bologna, Italy, (4)Department of Identifies Molecular Signatures of Airway Hyperresponsiveness and Statistical Sciences, University of Bologna, Bologna, Italy, (5)Biocomputing Neutrophilic Inflammation Group, University of Bologna, Bologna, Italy

1 2 1 Lauren Ashley Bright , Mark Arick II , Santosh Kumar TK , Savannah Mack1, Andy Perkins3, Courtney Hunter1, Alison Eddy1, Andrew Claude1, P0345: Genome Mapping, Tagging & Characterization: Swine - Odd Nisma Mujahid1, Michael Brashier1, Bindu Nanduri4, Shane C Burgess5 and 1 Variable Selection in Whole-Genome Association Studies Using Lasso- Cyprianna Swiderski , (1)Department of Clinical Sciences, Mississippi State, Based Techniques MS, (2)Institute for Genomics, Biocomputing and Biotechnology, Mississippi State, MS, (3)Department of Computer Science and Engineering, Mississippi Tianfu Yang, Graham S Plastow and Zhiquan Wang, University of Alberta, State, MS, (4)Department of Basic Sciences, Mississippi State, MS, (5)College Edmonton, AB, Canada of Agriculture and Life Sciences, University of Arizona, AZ P0346: Genome Mapping, Tagging & Characterization: Swine - Even Genetic Variation in microRNAs’ Seed Regions Contribute to Different Clinical Syndromes to HP-PRRSV Infection Across Pig Breeds Jia Li, China Agricultural University, Beijing, China

231 P0347: Genome Mapping, Tagging & Characterization: Swine - Odd P0350: Genome Mapping, Tagging & Characterization: Swine - Even Improving Porcine Transcriptome Annotation By Integrating EST, Genome Wide Analysis of Porcine miRNA Editing mRNAs and Whole Blood RNA-Seq Data Anoop Arya1, Richard PMA Crooijmans2, Elisabetta Giuffra3, Martien AM Haibo Liu, Bioinformatics and Computational Biology Program, Department Groenen2 and Ole Madsen2, (1)INRA, AgroParisTech, UMR1313 Animal of Animal Science, Iowa State University, Ames, IA and Christopher K Genetics and Integrative Biology, Jouy-en-Josas, France; CEA, DSV, IRCM, Tuggle, Iowa State University, Ames, IA SREIT, LREG,, Jouy-En-Josas, France, (2)Wageningen University, Wageningen, Netherlands, (3)INRA, UMR de Génétique Animale et Biologie Intégrative, Jouy-en-Josas, France P0348: Genome Mapping, Tagging & Characterization: Swine - Even

Genome-Wide Association Analyses of Biological Responses to Heat Stress in Pigs P0351: Genome Mapping, Tagging & Characterization: Swine - Odd Multi-Population Genomic Selection in Pigs Max F Rothschild1, Kwan Suk Kim2, Eui-Soo Kim1, Jacob T Seibert1, Aileen F Keating1, Sangwook Kim3, Jason W Ross1 and Lance H Baumgard1, (1)Iowa Renata Veroneze1, John Bastiaansen2, Marcos Soares Lopes3, Barbara State University, Ames, IA, (2)Chungbuk National University/Department of Harlizius3, Paulo S Lopes4, Egbert F Knol3, Simone EF Guimarães4 and Johan Animal Science, Cheongju, South Korea, (3)Chungbuk National University, van Arendonk2, (1)Universidade Federal de Viçosa and Wageningen Cheongju, South Korea University, Viçosa, Brazil, (2)Wageningen University, Animal Breeding and Genomics Centre, Wageningen, Netherlands, (3)TOPIGS Norsvin Research Center, Beuningen, Netherlands, (4)Universidade Federal de Viçosa, Viçosa, P0349: Genome Mapping, Tagging & Characterization: Swine - Odd Brazil Production of GGTA1 Targeted Pigs Using TALEN-Mediated Genome Editing Technology P0352: Genome Mapping, Tagging & Characterization: Swine - Even Jungtaek Kang, GIBLUE biotechnology research institute, Seoul, South Annotation-Based Whole Genomic Prediction and Selection: An Korea and Kwang-Wook Park, Sunchon National University, Sunchon, South Application to Feed Efficiency and Growth Traits in Pigs Korea 1 2 3 3 Haja N Kadarmideen , Duy N Do , Luc LLG Janss and Just Jensen , (1)University of Copenhagen, Frederiksberg C, Denmark, (2)University of Copenhagen, Frederiksberg, Denmark, (3)Aarhus University, Tjele, Denmark

P0353: Genome Mapping, Tagging & Characterization: Swine - Odd P0356: Genome Mapping, Tagging & Characterization: Swine - Even The SLA Haplotype Analysis in Yucatan Miniature Pigs in Korea Analyzing the Muscle Transcriptome and the Splicing Variants of Pigs with Divergent Lipid Phenotypes Through RNA-Seq Dongwon Seo1, Nu Ri Choi1, Kimyung Choi2, Woo-Young Jung3 and Jun Heon Lee1, (1)Department of Animal Science and Biotechnology, College of Taina Cardoso1, Marcel Amills1, Oriol Canela2, Rayner Gonzalez1, Raquel Agriculture and Life Sciences, Chungnam National University, Daejeon, South Quintanilla2 and Angela Canovas1, (1)Center for Research in Agricultural Korea, (2)Optipharm Solution Inc, Chungbuk, South Korea, (3)National Genomics - University Autonomus of Barcelona, Bellaterra, Spain, (2)Center Agricultural Cooperative Federation, Seosan, South Korea for Research & Technology, Food & Agriculture, Caldes de Montbui, Spain

P0354: Genome Mapping, Tagging & Characterization: Swine - Even P0357: Genome Mapping, Tagging & Characterization: Swine - Odd Genome Wide Distributions and Functional Characterization of Copy Whole Genome-Wide Detection of Selection Signatures in Korean Native Number Variations Between Chinese and Western Pigs Black Pig from Jeju Island Hongyang Wang1, Chao Wang2, Kui Yang2, Jing Liu2, Yu Zhang2, Yanan Jaemin Kim1, Heebal Kim1 and Seoae Cho2, (1)Seoul National University, Wang3, Xuewen Xu2, Zhihua Jiang4 and Bang Liu2, (1)Huazhong Agricutural Seoul, South Korea, (2)C & K Genomics, Seoul, South Korea University, Wuhan, China, (2)Huazhong Agricultural University, Wuhan, China, (3)Iowa State University, Ames, IA, (4)Washington State University, Pullman, WA P0358: Genome Mapping, Tagging & Characterization: Swine - Even Intestinal Microbiota Profile of Pigs With and Without In-Feed Antibiotics P0355: Genome Mapping, Tagging & Characterization: Swine - Odd Mauricio Egidio Cantao1, Caroline Pissetti2, Jalusa Deon Kich1, Sara Zarth3, 1 2 Twenty Years of Artificial Directional Selection Have Shaped the Genome Nelson Mores and Marisa Cardoso , (1)Embrapa Swine and Poultry, of the Italian Large White Pig Breed Concordia, Brazil, (2)University of Rio Grande do Sul, Porto Alegre, Brazil, (3)Santa Catarina State University, Lages, Brazil 1 1 2 Luca Fontanesi , Giuseppina Schiavo , Giuliano Galimberti , Daniela Giovanna Calò2, Emilio Scotti1, Antonia Bianca Samorè1, Vincenzo Russo1, Maurizio Gallo3 and Luca Buttazzoni4, (1)Department of Agricultural and Food P0359: Genome Mapping, Tagging & Characterization: Swine - Odd Sciences, University of Bologna, Bologna, Italy, (2)Department of Statistical Origin and Phylogenetic Status of the Local Ashanti Dwarf Pig (ADP) of Sciences, University of Bologna, Bologna, Italy, (3)Associazione Nazionale Ghana Based on Evidence from mtDNA Analysis, MC1R and Y- Allevatori Suini (ANAS), Roma, Italy, (4)Consiglio per la Ricerca e la Chromosome Haplotypes Sperimentazione in Agricoltura, Centro di Ricerca per la Produzione delle Carni e il Miglioramento Genetico, Roma, Italy Richard Osei-Amponsah, University of Ghana, Legon, Accra, Ghana

232 P0360: Genome Mapping, Tagging & Characterization: Swine - Even P0363: Genome Mapping, Tagging & Characterization: Swine - Odd Association Analyses Between Missense Variation at 70 Candidate Genes Gut Microbiota in Swine: Composition, Genetic Parameters, and Links and Porcine Lipid Metabolism Traits with Immunity and Production Traits Rayner Gonzalez1, Angela Canovas2, Arianna Manunza3, Sergi Beltran Jordi Estellé1, Núria Mach1, Catherine Larzul2, Mustapha Berri3, Yuliaxis Beltran4, Raul Tonda4, Raquel Quintanilla5 and Marcel Amills1, (1)Center for Ramayo-Caldas1, Yvon Billon4, Joël Doré5, Patricia Lepage5 and Claire Rogel- Research in Agricultural Genomics - University Autonomus of Barcelona, Gaillard1, (1)INRA, UMR1313 Animal Genetics and Integrative Biology, Bellaterra, Spain, (2)Center for Research in Agricultural Genomics - University Jouy-en-Josas, France, (2)INRA, UMR1388 GENPHYSE, Castanet-Tolosan, Autonomus of Barcelona, Barcelona, Spain, (3)Center for Research in France, (3)INRA, UMR1282 ISP, Nouzilly, France, (4)INRA, UE1372 Agricultural Genomics, Bellaterra, Spain, (4)Centre Nacional d'Anàlisi GenESI, Saint-Pierre-d'Amilly, France, (5)INRA, UMR MICALIS, Jouy-en- Genòmica, Barcelona, Spain, (5)IRTA, Caldes de Montbui, Spain Josas, France

P0361: Genome Mapping, Tagging & Characterization: Swine - Odd P0364: Genome Mapping, Tagging & Characterization: Swine - Even Genetic Analysis of the Response to ACTH in Pigs, Relationships with Deep Sequencing of Transcriptome Profiling of GSTM2 Knock-Down Robustness Traits Swine Testis Cell

Pierre Mormede1, Elena Terenina1, Laure Gress1, Yvon Billon2, Stephane Yuqi Lv, Yongqiang Zhou and Zhuqing Ren, Key Laboratory of Swine Ferchaud3 and Catherine Larzul4, (1)INRA (Institut National de la Recherche Genetics and Breeding of Ministry of Agriculture & Key Laboratory of Agronomique), Castanet-Tolosan, France, (2)INRA, UE1372 GenESI, Saint- Agriculture Animal Genetics, Breeding and Reproduction of Ministry of Pierre-d'Amilly, France, (3)INRA (Institut National de la Recherche Education, College of Animal Science, Huazhong Agricultural University, Agronomique), Saint-Pierre-d'Amilly, France, (4)INRA, UMR1388 Wuhan, China GENPHYSE, Castanet-Tolosan, France P0365: Genome Mapping, Tagging & Characterization: Swine - Odd P0362: Genome Mapping, Tagging & Characterization: Swine - Even Genome-Wide DNA Methylation Profiles of Fast-Growing and Slow- DEG Analyses Identifie Differences in Testicular Tissues of Large White Growing Weaning Piglets and Luchuan Pigs Woori Kwak1, Seoae Cho2 and Heebal Kim1, (1)Seoul National University, Yao Liu, Jialian Li, Xiaolei Liu and Bin Fan, Huazhong Agricultural Seoul, South Korea, (2)C & K Genomics, Seoul, South Korea University, Wuhan, China

P0366: Genome Mapping, Tagging & Characterization: Swine - Even P0369: Genome Mapping, Tagging & Characterization: Swine - Odd Beyond GWAS: A Gene-Transcription Factor Network for Number of MiR-195/497 Inhibited Myoblast Proliferation through Targeting Igf1r, Teats in Pigs Insr and Cyclin Related Genes and Were Negatively Transcriptional Regulated By NF-Kb Lucas L Verardo1, Simone EF Guimarães1, Fabyano F Silva1, Matthew Kelly2, Ole Madsen3, Marcos S Lopes3, Paulo S Lopes1 and Egbert Knol4, Xinyun Li, Huazhong Agricultural University, College of Animal Science, (1)Universidade Federal de Viçosa, Viçosa, Brazil, (2)Queensland Alliance for Wuhan, China Agriculture & Food Innovation, St Lucia, Australia, (3)Wageningen University, Wageningen, Netherlands, (4)Topigs Norsvin, Beuningen, Netherlands P0370: Genome Mapping, Tagging & Characterization: Swine - Even

A Study of Vertebra Number in Pigs Confirms the Effect of Vertnin and P0367: Genome Mapping, Tagging & Characterization: Swine - Odd Reveals Additional QTL Genomic Analysis of the Interaction Between Energy Intake and SNP Genotypes on Age at Puberty Gary A Rohrer, Dan Nonneman and Jim F Schneider, USDA, ARS, USMARC, Clay Center, NE Melanie Trenhaile, Stephen D Kachman, Phillip S Miller, Rodger K Johnson and Daniel C Ciobanu, University of Nebraska, Lincoln, NE P0371: Genome Mapping, Tagging & Characterization: Swine - Odd

Validation of Genetic Makers for Pig Resistance to PRRSV Infection P0368: Genome Mapping, Tagging & Characterization: Swine - Even Pengxia Niu1, Nadeen Shabir2, Amina Khatun2, Suna Gu3, Kwan-Suk Kim4, A Candidate Gene-Transcription Factor Network for Number of Stillborn 3 2 Piglets Sang-Myoung Lee and Won-Il Kim , (1)Chungbuk National University/Department of Animal Science, Cheongju, South Korea, Simone Guimaraes1, Lucas L Verardo2, Fabyano F Silva2, Matthew Kelly3, (2)Chonbuk National University/College of Veterinary Medicine, Jeonju, South Ole Madsen4, Marcos S Lopes4, Paulo S Lopes2 and Egbert Knol5, Korea, (3)Chonbuk National University/Division of Biotechnology, Jeonju, (1)Universidade Federal de VIçosa, Viçosa, Brazil, (2)Universidade Federal de South Korea, (4)Chungbuk National University/Department of Animal Science, Viçosa, Viçosa, Brazil, (3)Queensland Alliance for Agriculture & Food Chungcheongbuk, South Korea Innovation, St Lucia, Australia, (4)Wageningen University, Wageningen, Netherlands, (5)Topigs Norsvin, Beuningen, Netherlands P0372: Genome Mapping, Tagging & Characterization: Swine - Even

Identification of QTL Responsible for the Immune Response to Porcine Reproductive and Respiratory Syndrome (PRRS) Virus Infection Igseo Choi and Joan K Lunney, APDL, BARC, ARS, USDA, Beltsville, MD

233 P0373: Genome Mapping, Tagging & Characterization: Swine - Odd P0376: Genome Mapping, Tagging & Characterization: Swine - Even The Recent Update of the Swine Leukocyte Antigen (SLA) Nomenclature Identification of Functional Polymorphisms in the Coding Sequence of System Swine Toll-like Receptors Jun Heon Lee, Department of Animal Science and Biotechnology, College of Armand Sanchez, Center for Research in Agricultural Genomics, Universitat Agriculture and Life Sciences, Chungnam National University, Daejeon, South Autònoma de Barcelona, Bellaterra (Barcelona), Spain, Alex Clop, Centre for Korea, Sabine Hammer, Institute of Immunology, Department of Pathobiology, Research in Agricultural Genomics (CRAG), Cerdanyola del Valles, Spain, University of Veterinary Medicine Vienna, Vienna, Austria, Asako Ando, Abe Huisman, Hendrix-Genetics, Boxmeer, Netherlands and Pieter van As, Department of Molecular Life Science, Division of Basic Medical Science and Hendrix Genetics, Boxmeer, Netherlands Molecular Medicine, Tokai University School of Medicine, Isehara, Kanagawa, Japan, Claire Rogel-Gaillard, INRA, UMR1313 Animal Genetics and Integrative Biology, Jouy-en-Josas, France, Lawrence B Schook, University of P0377: Genome Mapping, Tagging & Characterization: Sheep - Odd Illinois, Urbana, IL, Douglas Smith, University of Michigan (retired), Ann Development of a SNP Parentage Assignment Panel for French Sheep Arbor, MI, Joan K Lunney, APDL, BARC, ARS, USDA, Beltsville, MD and Breeds Chak-Sum Ho, Histocompatibility Laboratory, Gift of Life Michigan, Ann Arbor, MI Flavie Tortereau, INRA, Castanet Tolosan Cedex, France, Carole R Moreno, INRA, Toulouse, France, Gwenola Tosser-Klopp, INRA, Castanet-Tolosan,

France, Laetitia Barbotte, LABOGENA-DNA, Jouy en Josas Cedex, France, P0374: Genome Mapping, Tagging & Characterization: Swine - Even Lucie Genestout, LABOGENA DNA, Jouy-en-Josas, France and Jérôme Swine Leukocyte Antigen Class-II Region Is Associated with Variation in Raoul, Institut de L'Elevage, Castanet Tolosan Cedex, France Porcine Circovirus 2b Susceptibility Emily Tosky1, Taylor Engle1, Emily Davis1, Shyamaly Premaraj1, Graham S P0378: Genome Mapping, Tagging & Characterization: Sheep - Even Plastow2, Stephen D Kachman1 and Daniel C Ciobanu1, (1)University of Rumen Microbial Populations Associated with Feed Efficiency in Lambs Nebraska, Lincoln, NE, (2)University of Alberta, Edmonton, AB, Canada Fed an Antibiotic Supplemented Forage Diet

1 1 1 Hannah C Cunningham , Lyndi E Speiser , Cara Clarkson , Melinda J P0375: Genome Mapping, Tagging & Characterization: Swine - Odd Ellison1, Kathleen J Austin1, Gavin Conant2, William R Lamberson2 and Kristi 1 The Function Analyses on pR236H and pD298N of MC4R Gene in the Pig M Cammack , (1)Department of Animal Science, University of Wyoming, Laramie, WY, (2)Division of Animal Sciences, University of Missouri, Lizhu Niu1, Xin Zhang1, Yaxiong Tao2, Xiaolei Liu1 and Bin Fan1, Columbia, MO (1)Huazhong Agricultural University, Wuhan, China, (2)Auburn University, Auburn, AL

P0379: Genome Mapping, Tagging & Characterization: Sheep - Odd P0382: Genome Mapping, Tagging & Characterization: Sheep - Even Detection of Lethal Mutations in Sheep: Research for Homozygous The Polycerate Trait in Jacob and Navajo-Churro Sheep may be Located Chromosome Segments with High Density Molecular Information (54 000 on Ovine Chromosome 2 SNPs) Tracy Hadfield1, Noelle Cockett1 and James Kijas2, (1)Utah State University, Morgane L Petit1, Sébastien Fritz2, Jean-Michel Astruc3, Rachel Rupp4, Logan, UT, (2)CSIRO Agriculture Flagship, St Lucia, Australia 5 4 Romain Saintilan and Carole R Moreno , (1)INRA Toulouse, Toulouse, France, (2)UNCEIA Genetics Team, Paris, France, (3)Idele Toulouse, Toulouse, France, (4)INRA, Toulouse, France, (5)UNCEIA, Jouy-en-Josas, P0383: Genome Mapping, Tagging & Characterization: Sheep - Odd France Comparison of Multi-Breed and Within-Breed Genomic Evaluation in French Dairy Goat P0380: Genome Mapping, Tagging & Characterization: Sheep - Even Céline Carillier1, Hélène Larroque2 and Christèle Robert-Granié2, (1)INRA Rumen Microbiota Differences Associated with Diet and Feed Efficiency UMR 1388 GenPhySE Toulouse, Castanet Tolosan, France, (2)INRA UM Status in Sheep 1388, Castanet Tolosan cedex, France

Melinda J Ellison1, Gavin Conant2, William R Lamberson2, Rebecca R Cockrum3, Kathleen J Austin1 and Kristi M Cammack1, (1)Department of P0384: Genome Mapping, Tagging & Characterization: Sheep - Even Animal Science, University of Wyoming, Laramie, WY, (2)Division of Animal Population Structure and Breed Relations of South African Indigenous Sciences, University of Missouri, Columbia, MO, (3)Virginia Polytechnic Goat Ecotypes Using Genome-Wide SNP Data Institute and State University, Blacksburg, VA Khanyisile Mdladla1, Edgar F Dzomba1, Heather J Huson2 and Farai C 3 Muchadeyi , (1)University of KwaZulu-Natal, Pietermartzburg, South Africa, P0381: Genome Mapping, Tagging & Characterization: Sheep - Odd (2)Cornell University, Ithaca, NY, (3)Agricultural Research Council, Pretoria, Artiodactyl MYADM-like Repeat Region: BAC Sequence Identifies 7 Open South Africa Reading Frames with Differing Lengths Between Reference Genome and Alternate Allele Michael V Gonzalez1, Michelle Mousel2, David R Herndon2, Brian Dalrymple3, James O Reynolds2, Christopher M Seabury4 and Stephen N White2, (1)Washington State University, Pullman, WA, (2)USDA ARS Animal Disease Research, Pullman, WA, (3)CSIRO Agriculture Flagship, St Lucia, Australia, (4)Texas A&M University, College Station, TX

234 P0385: Genome Mapping, Tagging & Characterization: Sheep - Odd P0388: Genome Mapping, Tagging & Characterization: Canine and Feline - Development and Implementation of a Simple KASP Genotyping Test for Even Identifying Tay-Sachs Disease Carriers in Jacobs Sheep Using a Read-Based Approach to Estimate the Accumulation of Deleterious Variation in Domestic and Wild Canids from Low-Coverage Christopher Lewis, Jacobs Sheep Society, Exeter, United Kingdom, J D Sequencing Data Curry, LGC Ltd, Hoddesdon, United Kingdom, Timothy Cox, University of Cambridge, Department of Medicine, Cambridge, United Kingdom, Mark Clare D Marsden1, Robert D Schnabel2, Gary S Johnson3, Robert K Wayne1 Wessels, Finn Pathologists, Norfolk, United Kingdom and Helen Carty, Ayr and Kirk E Lohmueller1, (1)University of California Los Angeles, Los Angeles, Disease Surveillance Centre, Ayr, United Kingdom CA, (2)Division of Animal Sciences, University of Missouri, Columbia, MO, (3)Department of Vet Pathobiology, University of Missouri, Columbia, MO P0386: Genome Mapping, Tagging & Characterization: Sheep - Even Deletion of the Entire CSN1S1 Gene Is Responsible for the Lack of Alpha P0389: Genome Mapping, Tagging & Characterization: Canine and Feline - S1-Casein in Goat (Capra hircus) Milk Odd 99 Lives Cat Whole Genome Sequencing Initiative Update Valentin Adrian Balteanu1, Alexandra Silvia Costin1 and Marcel Amills2, (1)University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca, Leslie A Lyons, University of Missouri-Columbia, Columbia, MO Romania, Cluj-Napoca, Romania, (2)Center for Research in Agricultural Genomics - University Autonomus of Barcelona, Bellaterra, Spain P0390: Genome Mapping, Tagging & Characterization: Canine and Feline - Even P0387: Genome Mapping, Tagging & Characterization: Canine and Feline - The Genome of the Iberian Lynx Odd Tyler Alioto1, André Corvelo1, Fernando Cruz1, Leonor Frias1, Paolo Ribeca1, Genetic Factors Associated with Lumbosacral Stenosis in Labrador 2 1 1 Retrievers José Godoy , Marta Gut and Ivo Gut , (1)Centro Nacional de Análisis Genómico, Barcelona, Spain, (2)Estación Biológica de Doñana, CSIC, Sevilla, Meenakshi Mukherjee, Jianbo Yao, Amy Welsh and Jeryl Jones, West Spain Virginia University, Morgantown, WV

P0391: Genome Mapping, Tagging & Characterization: Canine and Feline - P0394: Genome Mapping, Tagging & Characterization: Poultry - Even Odd Characterization of Transcriptome-associated SNPs in the Chicken

Industrial-Scale Variant Analysis Enabling the 99 Lives Cat Genome 1 2 3 2 Project Modupeore Adetunji , Susan J Lamont , Chris Ashwell , Max F Rothschild , Michael Persia4 and Carl J Schmidt1, (1)University of Delaware, Newark, DE, Holly C Beale, Dan Kearns, Todd M Lowe and Patricia P Chan, Maverix (2)Iowa State University, Ames, IA, (3)North Carolina State University, Biomics, San Mateo, CA Raleigh, NC, (4)Virginia Polytechnic and State University, Blacksburg, VA

P0392: Genome Mapping, Tagging & Characterization: Poultry - Even P0395: Genome Mapping, Tagging & Characterization: Poultry - Odd de novo Assembly of the Chinese Bamboo-Partridge Genome and Whole Genome Shotgun Sequencing Metagenomics Analysis for the Comparison with Chicken "Common" Scientist

Gabriel Rognon1, Diane Esquerré2, Sylvain Foissac1, Alain Vignal3, Jean Luc John CF Hsieh, Muhammed Walugembe, Nick J Koszewski, Susan J Lamont, Coville4, Bertrand Bed'hom5, Michèle Tixier-Boichard6 and Thomas Faraut7, Michael E Persia and Max F Rothschild, Iowa State University, Ames, IA (1)INRA - GenPhySE, Castanet Tolosan, France, (2)INRA GeT-PlaGe Genomics Facility - GenPhySe, Castanet Tolosan cedex, France, (3)INRA Toulouse, Laboratoire de Génétique Cellulaire, Toulouse, France, (4)INRA, P0396: Genome Mapping, Tagging & Characterization: Poultry - Even UMR de Génétique Animale et Biologie Intégrative, Jouy-en-Josas, France, A New Look at the LTR Retrotransposon Content of the Chicken Genome (5)INRA, UMR GABI, Jouy-en-Josas CEDEX, France, (6)INRA, UMR GABI, Jouy-en-Josas, France, (7)INRA - GenPhySE, Castanet-Tolosan, France Andrew S Mason, The Roslin Institute, Easter Bush, United Kingdom, Paul M Hocking, The Roslin Institute, The University of Edinburgh, Midlothian,

United Kingdom and David W Burt, Roslin Institute Univ of Edinburgh, P0393: Genome Mapping, Tagging & Characterization: Poultry - Odd Edinburgh, United Kingdom Building a de novo Chicken Genome Annotation with PacBio Transcriptome Sequencing P0397: Genome Mapping, Tagging & Characterization: Poultry - Odd Richard Kuo, Roslin Institute, University of Edinburgh, Edinburgh, United Tissue-Specific Transcriptome Regulation through Histone Modifications Kingdom, Elizabeth Tseng, Pacific Biosciences, Menlo Park, CA, Alan L in Chickens Archibald, The Roslin Institute and R(D)SVS, University of Edinburgh, Midlothian, United Kingdom and David W Burt, Roslin Institute Univ of Perot Saelao, UC Davis, DAVIS, CA and Huaijun Zhou, University of Edinburgh, Edinburgh, United Kingdom California, Davis, CA

235 P0398: Genome Mapping, Tagging & Characterization: Poultry - Even P0401: Genome Mapping, Tagging & Characterization: Poultry - Odd Genome Wide Genetic Variation Analysis of a Brown Leghorn Layer Transcriptomic Analysis of Hypothalamic Responses in Modern and Chicken Line Legacy Chicken Lines Choon Kiat Khoo, The Roslin Institute & R(D)SVS, University of Edinburgh, Lakshmi Praveena Kamineni1, Liang Sun1, Allen Hubbard1, Janet deMena1, Easter Bush, United Kingdom, Almas Gheyas, The Roslin Institute & Carl J Schmidt1, Susan J Lamont2, Max F Rothschild2, Michael E Persia3 and R(D)SVS, University of Edinburgh, Edinburgh, United Kingdom, Richard Chris Ashwell4, (1)University of Delaware, Newark, DE, (2)Iowa State Kuo, Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom, University, Ames, IA, (3)Virginia Tech, Blacksburg, VA, (4)North Carolina Paul M Hocking, The Roslin Institute, The University of Edinburgh, State University, Raleigh, NC Midlothian, United Kingdom and David W Burt, Roslin Institute Univ of Edinburgh, Edinburgh, United Kingdom P0402: Genome Mapping, Tagging & Characterization: Poultry - Even

Avian Dopamine Receptors DRD1a and DRD1b Arise from an Ancient P0399: Genome Mapping, Tagging & Characterization: Poultry - Odd Vertebrate Whole Genome Duplication

Metagenomics Analysis of Broiler and Layer Chicks Cecal Content from 1 2 1 3 High Fiber Diets Asher K Haug-Baltzell , Eric Lyons , Fiona McCarthy and Erich Jarvis , (1)University of Arizona, Tucson, AZ, (2)University of Arizona | iPlant Muhammed Walugembe1, John CF Hsieh1, Nick J Koszewski1, Susan J Collaborative, Tuscon, AZ, (3)Duke University Medical Center, Durham, NC 1 2 1 Lamont , Michael E Persia and Max F Rothschild , (1)Iowa State University, Ames, IA, (2)Virginia Tech, Blacksburg, VA P0403: Genome Mapping, Tagging & Characterization: Poultry - Odd

Novel SNPs in the OCX-32 Gene and Their Associations with Egg P0400: Genome Mapping, Tagging & Characterization: Poultry - Even Production Traits in Korean Native Chickens Comparing the Liver from Modern Broilers and Ugandan Chicken Sung-Jin Lee, Kangwon National University, Chuncheon, South Korea, So- Sara F Jastrebski1, Carl J Schmidt1, Michael Persia2, Chris Ashwell3, Max F Young Choi, Kangwon National Uinv Korea, Chuncheon, South Korea and Ji Rothschild4 and Susan J Lamont4, (1)University of Delaware, Newark, DE, Yeon Lee, Kangwon National Uinv, Korea, Chuncheon, South Korea (2)Virginia Polytechnic and State University, Blacksburg, VA, (3)North Carolina State University, Raleigh, NC, (4)Iowa State University, Ames, IA P0404: Genome Mapping, Tagging & Characterization: Poultry - Even

Genome Wide Association Study for Sperm Mobility Phrnotype in Broiler Chickens Sohita Ojha1, Douglas D Rhoads1 and David P Froman2, (1)University of Arkansas, Fayetteville, AR, (2)Oregon State University, Corvallis, OR

P0405: Genome Mapping, Tagging & Characterization: Poultry - Odd P0409: Genome Mapping, Tagging & Characterization: Poultry - Odd Sex-Specific Differential Gene Expression during Muscle Development in Differential Gene Expression in the Hen Liver in Response to Different the Turkey Feeding Conditions Helen A Sobczynski1, Kristelle M Mendoza1, Melissa S Monson1, Sungwon Claire S Stephens and Patricia A Johnson, Cornell University, Ithaca, NY 2 2 1 Kim , Rami A Dalloul and Kent M Reed , (1)University of Minnesota, St Paul, MN, (2)Virginia Tech University, Blacksburg, VA P0410: Genome Mapping, Tagging & Characterization: Poultry - Even

Interrogation of Differentially Expressed Genes Governing Residual Feed P0406: Genome Mapping, Tagging & Characterization: Poultry - Even Intake in Chickens Using RNA-Seq A Complex Genomic Structural Variation on Gallus gallus Chromosome 27 Lead to Ectopic Gene Expression Which Caused Beard in Chicken Guoqiang Yi, Jingwei Yuan, Wei Yan and Ning Yang, China Agricultural University, Beijing, China 1 1 1 1 2 Xiaorong Gu , Ying Guo , Zheya Sheng , Yanqiang Wang , Chenglong Luo , Hao Qu2, Dingming Shu2, Yiqiang Zhao1, Li Ning1 and Xiaoxiang Hu1, (1)China Agricultural University, Beijing, China, (2)Institute of Animal P0411: Genome Mapping, Tagging & Characterization: Poultry - Odd Science, Guangdong Academy of Agricultural Sciences, Guangzhou, China RNA-Seq Based Genome-Wide Analysis of Genomic Imprinting in Chicken Lungs P0407: Genome Mapping, Tagging & Characterization: Poultry - Odd Tae Hyun Kim1, Ying Wang1, Zhenhua Zhao1, Susan J Lamont2 and Huaijun 1 Expression Analysis of Chicken Pimordial Germ Cell Specific Genes in Zhou , (1)University of California, Davis, CA, (2)Iowa State University, Ames, Male and Female Cultures IA

Nhung T Nguyen and Douglas D Rhoads, University of Arkansas, Fayetteville, AR P0412: Genome Mapping, Tagging & Characterization: Poultry - Even Promoter SNPs in the Serotonin Receptor Gene 5HT2B and Their Association with Ascites in Chicken P0408: Genome Mapping, Tagging & Characterization: Poultry - Even Comparison of Broiler Chicken Retina and Pineal Gland Transcriptome Khaloud Alzahrani, Douglas D Rhoads, Robert F Wideman and Nicholas B Anthony, University of Arkansas, Fayetteville, AR Allison Rogers, Allen Hubbard, Liang Sun and Carl J Schmidt, University of Delaware, Newark, DE

236 P0413: Genome Mapping, Tagging & Characterization: Poultry - Odd P0417: Genome Mapping, Tagging & Characterization: Poultry - Odd Specialized Antigen Presentation by YF MHC Class I-Like Molecules in Genome-Wide Assessment of Copy Number Variation in Two Chicken Poultry Health Lines with Different Susceptibility to Marek's Disease Using Next Generation Sequencing Marcia M Miller, Ronald M Goto, Melissa Kaye Delgado and Michael Soekamto, Beckman Research Institute, City of Hope, Duarte, CA Yiyuan Yan1, Ning Yang1, Hans Cheng2, Jiuzhou Song3 and Lujiang Qu1, (1)China Agricultural University, Beijing, China, (2)USDA, ARS, ADOL, East Lansing, MI, (3)University of Maryland, College Park, MD P0414: Genome Mapping, Tagging & Characterization: Poultry - Even

Investigation of Single Nucleotide Polymorphisms for UTS2D and AGTR1 for Their Association with Ascites in Chickens P0418: Genome Mapping, Tagging & Characterization: Poultry - Even RNA-Seq to Identify Genes Involved with Femoral Head Necrosis in Shatovisha Dey, Robert F Wideman, Nicholas B Anthony and Douglas D Broilers Rhoads, University of Arkansas, Fayetteville, AR 1 2 2 Ricardo Zanella , Jane de Oliveira Peixoto , Adriana Mércia Guaratini Ibelli , Mauricio Cantao3, Matthew Settles4, Luiz Lehmann Coutinho5 and Monica P0415: Genome Mapping, Tagging & Characterization: Poultry - Odd Correa Ledur2, (1)CNPq/BJT at Embrapa Swine and Poultry, Concórdia, Marker Assisted Selection for Ascites Resistance in Broilers Using a Brazil, (2)Embrapa Swine and Poultry, Concórdia, Santa Catarina, Brazil, Chromosome Z Locus (3)Embrapa Swine and Poultry, Concordia, Brazil, (4)University of Idaho, Moscow, ID, (5)ESALQ - USP, Piracicaba, SP, Brazil Katy Estill, Sriram Krishnamoorthy, Nicholas B Anthony and Douglas D

Rhoads, University of Arkansas, Fayetteville, AR P0419: Genome Mapping, Tagging & Characterization: Poultry - Odd

Viral/Host Gene Expression Profiles in Lymphoid and Feather Follicle P0416: Genome Mapping, Tagging & Characterization: Poultry - Even Epithelial (FFE) Cells Infected with Marek’s Disease Virus (MDV) in Differential Transcriptome Analysis of CD4+ T Cells of Chickens Induced Chicken By Marek's Disease Virus Challenge Deepali Vasoya, Roslin Institute, University of Edinburgh, Edinburgh, United 1 2 1 Yanghua He , Huanmin Zhang and Jiuzhou Song , (1)University of Kingdom Maryland, College Park, MD, (2)USDA ARS Avian Disease & Oncology

Laboratory, East Lansing, MI

P0420: Genome Mapping, Tagging & Characterization: Poultry - Even P0424: Genome Mapping, Tagging & Characterization: Poultry - Even Chicken Nano-Defensin-9 Displays Potent Antimicrobial Activities Against RNA-Seq Analysis of Wooden Breast Disease: Characterizing a Novel Multidrug Resistant Bacteria and Fungi Myopathy in Commercial Chickens through Differential Gene Expression Haitham Yacoub, King Abdulaziz University, jeddah, Saudi Arabia Marie Mutryn1, Erin Brannick1, Weixuan Fu1, William Lee2 and Behnam 1 Abasht , (1)Department of Animal Science, University of Delaware, Newark, DE, (2)Maple Leaf Farms, Leesburg, IN P0421: Genome Mapping, Tagging & Characterization: Poultry - Odd

Genome-Wide Scan of Resistance to Necrotic Enteritis in Chickens P0425: Genome Mapping, Tagging & Characterization: Poultry - Odd Yeong Ho Hong1, Eui-Soo Kim2, Boyeong Park1, Jihye Ban1 and Hyun S 3 Transcriptional Analysis of Resistance to Newcastle Disease Virus Lillehoj , (1)Chung-Ang University, Anseong, South Korea, (2)Iowa State Infection in Two Genetically Distinct Inbred Chicken Line University, Ames, IA, (3)USDA-ARS, Beltsville, MD Perot Saelao, UC Davis, DAVIS, CA, Ying Wang, University of California Davis, Davis, CA and Huaijun Zhou, University of California, Davis, CA P0422: Genome Mapping, Tagging & Characterization: Poultry - Even

Genetic and Genome Analyses of Bacteria Cultured from Lame Broilers with Osteomyelitis P0426: Genome Mapping, Tagging & Characterization: Poultry - Even Morphometric and Transcriptome Analysis of Probiotic Treated Heat Adnan Al-Rubaye, University of Arkansas, Fayetteville, AR Stress Birds

Blair Kathleen Schneider1, Matheus Reis1, AP Garcia1, Chris Ashwell2, P0423: Genome Mapping, Tagging & Characterization: Poultry - Odd Michael Persia3, Max F Rothschild4, Susan J Lamont4 and Carl J Schmidt1, Genome-Wide Association Study for Response to Eimeria maxima (1)University of Delaware, Newark, DE, (2)North Carolina State University, Challenge in Broilers Raleigh, NC, (3)Virginia Polytechnic and State University, Blacksburg, VA, (4)Iowa State University, Ames, IA Edin Hamzic1, Bertrand Bed'hom2, Frédéric Hérault3, Hervé Juin4, Rachel J 5 5 6 7 Hawken , Mitchell S Abrahamsen , Jean-Michel Elsen , Bertrand Servin and Marie-Hélène Pinard-van der Laan8, (1)AgroParisTech / INRA, UMR1313 P0427: Genome Mapping, Tagging & Characterization: Poultry - Odd GABI, Jouy-en-Josas CEDEX, France, (2)INRA, UMR GABI, Jouy-en-Josas Transcriptome Analysis of Genetic Resistance to Heat Stress in Two CEDEX, France, (3)INRA, UMR1348 PEGASE, Saint-Gilles, France, Genetically Distinct Chicken Inbred Lines (4)INRA, UE1206 EASM, Surgères, France, (5)Cobb-Vantress, Siloam Springs, AR, (6)UMR 1388 GenPhySE, Castanet-Tolosan, France, (7)INRA, Ying Wang, University of California Davis, Davis, CA UMR1388 GenPhySe, Castanet-Tolosan, France, (8)INRA, UMR1313 GABI, Jouy-en-Josas CEDEX, France

237 P0428: Genome Mapping, Tagging & Characterization: Poultry - Even P0431: Genome Mapping, Tagging & Characterization: Insects - Odd Synbiotics-Regulated Gene Expression Signatures Determined in Vitro de novo Transcriptome Assembly of the Parasitoid Wasp Fopius arisanus reflect the Molecular Background of the Treated Host Animal Using RNA-Seq Anna Slawinska1, Maria Siwek1, Arkadiusz Plowiec1, Aleksandra Bernarda Calla, ARS-USDA, Hilo, HI, Brian Hall, University of Hawaii - Dunislawska1, Marek Bednarczyk1 and Hans Bluyssen2, (1)University of Manoa, Honolulu, HI, Sheina Sim, University of Hawaii-Manoa, Honolulu, HI, Technology and Life Sciences, Bydgoszcz, Poland, (2)Adam Mickiewicz Eva Brill, University of Hawaii, Hilo, HI and Scott Geib, USDA-ARS, Hilo, HI University, Poznan, Poland P0432: Genome Mapping, Tagging & Characterization: Insects - Even P0429: Genome Mapping, Tagging & Characterization: Poultry - Odd Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes

Text-Mining and Visualization Approach Help Interpret Experimental 1 1 2 3 Data and Make Hypothesis Monica C Munoz-Torres , Nathan A Dunn , Monica Poelchau , Colin Diesh , Deepak Unni3, Ian Holmes4, Christine G Elsik5 and Suzanna Lewis1, Pan Teng1, Liang Sun1, Allison Rogers1, Catalina Oana Tudor Tudor2, Cecilia (1)Lawrence Berkeley National Laboratory, Walnut Creek, CA, Arighi3, Vijay Shanker1 and Carl J Schmidt1, (1)University of Delaware, (2)USDA/Agricultural Resarch Service/National Agricultural Library, Newark, DE, (2)Center Bioinformatics & Comp Bio – University of Delaware, Beltsville, MD, (3)Division of Animal Sciences, University of Missouri, Newark, DE, (3)CBCB – University of Delaware, Newark, DE Columbia, MO, (4)Department of Bioengineering, Berkeley, CA, (5)University of Missouri, Columbia, MO P0430: Genome Mapping, Tagging & Characterization: Poultry - Even Using Random Forests to Identify Candidate Genes for Binary Trait in P0433: Genome Mapping, Tagging & Characterization: Insects - Odd Poultry GWAS Datasets: The IMPACT of Correcting for Family The Genome of Plutella xylostella (Diamondback Moth) Three Ways Structures Alistair C Darby1, Neil Hall1, Christiane Hertz-Fowler2, Rachel Brenchley1, Yutao Li1, Sigrid A Lehnert1, Andrew George2, Rachel J Hawken3 and Arjen Van 't Hof3, Thea Marubbi4, Luke Alphey4 and Neil Morrison4, Antonio Reverter1, (1)CSIRO Agriculture Flagship, Brisbane, Australia, (1)University of Liverpool, Liverpool, United Kingdom, (2)University of (2)CSIRO Digital Productivity and Services Flagship, Brisbane, Australia, Liverpool, Liverpool, AB, United Kingdom, (3)Institute of Integrative Biology, (3)Cobb-Vantress, Siloam Springs, AR Liverpool, United Kingdom, (4)Oxitec Ltd, United Kingdom

P0434: Genome Mapping, Tagging & Characterization: Insects - Even P0438: Genome Mapping, Tagging & Characterization: Insects - Even Use of Crowdsourcing Challenge to Develop RNAi Based Biological Pattern of Sex Chromosome Dosage Compensation in Lepidoptera: Control of the Citrus Greening Vector, Diaphornia citri Insights from a Fused Moth Z Chromosome John Ramos1, Robert G Shatters Jr2, Charles A Powell3, Dov Borovsky2, Liuqi Gu, Cornell University, GENEVA, NY 4 4 3 Siddarame T Gowda , William Dawson and Ritesh Jain , (1)USDA/ARS, Fort Pierce, FL, (2)US Department of Agriculture, Fort Pierce, FL, (3)University of Florida, IFAS, Fort Pierce, FL, (4)University of Florida, CREC, Lake Alfred, P0439: Genome Mapping, Tagging & Characterization: Insects - Odd FL Double Digested RAD Sequencing Technique for SNP Identification on Africanized Apis mellifera Honeybee Populations P0435: Genome Mapping, Tagging & Characterization: Insects - Odd Samir M Kadri1, Diego P Alonso2, Paulo E Martins Ribolla3, Rodrigo 4 5 1 Gene Expression Changes in Response to Aging Compared to Stress Zaluski , Amro Zayed and Ricardo O Orsi , (1)University of Veterinary Conditions in Drosophila melanogaster Medicine and Animal Sciences - UNESP, Botucatu, Brazil, (2)Department of Parasitology - IBB/UNESP, Botucatu, Brazil, (3)IBB - UNESP - Department of Jie Shen, Hangzhou Dianzi University, Hangzhou City, China Parasitology, Botucatu, Brazil, (4)FMVZ-UNESP-Botucatu, Botucatu, Brazil, (5)York University, Toronto, ON, Canada P0436: Genome Mapping, Tagging & Characterization: Insects - Even Reducing Biases in Small RNA-Sequencing P0440: Genome Mapping, Tagging & Characterization: Insects - Even Draft Genome of the Globally Widespread Whitefly Bemisia tabaci Dawn Obermoeller, Masoud Toloue and Adam Morris, Bioo Scientific, Austin, TX Wenbo Chen, Boyce thompson institute for plant research, Ithaca, NY, Daniel K Hasegawa, Cornell University, Charleston, SC, Alvin M Simmons, USDA- ARS, Charleston, SC, Kathiravetpilla Arumuganathan, Benaroya Research P0437: Genome Mapping, Tagging & Characterization: Insects - Odd Institute at Virginia Mason, Seattle, WA, William M Wintermantel, USDA- Genome-Wide Long Intergenic Noncoding RNAs (lincRNAs) Profiling ARS, Salinas, CA, Kai-Shu Ling, USDA-ARS, Charleston,, SC and Zhangjun Reveals a Sub Set of lincRNAs Exhibiting Similar Response to Diverse Fei, Cornell University, Ithaca, NY Viral Diseases in Honey Bees Murukarthick Jayakodi, Je Won Jung, Tae-Jin Yang and Hyung Wook Kwon, Seoul National University, Seoul, South Korea

238 P0441: Genome Mapping, Tagging & Characterization: Insects - Odd P0444: Genome Mapping, Tagging & Characterization: Other Animal Species - Genomic Insights on the Recent Evolution of Novel Host Use in the Melissa Even Blue Butterfly (Lycaeides melissa) Determining cDNA Sequences for Targeted Axolotl Salamander Genes Using Assembled RNA-Seq Reads Samridhi Chaturvedi, Department of Biology, Utah State University, Logan, UT Parvathy Thampi1, Jinpeng Liu2, Zheng Zeng3 and James N MacLeod1, (1)Department of Veterinary Science, University of Kentucky, Lexington, KY, (2)Markey Cancer Center, University of Kentucky, Lexington, KY, P0442: Genome Mapping, Tagging & Characterization: Other Animal Species - (3)Memorial Sloan Kettering Cancer Center, New York, NY Even

Comparative Study Between Three Egyptian and Two Spanish Local Rabbit Breeds By Using Mitochondrial DNA P0445: Genome Mapping, Tagging & Characterization: Other Animal Species - Odd Ahmed Mostafa Emam, Animal Production Research Institute, Dokkii, Egypt Diversity and Evolution of Transposable Elements Across Four Anolis Lizard Genomes P0443: Genome Mapping, Tagging & Characterization: Other Animal Species - Marc Tollis1, Catherine May1, Elizabeth D Hutchins1, Walter L Eckalbar2 and Odd Kenro Kusumi1, (1)Arizona State University, Tempe, AZ, (2)University of RGB-Net, a Collaborative European Network on Rabbit Genome Biology: California San Fransisco, San Fransisco, CA Taking out the Rabbit from a Dark Burrow Luca Fontanesi, Department of Agricultural and Food Sciences, University of P0446: Genome Mapping, Tagging & Characterization: Other Animal Species - Bologna, Bologna, Italy, Hervé Garreau, INRA, Castanet Tolosan Cedex, Even France, Zsuzsanna Bosze, Agricultural Biotechnology Institute, Gödöllõ, Characterization of a Large Vertebrate Genome Using Shotgun and Laser Hungary, Ino Curik, Department of Animal Science, University of Zagreb, Capture Chromosome Sequencing - Salamander Zagreb, Croatia, Miriam Piles, IRTA, Caldes de Montbuí, Spain, Claire Rogel- Gaillard, INRA - UMR1313, Jouy en Josas, France and Carl-Gustaf Thulin, Melissa Keinath1, Panagiotis A Tsonis2, Vladimir Timoshevskiy1, S Randal Department of Wildlife, Fish, and Environmental Studies, Swedish University Voss1 and Jeramiah J Smith1, (1)University of Kentucky, Lexington, KY, of Agricultural Scienses, Umeå, Sweden (2)University of Dayton, Dayton, OH

P0447: Genome Mapping, Tagging & Characterization: Other Animal Species - P0450: Genome Mapping, Tagging & Characterization: Microbes and Odd Pathogens - Even Ecological Transcriptomics in Salamandra salamandra and S Complete Genome Sequence and Comparative Genomic Analyses infraimmaculata, a Test Case for Applying Non-Lethal Sampling of Staphylococcus aureus FORC_001, a Food-Borne Pathogens Techniques Sooyeon Lim1, Heebal Kim1, Sang-Ho Choi2, Sangryeol Ryu1 and Ju-Hoon Till Czypionka1, Antonina Polevikov2, Janine Altmueller3, Ori Segev2, Lee3, (1)Seoul National University, Seoul, South Korea, (2)Seoul National Sebastian Steinfartz4, Alan Tempelton2, Leon Blaustein2, Tamar Krugman2 University, seoul, South Korea, (3)Kyung Hee University, Yongin, South and Arne Nolte1, (1)Department of Evolutionary Genetics, Plön, Germany, Korea (2)Institute of Evolution and Department of Evolutionary and Environmental Biology, Haifa, Israel, (3)Cologne Centre for Genomics, Köln, Germany, (4)Department of Evolutionary Biology, Unit Molecular Ecology, P0451: Genome Mapping, Tagging & Characterization: Microbes and Braunschweig, Germany Pathogens - Odd Molecular Identification of Virulence Markers of E coli P0448: Genome Mapping, Tagging & Characterization: Other Animal Species - Onizan Godian Zogibi, King Abdulaziz University, Jeddah, Saudi Arabia Even

Genome Annotation of the Genetic Model, Xenopus laevis, Enriched for P0452: Genome Mapping, Tagging & Characterization: Microbes and the Developing Central Nervous System Pathogens - Even John A Cornelius1, Kendall Van Keuren-Jensen2, Lin-Chien Huang3, Amanda Molecular Characterization of Salmonella Enterica Recovered from Major Courtright2, Ivana Malenica2, Hollis Cline3 and Kenro Kusumi1, (1)Arizona Food of Animal Origin Collected from Saudi Arabia State University, Tempe, AZ, (2)Translational Genomics Research Institiute, Phoenix, AZ, (3)The Scripps Research Institute, La Jolla, CA Abdullah Abdelaziz Alarfaj, King Saud University, College of Science, Riyadh, Saudi Arabia

P0449: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd P0453: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Comparative Genome Analysis of Clavibacter michiganensis Subsp michiganensis strains Provides Insights into Genetic Diversity and Molecular and Serotyping Characterization of Shiga Toxogenic Virulence Escherichia coli Associated with Food Collected from Saudi Arabia Shree P Thapa, UC Davis, Davis, CA Ihab Mohamed Moussa, King Saud University, Riyadh, Saudi Arabia

239 P0454: Genome Mapping, Tagging & Characterization: Microbes and P0457: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Pathogens - Odd The Genome and Transcriptome of the Zoonotic Hookworm Ancylostoma Fungal Phytotoxins and Ascochyta Blights of Cool Season Legumes ceylanicum Reveal Infection-Specific Gene Families Wonyong Kim1, Tobin Peever1, George J Vandemark2 and Weidong Chen2, Erich M Schwarz1, Yan Hu2, Igor Antoshechkin3, Melanie M Miller4, Paul W (1)Washington State University, Pullman, WA, (2)USDA-ARS Washington Sternberg3 and Raffi V Aroian2, (1)Cornell University, Ithaca, NY, State University, Pullman, WA (2)University of Massachusetts Medical School, Worcester, MA, (3)California Institute of Technology, Pasadena, CA, (4)University of California San Diego, La Jolla, CA P0458: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even

Population Characterization of Brazilian Isolates of Ceratocystis spp Using P0455: Genome Mapping, Tagging & Characterization: Microbes and Microsatellites Pathogens - Odd Edson Furtado1, Ana Firmino1, Michael Mbenoun2, Denise Nosaki1, Ariska Genetic Diversity and Mating-Type Locus Characterization 3 3 3 3 in Pyrenophora semeniperda Van der Nest , Jolanda Roux , Irene Bernes and Mike Wingfield , (1)University of São Paulo State, Botucatu, Brazil, (2)uuniversity of Pretoria, Julie L Henry1, Craig E Coleman1 and Susan E Meyer2, (1)Brigham Young Pretoria, South Africa, (3)university of Pretoria, Pretoria, South Africa University, Provo, UT, (2)USDA Shrub Sciences Laboratory, Provo, UT P0459: Genome Mapping, Tagging & Characterization: Microbes and P0456: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Pathogens - Even Influence of Different Next-Generation Plataforms on GC-Bias - Molecular Mechanisms of Cercospora Pathogenicity Revealed through Corynebacterium pseudotuberculosis Comparative Genomics Kenny C Pinheiro1, Adonney A Oliveira Veras1, Pablo H C Gomes de Sá1, Alex Z Zaccaron1, John B Ridenour1, Jonathon E Smith1, Nicholas L Lawson1, Maria P C Schneider1, Vasco Azevedo2, Artur Luiz Costa Silva1 and Rommel Sandeep Sharma Khatiwada1, Marcio L Zaccaron1, Ahmad M Fakhoury2 and T J Ramos1, (1)Universidade Federal do Pará, Belém, Brazil, (2)Universidade Burt H Bluhm1, (1)University of Arkansas, Fayetteville, AR, (2)Southern Federal de Minas Gerais, Belo Horizonte, Brazil Illinois University, Carbondale, IL

P0460: Genome Mapping, Tagging & Characterization: Microbes and P0463: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Pathogens - Odd Genome Sequence and Architecture of the Tobacco Downy Mildew Identification and Diferentiation of Verticillium Species with PCR Markers Pathogen, Peronospora tabacina and Sequencing of ITS Region

Lida Derevnina1, Sebastian Reyes Chin-Wo2, Frank Martin3, Kelsey Wood2, Taja Jesenicnik1, Natasa Stajner1, Jernej Jakse1, Sebastjan Radisek2 and Lutz Froenicke2, Otmar Spring4 and Richard Michelmore2, (1)UC Davis Branka Javornik1, (1)University of Ljubljana, Biotechnical Faculty, Agronomy Genome Center, Davis, CA, (2)Genome Center, University of California, Department, Ljubljana, Slovenia, (2)Slovenian Institute for Hop Research and Davis, CA, (3)USDA ARS, Salinas, CA, (4)University of Hohenheim, Brewing, Plant Protection Department, %alec, Slovenia Stuttgart, Germany P0464: Genome Mapping, Tagging & Characterization: Microbes and P0461: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Pathogens - Odd Putative Genes Identified on Two Growth Conditions of Ganoderma Bacterial Community Profiling in Rhizoctonia Soils boninense Patricia Okubara1, Timothy Paulitz2, Chuntao Yin3, Aaron Mahoney3, Jayanthi Nagappan, Malaysian Palm Oil Board, Kajang, Selangor, Malaysia 3 3 Nicholas Arthur Mueth and Scot Hulbert , (1)USDA ARS, Pullman, WA, (2)USDA ARS, Pullan, WA, (3)Washington State University, Pullman, WA P0465: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd P0462: Genome Mapping, Tagging & Characterization: Microbes and Draft Genome Assembly and Comparative Genomic Analysis of the Plant- Pathogens - Even Parasitic Nematode Rotylenchulus reniformis Molecular Insights into the Rotylenchulus reniformis Transcriptome William S Sanders1, Kurt Showmaker1, Satish Ganji1, Mark A Arick II2, Kurt Showmaker1, William S Sanders1, Mark A Arick II2, Zenaida V Zenaida Magbanua3, Martin Wubben4, Daniel G Peterson5 and Jennifer P Magbanua2, Daniel G Peterson2 and Martin Wubben3, (1)Mississippi State Arnold2, (1)Mississippi State University, MS State, MS, (2)Institute for University, MS State, MS, (2)Mississippi State University, Mississippi State, Genomics, Biocomputing, and Biotechnology - Mississippi State University, MS, (3)USDA, ARS, Mississippi State, MS MS State, MS, (3)Department of Plant and Soil Sciences - Mississippi State University, MS State, MS, (4)USDA, ARS, Mississippi State, MS, (5)Mississippi State University, Mississippi State, MS

240 P0466: Genome Mapping, Tagging & Characterization: Microbes and P0469: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Pathogens - Odd PacBio Sequencing and Genome Annotation of Sporisorium scitamineum Using Bioinformatics Tools to Study the Genomic Diversity of the Plant Pathogen Leptosphaeria maculans in Australia Lucas M Taniguti1, Patricia DC Shaker1, Juliana Benevenuto1, Leila P Peters1, Giselle de Carvalho1, Alessandra Palhares1, João Paulo Kitajima2 and Claudia Dhwani Apurva Patel1, Manuel Matias Zander1, Agnieszka Golicz2, Paula B Monteiro-Vitorello1, (1)University of São Paulo, Piracicaba, Brazil, Martinez3, Angela Van de Wouw4, Sarah Lorberg1, Satomi Hayashi1, David (2)Mendelics Análise Genômica, São Paulo, Brazil Edwards1 and Jacqueline Batley1, (1)University of Queensland, Brisbane, Australia, (2)Australian Centre for Plant Functional Genomics, Brisbane, Australia, (3)Australian Centre for Plant Functional Genomics, University of P0467: Genome Mapping, Tagging & Characterization: Microbes and Queensland, Brisbane, Australia, (4)School of Botany, Melbourne, Australia Pathogens - Odd

Characterization of Stripe Rust Isolates from Western Canada Using NGS P0470: Genome Mapping, Tagging & Characterization: Microbes and André Laroche, Michele Frick, Byron Puchalski, Eric Amundsen, Brent Pathogens - Even Puchalski, Harpinder Randhawa, Robert Graf and Denis Gaudet, Agriculture Using Genotyping-By-Sequencing to Study the Population Genomics of the and Agri-Food Canada, Lethbridge, AB, Canada Plant Pathogen Fusarium graminearum

Christopher Toomajian, Wei Yue and John F Leslie, Kansas State University, P0468: Genome Mapping, Tagging & Characterization: Microbes and Manhattan, KS Pathogens - Even

Mitochondrial Genome Evolution in Species Causing Ascochyta Blight in Pulses - Ascochyta and Peyronellaea Species P0471: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Odd Wing Yee Liu, Chala J Turo, Angela H Williams and Judith Lichtenzveig, Phylogenetic Relationships of Escherichia coli Isolates Associated with Curtin University, WA, Australia Bovine Fecal and Milk Samples

Mohamed Ismail AlHazmi, King Saud University, Department of food Science, College of Food Science, Riyadh, Saudi Arabia, Hassan A Hemeg Hemeg, Department of Medical Technology/Microbiology, College of Applied Sciences,, Madinah, Saudi Arabia, Saudi Arabia and Ihab Mohamed Moussa, King Saud University, Riyadh, Saudi Arabia

P0472: Genome Mapping, Tagging & Characterization: Microbes and P0475: Genome Mapping, Tagging & Characterization: Microbes and Pathogens - Even Pathogens - Odd Mining of a Plant Pathogen Genome to Identify Candidate WY-Domain Ancient DNA Analysis of 5,000 Year Old Wheat and Barley Seeds from Containing Pathogenicity Proteins Armenia Reveal Insights into Fungal Pathogens and Wine-Making Culture in the Late Chalcolithic Kelsey Wood, Juliana Gil, Lida Derevnina, Joan Wong and Richard Michelmore, Genome Center, University of California, Davis, CA James M Breen1, Mark T Rabanus-Wallace1, Boris Gasparyan2, Ron Pinhasi3, 1 1 Michael J Wilkinson and Alan Cooper , (1)University of Adelaide, Adelaide, Australia, (2)National Academy of Sciences of Armenia, Yerevan, Armenia, P0473: Genome Mapping, Tagging & Characterization: Microbes and (3)University College Dublin, Dublin, Ireland Pathogens - Odd

Genomic Characterization of Plant-Selected Microsymbionts in the Fabeae Legume Tribe: The Pangenome of Rhizobium leguminosarum bv viciae P0476: Other Category - Even Comparative Analysis of Transcriptomes Connected with Sex Expression Beatriz Jorrín, Universidad Politecnica de Madrid, Pozuelo de Alarcon, Spain in Cucumber and Juan Imperial, Universidad Politecnica de Madrid and CSIC, Pozuelo de Alarcon, Spain Magdalena Pawelkowicz, Michal Krzysztof Wojcieszek, Pawe& Osipowski, Wojciech Plader and Zbigniew Przybecki, Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, P0474: Genome Mapping, Tagging & Characterization: Microbes and Warsaw, Poland Pathogens - Even

Mapping and Characterization of Pyrenophora teres f maculata Virulence Provides Needed Information for Breeding Durable Spot Form Net Blotch P0477: Other Category - Odd Resistance Competence Center for Doubled Haploid Research Steven A Carlsen1, Jonathan Richards1, Anjan Neupane1, Robert S Thomas Lubberstedt, Iowa State University, Ames, IA and Martin Bohn, Brueggeman1 and Timothy L Friesen2, (1)Department of Plant Pathology, University of Illinois, Urbana, IL, Urbana, IL North Dakota State University, Fargo, ND, (2)USDA-ARS, Fargo, ND P0478: Other Category - Even Life Sciences Cyberinfrastructure at Your Fingertips: Using Internet2 to Power Scientific Collaboration Daniel B Taylor, Internet2, Washington, DC

241 P0479: Other Category - Odd P0484: Genome Mapping, Tagging & Characterization: Rice - Even A Genome Wide Epigenetic Study of Hexaploid Wheat Resequencing of Rice Coreset Deciphers the Milestones for Breeding and Population Structures of Korean Rice Laura Gardiner, Mark Quinton-Tulloch, Lisa Olohan, Jonathan Price, Neil Hall and Anthony Hall, University of Liverpool, Liverpool, United Kingdom Tae-Sung Kim1, Qiang He1, ByoungKook Yun2, Min-Young Yoon1, Xiao- 1 1 1 Qiang Wang , Feng-Peng Li , Aye Aye Khaing , Rayhanul Kabir Khandakar MD1, Won-Hee Ra1, Win Htet Oo1, Cheol Soon Park1, Sun-Kyung Min1, Wei P0480: Other Category - Even Tong1, Jie Yu1, Bu-Woong Choi1, Eun-Beom Heo1, Yoo-Hyun Cho3, Young- Training Students in Analyzing Big Data : A Case of Plant Stress Sang Lee4, Kyu-Won Kim1, Chang-Yong Lee2 and Yong-Jin Park1, (1)Kongju Response National University, Chungnam, South Korea, (2)Kongju National University, Gongju-si, South Korea, (3)Seedpia, Suwon, South Korea, (4)Soonchunhyang Irina Makarevitch, Natalia Wiatros and Cameo Frechette, Hamline University, Chungnam, South Korea University, Saint Paul, MN

P0485: Genome Mapping, Tagging & Characterization: Rice - Odd P0481: Other Category - Odd The Rice Genome at Ten: Helping to Solve the 9-Billion People Question Bringing Authentic Genomics Research into the Classroom: Analysis of Maize Stress Response Baltazar Antonio, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan, Takashi Matsumoto, National Institute of Agrobiological Irina Makarevitch, Hamline University, Saint Paul, MN Sciences, Tsukuba, Japan and Takuji Sasaki, Tokyo University of Agriculture, Tokyo, Japan P0482: Other Category - Even Plant Breeding Graduate Education in Africa Via an Innovative e- P0486: Genome Mapping, Tagging & Characterization: Rice - Even Learning Partnership Draft Genome Sequences of Newly Distinguished Wild Rice Populations from Australia Anthony Assibi Mahama, Iowa State University, Ames, IA 1 1 2 Marta Brozynska , Agnelo Furtado and Robert Henry , (1)Queensland Alliance for Agriculture and Food Innovation, Brisbane, Australia, P0483: Other Category - Odd (2)University of Queensland QAAFI, Brisbane, Australia A Modular Framework for Teaching Sequencing Based Functional

Genomics to High School Students Rabi Murad, UC Irvine, Irvine, CA

P0487: Genome Mapping, Tagging & Characterization: Rice - Odd P0490: Genome Mapping, Tagging & Characterization: Rice - Even Rapid Full-Length IsoSeq cDNA Sequencing of Rice mRNA to Facilitate Construction of Six Oryza sativa x O rufipogon Chromosome Segment Annotation and Identify Splice-Site Variation Substitution Line (CSSL) Libraries Rod A Wing, University of Arizona, Arizona Genomics Institute, Tucson, AZ Ehsan Shakiba1, Georgia C Eizenga2, Namrata Singh3, M Liakat Ali4, 3 3 3 5 HyunJung Kim , Genevieve DeClerck , Mark Wright , Sang-Nag Ahn and Susan McCouch3, (1)University of Arkansas, Rice Research and Extension P0488: Genome Mapping, Tagging & Characterization: Rice - Even Center, Stuttgart, AR, (2)USDA-ARS Dale Bumpers National Rice Research A Chromosome Segment Substitution Library of US Weedy Rice for Center, Stuttgart, AR, (3)Cornell University, Ithaca, NY, (4)University of Genetic Dissection of Complex Agronomic and Domestication Traits Nebraska, Dep of Agronomy and Horticulture, Lincoln, NE, (5)Dept of Agronomy, Chungnam National University, Daejeon, South Korea Prasanta K Subudhi1, Teresa DeLeon1, Pradeep Singh2, Arnold Parco1 and 1 Marc A Cohn , (1)Louisiana State University Agricultural Center, Baton Rouge, LA, (2)Indian Agricultural Research Institute, New Delhi, India P0491: Genome Mapping, Tagging & Characterization: Rice - Odd Oryzabase: Enhancing the Search Functionality with Genes and Image Gallery P0489: Genome Mapping, Tagging & Characterization: Rice - Odd High-Throughput SNP Genotyping for Crop Improvement Kyohei Matsuno, Mika Nagahora, Gaku Kimura, Rie Tsuchiya and Yukiko Yamazaki, National Institute of Genetics, Mishima, Japan Michael J Thomson1, Maria Ymber V Reveche1, Christine Jade Dilla-Ermita1, 1 1 Nadia Vieira Castañeda , Geraldine Ann V Malitic-Layaoen , Geisha Shaina Lyn B Sanchez1, Maria S Dwiyanti1, Venice Margarette Juanillas1, Ramil P P0492: Genome Mapping, Tagging & Characterization: Rice - Even 1 1 1 2 Mauleon , Joong Hyoun Chin , Bertrand Collard , Susan McCouch and Eero Consideration of O Rufipogon Diversity with a SNP Database Nissila1, (1)International Rice Research Institute, Metro Manila, Philippines, (2)Cornell University, Ithaca, NY Hajime Ohyanagi1, Toshinobu Ebata2, Xuehui Huang3, Hong Gong3, 1 4 4 3 Masahiro Fujita , Atsushi Toyoda , Asao Fujiyama , Zi-Xuan Wang , Bin Han3, Yukiko Yamazaki5 and Nori Kurata1, (1)Plant Genetics Laboratory, National Institute of Genetics, Mishima, Japan, (2)DYNACOM Co,Ltd, Chiba, Japan, (3)National Center for Gene Research,SIBS,CAS, Shanghai, China, (4)Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Japan, (5)National Institute of Genetics, Mishima, Japan

242 P0493: Genome Mapping, Tagging & Characterization: Rice - Odd P0496: Genome Mapping, Tagging & Characterization: Rice - Even KitBase: A Fully Indexed Rice Genomic Resource Using 4,000 Kitaake Genome-Wide Indel Markers in Diverse Asian Rice Cultivars: Based Mutant Population Comparison Among Japanese Rice Cultivars, and Potential Application of the Promising Indel Markers Rashmi Jain, UC-Davis, Davis, CA 1 1 1 1 Sun Hee Choi , Hiroaki Sakai , Jianzhong Wu , Tsuyu Ando , Ayahiko Shomura1, Masahiro Yano2, Shuichi Fukuoka1 and Jun-ichi Yonemaru1, P0494: Genome Mapping, Tagging & Characterization: Rice - Even (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)NARO Development of Diagnostic DNA Markers for Prediction of Cooked Rice Institute of Crop Science (NICS), Tsukuba, Japan Taste in Indica Rice Yunjoo Lee1, Puji Lestari2 and Hee-Jong Koh1, (1)Seoul National University, P0497: Genome Mapping, Tagging & Characterization: Rice - Odd Seoul, South Korea, (2)Indonesian Center for Agricultural Biotechnology and Research to Dramatically Improve Rice Leaf Photosynthesis with Marker Genetic Resources Research and Development, Bogor, Indonesia Assisted Selection

Shunsuke Adachi1, Takayuki Ochiai2, Risako Ao2, Toshiyuki Takai3, P0495: Genome Mapping, Tagging & Characterization: Rice - Odd Motohiko Kondo3, Toshio Yamamoto4 and Tadashi Hirasawa5, (1)NARO Optimization of Seed Germinability for Direct Seeding By Stacking QTLs Institute of Crop Science, JST PRESTO, Tsukuba, Japan, (2)Graduate School in Rice of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Japan, (3)NARO Institute of Crop Science, Tsukuba, Japan, (4)National Institute of 1 1 2 Takuya Yamaguchi , Yukihide Iyama , Kazuhiko Sugimoto , Motoyasu Agrobiological Science, Tsukuba, Japan, (5)Tokyo University of Agriculture 3 1 1 1 Omoteno , Kenji Fujita , Kazumasa Murata and Takeshi Ebitani , (1)Toyama and Technology, Fuchu, Japan Prefectural Agricultural, Forestry & Fisheries Research Center, Toyama, Japan,

(2)National Institute of Agrobiological Sciences, Tsukuba, Japan, (3)Ministry of Agriculture, Forestry and Fisheries, Chiyoda-ku, Japan P0498: Genome Mapping, Tagging & Characterization: Rice - Even Genome-Wide Analysis of microRNAs Associated with Flower Development in Rice Dong-Hoon Jeong, Hallym University, Chuncheon, South Korea

P0499: Genome Mapping, Tagging & Characterization: Rice - Odd P0503: Genome Mapping, Tagging & Characterization: Rice - Odd Some Genes in a NAC Transcription Factor Family Play Cooperated Roles Natural Variations in Sdr1 Improve Resistance to Preharvest Sprouting in the Developmental Process of Rice Plant Through Involvement of Mitogen-Activated Protein Kinase Kinase Kinase in Rice Shoshi Kikuchi, National Inst Agrobiological Sciences, Tsukuba, Japan 1 2 2 Yoshinobu Takeuchi , Kazuhiko Sugimoto , Utako Yamanouchi and Masahiro Yano1, (1)NARO Institute of Crop Science, Tsukuba, Japan, P0500: Genome Mapping, Tagging & Characterization: Rice - Even (2)National Institute of Agrobiological Sciences, Tsukuba, Japan The Role of OsELF3-1 in Flowering-Time Control Has Differentiated During Evolution of Rice P0504: Genome Mapping, Tagging & Characterization: Rice - Even Hironori Itoh, Yuri Tanaka and Takeshi Izawa, National Institute of Deformation of Root Cortex Cells during Rice Lateral Root Emergence: Agrobiological Sciences, Tsukuba, Japan Examination of Cell Wall Remodeling during Development

Laura Bartley, University of Oklahoma, Norman, OK and Timothy Pegg, P0501: Genome Mapping, Tagging & Characterization: Rice - Odd Univestiy of Oklahoma, Norman, OK Time-Series Analysis of RNA Profiles During Rice Endosperm Development P0505: Genome Mapping, Tagging & Characterization: Rice - Odd Teh-yang Hwa1, Li-yu Daisy Liu1, Meng-ying Lin1, Yong-pei Wu2 and Yann- 1 Expression Analysis of High Zinc Rice Breeding Lines Using Known rong Lin , (1)Department of Agronomy, National Taiwan University, Taipei, Homeostasis Genes Involved in Iron and Zinc Acquisition and Taiwan, (2)Chiayi Agricultural Experiment Station, Taiwan Agricultural Translocation Research Institute, Chiayi, Taiwan 1 1 1 Prabhjit Chadha-Mohanty , Jessica D Rey , Perigio B Francisco , Parminder S Virk2, Md Alamgir Hossain1 and Mallikarjuna Swamy1, (1)International Rice P0502: Genome Mapping, Tagging & Characterization: Rice - Even Research Institute, Makati City, Philippines, (2)International Center for Mapping of Main and Epistatic QTLs and QTL by Environment Tropical Agriculture, Hyderabad, India Interaction for Rice Grain Yield and Yield Components Under Well Watered and Drought Stress Conditions P0506: Genome Mapping, Tagging & Characterization: Rice - Even Hamid Dehgani, Tarbiat Modares University, Tehran, Iran, Mehdi Rahimi, Inheritance of the Photoperiod Thermo-Sensitive Genetic Male Sterility in Institute of Science and High Technology and Environmental Sciences, Rice and Evaluation of SNP-Based Markers in Two-Gene Recessive Model Kerman, Iran, Babak Rabiei, University of Guilan, Rasht, Iran and Ali R Tarang, Agricultural Biotechnology Research Institute of North of Iran, Rasht, Christian De Guzman, Louisiana State University Agricultural Center, Baton Iran Rouge, LA

243 P0507: Genome Mapping, Tagging & Characterization: Rice - Odd P0510: Genome Mapping, Tagging & Characterization: Rice - Even QTL for Rice Heat Tolerance in Different Genetic Backgrounds Genome Wide Association Study (GWAS) and Identification of Novel Rice Blast Resistance Genes Edilberto D Redoña, Mississippi State University, Stoneville, MS and Changrong Ye, International Rice Research Institute, Manila, Philippines Feng-Peng Li1, Won-Hee Ra1, Kyu-Won Kim1, Tae-Sung Kim1, Yong-Jin 1 2 Park and Il-Pyung Ahn , (1)Kongju National University, Yesan, South Korea, (2)Rural Development Administration, Jeonju, South Korea P0508: Genome Mapping, Tagging & Characterization: Rice - Even

Identification, Characterization and Validation of Salt Tolerance Determinants in Rice (Oryza sativa L) Landrace Horkuch and Its P0511: Genome Mapping, Tagging & Characterization: Rice - Odd Segregating Population Insights into the Rice Responsive Transcriptome Against Twelve Abiotic Stress and Plant Hormone Treatments Taslima Haque1, Samsad Razaque1, Sabrina Moriom Elias2, Md Sazzadur Rahman3, Sudip Biswas1, Sumaiya Farah Khan1, Thomas Jeunger4, Harkamal Yoshihiro Kawahara1, Youko Oono1, Hiroyuki Kanamori1, Hironobu Walia5, Abdelbagi M Ismail6 and Zeba Islam Seraj1, (1)University of Dhaka, Wakimoto2, Takashi Matsumoto1 and Takeshi Itoh1, (1)National Institute of Dhaka, Bangladesh, (2)University of Nebraska Lincoln, Austin, TX, Agrobiological Sciences, Tsukuba, Japan, (2)BITS Co, Ltd, Tokyo, Japan (3)Bangladesh Rice Research Institute, Dhaka, Bangladesh, (4)University of Texas at Austin, Austin, TX, (5)Univeristy of Nebraska-Lincoln, Lincoln, NE, (6)International Rice Research Institute, Manila, Philippines P0512: Genome Mapping, Tagging & Characterization: Rice - Even Development of Disease Resistant Rice Using Whole Genome Sequencing and Standard Breeding Methods P0509: Genome Mapping, Tagging & Characterization: Rice - Odd 1 1 2 Mapping for the Quantitative Trait Loci (QTL) for Tolerance of Yamid Sanabria , James Oard and Don Groth , (1)Louisiana State University Anaerobic Germination in Rice (Oryza sativa L) Using SNP Genotyping Agricultural Center, Baton Rouge, LA, (2)Rice Research Station, Louisiana State University, Rayne, LA 1 2 2 Miriam D Baltazar , Juan Carlos I Ignacio , Michael J Thomson , Abdelbagi M Ismail2, Endang M Septiningsih2 and Merlyn S Mendioro3, (1)Cavite State University, Cavite, Philippines, (2)International Rice Research Institute, P0513: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Manila, Philippines, (3)University of the Philippines Los Ba'os, Los Ba'os, Millet, Sugar Cane, and related - Odd Philippines Assembling Maize Inbred CML247: The Maize Pan-Genome Takes Off

1 1 1 1,2 Fei Lu , Robert Bukowski , Qi Sun and Edward S Buckler , (1)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (2)USDA-ARS-Cornell University, Ithaca, NY

P0514: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0517: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Millet, Sugar Cane, and related - Odd Genome Wide Assessment of Maize Genebank Diversity; Synthesis of Next Integrating Hyperspectral Reflectance Spectroscopy into the Field Generation Technologies and GIS Based Approaches Phenotyping Toolkit - A Case Study in Maize Subjected to Elevated [Ozone] in the US Mid-West Sarah Hearne1, Jorge Franco2, Jiafa Chen1, Carolina Paola Sansaloni1, Cesar Daniel Petroli3, Andrzej Kilian4 and Kai Sonder1, (1)CIMMYT - International Craig Yendrek1, Tiago Tomaz1, Christopher Montes1, Gorka Erice1, Lorena Maize and Wheat Improvement Centre, El Batan, Mexico, (2)Facultad de Rios-Acosta1, Patrick J Brown1, Andrew DB Leakey1 and Elizabeth A Agronomia, UDELAR, Paysandu, Uruguay, (3)CIMMYT, Tepatitlán de Ainsworth2, (1)University of Illinois at Urbana-Champaign, Urbana, IL, Morelos, Jalisco, Mexico, (4)Diversity Arrays Technology Pty Ltd, Yarralumla, (2)USDA ARS, Urbana, IL Australia P0518: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0515: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Millet, Sugar Cane, and related - Odd Leaf-Level Hyperspectral Reflectance As a Tool for Measuring Genome Wide Association Study for Nine Plant Architecture Traits in Photosynthetic Capacity in C4 Grasses Sorghum bicolor Rachel E Paul, University of Illinois, Urbana, IL, Darshi Banan, University of Jing Zhao, Iowa State University, AMES, IA Illinois Urbana Champaign, Urbana, IL, Shawn P Serbin, Brookhaven National Laboratory, Upton, NY, Max J Feldman, Donald Danforth Center Plant Science Center, Creve Coeur, MO, Ivan Baxter, USDA-ARS, Danforth Plant Science P0516: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Center, St Louis, MO and Andrew DB Leakey, University of Illinois at Millet, Sugar Cane, and related - Even Urbana-Champaign, Urbana, IL Identification and Development of Data Standards for Maize Field Phenotypic Measurements: Working with the GxE Subgroup of the Genomes2Fields Initiative P0519: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Genomes to Fields Consortium1, Jack Gardiner2, Darwin Capmbell3 and 3 de novo Assembly of a Complex Panicoid Grass Genome Using Ultra-Long Carolyn J Lawrence , (1)University of Wisconsin-Madison, Madison, WI, PacBio Reads with P6C4 Chemistry (2)Plant Genomics Outreach Consortium, Tucson, AZ, (3)Iowa State University, Ames, IA 50011, IA Robert VanBuren1, Todd C Mockler2, Jenny Gu3, Todd P Michael4, Richard 3 5 Hall and Kristi Spittle Kim , (1)Danforth Plant Science Center, St Louis, MO, (2)Donald Danforth Plant Science Center, Saint Louis, MO, (3)Pacific Biosciences, Menlo Park, CA, (4)IBIS Biosciences, Carlsbad, CA, (5)Pacific Biosciences, Menlo park, CA

244 P0520: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0523: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Millet, Sugar Cane, and related - Odd The Teosinte (Zea mays ssp parviglumis) de novo Genome Assembly A Single Nucleotide Insertion in a FatB Gene Is Responsible for Reducing Saturated Fatty Acids in Maize Seed Oil Arun S Seetharam1, Zhihong Lang2, Zachary Lemmon3, Andrew J Severin1, John Doebley4, Jinsheng Lai5 and Matthew B Hufford1, (1)Iowa State Peizhong Zheng1, Md A Babar2, Sai Parthasarathy1, Ryan Gibson1, Kelly University, Ames, IA, (2)School of Life Science and Engineering, Southwest Parliament1, Josh Flook1, Thomas Patterson1, Peter D Friedemann1, Siva University of Science and Technology, Mianyang, China, Biotechnology Kumpatla1 and Steve Thompson1, (1)Dow AgroSciences, Indianapolis, IN, Research Institute/The National Key Facility for Crop Gene Resources and (2)Univsersity of Florida, Gainesville, FL Genetic Improvement,, Beijing, China, (3)Genetics Department, University of Wisconsin, Madison, WI, (4)University of Wisconsin, Madison, WI, (5)State Key Lab of Agrobiotechnology, China Agricultural University, Beijing, China P0524: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even

Development and Characterization of Simple Sequence Repeat Markers P0521: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Providing Genome-Wide Coverage and High Resolution in Maize Millet, Sugar Cane, and related - Odd China Golden Marker (Beijing) Biotech Co, Ltd - A Pioneer in High- Ling Liu, Sichuan Agricultural University, wenjiang, China Throughput Genotyping Service in China Runchun Jing, China Golden Marker (Beijing) Biotech Co, Ltd, Beijing, China and Hong Lu, China Golden Marker Biotechnology Co Ltd, Beijing, China

P0522: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Discovery and Mapping of Presence-Absence Variants (PAV) in the Founders of the Maize NAM Population Alina Ott1, Cheng-Ting Yeh2, Wei Wu2, Jeffrey A Jeddeloh3, Sam Benidt1, Dan Nettleton1 and Patrick S Schnable2, (1)Iowa State University, Ames, IA, (2)Department of Agronomy, Iowa State University, Ames, IA, (3)Roche NimbleGen, Madison, WI

P0525: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0527: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Millet, Sugar Cane, and related - Odd

Epigenetic Characteristics and Gene Expression Analysis of a de novo Development of S1 Inbred Lines and Estimating the Inbreeding Depression Centromere in Maize in Two Populations of Maize (Zea mays L)

Handong Su1, Yalin Liu2, Yong-Xin Liu3, Zhenling Lv4, Hongyao Li5, Zia Ullah1, Mukhtar Alam1, Hidayat Ullah1 and Wasif U Khan2, (1)The Shaojun Xie5, Zhi Gao6, Junling Pang7, Xiu-Jie Wang8, Jinsheng Lai9, Fangpu University of Swabi, Swabi, Pakistan, (2)The University of Agriculture, Han4 and James A Birchler10, (1)Institute of Genetics and Developmental Peshawar, Pakistan Biology, Beijing, China, (2)Institute of Genetics and Developmental Biology, Beijing, China, (3)Institute of Genetics and Developmental biology, BeiJing, China, (4)Chinese Academy of Sciences, Beijing, China, (5)University of P0528: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Chinese Academy of Sciences, Beijing, China, (6)University of Missouri- Millet, Sugar Cane, and related - Even Columbia, Columbia, MO, (7)institute of genetics and developmental biology, Recombination in Maize is Stable, Predictable, and Associated with beijing, China, (8)Institute of Genetics and Developmental Biology, Chinese Genetic Load: A Study of the US and Chinese Maize NAM Populations Academy of Sciences, beijing, China, (9)State Key Lab of Agrobiotechnology, China Agricultural University, Beijing, China, (10)University of Missouri, Eli Rodgers-Melnick, Cornell University, Ithaca, NY, Peter Bradbury, Cornell Columbia, MO University/USDA-ARS, Ithaca, NY and Edward S Buckler, Institute for Genomic Diversity, Cornell University, Ithaca, NY

P0526: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even P0529: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Transcriptome Analysis of Maize Inbred Lines Reveals Important Shifts in Gene Expression Between Parents, Hybrids, and Isonuclear Lines Patterns of Demography and Selection During and Since Maize Domestication Ovidiu Balacescu1, Loredana Balacescu1, Ioan Has2, Voichita Has2, Dana 1 2 2 1 Suteu3, Remy Bruggmann4 and Mihai Miclaus4, (1)The Oncology Institute Timothy Beissinger , Li Wang , Matthew Hufford and Jeffrey Ross-Ibarra , "Prof Dr Ion Chiricuta", Cluj-Napoca, Romania, (2)Agricultural Research and (1)University of California, Davis, CA, (2)Iowa State University, Ames, IA Development Station, Turda, Romania, (3)National R&D Institute for Biological Sciences, Cluj-Napoca, Romania, (4)University of Bern, Bern, P0530: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Switzerland Millet, Sugar Cane, and related - Even

Genomewide Predictions for Backcrossing a Quantitative Trait from an Exotic to an Adapted Line Rex Bernardo, University of Minnesota, St Paul, MN

245 P0531: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0534: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Millet, Sugar Cane, and related - Even Inference of Maize Population History during Migration to Highland The Small RNA Landscape of Maize Meiosis Habitats Stefanie Dukowic-Schulze1, Anitha Sundararajan2, Joann Mudge3, Wojtek Li Wang1, Timothy Beissinger2, Jeffrey Ross-Ibarra2 and Matthew Hufford1, Pawlowski4 and Changbin Chen1, (1)University of Minnesota, St Paul, MN, (1)Iowa State University, Ames, IA, (2)University of California, Davis, CA (2)National Center for Genome Resources, Santa Fe, NM, (3)National Center for Genome Resources (NCGR), Santa Fe, NM, (4)Cornell University, Ithaca, NY P0532: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Marker Assisted Breeding to Improve Grain Yield and Drought Tolerance P0535: Genome Mapping, Tagging & Characterization: Maize, Sorghum, in Tropical Maize Millet, Sugar Cane, and related - Odd Assessing Nitrogen Metabolism Using Genome-Scale Models in Maize Yoseph Beyene Aydagn1, Kassa Semagn1, José Crossa2, Stephen Mugo3, Gary Atlin4, Amsal Tarekegne3, Barbara Meisel3, Pierre Sehabiague3, Bindiganavile Margaret Simons1, Rajib Saha2, Nardjis Amiour3, Akhil Kumar1, Lena(g S Vivek3, Sylvester Oikeh3, Gregorio Alvarado5, Gregorio Machida5, Michael S Guillard3, Gilles Clément3, Martine Miquel3, Zhenni Li3, Grégory Mouille3, Olsen1, Boddupalli M Prasanna2 and Marianne Banziger5, (1)CIMMYT, Peter J Lea4, Bertrand Hirel3 and Costas D Maranas1, (1)The Pennsylvania Nairobi, Kenya, (2)CIMMYT - International Maize and Wheat Improvement State University, University Park, PA, (2)Washington University in St Louis, St Centre, Mexico, (3)CIMMIT, Nairobi, Kenya, (4)Bill & Melinda Gates Louis, MO, (3)Institut Jean-Pierre Bourgin, Institut National de la Recherche Foundation, Seattle, WA, (5)CiMMIT, Nairobi, Kenya Agronomique, Versailles, France, (4)Lancaster University, Lancaster, United Kingdom P0533: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd P0536: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Genome Evolution and GC Patterns Driven By Recombination in Zea Millet, Sugar Cane, and related - Even mays Comparative Study of White Grain Candidate Maize (Zea mays L) Hybrids Anitha Sundararajan1, Stefanie Dukowic-Schulze2, Thiruvarangan Ramaraj1, Oliver Oveido1, Nathan Garcia1, Kayla Engstrom1, Madeline Kwicklis1, Saima S Ghani1, Hidayat Ullah1, Mukhtar Alam1, David A Lightfoot2, Changbin Chen2 and Joann Mudge3, (1)National Center for Genome Resources, Muhammad Y Khan3 and Muhammad Iqbal3, (1)The University of Swabi, Santa Fe, NM, (2)University of Minnesota, St Paul, MN, (3)National Center for Swabi, Pakistan, (2)Southern Illinois University, Carbondale, IL, (3)Cereal Genome Resources (NCGR), Santa Fe, NM Crops Research Institute, Nowshera, Pakistan

P0537: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0540: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Millet, Sugar Cane, and related - Even Phenotyping Maize for Drought and Low Nitrogen Tolerance in South Maize Exhibits Differential Expression and Allelic Regulatory Variation in Africa Response to Abiotic Stress

Kingstone Mashingaidze and Siphiwokuhle Shandu, Agricultural Research Amanda Waters1, Irina Makarevitch2, Candice Hirsch1, Cory D Hirsch1 and Council, Potchefstroom, South Africa Nathan M Springer1, (1)University of Minnesota, Saint Paul, MN, (2)Hamline University, Saint Paul, MN P0538: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even P0541: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Sites of Sensitivity to Oxidative Stress from Ozone Exposure in Diverse Millet, Sugar Cane, and related - Odd Maize Inbred Lines Discovery of Potential Molecular Markers for Northern Corn Leaf Blight in Maize Elizabeth A Ainsworth1, Patrick J Brown2, Andrew DB Leakey2, Lauren M McIntyre3, Ilse Barrios-Perez2, Brad Dalsing4, Gorka Erice2, Courtney Leisner2, Lebogang Angelo Madubanya1, Kingstone Mashingaidze2 and Maryke Christopher Montes2, Alison Morse3, Lorena Rios-Acosta2, Sang-In Shim5, Craven2, (1)Agricultural Research Council, Potchefstroom, South Africa, Crystal A Sorgini2, Tiago Tomaz2 and Craig Yendrek2, (1)USDA-ARS, (2)Agricultural Research Council-Grain Crops Institute, Potchefstroom, South Urbana, IL, (2)University of Illinois at Urbana-Champaign, Urbana, IL, Africa (3)University of Florida, Gainesville, FL, (4)University of Illinois Urbana- Champaign, Urbana, IL, (5)Gyeongsang National University, Jinju City, South Korea P0542: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even

Genetic Architecture of Resistance to Maize Lethal Necrosis and Maize P0539: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Streak Virus in Tropical Germplasm Millet, Sugar Cane, and related - Odd Analysis of Genome-Wide Association Data to Identify Candidate Manje Gowda, CIMMYT (International Maize and Wheat Improvement Metabolic Pathways for Aflatoxin Accumulation Resistance in Maize Center), Nairobi, Kenya

Juliet Tang, Marilyn Warburton and Paul Williams, USDA ARS Corn Host Plant Resistance Research Unit, Mississippi State, MS

246 P0543: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0546: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Millet, Sugar Cane, and related - Even Saccharum Spontaneum Gene Catalog Metabolic Engineering of Sugarcane for the Production of Oil Karina Yanagui1, Leandro Costa Nascimento1, Eduardo L O Camargo1, Je Hyeong Jung1, Janice Zale1, Jae Yoon Kim1, Bhuvan Pathak1, Baskaran Marcelo Falsarella Carazzolle1, José Antonio Bressiani2 and Gonçalo Amarante Kannan1, Ratna Karan1, Hui Liu2, Jason Candreva2, Zhiyang Zhai2, John Guimarães Pereira1, (1)Genomics and Expression Laboratory - State University Shanklin2 and Fredy Altpeter1, (1)University of Florida - IFAS, Gainesville, of Campinas - UNICAMP, Campinas, Brazil, (2)Graal Bioenergy, Campinas - FL, (2)Brookhaven National Lab, Upton, NY SP, Brazil P0547: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0544: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Millet, Sugar Cane, and related - Even Screening for Species-Specific AFLP Markers in the Saccharum Complex

Maize Gene Expression Profiling Reveals Susceptible Response Genes 1 2 3 3 during Grey Leaf Spot Fungus Cercospora zeina Infection Luciana R Pinto , Maria NG Melloni , Bruna FT Pereira , João R Manechini , Luciana Carlini-Garcia4, Mauro A Xavier5 and Marcos G A Landell6, (1)Centro Yao-Cheng Lin, VIB Department of Plant Systems Biology, Ghent University, de Cana, Instituto Agronômico, Ribeirão Preto, SP, Brazil, (2)UNESP, Ghent, Belgium, Maryke Carstens, University of Pretoria, Pretoria, South Jaboticabal, Jaboticabal, Brazil, (3)Centro de Cana - IAC, Ribeirão Preto, Africa, Yves Van de Peer, VIB Ghent University, Ghent, Belgium and Dave K Brazil, (4)Centro de Cana IAC, Ribeirão Preto, Brazil, (5)Instituto Agronomico Berger, University of Pretoria, Dept Plant Sciences, Pretoria, South Africa - Centro de Cana, Ribeirão Preto, Brazil, (6)Centro de Cana - Instituto Agronômico, Ribeirão Preto, Brazil P0545: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd P0548: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Genotypic Evaluation and Selection of Newly Developed Sugarcane Millet, Sugar Cane, and related - Even Advanced Clones for Determination of High Cane Yield, Yield Single Nucleotide Polymorphism (SNP) Discovery in the Large and Components and Quality Parameters Complex Saccharum Spp Genomes through Exome Sequencing Sajid Ali1, Hidayat Ullah1, Mukhtar Alam1, Wasif U Khan2 and Mohammad Jian Song, Xiping Yang and Jianping Wang, Agronomy Department, Sajjad3, (1)The University of Swabi, Swabi, Pakistan, (2)The University of University of Florida, Gainesville, FL Agriculture, Peshawar, Pakistan, (3)Sugar Research Crops Institute, Mardan, Pakistan

P0549: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0552: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Millet, Sugar Cane, and related - Even Analysis of Allelic Variation of Sugarcane Drought-Induced Genes Exploiting and Dissecting the Genetics of Bioenergy Sorghums Sávio S Ferreira, Biochemistry Department - University of São Paulo, São Elizabeth A Cooper1, Zach Brenton1, Brad Rauh1, Richard Boyles1, Matt Paulo, Brazil, Pablo Andrade, Institute of Chemistry - University of São Paulo, Myers1, Kelsey Zielinski1, Geoffrey Morris2 and Stephen Kresovich1, Sao Paulo, Brazil and Glaucia M Souza, Institute of Chemistry - University of (1)Clemson University, Clemson, SC, (2)Kansas State University, Manhattan, São Paulo, São Paulo, Brazil KS

P0550: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0553: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Millet, Sugar Cane, and related - Odd Identifying Marker-Trait Associations for Fiber Components in Sugarcane A High-Density SNP Genotyping Array for Genome-Based Breeding of with Simple Sequence Repeat Markers Energy Sorghum for Central Europe

Karine Kettener1, Natalia Spagnol Stabellini2, Marcia Moreno2, Itaraju Brum2, Wubishet Abebe Bekele1, Silke Wieckhorst2, Monika Kloiber-Maitz2, Torben Francisco Claudio da Conceicao Lopes2, Thiago Benatti3, Alessandro Schulz-Streeck3, Carsten Knaak3, Milena Ouzunova2, Alessandro Davassi4 and Pellegrineschi4, Karine M Oliveira5, Jorge A Da Silva6 and Celso Luis Marino7, Rod Snowdon5, (1)Justus-Liebig University Giessen, Department of Plant (1)University of São Paulo State-UNESP, Botucatu, TX, Brazil, (2)CTC, Breeding, Giessen, Germany, (2)KWS SAAT AG, Einbeck, Germany, (3)KWS Piracicaba, Brazil, (3)CTC - Centro de Tecnologia Canavieira, Piracicaba, SAAT AG, Einbeck,, Germany, (4)Affymetrix UK Ltd, High Wycombe, Brazil, (4)CTC Sugarcane Technology Center, Piracicaba, Brazil, (5)CTC United Kingdom, (5)Justus Liebig University, Giessen, Germany Sugarcane Technology Center, Piracicaba, SP, Brazil, (6)Texas A&M University, Weslaco, TX, (7)UNESP, Botucatu, SP, Sao Paulo, Brazil P0554: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even P0551: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Nested Association Mapping of Agroclimatic Traits in Sorghum Millet, Sugar Cane, and related - Odd 1 2 1 Endophytic Bacteria Gluconacetobacter diazotrophicus Regulates Nitrogen Olalere Marcus Olatoye , Sophie Bouchet and Geoffrey Morris , (1)Kansas Uptake in Sugarcane Roots State University, Manhattan, KS, (2)KSU, manhattan, KS

Layanne B Souza, Gabriela F Juliano, Joni E Lima and Antonio Figueira, University of Sao Paulo, Piracicaba, Brazil

247 P0555: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0558: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Millet, Sugar Cane, and related - Even Potential of Multiseeded Mutant (msd) to Boost Sorghum Grain Yield Mapping Staygreen QTLs for Post-Flowering Drought Tolerance in Postrainy Sorghum Zhanguo Xin1, Yinping Jiao2, Gloria Burow3, Doreen Ware4, John Burke3 and Chad Hayes3, (1)USDA ARS, Lubbock, TX, (2)Cold Spring Harbor Santosh Deshpande, ICRISAT, Hyderabad, India, Vincent Vadez, ICRISAT, Laboratory, Cold Spring Harbor, NY, (3)USDA-ARS, Lubbock, TX, (4)Cold Patancheru, India, CT Hash, ICRISAT, Niamey, Niger and Andrew H Paterson, Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY Plant Genome Mapping Laboratory, University of Georgia, Athens, GA

P0556: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0559: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Millet, Sugar Cane, and related - Odd QTL Mapping of Biomass Related Traits in Sweet Sorghum Dissecting the Genetic Basis of Height in Sorghum Using Biparental QTL Mapping Kanokwan Teingtham1, John Rajewski1, Niegel D La Borde1, Aaron Lorenz2, Kent Eskridge1, David M Braun3 and Ismail Dweikat1, (1)University of Josie L Hilley, Daryl Morishige, Ryan F McCormick, Sandra Truong, William Nebraska-Lincoln, Lincoln, NE, (2)University of Nebraska–Lincoln, Lincoln, L Rooney and John Mullet, Texas A&M University, College Station, TX NE, (3)University of Missouri, Columbia, MO P0560: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0557: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Millet, Sugar Cane, and related - Odd The Genetic Basis of Grain Yield in Sorghum Evaluation of Stay-Green QTL Combinations in Improved Sorghum Germplasm to Enhance Terminal Drought Tolerance Ashley Jean Mattison, Brock D Weers and John Mullet, Texas A&M University, College Station, TX Priyanka S Gaikwad, International Crop Research Institute for Semi-Arid Tropics (ICRISAT), Hyderabad, India, Shivaji Mehtre, VN Marathwada Krishi Vidyapeeth, Parbhani, India, Vincent Vadez, ICRISAT, Patancheru, India, CT Hash, ICRISAT, Niamey, Niger and Santosh Deshpande, ICRISAT, Hyderabad, India

P0561: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0564: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Millet, Sugar Cane, and related - Even Natural Variation in Synthesis and Catabolism Genes Influences Dhurrin Elucidation of the Genetic Components Influencing Cold Tolerance in Content in Sorghum (Sorghum bicolor L Moench) Sorghum bicolor

Chad Hayes1, Gloria Burow1, Patrick J Brown2, Zhanguo Xin1, Carrie S Niegel D La Borde, University of Nebraska-Lincoln, Lincoln, NE 3 1 Thurber and John Burke , (1)USDA-ARS, Lubbock, TX, (2)University of Illinois at Urbana-Champaign, Urbana, IL, (3)University of Illinois at Urbana- Champaign, urbana, IL P0565: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd

Genome-Wide Analysis of NBS-LRR-Encoding Genes in Sorghum and P0562: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Comparative Sequence Analysis of NBS-LRR-Encoding Genes in Grass Millet, Sugar Cane, and related - Even Species Fine Genetic Mapping of Combined Shoot Fly Resistance (SFR) and Stay Green (STG) Traits on Sorghum Chromosome SBI-10 Xiping Yang and Jianping Wang, Agronomy Department, University of Florida, Gainesville, FL 1 2 3 4 K N S Usha Kiranmayee , Hari Sharma , P B Kavi Kishor , Ramu Punna , Sivasubramani Selvanayagam5, Rajendra Munghate1, Sandeep A Sakhale1, CT Hash6 and Santosh Deshpande1, (1)ICRISAT, HYDERABAD, India, P0566: Genome Mapping, Tagging & Characterization: Maize, Sorghum, (2)ICRISAT, Hyderabad, India, (3)Osmania University, Hyderababd, India, Millet, Sugar Cane, and related - Even (4)Institute for Genomic Diversity, Cornell University, Ithaca, NY, Genome-Wide Association Analysis for Fe and Zn Concentration in (5)ICRISAT, Hyderababd, India, (6)ICRISAT, Niamey, Niger Sorghum Grains Identifies the Potential Candidate Genes for Sorghum Biofortification P0563: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Kotla Anuradha1, Ramu Punna2, Trushar Shah3, BhanuPrakash Amindala3, Millet, Sugar Cane, and related - Odd Sivasubramani Selvanayagam4, Abhishek Rathore3, CT Hash5, Stefania 3 3 6 Genomic Analysis of a Sorghum NAM Population and High Resolution Grando , AshokKumar A and Santosh Deshpande , (1)International Crops Mapping of Flowering Time Research Institute for the Semi-Arid-Tropics, Hyderabad, India, (2)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (3)ICRISAT, Hyderabad, Sophie Bouchet1, MO Olalere1, SR Maria1, B Wempe1, R Perumal1, Tesfaye T India, (4)ICRISAT, Hyderababd, India, (5)ICRISAT, Niamey, Niger, Tesso1, Mitch Tuinstra2, Jianming Yu1 and Geoffrey Morris1, (1)Kansas State (6)ICRISAT, Hyderabad, India University, Manhattan, KS, (2)Purdue University, West Lafayette, IN

248 P0567: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0569: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Odd Millet, Sugar Cane, and related - Odd Mapping QTLs Associated with Grain Iron and Zinc in Sorghum Rapid Hemispherical Photographic Phenotyping of Productivity and (Sorghum bicolor L Moench) Canopy Dynamics in a Setaria RIL Population

Rahul M Phuke1, Kotla Anuradha2, Kanwar Sahrawat3, Farzana Jabeen4, Darshi Banan1, Mark Holmes1, Hannah Schlake1, Rachel E Paul2, Max J Radhika Kommineni4, AshokKumar A3 and Santosh Deshpande5, Feldman3, Ivan Baxter4 and Andrew DB Leakey5, (1)University of Illinois (1)International Crop Research Institute for Semi-Arid Tropics (ICRISAT), Urbana Champaign, Urbana, IL, (2)University of Illinois at Urbana- Hyderabad, India, (2)International Crops Research Institute for the Semi-Arid- Champaign, Urbana, IL, (3)Donald Danforth Center Plant Science Center, Tropics, Hyderabad, India, (3)ICRISAT, Hyderabad, India, (4)ANGRAU, Creve Coeur, MO, (4)USDA-ARS, Danforth Plant Science Center, St Louis, Hyderabad, India, (5)ICRISAT, Hyderabad, India MO, (5)University of Illinois, Urbana, IL

P0568: Genome Mapping, Tagging & Characterization: Maize, Sorghum, P0570: Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related - Even Millet, Sugar Cane, and related - Even NGS Assisted Genome Wide Discovery of Polymorphisms Among Sequence-Enabled Genetics in Setaria viridis: A Model System for the Landraces of Foxtail Millet (Setaria italica L) Grasses Akila Chandra Sekhar1, Palakurthi Ramesh1, K V N Rathnakar Reddi2, Hui Jiang1, Pu Huang1, Jeremy Schmutz2, Kerrie W Barry3, Anna Lipzen3, Chandra Obul Reddy Puli1, Lachagari V B Reddy3, Gurulakshmi Kola1, Pandit Xiaoping Li1 and Thomas P Brutnell1, (1)Donald Danforth Plant Science Varakumar1, B Jayanna Naik1, CVC Mohan Reddy4 and Arjula R Reddy5, Center, St Louis, MO, (2)HudsonAlpha Institute for Biotechnology, Huntsville, (1)Yogi Vemana University, Kadapa, India, (2)Acharya Nagarjuna University, AL, (3)DOE Joint Genome Institute, Walnut Creek, CA Guntur, India, (3)SciGenom Labs Pvt Ltd,, Kochi, India, (4)RARS, Nandyal, India, (5)University of Hyderabad, Hyderabad, India P0571: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd The International Wheat Genome Sequencing Consortium (IWGSC) Kellye Eversole, IWGSC, Bethesda, MD and The International Wheat Genome Sequencing Consortium, IWGSC, Lee's Summit, MO

P0572: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0575: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Towards a Functional Durum Wheat Genome Assembly A High-Density, SNP-Based Consensus Map of Tetraploid Wheat

1 1 1 1 2 (Triticum turgidum L) Useful for Durum and Bread Wheat Genomics and Assaf Distelfeld , Raz Avni , Moran Nave , Inbal Hamerman , Kobi Baruch Breeding and Omer Barad2, (1)Faculty of Life Sciences - Tel Aviv University, Tel Aviv, Israel, (2)NRGENE LTD, Ness-Ziona, Israel Marco Maccaferri1, Andrea Ricci2, Silvio Salvi1, Sara G Milner1, Enrico 2 3 4 5 6 Noli , Pierluigi Martelli , Rita Casadio , Eduard Akhunov , Simone Scalabrin , Vera Vendramin7, Karim Ammar8, Antonio Blanco9, Francesca Desiderio10, P0573: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Assaf Distelfeld11, Jorge Dubcovsky12, Tzion Fahima13, Justin D Faris14, and related - Odd Abraham B Korol15, Andrea Massi16, Anna-Maria Mastrangelo17, Michele Combining Field Phenotyping and Next Generation Genetics to Uncover Morgante18, Curtis Pozniak19, Amidou N'Diaye19, Steven S Xu14 and Roberto Markers, Genes and Biology Underlying Drought Tolerance in Wheat Tuberosa1, (1)DipSA - University of Bologna, Bologna, Italy, (2)DipSA- University of Bologna, Bologna, Italy, (3)Biocomputing Group-University of Anthony Hall, University of Liverpool, Liverpool, United Kingdom Bologna, Bologna, Italy, (4)Biocomputing Group, University of Bologna, Bologna, Italy, (5)Kansas State University, Manhattan, KS, (6)IGA Technology Services, Udine, Italy, (7)Istituto di Genomica Applicata, Udine, P0574: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Italy, (8)CIMMYT, Mexico, DF, Mexico, (9)University of Bari, Bari, Italy, and related - Even (10)CRA Genomics Research Centre, Fiorenzuola d'Arda, Italy, (11)Faculty of Construction of Whole-Genome BioNano Maps for Aegilops tauschii, the D Life Sciences - Tel Aviv University, Tel Aviv, Israel, (12)University of Genome Progenitor of Wheat California Davis, Davis, CA, (13)University of Haifa, Haifa, Israel, (14)USDA- ARS, Fargo, ND, (15)Institute of Evolution, University of Haifa, Haifa, Israel, Tingting Zhu, Karin R Deal, Armond Murray, Sonny Van and Ming-Cheng (16)Società Produttori Sementi Bologna, Argelato, Italy, (17)Consiglio per la Luo, Department of Plant Sciences, University of California, Davis, CA Ricerca e sperimentazione in Agricoltura-Cereal Research Centre, Foggia, Italy, (18)Università di Udine, Udine, Italy, (19)University of Saskatchewan, Saskatoon, SK, Canada

249 P0576: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0579: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Generating a Reference Sequence for Aegilops tauschii: First-Pass A First Consensus Genetic Map of Intermediate Wheatgrass (Thinopyrum Annotation of Chromosomes 1D, 2D and 3D intermedium) has Broad Implications for Wheat Improvement and the Contemporary Domestication of a Perennial Cereal Crop Hao Wang1, Thomas Wicker2, Matthias Pfeifer3, Klaus F X Mayer3, Jeffrey L Bennetzen4 and Katrien M Devos1, (1)Institute of Plant Breeding, Genetics and Traci R Kantarski, University of Chicago, Chicago, IL Genomics, and Dept of Plant Biology, University of Georgia, Athens, GA, (2)Institute of Plant Biology, University of Zurich, Zurich, Switzerland, (3)Plant Genome and Systems Biology, Helmholtz Center Munich, P0580: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Neuherberg, Germany, (4)Department of Genetics, University of Georgia, and related - Even Athens, GA Superscaffolding of Bread Wheat Survey Sequence Assemblies

1 1 1 2 David J F Konkin , Chu Shin Koh , Carling Clarke , Curtis J Pozniak and P0577: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Andrew G Sharpe1, (1)National Research Council of Canada, Saskatoon, SK, and related - Odd Canada, (2)University of Saskatchewan, Saskatoon, SK, Canada Assembly Strategy for the BAC Pool Sequencing of Aegilops tauschii, the Ancestor of the Wheat D Genome P0581: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Daniela Puiu1, Geo Pertea1, Karin R Deal2, Yong Q Gu3, Naxin Huo2, Jan and related - Odd Dvorak2 and Steven L Salzberg1, (1)Johns Hopkins University, School of Single Cell Genomic Sequencing in Wheat: Application in Monitoring Medicine, Baltimore, MD, (2)Department of Plant Sciences, University of Recombination Frequency California, Davis, CA, (3)USDA ARS, Western Regional Research Center, Albany, CA Sateesh Kagale, Pankaj Bhowmik, Patricia L Polowick, Alison MR Ferrie and Andrew G Sharpe, National Research Council Canada, Saskatoon, SK, Canada

P0578: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even DHPLC Technology As a High-Throughput Detection of Mutations in a Durum Wheat Tilling Population Pasqualina Colasuonno1, Ornella Incerti1, Maria Luisa Lozito1, Marco Sbalzarini2, Stavros Papadimitriou2, Paolo Zaccagna2, Antonio Blanco1 and Agata Gadaleta1, (1)University of Bari, Bari, Italy, (2)Transgenomic, Misano Di Gera D'Adda (BG), Italy

P0582: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0585: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Unveiling the Genomes of Wild Wheat Relatives: Dissecting the S, U, M A Dense Durum Wheat " T dicoccum Linkage Map Based on SNP and C Genomes of Aegilops into Complete Sets of Separate Chromosomes Markers for the Study of Seed Morphology, and Identification of Candidate Genes István Molnár1, Jan Vrana2, Veronika Bure#ová3, Petr Cápal3, Farkas András1, Marta Molnar-Lang1 and Jaroslav Dolezel2, (1)Agricultural Institute, Centre for Anna-Maria Mastrangelo1, Maria Anna Russo1, Donatella Bianca Maria Agricultural Research, Hungarian Academy of Sciences,, Martonvásár, Ficco1, Giovanni Laidò1, Daniela Marone1, Antonio Blanco2, Agata Gadaleta2, Hungary, (2)Institute of Experimental Botany, Olomouc, Czech Republic, Pina Ferragonio1, Valentina Giovanniello3 and Pasquale De Vita1, (1)Consiglio (3)Institute of Experimental Botany, Centre of the Region Hana for per la Ricerca e sperimentazione in Agricoltura-Cereal Research Centre, Biotechnological and Agricultural Research, Olomouc, Czech Republic Foggia, Italy, (2)Department of Soil, Plant and Food Sciences, Section of Genetic and Plant Breeding, University of Bari “Aldo Moro”, Bari, Italy, (3)COSEME srl, Foggia, Italy P0583: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Complete Chloroplast DNA Sequences of Zanduri Wheat P0586: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Mari Z Gogniashvili, Agricultural University of Georgia, Tbilisi, Georgia Macrosynthenic Relationships Between the U-, M-, S- and C-Genome Chromosomes of Aegilops and Wheat As Revealed By COS Markers P0584: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Farkas András1, István Molnár1, Jan Vrana2, Veronika Bure#ová3, Petr Cápal3, and related - Even András Cseh1, Marta Molnar-Lang1 and Jaroslav Dolezel2, (1)Agricultural Searching for Ancestral Chromosomes Fusions in Triticeae: In Case Study Institute, Centre for Agricultural Research, Hungarian Academy of Sciences,, on Hexaploid Bread Wheat Martonvásár, Hungary, (2)Institute of Experimental Botany, Olomouc, Czech Republic, (3)Institute of Experimental Botany, Centre of the Region Hana for 1 2 2 1 Arnaud Bellec , Florent Murat , Caroline Pont , Hélène Bergès and Jerome Biotechnological and Agricultural Research, Olomouc, Czech Republic Salse2, (1)INRA - CNRGV, Castanet Tolosan, France, (2)INRA Clermont-

Ferrand, Clermont-Ferrand, France

250 P0587: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0589: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Odd An Integrated Approach for the Physical Mapping of Chromosome 5A in Construction of High Density Radiation Hybrid Map of Bread Wheat Bread Wheat Chromosome 4A

Delfina Barabaschi1, Federica Magni2, Andrea Volante1, Agata Gadaleta3, Hana Barbora Klocova1, Zeev M Frenkel2, Ajay Kumar3, Shiaoman Chao4, Michael Simkova4, Simone Scalabrin2, MariaLucia Prazzoli1, Paolo Bagnaresi1, Katia Abrouk1, Schichen Wang5, Shahryar F Kianian6, Hana Simkova1, Abraham B Lacrima1, Vania Michelotti1, Francesca Desiderio1, Luigi Orrù1, Enrico Korol2, Eduard Akhunov5, Jaroslav Dolezel1 and Miroslav Valarik1, Francia5, Agostino Fricano6, Anna-Maria Mastrangelo7, Paola Tononi8, Nicola (1)Institute of Experimental Botany, Olomouc, Czech Republic, (2)Institute of Vitulo9, Zeev M Frenkel10, Federica Cattonaro2, Michele Morgante11, Antonio Evolution, University of Haifa, Haifa, Israel, (3)North Dakota State University, Blanco3, Jaroslav Dolezel4, Massimo Delledonne8, A Michele Stanca1, Luigi Fargo, ND, (4)USDA-ARS, Fargo, ND, (5)Kansas State University, Cattivelli1 and Giampiero Valè1, (1)CRA Genomics Research Centre, Manhattan, KS, (6)USDA ARS, Saint Paul, MN Fiorenzuola d'Arda, Italy, (2)Istituto di Genomica Applicata, Udine, Italy, (3)University of Bari, Bari, Italy, (4)Institute of Experimental Botany, Olomouc, Czech Republic, (5)University of Modena Reggio Emilia, Reggio P0590: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Emilia, Italy, (6)PTP parco Tecnologico Padano, Lodi, Italy, (7)Consiglio per and related - Even la Ricerca e sperimentazione in Agricoltura-Cereal Research Centre, Foggia, Physical Map and Sequence of the Wheat Chromosome Arm 7DS Italy, (8)University of Verona, Verona, Italy, (9)CRIBI Biotechnology Center, 1 2 1 3 University of Padova, Padova, Italy, (10)University of Haifa, Haifa, Israel, Helena Stankova , Ming-Cheng Luo , Zuzana Tulpova , Paul Visendi , Satomi 4 5 6 7 8 (11)IGA Istituto di Genomica Applicata, Udine, Italy Hayashi , Alex Hastie , Vijay K Tiwari , Ajay Kumar , Andrzej Kilian , Jan Barto#1, Jacqueline Batley9, David Edwards4, Jaroslav Dolezel1 and Hana 1 Simkova , (1)Institute of Experimental Botany, Olomouc, Czech Republic, P0588: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, (2)University of California, Davis, CA, (3)Australian Centre for Plant and related - Even Functional Genomics, Brisbane, Australia, (4)University of Queensland, High-Density SNP Mapping and Quantitative Trait Locus Analysis of Brisbane, Australia, (5)BioNano Genomics, San Diego, CA, (6)Kansas State Agronomic Traits in Common Wheat University, Manhattan, KS, (7)North Dakota State University, Fargo, ND, (8)Diversity Arrays Technology Pty Ltd, Canberra, Australia, (9)The Richard D Cuthbert1, Sachin Kumar1, Ron E Knox1, Fran R Clarke1, Curtis University of Western Australia, Perth, WA, Australia 2 3 1 1 Pozniak , Pierre J Hucl , Ron M DePauw and Yong He , (1)AAFC-SPARC, Swift Current, SK, Canada, (2)University of Saskatchewan, Saskatoon, SK, Canada, (3)Crop Development Centre, U of Saskatchewan, Saskatoon, Saskatchewan, SK, Canada

P0591: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0594: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even The 5DS Physical Map Provides Insights into the Wheat D-Genome CIMMYT-Wheat Seed: Characterization and Mobilizing Useful Variation Structure and Organization from Gene Bank to Breeding Pipelines

Bala Ani Akpinar1, Federica Magni2, Stuart James Lucas1, Hana Simkova3, Sukhwinder Singh1, Prashant Vikram1, Carolina Saint Pierre1, Juan Jan Safar3, Sonia Vautrin4, Helene Berges5, Federica Cattonaro6, Jaroslav Burgueño2, Huihui Li1, Gamboa Sergio Cortez3, Gaspar Estrada Campuzano4, Dolezel3 and Hikmet Budak1, (1)Sabanci University, Istanbul, Turkey, Pedro Figueroa López5, Guillermo Fuentes Dávila6, Víctor Manuel Hernández (2)Instituto di Genomica Applicata, Udine, Italy, (3)Institute of Experimental Muela6, Carolina Paola Sansaloni7, Javier Ireta Moreno6, Carlos Moisés Botany, Olomouc, Czech Republic, (4)INRA - CNRGV, Castanet Tolosan, Hernández1, Carlos Gustavo Martínez Rueda4, Leodegario Osorio Alcalá5, France, (5)Plant Genomic Center - INRA Toulouse, Castanet-Tolosan, France, Ruairidh Sawers8, Ernesto Solís Moya5, Héctor Eduardo Villaseñor Mir5, (6)IGA Technology Services, Udine, Italy Víctor Zamora Villa9, Ivan Ortiz-Monasterio1, Thomas Payne1, Roberto J 10 11 1 12 13 Pena , Matthew Reynolds , Pawan Singh , Andrzej Kilian , Peter Wenzl and Kevin Pixley7, (1)CIMMYT, Texcoco, Mexico, (2)CIMMYT, El Batan, P0592: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Mexico, (3)Universidad Politécnica de Francisco I Madero, Mexico, Mexico, and related - Even (4)Universidad Autónoma del, México, Mexico, (5)INIFAP, Mexico, Mexico, Utilizing Historical Wheat Genotypes and Phenotypes for Modern Plant (6)INIFAP, México, Mexico, (7)CIMMYT, Texcoco, Mexico, (8)Laboratorio Breeding in Triticum aestivum Nacional de Genómica para la Biodiversidad, Mexico, Mexico, (9)Universidad Autónoma Agraria Antonio Narro, Mexico, Mexico, (10)CIMMYT, Mexico 1 2 1 Trevor W Rife , Robert Graybosch and Jesse Poland , (1)Kansas State DF, Mexico, (11)CIMMYT, Obregon, Mexico, (12)Diversity Arrays University, Manhattan, KS, (2)University of Nebraska-Lincoln, Lincoln, NE Technology (DArT), Canberra, Australia, (13)CIMMYT - International Maize and Wheat Improvement Centre, El Batan, Mexico P0593: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd P0595: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Accuracy and Training Population Design for Genomic Selection on and related - Odd Quantitative Traits in Canadian Durum Wheat Breeding Lines Optimization of Training Population Under Population Structure in Genomic Selection Jemanesh K Haile1, Amidou N'Diaye1, Fran R Clarke2, John M Clarke1 and 1 Curtis J Pozniak , (1)University of Saskatchewan, Saskatoon, SK, Canada, Julio Isidro Sánchez, Cornell University, Ithaca, NY (2)AAFC-SPARC, Swift Current, SK, Canada

251 P0596: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0599: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd The Wheat Landrace Core Collections: Potential Resource for the Realized Genomic Selection Prediction Accuracies for End-Use Quality in Breeders CIMMYT Spring Wheat Breeding Program

Prashant Vikram1, Juan Burgueño2, Jorge Franco3, Matthew Reynolds4, Sarah D Battenfield1, Jesse Poland1, Ravi P Singh2, Carlos Guzmán3, Roberto Carolina Saint Pierre1, Carlos Guzmán1, Pawan Singh1, Thomas Payne1 and J Pena4 and Allan K Fritz1, (1)Kansas State University, Manhattan, KS, Sukhwinder Singh1, (1)CIMMYT, Texcoco, Mexico, (2)CIMMYT, Texcoco, (2)CIMMYT, Mexico City, Mexico, (3)CIMMYT, Texcoco, Mexico, Mexico, (3)Facultad de Agronomia, Paysandu, Uruguay, (4)CIMMYT, (4)CIMMYT, Mexico DF, Mexico Obregon, Mexico P0600: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0597: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd The Development of a Customised Single Nucleotide Polymorphism (SNPs) A New BAC Ends Sequencing Approach to Improve Wheat 1B Panel for Molecular Marker Assisted Selection within an Applied Chromosome Assembly Breeding Program

Karine Labadie1, Laura Brinas2, Caroline Belser3, Adriana Alberti1, Céline Jennifer L Zantinge, Shiming Xue, Michael Holtz, Patricia Juskiw, Joseph Durand1, Laurie Bertrand3, Arnaud Couloux1, Jean-Marc Aury1, Valerie Nyachiro, Mazen Aljarrah, James H Helm, Yadeta Kabeta, Kequan Xi, Lori Barbe1, Frederic Choulet4, Etienne Paux4 and Patrick Wincker1, (1)CEA - Oatway, Krishan Kumar and Flavio Capettini, Field Crop Development Centre- Genoscope, Evry, France, (2)CEA, EVRY, France, (3)CEA - Genoscope, Alberta Agriculture and Rural Development, Lacombe, AB, Canada EVRY, France, (4)INRA GDEC, Clermont-Ferrand, France P0601: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0598: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even Exploring the Genetics of Earliness in the CDC Teal " CDC Go Canadian Genomic Selection for Wheat (Triticum aestivum L) Trait and Trait Western Red Spring Wheat Mapping Population Stability Hua Chen, University of Alberta, Edmonton, AB, Canada Mao Huang, Ohio State University, Wooster, OH and Clay Sneller, Ohio State University, Wooster, OH

P0602: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0605: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd RNA-Seq Bulked Segregant Analysis Enables the Identification of High- Genome-Wide Association Mapping of Nitrogen Use Efficiency Traits in Resolution Genetic Markers for Breeding in Hexaploid Wheat Hard Winter Wheat

Ricardo H Ramirez-Gonzalez1, Mario Caccamo1, Cristobal Uauy2, Vanesa Mary Guttieri1, Katherine Frels1, Brian M Waters1, P Stephen Baenziger1, Segovia2, Nicholas Bird3, Paul Fenwick4, Sarah Holdgate5, Simon Berry4 and Eduard Akhunov2 and Schichen Wang2, (1)University of Nebraska-Lincoln, Peter Jack6, (1)The Genome Analysis Centre, Norwich, United Kingdom, Lincoln, NE, (2)Kansas State University, Manhattan, KS (2)John Innes Centre, Norwich, England, (3)John Innes Centre, Norwuch, United Kingdom, (4)Limagrain UK Ltd, Market Rasen, United Kingdom, (5)NIAB, Cambridge, United Kingdom, (6)RAGT Seeds, Saffron Walden, P0606: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, United Kingdom and related - Even Genome-Wide Association Study of Flowering Time in Hexaploid Winter Wheat P0603: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd Zifeng Guo1, Marion S Röder1, Martin W Ganal2 and Thorsten Schnurbusch3, Breeding for Nitrogen Use Efficiency in Hard Winter Wheat Using (1)IPK, Gatersleben, Germany, (2)TraitGenetics GmbH, Gatersleben, Canopy Spectral Reflectance and Genomic Selection Germany, (3)Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany Katherine Frels, Mary Guttieri and P Stephen Baenziger, University of Nebraska-Lincoln, Lincoln, NE P0607: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd P0604: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Homoeologous Pairing and Molecular Genotyping Reveal New and related - Even Evolutionary Evidence of Wheat B Genome

Mapping Yield and Yield-Component QTL in a Durum Wheat (Triticum 1 1 1 2 2 turgidum ssp durum) Multi-Parental Cross Population Wei Zhang , Mingyi Zhang , Xianwen Zhu , Shiaoman Chao , Steven S Xu and Xiwen Cai1, (1)North Dakota State University, Fargo, ND, (2)USDA-ARS, Sara G Milner1, Marco Maccaferri1, Bevan E Huang2, Elisabetta Frascaroli1, Fargo, ND 3 4 1 1 Paola Mantovani , Andrea Massi , Roberto Tuberosa and Silvio Salvi , (1)DipSA - University of Bologna, Bologna, Italy, (2)CSIRO, Food Futures Flagship and CMIS, Brisbane, Australia, (3)Società Produttori Sementi, Argelato, Italy, (4)Società Produttori Sementi Bologna, Argelato, Italy

252 P0608: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0612: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Even Phenotypic, Spectral Reflectance, and Genetic Analysis of Yield in Spring The Induction and Detection of Novel Allelic Variants of TaAP2 Wheat Accessions Homoeologs for the Engineering of Cleistogamy in Wheat

Brian Carter Bowman, University of Idaho, Aberdeen, ID Katsuyuki Kakeda1, Masahiro Tomokazu1, Masayuki Ishihara1, Fuminori 2 2 2 2 Kobayashi , Youko Oono , Yumiko Hanawa , Daiki Kawada , Hirokazu Handa2, Kazuhiko Sugimoto2 and Takao Komatsuda2, (1)Graduate School of P0609: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Bioresources, Mie University, Tsu, Japan, (2)National Institute of and related - Odd Agrobiological Sciences, Tsukuba, Japan Influence of the Genes at the Ha Loci on Hardness in Wheat Ravi Chandrabhan Nirmal, Queensland Alliance for Agriculture and Food P0613: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Innovation, The University of Queensland, Brisbane, Australia and related - Odd Evaluation of Cell Wall Biosynthetic Genes in Hollow- and Solid-Stemmed Genotypes of Wheat (Triticum aestivum) P0610: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Leticia Meza1, Marsha Jordan1, Ruth Osborne1, Jamie Sherman2, Luther Structure and Function of Ph1 (Pairing homoeologous 1) Gene of Wheat Talbert2, Dale Clark3, Nidhi Rawat4 and Christopher Botanga1, (1)Chicago State University, Chicago, IL, (2)Montana State University, Bozeman, MT, Ramanjot Kaur, Kanwardeep Singh, Ragupathi Nagarajan, Amita Mohan and (3)WestBred, Bozeman, MT, (4)Kansas State University, Manhattan, KS Kulvinder Gill, Washington State University, Pullman, WA

P0614: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0611: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Factors Influencing Variation in Wheat Grain Fructan Content Glume Transcriptome Profiling in Wild vs Domesticated Tetraploid Wheat Lynn D Veenstra1, Mark E Sorrells1 and Jean-Luc Jannink2, (1)Cornell 1 1 2 3 Hongda Zou , Raanan Tzarfati , Tamar Krugman , Sariel Hubner , Tzion University, Ithaca, NY, (2)USDA-ARS, Ithaca, NY Fahima2, Shahal Abbo4, Abraham B Korol1 and Yehoshua Saranga4,

(1)Institute of Evolution, University of Haifa, Haifa, Israel, (2)University of Haifa, Haifa, Israel, (3)University of British Columbia, Vancouver, BC, Canada, (4)R H Smith Institute of Plant Science & Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

P0615: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0618: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even Dissecting Genetic Networks Underlying Wheat Kernel Characteristics in High Density SNP Mapping to Identify Candidate Genes Underlying QTL an Elite " Non-Adapted Cross Using 90k SNP Iselect Assay for Pre-Harvest Sprouting in Wheat

Ajay Kumar1, Morgan Echeverry-solarte1, Senay Simsek1, Mohammed Mark Jordan1, Adrian Cabral2 and Curt A McCartney1, (1)Agriculture and Alamri2, Mohamed Mergoum1 and Eder Eduardo Mantovani1, (1)North Dakota Agri-Food Canada, Morden, MB, Canada, (2)National Reseacrh Council of State University, Fargo, ND, (2)King Saud University, Riyadh, Saudi Arabia Canada, Sakatoon, SK, Canada

P0616: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0619: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Pollen Development in Crops - Barley and Wheat Bioavailabilty of Wheat Neutrients Is an Emerging Challenge for Breeders Jose Fernandez Gomez, University Of Nottingham, Nottingham, United Irum Aziz and Richard Trethowan, The University of Sydney, Australia, Kingdom Sydney, Australia

P0617: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0620: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even Genome-Wide Association Analysis of Grain Pigment Colour in Elite High-Density SNP Mapping and Quantitative Trait Locus Analysis of Durum Wheat Breeding Lines, Using Single SNP- and Haplotype-Based Glaucousness and Leaf Colour in Common Wheat Approach in Durum Wheat Sachin Kumar1, Ron E Knox1, Fran R Clarke1, Richard D Cuthbert1, Curtis Amidou N'Diaye1, Jemanesh K Haile1, Fran R Clarke2, John M Clarke1, Ron E Pozniak2, Ron M DePauw1 and Yong He1, (1)AAFC-SPARC, Swift Current, Knox2 and Curtis J Pozniak1, (1)University of Saskatchewan, Saskatoon, SK, SK, Canada, (2)University of Saskatchewan, Saskatoon, SK, Canada Canada, (2)AAFC-SPARC, Swift Current, SK, Canada

253 P0621: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0623: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Odd Genetic Assessment of Yield and Yield Components in a Highly Structured Application of Higher Concentration of Zn Influences DNA Methylation in Jordanian Durum Wheat Landrace Germplasm Under Different Semi- Plant Genome Arid Climatic Conditions Maren A Johnson1, Matthew Bauduin1, Lindsey Shimpa1, Venu (Kal) Amer Karadsheh1, Nasri Haddad1, Murari Singh2, Salvatore Ceccarelli3, Maen Kalavacharla2 and Khwaja G Hossain1, (1)Mayville State University, Mayville, Hasan4, Abdul Qader Jighly5 and Ayed Al Abdallat2, (1)Univeristy of Jordan, ND, (2)Delaware State University, Dover, DE Amman, Jordan, (2)International Center for Agricultural Research in the Dry Areas, Amman, Jordan, (3)International Center for Agricultural Research in the Dry Areas, Beirut, Lebanon, (4)Al-Balqa Applied University, Al Salt, Jordan, P0624: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, (5)International Center for Agricultural Research in the Dry Areas, Cairo, and related - Even Egypt Towards Developing Co-Dominant Markers for Wsm1 and Cmc4 in Winter Wheat P0622: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Carol Powers, Liuling Yan and Brett F Carver, Oklahoma State University, and related - Even Stillwater, OK Precise Transfer of Useful Variability for High Grain Micronutrients from Wheat-Aegilops Substitution Lines into Bread Wheat through Pollen P0625: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Radiation Hybrid Approach and related - Odd Imran Sheikh1, Prachi Sharma2, Shailender Kumar Verma3, Satish Kumar4, Development of Kaspar SNP Markers for Host Plant Resistance to Biotic Sachin Malik5, Dharmerndra Singh1, Vishal Chugh1, Sundip Kumar5 and HS Stress in Wheat Dhaliwal6, (1)Eternal University, Sirmour, HP, India, (2)Eternal University, 1 1 2 2 1 Sirmour, Himachal Pradesh, India, (3)Central University of HImachal Pradesh, Chor Tee Tan , Shuyu Liu , Silvano Ocheya , Smit Dhakal , Jackie C Rudd , 1 3 4 5 Kangra, India, (4)Indian Institute of Technology, Roorkee, Roorkee, India, Qingwu Xue , Guorong Zhang , Guihua Bai , Xinzhong Zhang , Ravindra 1 1 (5)GBPUAT, Pantnagar-263145, Uttarakhand, Pant Nagar, India, (6)Eternal Devkota and Maria Fuentealba , (1)Texas A&M AgriLife Research, Amarillo, University, Baru-Sahib, India TX, (2)Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, (3)Kansas State University, Hays, KS, (4)USDA ARS, Manhattan,

KS, (5)Kansas State University, Manhattan, KS

P0626: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0629: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Even Investigating Mechanisms of Cold Tolerance in Cereals By Comparing Association Mapping for Agronomic Traits in an Elite Spring Wheat Panel Whole-Chromosome Shotgun Assemblies of Wheat Chromosome 5A and Under Drought and Irrigated Conditions the Long Arm of Rye Chromosome 5R Jayfred Gaham Godoy1, Luther Talbert2, Shiaoman Chao3 and Michael Dustin J Cram, National Research Council of Canada, Saskatoon, SK, Canada Pumphrey1, (1)Washington State University, Pullman, WA, (2)Montana State University, Bozeman, MT, (3)USDA-ARS, Fargo, ND P0627: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd P0630: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Identification of a New Microsatellite Marker Linked to Grain Filling Rate and related - Even as an Indicator for Heat Tolerance Genes in a DH Wheat Population Diversity of Root Traits in Great Plains Winter Wheat Under Drought Stress Mohamed N Barakat1, Khaled A Moustafa2, Adel A Elshafei2, Mohammed Alamri3 and Mohamed Motawei4, (1)King Saud University, Riyadh, Saudi Wahid Awad, Colorado State University, Fort Collins, CO Arabia, (2)Collage of Food and Agriculture- King Saud University, Riyadh, Saudi Arabia, (3)2Dept of Food Sciences and Nutrition, College of Food and Agricultural Sciences, King Saud University, Riyadh, Riyadh, Saudi Arabia, P0631: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, (4)3Plant Production& Protection Department, Faculty of Agriculture& and related - Odd Veterinary Medicine, Al-Qassim University, Saudi Arabia, Burida, Saudi A Systems Biology Route Towards Understanding Temperature-Sensitive Arabia Subgenome Interplay in Triticum aestivum Endosperm

1 1 2 3 Karl G Kugler , Matthias Pfeifer , Anne K Uhlen , Klaus FX Mayer and P0628: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Odd-Arne Olsen2, (1)Institute of Bioinformatics & Systems Biology, MIPS, and related - Even Neuherberg, Germany, (2)Norwegian University of Life Sciences, Aas, Understanding the Role of Cytoplasmic Genomes in Stress Tolerance of Norway, (3)Plant Genome and Systems Biology, Helmholtz Center Munich, Wheat Neuherberg, Germany

Marisa Elena Miller, University of Minnesota/USDA-ARS, St Paul, MN, Katie L Liberatore, USDA-ARS Cereal Disease Laboratory, St Paul, MN and Shahryar F Kianian, USDA ARS, Saint Paul, MN

254 P0632: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0635: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Identification of Quantitative Trait Loci for Four Physiological Traits in FHB Resistant Wheat through Transgressive Segregation an Advanced Backcross Population of Wheat Under Drought Stress Wentao Zhang1, Tammy Francis1, Peng Gao1, Kerry Boyle1, Lipu Wang1, Li Abdullah A AL-Doss1, Mohamed N Barakat1, Khaled A Moustafa1 and Forseille1, Fengying Jiang2, François Eudes2 and Pierre Fobert1, (1)National Abdelazem Salem2, (1)Collage of Food and Agriculture- King Saud University, Research Council Canada, Saskatoon, SK, Canada, (2)Agriculture and Agri- Riyadh, Saudi Arabia, (2)King Saud University, Riradh, Saudi Arabia Food Canada, Lethbridge, AB, Canada

P0633: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0636: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even Expression Analysis of an Introgressed Gene in Bread Wheat QTLs from Wild Emmer Wheat Improve Drought Resistance in Modern Wheat Cultivars Melda Kantar and Hikmet Budak, Sabanci University, Istanbul, Turkey Lianne Merchuk, Faculty of Agriculture Food & Environment, the Hebrew University of Jerusalem, Rehovot, Israel, Yehoshua Saranga, R H Smith P0634: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Institute of Plant Science & Genetics in Agriculture, The Hebrew University of and related - Even Jerusalem, Rehovot, Israel, Tamar Krugman, University of Haifa, Haifa, Israel, Identification of High Throughput SNP Markers Linked to QTL for Tzion Fahima, Institute of Evolution, University of Haifa, Haifa, Israel, Gabriel Drought Tolerance and Wsm2 Gene in US Hard Red Winter Wheat and Lidzbarsky, Institute of Evolution, University of Haifa, israel, Israel and Vered Applications in Breeding Barak, The Robert H Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, rehovot, Israel Silvano Ocheya1, Shuyu Liu2, Jackie C Rudd2, Amir Ibrahim1, Guorong 3 2 1 2 4 Zhang , Qingwu Xue , Dirk Hays , Ravindra Devkota , Shiaoman Chao , Guihua Bai5, Scott Haley6, Jianli Chen7, Chor Tee Tan2, Maria Fuentealba2, Shannon Baker2 and Jason Baker2, (1)Texas A&M University, College Station, TX, (2)Texas A&M AgriLife Research, Amarillo, TX, (3)Kansas State University, Hays, KS, (4)USDA-ARS, Fargo, ND, (5)USDA ARS, Manhattan, KS, (6)Colorado State University, Fort Collins, CO, (7)University of Idaho, Aberdeen, ID

P0637: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0640: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even A Genome-Wide Association Study of Resistance to Stripe Rust (Puccinia Mapping Quantitative Trait Loci for Slow-Rusting Traits in Wheat striiformis f sp tritici) in a Worldwide Collection of Hexaploid Spring Wheat (Triticum aestivum L) Yue Lu, Kansas State University Agronomy Department, Manhattan, KS

Marco Maccaferri1, Junli Zhang2, Peter Bulli3, Zewdie A Abate4, Shiaoman Chao5, Dario Cantu2, Eligio Bossolini6, Xianming Chen7, Michael Pumphrey3 P0641: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and Jorge Dubcovsky2, (1)DipSA - University of Bologna, Bologna, Italy, and related - Odd (2)University of California Davis, Davis, CA, (3)Washington State University, Fine Mapping of the Genomic Region Carrying Linked Rust Resistance Pullman, WA, (4)MONSANTO, Yuma, AZ, (5)USDA-ARS, Fargo, ND, Genes Lr52 and Yr47 in Common Wheat (6)Bayer CropScience, Gent, Belgium, (7)USDA-ARS, Pullman, WA Naeela Qureshi1, Kerrie Forrest2, Thomas Wicker3, Matthew J Hayden2, Justin 4 3 1 1 D Faris , Beat Keller , Harbans Bariana and Urmil Bansal , (1)University of P0638: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Sydney, Cobbitty, Australia, (2)Department of Environment and Primary and related - Even Industries, Bundoora, Australia, (3)University of Zurich, Zurich, Switzerland, Identification of Candidate Genes in QTL 2DL and Deciphering (4)USDA-ARS, Fargo, ND Mechanisms of Resistance Against Fusarium Head Blight Based on Metabolo-Genomics in Wheat P0642: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Udaykumar Kage, McGill University, SAINTE ANEE DE BELLEVUE, QC, and related - Even Canada and Ajjamada Chengappa Kushalappa, McGill University, Saint-anne- Identification and Mapping of Sources of Resistance to Stem Rust in de-bellevue, QC, Canada Spark/Rialto DH Wheat Population

1 2 3 Banchgize Getie Temesgen , Davinder Singh , Urmil Bansal , James P0639: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Simmonds4, Cristobal Uauy5 and Robert Park2, (1)The University of Sydney, and related - Odd Sydney, Australia, (2)The University of Sydney, Camden, NSW, Australia, From Prediction to Discovery of New Stripe Rust Resistance Genes in (3)University of Sydney, Cobbitty, Australia, (4)Jones Innes Center, Norwich, Landraces from Watkins Collection-Triticum aestivum L United Kingdom, (5)John Innes Centre, Norwich, England

Urmil Bansal1, Debbie Wong2, Kerrie Forrest2, Bosco Chemayek1, Mumta Chhetri1, Mesfin Gessese1, Vallence Nsabiyera1, Mandeep Randhawa1, Hans D Daetwyler2, Ben Hayes2, Matthew J Hayden2 and Harbans Bariana1, (1)University of Sydney, Cobbitty, Australia, (2)Department of Environment and Primary Industries, Bundoora, Australia

255 P0643: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0646: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even A 2DS Chromosome Carries a Complex of Leaf Rust Resistance Alleles in Pyramiding Stem Rust Resistance Genes into South African Wheat Wheat Cultivars

Toi John Tsilo, Tarekegn Terefe, Tsepiso Hlongoane and Joyce Mebalo, Tsepiso Hlongoane1, Timmy A Baloyi1, Adré Minnaar-Ontong2, Toi John Agricultural Research Council - Small Grain Institute, Bethlehem, South Africa Tsilo1 and Tebogo Oliphant1, (1)Agricultural Research Council - Small Grain Institute, Bethlehem, South Africa, (2)University of the Free State, Bloemfontein, South Africa P0644: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Dissection of Wheat Stem Rust Resistance in the Montenegrin Landrace P0647: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, PI362698 and related - Odd

1 2 3 4 Genetic Gain from Phenotypic and Genomic Selection for Quantitative Jason D Zurn , Matthew Rouse , Shiaoman Chao , Godwin Macharia , J Resistance to Stem Rust of Wheat Michael Bonman5 and Maricelis Acevedo1, (1)North Dakota State University, Fargo, ND, (2)USDA-ARS Cereal disease laboratory, St Paul, MN, (3)USDA- Jessica Rutkoski, Cornell University, International programs of the college of ARS, Fargo, ND, (4)Kenya Agricultural & Livestock Research Organization, agriculture and life sciences and The plant breeding and genetics section of the Njoro, Kenya, (5)USDA-ARS, Aberdeen, ID school of integrated plant sciences, Ithaca, NY, Ravi P Singh, CIMMYT, Mexico City, Mexico, Julio Huerta-Espino, INIFAP, Chapingo, Mexico, Sridhar Bhavani, CIMMYT, Nairobi, Kenya, Jesse Poland, Kansas State P0645: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, University, Manhattan, KS, Jean-Luc Jannink, USDA-ARS, Ithaca, NY and and related - Odd Mark E Sorrells, Cornell University, Ithaca, NY Mapping Resistance to the Ug99 Race Group of the Stem Rust Pathogen in a Spring Wheat Landrace P0648: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Ebrahiem Babiker, USDA-ARS, Aberdeen, ID and related - Even The Powdery Mildew Resistance Gene Pm8 Derived from Rye Is Suppressed By Its Wheat Ortholog Pm3 Severine Hurni1, Susanne Brunner1, Daniel Stirnweis1, Gerhard Herren1, David Peditto1, Robert A McIntosh2 and Beat Keller1, (1)University of Zurich, Zurich, Switzerland, (2)University of Sydney, Narellan, Australia

P0649: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0652: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even Characterization of Historic South African Wheat Cultivars for Seedling Modelling Effector-Receptor Interactions and Susceptibility to Septoria Resistance to Cereal Rusts nodorum Blotch in Wheat

Pamella Ntshakaza1, Timmy A Baloyi2, Bomikazi N Gqola3, Tarekegn Terefe2, Huyen TT Phan1, Kasia Clarke1, Eiko Furuki1, Richard P Oliver1, Diane Hussein Shimelis4 and Toi John Tsilo2, (1)Agricultural Research Council, Mather2 and Kar-Chun Tan1, (1)Curtin University, Perth, Australia, Bethlehem, South Africa, (2)Agricultural Research Council - Small Grain (2)Australian Centre for Plant Functional Genomics, Adelaide, Australia Institute, Bethlehem, South Africa, (3)Agricultural Research council, Bethlehem, South Africa, (4)University of Kwa-Zulu Natal, Pietermaritzburg, South Africa P0653: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd

The Triticeae Toolbox (T3): Managing Big Data, Experiment Design, and P0650: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Phenotyping Tools and related - Even 1 2 3 Characterization of Virulence Factors in Spot Form Net Blotch Clay Birkett , Jean-Luc Jannink , Victoria Carollo Blake and David Matthews1, (1)USDA-ARS, Ithaca, NY, (2)Cornell University, Ithaca, NY, Nathan A Wyatt, Dept Veterinary and Microbiological Sciences, North (3)USDA ARS WRRC, Albany, CA Dakota State University, Fargo, ND, Steven A Carlsen, Department of Plant Pathology, North Dakota State Univ, Fargo, ND, Robert S Brueggeman, Department of Plant Pathology, North Dakota State University, Fargo, ND and P0654: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Timothy L Friesen, USDA-ARS, Fargo, ND and related - Even Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B P0651: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Thomas Letellier1, Loic Couderc1, Frederic Choulet2, Manuel Spannagl3, Cyril and related - Odd Pommier1, Josep Lluis Gelpi Buchaca4, Paul J Kersey5, Hadi Quesneville1, 1 1 Genome-Wide Association Mapping of Susceptibility to Stagonospora Delphine Steinbach and Michael Alaux , (1)INRA - URGI, Versailles, France, nodorum Blotch in Emmer Wheat (2)INRA GDEC, Clermont-Ferrand, France, (3)Institute of Bioinformatics & Systems Biology, MIPS, Neuherberg, Germany, (4)Universitat de Barcelona, Qun Sun1, Shiaoman Chao2, Timothy L Friesen2, Justin D Faris2 and Steven S Barcelona, Spain, (5)EMBL - The European Bioinformatics Institute, Xu2, (1)North Dakota State University, Fargo, ND, (2)USDA-ARS, Fargo, ND Cambridge, United Kingdom

256 P0655: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0658: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even Building a Bridge from the Barley National Germplasm Collection to Defining the Gene-Rich Portion of the Barley Genome Breeding Programs Maria Muñoz-Amatriain1, Stefano Lonardi1, Steve Wanamaker1, Ming- Alexandrea Ollhoff, University of Minnesota- Twin Cities, Saint Paul, MN Cheng Luo2, Jan Barto#3, Jaroslav Dolezel3, Hamid Mirebrahim1, Rachid 1 4 5 6 7 Ounit , Nils Stein , Roger Wise , Andris Kleinhofs , Gary J Muehlbauer and Timothy J Close1, (1)University of California, Riverside, CA, (2)University of P0656: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, California, Davis, CA, (3)Institute of Experimental Botany, Olomouc, Czech and related - Even Republic, (4)Institute of Plant Genetics and Crop Plant Research (IPK), The Triticeae Toolbox (T3): From the Ground Up Gatersleben, Germany, (5)USDA-ARS, Iowa State University, Ames, IA, (6)Washington State University, Pullman, WA, (7)Department of Plant 1 2 3 Victoria Carollo Blake , David E Matthews , Clay Birkett and Jean-Luc Biology, University of Minnesota, St Paul, MN Jannink3, (1)USDA ARS WRRC, Albany, CA, (2)USDA ARS, Ithaca, NY,

(3)USDA-ARS, Ithaca, NY P0659: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat,

and related - Odd P0657: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Genomic Prediction in Barley and related - Odd A Barley Root Mutant Collection for Fast Forward Genetics Vahid Edriss1, Fabio Cericola1, Jens D Jensen2, Jihad Orabi2, Ahmed Jahoor2 and Just Jensen3, (1)Aarhus University, Tjele, Denmark, (2)Nordic Seed, 1 1 2 1 Riccardo Bovina , Sara G Milner , Carlos Busanello , Valentina Talame , Nils Holeby, Denmark, (3)Molecular Biology and Genetics, Aarhus University, 3 1 1 Stein , Roberto Tuberosa and Silvio Salvi , (1)DipSA - University of Bologna, Tjele, Denmark Bologna, Italy, (2)Department of Plant Science, University Federal of Pelotas,

Capão do Leão-RS, Brazil, (3)Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany P0660: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even

The Role of microRNA172 in Regulating the Barley Cleistogamy 1 Gene Nadia Anwar1, Takayuki Yazawa1, Akemi Tagiri1, Mari Sakuma1, Thomas Nussbaumer2, Mohammad Pourkheirandish1 and Takao Komatsuda1, (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)MIPS/IBIS, Helmholtz Center Munich, Munich, Germany

P0661: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0664: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even Association Mapping of Quantitative Trait Loci for Tillering Traits in Nitrogen Use Efficiency (NUE) and Malt Quality GWAS in Elite Barley Facultative/Winter 6-Rowed Barley (Hordeum vulgare)

Allison M Haaning, Kevin P Smith and Gary J Muehlbauer, University of Araby Belcher, Alfonso Cuesta-Marcos, Ryan Graebner and Patrick M Hayes, Minnesota, Saint Paul, MN Oregon State University, Corvallis, OR

P0662: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0665: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Characterizing Barley Malting Quality QTL Using a Ds Transposon-Based Allele Frequency Changes over Five Cycles of Genomic Selection in a Functional Genomics and Synteny-Based Comparative Approach Barley Breeding Population Surinder Singh, McGill University, Ste Anne De Bellevue, QC, Canada and Tyler Tiede1, Ahmad Sallam1, Karen Beaubian1, Shiaoman Chao2, Aaron Jaswinder Singh, McGill University, Ste Anne de Bellevue, QC, Canada Lorenz3 and Kevin P Smith4, (1)University of Minnesota, St Paul, MN, (2)USDA-ARS, Fargo, ND, (3)University of Nebraska–Lincoln, Lincoln, NE, (4)Department of Agronomy and Plant Genetics, University of Minnesota, St P0663: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Paul, MN and related - Odd

Molecular Characterization of the Cytoplasmic Male Sterility System Underlying the Breeding and Production of HyvidoTM Hybrids in Barley P0666: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even 1 2 2 3 Carine Rizzolatti , Nathalie Rodde , Hélène Bergès , Edouard Tatara , Pierre Droplet Digital PCR for Estimation of Allele Frequencies in Barley: Pin1, Françoise Budar4, Hakim Mireau4, Paul Bury5 and Jan Gielen1, Evaluation Using F1 Hybrid DNA (1)Syngenta, Saint-Sauveur, France, (2)INRA - CNRGV, Castanet Tolosan, France, (3)Syngenta, Orgerus, France, (4)INRA, Versailles, France, Sung-Jong Lee and Daniel Perry, Canadian Grain Commission, Winnipeg, (5)Syngenta, Market Stainton, England MB, Canada

257 P0667: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0670: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Odd and related - Even Use of the Wheat ph1 Mutant to Introgress Hordeum chilense Genotypic and Phenotypic Analyses of Wild and Intermedium Barleys Chromosome Fragments to Enhance Antioxidant Content in Bread Wheat Highlights Two Distinct Row-Types in Hordeum spontaneum

Pilar Prieto1, M Dolores R Rey2, MC Calderón1, MJ Rodrigo3, L Zacarías3 and Helmy M Youssef, IPK-Gatersleben, Germany, Gatersleben, Germany, Martin E Alós1, (1)Institute for Sustainable Agriculture, Cordoba, Spain, (2)Institute Mascher, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), for Sustainable Agriculture (IAS-CSIC), Córdoba, single, Spain, (3)Institute of Gatersleben, Germany, Mohammam Ayoub, UMC Utrecht, Utrecht, Agrochemistry and Food Technology, Cordoba, Spain Netherlands, Nils Stein, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Stadt Seeland, Germany and Thorsten Schnurbusch, IPK- gatersleben, Gatersleben, Germany P0668: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Identification of Manganese Use Efficiency Candidate Genes in Winter P0671: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Barley (Hordeum vulgare): GWAS on Chlorophyll a Fluorescence and and related - Odd ICP-OES Cloning of cer-zv, a Novel Gene Responsible for Cutin Formation in the Barley Leaf Cuticle Florian Leplat, Pai Pedas, Søren Husted and Søren Kjærsgaard Rasmussen, University of Copenhagen, Frederiksberg C, Denmark Chao Li1, Guoxiong Chen2, Kohei Mishina1, Mohammad Pourkheirandish1, 1 1 2 3 Cheng Liu , Nadia Anwar , Pengshan Zhao , Udda Lundqvist , Christiane Nawrath4, Takashi R Endo5 and Takao Komatsuda1, (1)National Institute of P0669: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Agrobiological Sciences, Tsukuba, Japan, (2)Key Laboratory of Stress and related - Odd Physiology and Ecology in Cold and Arid Regions, Gansu Province, Cold and Barley Domestication History: A Puzzle with Many Pieces Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, Lanzhou, China, (3)Nordic Genetic Resource Center, 1 1 2 3 Ana M Poets , Zhou Fang , Michael T Clegg and Peter L Morrell , Alnarp, Sweden, (4)Department of Plant Molecular Biology, University of (1)University of Minnesota, Saint Paul, MN, (2)University of California, Lausanne, Lausanne, Switzerland, (5)Centre of Plant Structural and Functional Irvine, CA, (3)Department of Agronomy and Plant Genetics, University of Genomics, Institute of Experimental Botany, Holice, Czech Republic Minnesota, Saint Paul, MN

P0672: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0675: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Exploring Wild Barley Germplasm in an Advanced Backcross-Nested Characterization of the Barley nec3 Gene; A Negative Regulator of Association Mapping (AB-NAM) Population Pathogen Elicited Programmed Cell Death

Liana Nice1, Kevin P Smith2, Brian J Steffenson1, Gina Brown-Guedira3, Lauren P Sager Bittara1, Xue Wang1, Jonathan Richards2, Timothy L Richard Horsley4, Tom Blake5 and Gary J Muehlbauer6, (1)University of Friesen3 and Robert S Brueggeman2, (1)Department of Plant Pathology, North Minnesota, St Paul, MN, (2)Department of Agronomy and Plant Genetics, Dakota State Univ, Fargo, ND, (2)Department of Plant Pathology, North University of Minnesota, St Paul, MN, (3)USDA/ARS PSRU, Raleigh, NC, Dakota State University, Fargo, ND, (3)USDA-ARS, Fargo, ND (4)North Dakota State University, Fargo, ND, (5)Montana State University, Bozeman, MT, (6)Department of Plant Biology, University of Minnesota, St Paul, MN P0676: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even

Elucidating the Molecular Mechanisms of Intermediate Host Resistance in P0673: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Barley to Wheat Stripe Rust and related - Odd Genome-Wide Association Mapping of Low Temperature Tolerance Andrew M Dawson, The Sainsbury Laboratory, Norwich, United Kingdom (LTT) in Barley (Hordeum vulgare L) to Improve Crop Efficiency Under Climate Change P0677: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Dustin W Herb1, Patrick M Hayes1, Alfonso Cuesta-Marcos2 and Scott Fisk1, and related - Odd (1)Oregon State University, Corvallis, OR, (2)Oregon State University, Genetics and Sources of Stem Rust Resistance in Barley Corvalis, OR Austin J Case1, Brian J Steffenson1 and Sridhar Bhavani2, (1)University of

Minnesota, St Paul, MN, (2)CIMMYT, Nairobi, Kenya P0674: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even Structural Variation at Fr-H2 Locus Is Associated to Frost Tolerance Trait in Barley Nicola Pecchioni1, Justyna Milc2, Marianna Pasquariello2, Caterina Morcia3, Valeria Terzi3 and Enrico Francia2, (1)CRA-CER Cereal Research Centre, Foggia, Italy, (2)University of Modena and Reggio Emilia, Reggio Emilia, Italy, (3)CRA-GPG Genomic Research Centre, Fiorenzuola d'Arda (PC), Italy

258 P0678: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0681: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Three-Gene Combinations Involving Rph20 Provide Stable Resistance to Characterization of CesA6 in Oat Leaf Rust in Barley Cassandra Anne Dohse, Melissa C Fogarty and Eric N Jellen, Brigham Young Laura Ashlee Ziems1, Jerome Franckowiak2, Gregory J Platz3, Emma Mace4, University, Provo, UT 5 5 6 7 Robert Park , Davinder Singh , David R Jordan and Lee Hickey , (1)QAAFI - The University of Queensland, Brisbane, Australia, (2)Department of Agriculture, Fisheries and Forestry,, Warwick, Australia, (3)Department of P0682: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Agriculture, Fisheries and Forestry, Warwick, Australia, (4)Queensland and related - Even Government, Warwick, Australia, (5)The University of Sydney, Camden, Oat Global: Uniting the Oat World at OatGlobalorg NSW, Australia, (6)University of Queensland, Warwick, Australia, (7)QAAFI, The University of Queensland, Brisbane, Australia Gabriele Gusmini, PepsiCo, St Paul, MN, Catherine Howarth, IBERS, Aberystwyth University, Aberystwyth, United Kingdom, Nicholas A Tinker,

Agriculture and Agri-Food Canada, Ottawa, ON, Canada, Jack K Okamuro, P0679: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, USDA ARS, Beltsville, MD, Ben Boroughs, NAMA, TBA, DC, Luiz and related - Odd Federizzi, UFRGS, TBA, Brazil, A Bruce Roskens, Grain Millers, Inc, Fine Mapping and Genome Characterization of the Net Form Net Blotch Naperville, IL, Pamela Zwer, SARDI, TBA, Australia and Jim Dyck, Oat Susceptibility Locus on Barley Advantage, TBA, SK, Canada

Jonathan Richards1, Zhaohui Liu2, Timothy L Friesen3 and Robert S Brueggeman1, (1)Department of Plant Pathology, North Dakota State P0683: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, University, Fargo, ND, (2)North Dakota State University, Fargo, ND, and related - Odd (3)USDA-ARS, Fargo, ND Comparative Mapping to Develop Markers in the Aegilops sharonensis Gametocidal Introgression P0680: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, Surbhi Mehra1, Emilie Knight2, Graham Moore2, Julie King3 and Ian P King4, and related - Even (1)The University of Nottingham, Loughborough, United Kingdom, (2)John Fine Mapping of a Gene for Resistance to a New Pathotype of Bipolaris Innes Centre, Norwich, United Kingdom, (3)The University of Nottingham, sorokiniana in Barley Leicestershire, United Kingdom, (4)University of Nottingham, Leicestershire, United Kingdom Rui Wang, Robert S Brueggeman, Yueqiang Leng and Shaobin Zhong, Department of Plant Pathology, North Dakota State University, Fargo, ND

P0684: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0687: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, and related - Even and related - Odd Mining New Diversity for Wheat Through the Introgression of Related Arabidopsis Lost Its Sister: Why Brachypodium Is a Better Model to Study Wild and Cultivated Grass Species PIN-Mediated Auxin Transport in the Shoot

Csilla Nemeth1, Ian P King1 and Julie King2, (1)University of Nottingham, Devin O'Connor, Sainsbury Laboratory, Cambridge University, Cambridge, Leicestershire, United Kingdom, (2)The University of Nottingham, United Kingdom and Ottoline Leyser, Sainsbury Laboratory Cambridge Leicestershire, United Kingdom University, Cambridge, United Kingdom

P0685: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0688: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, and related - Odd Common Beans - Even Establishment of Growth Scale in Brachypodium distachyon LegumeIP - An Integrative Platform to Study Gene Function and Genome Evolution in Legumes: Year 3 Update Yoshihiko Onda, Kei Hashimoto, Takuhiro Yoshida, Tetsuya Sakurai, Yuji Sawada, Masami Yokota Hirai, Kiminori Toyooka, Keiichi Mochida and Jun Li, Xinbin Dai and Patrick Xuechun Zhao, The Samuel Roberts Noble Kazuo Shinozaki, RIKEN CSRS, Yokohama, Japan Foundation, Ardmore, OK

P0686: Genome Mapping, Tagging & Characterization: Wheat, Barley, Oat, P0689: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, and related - Even Common Beans - Odd High-Throughput Phenotyping of Brachypodium distachyon Under Structure in the USDA Soybean Germplasm Collection Progressive Drought and Heat Stress Katy Martin Rainey, William Muir and Alencar Xavier, Purdue University, Malia Gehan, Noah Fahlgren, Tracy Hummel, Stephanie Turnipseed and Todd West Lafayette, IN Mockler, Donald Danforth Plant Science Center, St Louis, MO

259 P0690: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0693: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Common Beans - Odd Mining Plant Collections Using Phenotyping and High-Throughput Tools for Phylogenomic Exploration within and Among Clade-Oriented Sequencing for Accelerated Crop Improvement - A Case Study of the Databases Native American Bean Apios americana Alan Cleary, NCGR, Santa Fe, NM, Longhui Ren, Iowa State University, Vikas Belamkar1, Nathan T Weeks2, Andrew D Farmer3, Scott R Kalberer2, Ames, IA, Steven B Cannon, USDA-ARS-CICGRU, Ames, IA and Andrew D Jugpreet Singh4, Alex Wenger5, V Gautam Bhattacharya6, William J Farmer, National Center for Genome Resources, Santa Fe, NM 7 2 Blackmon and Steven B Cannon , (1)Iowa State University, Ames, IA, (2)USDA-ARS-CICGRU, Ames, IA, (3)National Center for Genome Resources, Santa Fe, NM, (4)ORISE Fellow, USDA-ARS-CICGRU, Ames, P0694: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, IA, (5)Independent Researcher, Lititz, PA, (6)Independent Researcher, Ithaca, Common Beans - Even NY, (7)Independent Researcher, Mechanicsville, VA Soybean Knowledge Base (SoyKB)

Shiyuan Chen, Jiaojiao Wang, Gary Stacey, Henry T Nguyen, Dong Xu and P0691: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Trupti Joshi, University of Missouri, Columbia, MO Common Beans - Odd

The cis-Golgi Gene, Syntaxin 31, induces the expression of LESION P0695: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, SIMULATING DISEASE1 (LSD1) which Functions in Glycine max Common Beans - Odd Defense to the Root Parasite Heterodera glycines What's New at SoyBase? Shankar R Pant1, Brant T McNeece1, Keshav Sharma1, Jiang Jian1, Prakash 1 1 1 2 Niraula1, Aparna Krishnavajhala2, Gary W Lawrence2 and Vincent P Klink1, David Grant , Rex T Nelson , Kevin H Feeley , Jacqueline D Farrell , 2 1 1 (1)Department of Biological Sciences, Starkville, MS, (2)Department of Sudhansu Dash , Nathan Weeks and Steven B Cannon , (1)USDA-ARS- Biochemistry, Molecular Biology, Entomology and Plant Pathology, Starkville, CICGRU, Ames, IA, (2)Iowa State University, Ames, IA MS

P0692: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even The Legume Non-Transgenic LORE1 Mutant Collection Anna Malolepszy, Dorian F Urbanski, Niels Sandal, Terry Mun, Jens Stougaard and Stig U Andersen, Aarhus University, Aarhus, Denmark

P0696: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0699: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Common Beans - Odd Large-Scale Next-Generation Resequencing of Soybean Germplasm for SoyMap2: Investigating Genetic Diversity in Wild Relatives of Soybean Trait Discovery Jacqueline D Farrell1, Wei Huang1, Sudhansu Dash2, Eun-Young Hwang3, Yang Liu1, Saad M Khan1, Juexin Wang2, Shiyuan Chen2, Mats Rynge3, Joao Namhee Jeong4, Brian Nadon5, Qijian Song6, Michelle A Graham7, Jane V Maldonado dos Santos1, Babu Valliyodan4, Nirav Merchant5, Henry T Grimwood8, Michael Gonzales5, Steven Cannon9, Jessica Schlueter10, Jianxin Nguyen2, Dong Xu2 and Trupti Joshi2, (1)University of Missouri-Columbia, Ma11, Jeremy Schmutz8, Jeffrey J Doyle12, Perry Cregan6 and Scott A Jackson5, Columbia, MO, (2)University of Missouri, Columbia, MO, (3)Information (1)Iowa State University, Ames, IA, (2)Virtual Reality Application Center, Science Institute- University of Southern California, Marina del Rey, CA, Ames, IA, (3)University of Maryland, College Park, MD, (4)Cornell (4)University of Missouri & National Center for Soybean Biotechnology, University, Ithaca, NY, (5)University of Georgia, Athens, GA, (6)USDA-ARS, Columbia, MO, (5)iPlant Collaborative/University of Arizona, Tucson, AZ Soybean Genomics and Improvement Lab, Beltsville, MD, (7)USDA-ARS- CICGRU, Ames, IA, (8)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (9)Iowa State University - USDA-ARS, Ames, IA, (10)University of North P0697: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Carolina at Charlotte, Charlotte, NC, (11)Purdue University, West Lafayette, Common Beans - Odd IN, (12)Plant Biology Department, Cornell University, Ithaca, NY The Legume Information System (LegumeInfoorg) 2015 Steven B Cannon1, Andrew D Farmer2, Pooja E Umale3, Hrishikesh P0700: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Lokhande4, Alan Cleary4, Nathan T Weeks1, Scott R Kalberer1, Ethalinda Common Beans - Even 5 6 5 7 Cannon , Sudhansu Dash , Deepak Bitragunta and Jugpreet Singh , (1)USDA- Exploring and Exploiting Seed Transcriptome Diversity in Soybean ARS-CICGRU, Ames, IA, (2)National Center for Genome Resources, Santa Fe, NM, (3)The National Center for Genome Resources, Santa Fe, NM, Yong-Qiang Charles An, USDA-ARS, Plant Genetics Research at Donald (4)NCGR, Santa Fe, NM, (5)Iowa State University, Ames, IA, (6)Virtual Danforth Plant Science Center, Saint Louis, MO, Wolfgang Goettel, USDA- Reality Application Center, Ames, IA, (7)ORISE Fellow, USDA-ARS- ARS Plant Genetics Research at Danforth Plant Science Center, Saint Louis, CICGRU, Ames, IA MO, Earl Taliercio, USDA-ARS, Soybean and Nitrogen Fixation Research, Raleigh, NC, Mingli Wang, USDA-ARS, PGRCU, Griffin, GA and Zongrang Liu, USDA-ARS, AFRS, Kearneysville, WV P0698: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Scanning and Filling: Ultra-Dense SNP Genotyping in Soybean Combining P0701: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, GBS and Resequencing Data Common Beans - Odd Screening Fast-Neutron Soybean Lines for Seed Composition Traits Davoud Torkamaneh, University Laval, Canada, Quebec city, QC, Canada and François Belzile, Laval University, Québec, QC, Canada Austin A Dobbels, University of Minnesota, St Paul, MN

260 P0702: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0705: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Common Beans - Odd A Fine-Scale Map of Recombination and Hotspots By Re-Sequencing Dt2 Is a Gain-of-Function MADS-Domain Factor Gene That Specifies Recombinant Inbred Lines Approach in Soybean Semideterminacy in Soybean

Dan Qiu1, Babu Valliyodan1, Tri D Vuong1, Yanjun Li2, Peng Zeng2, Jieqing Ping1, Yunfeng Liu1, Lianjun Sun1, Meixia Zhao1, Zhixi Tian2, Hanh Xiangyang Xu1, Chengxuan Chen2, Silvas J Prince1, Lu Dai2, Jiaying Huang2, Nguyen3, Yinghui Li4, Lijuan Qiu4, Randy Nelson5, Thomas E Clemente3, Liang Zeng2, Ye Tao2, Grover Shannon3, Xin Liu2 and Henry T Nguyen1, James E Specht3 and Jianxin Ma1, (1)Purdue University, West Lafayette, IN, (1)University of Missouri & National Center for Soybean Biotechnology, (2)Institute of Genetics and Developmental Biology, Chinese Academy of Columbia, MO, (2)Beijing Genomics Institute-Shenzhen, Shenzhen, China, Sciences, Beijing, China, (3)University of Nebraska, Lincoln, NE, (4)Chinese (3)University of Missouri, Portageville, MO Acdemy of Agricultural Sciences, Beijing, China, (5)USDA ARS, Urbana, IL

P0703: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0706: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even The Search for Functional Structural Variants and Adaptive Traits in Construction and Evaluation of an EMS-Induced Mutant Library of Soybean Japanese Soybean Cultivar Enrei Justin E Anderson, University of Minnesota, St Paul, MN Mai Tsuda1, Akito Kaga1, Toyoaki Anai2, Satoshi Watanabe1, Minoru 1 3 1 1 Nishimura , Naohiro Yamada , Takashi Sayama , Kyoko Takagi , Takehiko Shimizu1, Kayo Machita1, Satomi Mori1, Harumi Sasaki1, Hiroyuki Kanamori1, P0704: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Yuichi Katayose1 and Masao Ishimoto1, (1)NIAS, Ibaraki, Japan, (2)Saga Common Beans - Even University, Saga, Japan, (3)Nagano Vegetable and Ornamental Crops Analysis of Recent Expansions of Select Retrotransposon Families in Experimental Station, Nagano, Japan Soybean Howard M Laten, Athena D Mascarenhas, Piotr W Weglarz and Mark V P0707: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Albert, Loyola University Chicago, Chicago, IL Common Beans - Odd Genotype and Tissue-Specific Differences of DNA Methylation in Soybean Kyung Do Kim1, Brian Abernathy1, Xin Zhou2, Marc Libault3, Jane Grimwood4, Blake C Meyers5 and Scott A Jackson1, (1)University of Georgia, Athens, GA, (2)Washington University in St Louis, St Louis, MO, (3)University of Oklahoma, Norman, OK, (4)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (5)University of Delaware, Newark, DE

P0708: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0711: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Common Beans - Odd A Genome-Wide Association Analysis for Seed Oil and Protein on 13,000 Quantitative Trait Loci Underlying Seed Sucrose, Raffinose and Stachyose Soybean Accessions Contents in the MD 96-5722 By Spencer Recombinant Inbred Line Population of Soybean Nonoy Bandillo1, Diego Jarquin1, James E Specht2, Qijian Song3, Perry Cregan3 and Aaron Lorenz4, (1)University of Nebraska-Lincoln, Lincoln, NE, Abdelmajid Kassem1, Masum Akond2, Stella Kantartzi3, Khalid Meksem4, (2)University of Nebraska, Lincoln, NE, (3)USDA-ARS, Soybean Genomics Nacer Bellaloui5 and David A Lightfoot3, (1)American University of Ras Al and Improvement Lab, Beltsville, MD, (4)University of Nebraska–Lincoln, Khaimah, Ras Al Khaimah, United Arab Emirates, (2)Fayetteville State Lincoln, NE University, Fayetteville, NC, (3)Southern Illinois University, Carbondale, IL, (4)Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL, (5)USDA-ARS, Stoneville, MS P0709: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Gene Expression Profiling for Seed Protein and Oil Synthesis during Early P0712: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Seed Development in Soybean (Glycine max [L] Merr) Common Beans - Even Detection of the Genetic Factors Affecting the Number of Seeds per Pod in Young Eun Jang, Moon Young Kim, Jayern Lee, Sangrea Shim and Suk-Ha Soybean Lee, Seoul National University, Seoul, South Korea 1 2 2 2 Kunihiko Komatsu , Takashi Sayama , Ryoichi Yano , Kenichiro Fujii , Aya Hirose1, Masakazu Takahashi3 and Masao Ishimoto2, (1)NARO Hokkaido P0710: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Agricultural Research Center, Sapporo, Japan, (2)National Institute of Common Beans - Even Agrobiological Sciences, Tsukuba, Japan, (3)NARO Kyushu Okinawa Four New Soybean Sources Carrying Novel SACPD-C Alleles Containing Agricultural Research Center, Kumamoto, Japan High Level of Seed Stearic Acid and Conferring Resistance to Soybean Cyst Nematode Naoufal Lakhssassi1, Shiming Liu1, Zhou Zhou1, Alaa Alaswad2 and Khalid Meksem1, (1)Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, IL, (2)University of Missouri Columbia, Columbia, MO

261 P0713: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0716: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even Identification of QTLs for Single Seed Weight and Their Relationships to Association Mapping of Total Leaf Carotenoids Based on Three Other Seed Yield Components in Soybean Measurement Approaches in Diverse [Glycine max (L) Merr] Soybean Genotypes Kenichiro Fujii1, Takashi Sayama1, Kyoko Takagi2, Kazumasa Kosuge3, Katsunori Okano3, Kunihiko Komatsu4, Naoya Yamaguchi5, Chika Suzuki6, Arun Prabhu Dhanapal1, Jeffery D Ray2, Shardendu K Singh3, Valerio Akito Kaga1 and Masao Ishimoto1, (1)National Institute of Agrobiological Hoyos-Villegas4, James R Smith2, C Andy King5, Larry C Purcell5 and Felix B Sciences, Tsukuba, Japan, (2)NARO Agricultural Research Center, Tsukuba, Fritschi1, (1)University of Missouri, Columbia, MO, (2)USDA-ARS, Japan, (3)Ibaraki Agricultural Institute, Kasama, Ibaraki, Japan, (4)NARO Stoneville, MS, (3)USDA-ARS Beltsville, Beltsville, MD, (4)Michigan State Hokkaido Agricultural Research Center, Sapporo, Japan, (5)HRO Tokachi University, East Lansing, MI, (5)University of Arkansas, Fayetteville, AR Agricultural Experiment Station, Kasai-gun, Hokkaido, Japan, (6)HRO Central Agricultural Experiment Station, Yubari-gun, Hokkaido, Japan P0717: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd P0714: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Genome-Wide Structural Profiling and Bulk Segregant Sequencing Common Beans - Even Resolve a NAP1 Mutation Underlying a Short Trichome Phenotype in Effect of Row Spacing on Seed Isoflavone Contents in Soybean [Glycine Soybean max (L) Merr] Benjamin W Campbell1, Suma Sreekanta1, Fengli Fu2, Thomas Y Kono3, Abdelmajid Kassem1, Masum Akond2, Khalid Meksem3, Stella Kantartzi4 and Gary J Muehlbauer4 and Robert M Stupar2, (1)Department of Agronomy & David A Lightfoot4, (1)American University of Ras Al Khaimah, Ras Al Plant Genetics, University of Minnesota, St Paul, MN, (2)Department of Khaimah, United Arab Emirates, (2)Fayetteville State University, Fayetteville, Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, NC, (3)Department of Plant Soil and Agricultural Systems, SIUC, Carbondale, (3)University of Minnesota, Department of Agronomy, St Paul, MN, IL, (4)Southern Illinois University, Carbondale, IL (4)Department of Plant Biology, University of Minnesota, St Paul, MN

P0715: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0718: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even The Effect of Structural Variation at the I Locus on Regulation of microRNA Regulation of Auxin-Cytokinin Balance during Soybean Chalcone Synthase Short Interfering RNAs in Soybean Nodule Development Young B Cho and Lila Vodkin, University of Illinois, Urbana, IL Senthil Subramanian, Narasimha R Nizampatnam, Spencer Schreier and Suresh Damodaran, South Dakota State University, Brookings, SD

P0719: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0722: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even Transcriptomics-Assisted Discovery of Hormone Regulation during A Genome-Wide Comparison of Structural Variation Following Nodule Development in Soybean Mutagenesis, Genetic Transformation and Tissue Culture Treatments in Soybean Sajag Adhikari, Suresh Damodaran and Senthil Subramanian, South Dakota State University, Brookings, SD Justin E Anderson1, Jean-Michel Michno1, Adrian O Stec2 and Robert M 3 Stupar , (1)University of Minnesota, St Paul, MN, (2)University of Minnesota, Saint Paul, MN, (3)Department of Agronomy and Plant Genetics, University of P0720: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Minnesota, St Paul, MN Common Beans - Even

Peptide Binding By Alloproteins and Mutants of a Receptor Like Kinase in Soybean P0723: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd 1 2 2 David A Lightfoot , Ayan Malakar and Ravi Rajwanshi , (1)Southern Illinois Spectral Images Analyses to Assay Soybean Response to Abiotic Stress University, Carbondale, IL, (2)SIUC, Carbondale, IL Jin-Won Kim, Tae-Young Lee, Gyoungju Nah and Do-Soon Kim, Seoul National University, Seoul, South Korea P0721: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Virus Induced Gene Silencing of Candidate Genes in the Iron-Efficiency P0724: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Response of Soybean Common Beans - Even

1 2 1 Genome-Wide Identification and Characterization of the Soybean Mate Adrienne N Moran Lauter , Steven A Whitham and Michelle A Graham , Family and Analysis of Their Expression in Response to Aluminum Stress (1)USDA-ARS-CICGRU, Ames, IA, (2)Iowa State University, Ames, IA Juge Liu, Yang Li, Junyi Gai and Yan Li, National Center for Soybean Improvement, Nanjing Agricultural University, Nanjing, China

262 P0725: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0728: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even Soybean Ethylene Biosynthesis and Signaling: An in silico Approach and Fine Mapping Rpp6, a Valuable Soybean (Glycine max L Merr) Rust the Importance in Drought Stress Resistance Gene for the Southeastern USA Maria Fatima Grossi de Sa, Embrapa Genetic Resources and Biotechnology, Zachary Raymond King, University of Georgia, Athens, GA Brasília, Brazil, Maria EL Sa, Agriculture and Livestock Enterprise of Minas Gerais State, Brasilia -DF, Brazil, Fabricio BM Arraes, UFRGS, Porto Alegre, Brazil and Magda A Beneventi, Embrapa Genetic Resources and P0729: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Biotechnology, Brasilia -DF, Brazil Common Beans - Odd Polymorphisms at a Multi-Genic Multi-Pathogen Resistance Locus in Soybean P0726: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even David A Lightfoot, Southern Illinois University, Carbondale, IL and Melody Hyper-Polymorphism Around Resistance Loci of Soybean Naghmeh Hemmati, SIUC, Carbondale, IL

David A Lightfoot1, Melody Naghmeh Hemmati2, Oleksandra Zatserklyana2 and Ali Srour2, (1)Southern Illinois University, Carbondale, IL, (2)SIUC, P0730: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Carbondale, IL Common Beans - Even Fine Mapping of Candidate Gene(s) That Controls the Resistance of Frogeye Leaf Spot Disease in Soybean P0727: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Anh Pham1, Donna K Harris2, James Buck3, Jonathan Serrano2, Hussein A 2 4 4 1 1 Quantitative Trait Loci Mapping of Soybean Response to Elevated Ozone Abdel-Haleem , Perry Cregan , Qijian Song , Roger Boerma and Zenglu Li , (1)Institute of Plant Breeding, Genetics, and Genomics, University of Georgia, Christopher M Montes1, Jeffrey A Skoneczka2, Randy Nelson2 and Elizabeth Athens, GA, (2)University of Georgia, Athens, GA, (3)University of Georgia, A Ainsworth2, (1)University of Illinois at Urbana-Champaign, Urbana, IL, Griffin, GA, (4)USDA-ARS, Soybean Genomics and Improvement Lab, (2)USDA ARS, Urbana, IL Beltsville, MD

P0731: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0734: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even Identifying New Sources of Resistance to Brown Stem Rot in Soybean Genetic, Genomic, and Gene Expression Analyses of Soybean Aphid Resistance Genes Chantal E McCabe1, Silvia Cianzio1 and Michelle A Graham2, (1)Iowa State University, Ames, IA, (2)USDA-ARS-CICGRU, Ames, IA Dechun Wang1, Jiazheng Yuan1, Zixiang Wen1, Rick Meyer2, Carmille Bales1, 1 3 Cuihua Gu and Yong-Qiang Charles An , (1)Michigan State University, East Lansing, MI, (2)USDA-ARS, Plant Genetics Research Unit at Donald Danforth P0732: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Plant Sciences Center, St Louis, MO, (3)USDA-ARS, Plant Genetics Research Common Beans - Even at Donald Danforth Plant Science Center, Saint Louis, MO Four New Soybean Sources Carrying Novel SACPD-C Alleles Containing High Level of Seed Stearic Acid and Conferring Resistance to Soybean Cyst Nematode P0735: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Naoufal Lakhssassi1, Shiming Liu1, Zhou Zhou1, Alaa Alaswad2 and Khalid 1 Integrating Quantitative Trait Loci (QTL) from Many Studies: Meksem , (1)Department of Plant Soil and Agricultural Systems, SIUC, Approaches from Soybean, Common Bean, and Peanut Carbondale, IL, (2)University of Missouri Columbia, Columbia, MO 1 2 2 3 Jugpreet Singh , Scott R Kalberer , Robert Baker , Ethalinda Cannon , Sudhansu Dash4, Andrew D Farmer5, Kevin H Feeley2, Rex Nelson6, David P0733: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Grant7 and Steven B Cannon2, (1)USDA-ARS, Ames, IA, (2)USDA-ARS- Common Beans - Odd CICGRU, Ames, IA, (3)Iowa State University, Ames, IA, (4)Virtual Reality SNP Identification By Next Generation Sequencing of the Soybean Application Center, Ames, IA, (5)National Center for Genome Resources, Targeted Genome Segment for High-Throughput Selection of Soybean Santa Fe, NM, (6)USDA-ARS CICGRU, Ames, IA, (7)USDA-ARS-CICGRU Cyst Nematode Resistance and Iowa State University, Ames, IA

1 1 2 3 Shiming Liu , Naoufal Lakhssassi , Johannes Dapprich , Bjorn Rotter and Khalid Meksem1, (1)Department of Plant Soil and Agricultural Systems, SIUC, P0736: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Carbondale, IL, (2)Generation Biotech, Lawrenceville, NJ, (3)GenXPro- Common Beans - Even GmbH, Frankfurt am Main, Germany Lineage-Specific Gene Family Expansions of Legume Signaling Peptides

Diana Trujillo, University of Minnesota, Saint Paul, MN, Kevin AT Silverstein, Supercomputing Institute, University of Minnesota, Minneapolis, MN, Joann Mudge, National Center for Genome Resources (NCGR), Santa Fe, NM and Nevin D Young, Department of Plant Pathology, University of Minnesota, St Paul, MN

263 P0737: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0740: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Molecular Marker Development and Germplasm Evaluation for Information Cultivated Peanut (Arachis hypogaea L)

Sudhansu Dash1, Ethalinda Cannon1, Scott R Kalberer2, Jugpreet Singh3, Ze Peng1, Maria Gallo2, Diane Rowland1, Barry Tillman1 and Jianping Wang3, Deepak Bitragunta1, Longhui Ren1, Wei Huang1, Nathan T Weeks2, Julie (1)University of Florida, Gainesville, FL, (2)University of Hawaii, Honolulu, Dickerson4, Andrew D Farmer5 and Steven B Cannon2, (1)Iowa State HI, (3)Agronomy Department, University of Florida, Gainesville, FL University, Ames, IA, (2)USDA-ARS-CICGRU, Ames, IA, (3)ORISE Fellow, USDA-ARS-CICGRU, Ames, IA, (4)National Science Foundation, Arlington, VA, (5)National Center for Genome Resources, Santa Fe, NM P0741: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd

Retroelements of Arachis duranensis (AA) and A ipaënsis (BB) Genomes P0738: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, and their Distribution in Peanut Chromosomes Common Beans - Even 1 2 3 2 Comparing Genome-Guided Assembly and Phased Variants Based Bruna S Vidigal , David Bertioli , Igor Bacon Carvalho , Eliza Nascimento , Patricia Messenberg Guimarães4, Soraya C M Leal-Bertioli5, Ana C M Assembly Approach to Separate the Homoeolog Transcripts in Tetraploid 6 5 Peanut (Arachis hypogaea L) Brasileiro , Marcio de Carvalho Moretzsohn and Ana Claudia Guerra Araujo7, (1)Embrapa Genetic Reserach and Biotechnology, brasilia, Brazil, Ratan Chopra, Texas Tech University, Lubbock, TX, Mark D Burow, Texas (2)University of Brasilia, Brasilia, Brazil, (3)University of Brasilia, brasilia, A&M AgriLife Research, Lubbock, TX and Gloria Burow, USDA-ARS, Brazil, (4)Cenargen-EMBRAPA, Brasilia, Brazil, (5)Embrapa Genetic Lubbock, TX Resources&Biotech, Brasilia, Brazil, (6)EMBRAPA Recursos Genéticos e Biotecnologia, Brasília, Brazil, (7)EMBRAPA, Brasilia, Brazil P0739: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd P0742: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, DArT/DArTseq Based Genetic Maps for Identification of Genomic Common Beans - Even Regions Controlling Oil Content, Fatty Acids and Fresh Seed Dormancy in Deploying Genomic Selection for Improving Complex Traits in Peanut Peanut (Arachis hypogea L) (Arachis hypogea L) Manish K Vishwakarma1, Yaduru Shasidhar1, Manish K Pandey1, Pasupuleti Manish K Pandey1, Hari D Upadhyaya1, Abhishek Rathore1, Pasupuleti Janila1, Janila1, Surendra S Manohar1, Shyam N Nigam1, Hari D Upadhyaya1, Baozhu Roma R Das1, Pawan Khera1, Xuanqiang Liang2, Baozhu Guo3 and Rajeev K Guo2 and Rajeev K Varshney1, (1)ICRISAT, Hyderabad, India, (2)USDA- Varshney1, (1)ICRISAT, Hyderabad, India, (2)Crop Research Institute, ARS, Crop Protection and Management Research Unit, Tifton, GA Guangzhou, China, (3)USDA-ARS, Crop Protection and Management Research Unit, Tifton, GA

P0743: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0746: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even Genes Involved in Drought Stress Response and Tolerance in Wild Peanut Genome of Mesoamerican Common Bean - An Additional Resource for the Relatives Legume Genomics

Patricia Messenberg Guimarães, Cenargen-EMBRAPA, Brasilia, Brazil, Anna Vlasova1, Martha Rendón-Anaya2, Salvador J Capella Gutierrez1, Carolina Morgante, EMBRAPA, Campina Grande, Brazil, Ana Claudia Guerra Miguel Hernandez Oñate2, Andre E Minoche1, Ionas Erb1, Francisco Câmara Araujo, EMBRAPA, Brasilia, Brazil, Soraya C M Leal-Bertioli, Embrapa Ferreira1, Pablo Prieto Barja1, André Corvelo3, Walter Sanseverino4, Gastón Genetic Resources&Biotech, Brasilia, Brazil, Orzenil Bonfim Silva-Junior, Westergaard5, Juliane C Dohm1, Gerogios Pappas6, Soledad Saburido Álvarez2, EMBRAPA Gen Res Biotech & Catholic University Brasilia, Brasilia, Brazil, Darek Kedra1, Irene Gonzalez1, Luca Cozzuto1, Maria A Aguilar Moron1, Roberto C Togawa, EMBRAPA - Brazilian Agricultural Research Corporation, Nuria Andreu1, O Mario Aguilar7, Jordi Garcia-Mas8, Maik Zehnsdorf1, Martín Brasilia, Brazil, David Bertioli, University of Brasilia, Brasilia, Brazil and Ana P Vázquez5, Alfonso Delgado-Salinas9, Luis Delaye10, Ernesto Lowy1, C M Brasileiro, EMBRAPA Recursos Genéticos e Biotecnologia, Brasília, Alejandro Mentaberry11, Rosana P Vianello-Brondani12, José Luís García13, Brazil Tyler Alioto3, Federico Sanchez14, Heinz Himmelbauer1, Marta Santalla15, 1 1 1 Cedric Notredame , Toni Gabaldon , Roderic Guigo and Alfredo Herrera- Estrella2, (1)Center for Genomic Regulation, Barcelona, Spain, (2)Laboratorio P0744: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Nacional de Genómica para la Biodiversidad, Centro de Investigación y de Common Beans - Even Estudios Avanzados del IPN (Cinvestav), Irapuato, Mexico, (3)Centro Nacional First Report of the Construction of a Genetic Linkage Map of Pea Using de Análisis Genómico, Barcelona, Spain, (4)CRAG (CSIC-IRTA-UAB-UB), Genotyping By Sequencing Cerdanyola del Vallés (Barcelona), Spain, (5)Instituto de Agrobiotecnología Rosario (INDEAR), Santa Fe, Argentina, (6)Universidade de Brasilia, Brasília - 1 2 1 2 Yu Ma , William L Holdsworth , Peng Cheng , Michael Mazourek , Clarice J DF, Brazil, (7)Instituto de Biotecnología y Biología Molecular (IBBM), La 3 1 1 Coyne , Dorrie Main and Rebecca McGee , (1)Washington State University, Plata, Argentina, (8)CRAG (CSIC-IRTA-UAB-UB), bellaterra (Cerdanyola del Pullman, WA, (2)Cornell University, Ithaca, NY, (3)USDA ARS, Pullman, Vallès), Spain, (9)Departamento de Botánica, Instituto de Biología, WA Universidad Nacional Autónoma de México, Mexico City, Mexico, (10)Departamento de Ingeniería Genética, Cinvestav Unidad Irapuato, Irapuato, Mexico, (11)Facultad de Ciencias Exactas y Naturales, Universidad de Buenos P0745: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Aires (UBA), Buenos Aires, Argentina, (12)EMBRAPA Rice and Beans, Common Beans - Even Biotechnology Laboratory, Santo Antônio de Goiás, Brazil, (13)Environmental Genomic Insight into the Breeding of Edible Podded Beans in a Snap Biology Department, Centro de Investigaciones Biológicas, (CSIC), Madrid,

1 2 3 1 Spain, (14)Cuernevaca, Cuernavaca, Mexico, (15)Misión Biológica de Galicia, John Hart , Phillip Griffiths , Michael Mazourek , Timothy Porch , Michael A Pontevedra, Spain Gore3 and Jim Myers4, (1)USDA-ARS Tropical Agriculture Research Station, Mayaguez, PR, (2)Cornell University, Geneva, NY, (3)Cornell University, Ithaca, NY, (4)Oregon State University, Corvallis, OR

264 P0747: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0750: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even Genome Sequence of Adzuki Bean, Vigna angularis Genomic Signatures of Common Bean Domestication and Phaseolus Inter- Species Introgression Yang Jae Kang1, Suk-Ha Lee1 and Dani Satyawan2, (1)Seoul National University, Seoul, South Korea, (2)Seoul National University, South Korea, Martha Rendón-Anaya1, Anna Vlasova2, Salvador J Capella Gutierrez2, Ionas Seoul, South Korea Erb2, Pablo Prieto Barja2, Soledad Saburido Álvarez1, Luca Cozzuto2, Heinz 2 2 2 2 Himmelbauer , Cedric Notredame , Toni Gabaldon , Roderic Guigo , Alfonso Delgado-Salinas3, Luis Delaye4 and Alfredo Herrera-Estrella1, (1)Laboratorio P0748: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Nacional de Genómica para la Biodiversidad, Centro de Investigación y de Common Beans - Even Estudios Avanzados del IPN (Cinvestav), Irapuato, Mexico, (2)Center for Genome Sequencing of 15 Phaseolus vulgaris Genotypes in the African Genomic Regulation, Barcelona, Spain, (3)Departamento de Botánica, Instituto Bean Consortium Disease Resistance Breeding Program de Biología, Universidad Nacional Autónoma de México, Mexico City, Mexico, (4)Departamento de Ingeniería Genética, Cinvestav Unidad Irapuato, Tamara Iva Miller, UC Davis, Davis, CA Irapuato, Mexico

P0749: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0751: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Odd Single Molecule, Real-Time Sequencing of the Genomes of Genus Vigna Next Generation Sequencing Identifies Regions of Introgression and Differentially Expressed Genes for Sclerotinia Resistance in Common Hiroaki Sakai1, Ken Naito1, Kazuhito Satou2, Kuniko Teruya2, Eri Ogiso- Bean Tanaka1, Akito Kaga1, Takeshi Itoh1, Takashi Hirano2 and Norihiko Tomooka1, (1)National Institute of Agrobiological Sciences, Tsukuba, Japan, (2)Okinawa Sujan Mamidi1, Samira Mafi Moghaddam1, Rian Lee1, Jim Myers2, Phillip Institute of Advanced Sciences, Okinawa, Japan Miklas3 and Phillip McClean1, (1)Dept of Plant Sciences, North Dakota State University, Fargo, ND, (2)Oregon State University, Corvallis, OR, (3)USDA- ARS, Vegetable and Forage Crops Research Unit, Prosser, WA

P0752: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0754: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Common Beans - Even Modeling the Genetic and Environmental Factors Underlying Post- Characterization of Genetic Diversity and Climatic Selection in Wild Anthesis Reproductive Development in the Common Bean (Phaseolus Common Bean (Phaseolus vulgaris) Using Genotyping By Sequencing vulgaris L) (GBS) Technology Jose Alejandro Clavijo1, Salvador Gezan1, Mellissa Pissaroglo1, Mehul Andrea Ariani, Jorge C Berny and Paul Gepts, University of California, Bhakta2, Kenneth Boote3, James Jones4, Li Zhang4, Melanie Correll4, Abiezer Davis, CA 5 6 7 8 9 Gonzalez , James Beaver , Stephen E Beebe , Idupulapati Rao , Juan Osorno , Raphael Colbert10, Jaumer Ricaurte11, Elvin Roman-Paoli6 and Carlos Eduardo Vallejos1, (1)University of Florida, Gainesville, FL, (2)Dept Horticultural P0755: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Sciences, University of Florida, Gainesville, FL, (3)Agronomy Department, Common Beans - Odd University of Florida, Gainesville, FL, (4)Dept Agri and Biol Engg, University Discovering the Genetic Architecture of Dietary Fiber and Oligosaccharide of Florida, Gainesville, FL, (5)University of Puerto Rico, Moca, PR, Content in Common Bean (Phaseolus vulgaris ) (6)University of Puerto Rico, Mayaguez, PR, (7)CIAT-International Center for 1 2 2 Tropical Agriculture, Medley, FL, (8)CIAT, Cali, Colombia, (9)Plant Sciences Samira Mafi Moghaddam , Dimas Echeverria , Henry J Thompson , Mark A 3 4 1 1 1 - North Dakota State University, Fargo, ND, (10)North Dakota State Brick , Leslie A Brick , Sujan Mamidi , Rian Lee and Phillip McClean , University, Fargo, ND, (11)CIAT, Palmira, Colombia (1)Dept of Plant Sciences, North Dakota State University, Fargo, ND, (2)Colorado State University, Fort Collins, CO, (3)Dept of Soil and Crop

Sciences,Colorado State University, Fort Collins, CO, (4)Universtiy of Rhode P0753: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Island, Kingston, RI Common Beans - Odd

The Consequence of Domestication in the Common Bean P0756: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Elisa Bellucci1, Elena Bitocchi1, Alberto Ferrarini2, Andrea Benazzo3, Eleonora Common Beans - Even Biagetti1, Domenico Rau4, Monica Rodriguez4, Giovanna Attene4, Emidio Comparison of Methylome Sequencing Using MeDIP-Seq and Sodium Albertini5, Scott A Jackson6, Laura Nanni1, Alisdair R Fernie7, Zoran Bisulfite Sequencing in Common Bean (Phaseolus vulgaris) Nikoloski7, Giorgio Bertorelle3, Massimo Delledonne2 and Roberto Papa1, (1)Università Politecnica delle Marche, Ancona, Italy, (2)University of Verona, Mollee C Crampton and Venu (Kal) Kalavacharla, Delaware State University, Verona, Italy, (3)Università degli Studi di Ferrara, Ferrara, Italy, (4)Università Dover, DE degli Studi di Sassari, Sassari, Italy, (5)University of Perugia, Perugia, Italy, (6)University of Georgia, Athens, GA, (7)Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany

265 P0757: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0759: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Odd Use of Next Generation Sequencing for Transcriptomic Analysis of a Genome-Wide Screening for Epigenome Modifications and Transcriptome Deletion Region Containing a Gene Responsible for Rust Resistance in Regulation during Rust Pathogen, Uromyces appendiculatus, Infection in Common Bean (Phaseolus vulgaris L) Common Bean (Phaseolus vulgaris L) Antonette Todd1, Nicole Donofrio2, Phillip McClean3, Rian Lee3 and Venu Vasudevan Ayyappan1, Jyothi Thimmapuram2, Ketaki Bhide3, Antonette (Kal) Kalavacharla1, (1)Delaware State University, Dover, DE, (2)University of Todd1, Yaqoob Thurston4, Tomasz Smolinski1, Muthusamy Manoharan5, Bruce Delaware, Newark, DE, (3)Dept of Plant Sciences, North Dakota State Kingham6 and Venu (Kal) Kalavacharla1, (1)Delaware State University, Dover, University, Fargo, ND DE, (2)Purdue University, West Lafayette, IL, (3)Purdue University, West Lafayette, IN, (4)South Dakota State University, Brookings, SD, (5)University of Arkansan-PIne Bluff, Pine Bluff, AR, (6)University of Delaware-DBI, P0758: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Newark, DE Common Beans - Even

Association Mapping of Angular Leaf Spot and Anthracnose Resistance Loci in Common Bean P0760: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Juliana Morini Kupper Cardoso Perseguini1, João Ricardo Bachega Feijó 2 3 3 Identifying Genomic Regions Controlling Plant Architectural Rosa , Sérgio Augusto Morais Carbonel , Alisson Fernando Chiorato , Antônio Characteristics in Dry Bean (Phaseolus vulgaris L) Augusto Franco Garcia4 and Luciana Lasry Benchimol-Reis1, (1)Research and Development Centre on Natural Genetic Plant Resources, The Agronomic Ali Soltani1, Samira Mafi Moghaddam1, Juan Osorno2 and Phillip McClean1, Institute of Campinas (IAC), Campinas, Brazil, (2)Departamento de Genética, (1)Dept of Plant Sciences, North Dakota State University, Fargo, ND, (2)Plant Escola Superior de Agricultura Luiz de Queiroz/ Universidade de São Paulo Sciences - North Dakota State University, Fargo, ND (USP-ESALq/USP), Piracicaba, Brazil, (3)Grain and Fiber Center, The Agronomic Institute of Campinas (IAC), Campinas, Brazil, (4)Departamento de Genética/ESALQ/USP, Piracicaba - SP, Brazil P0761: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd

QTL Mapping on a Multiparent Advanced Generation Inter Cross (MAGIC) Population for Dry Bean Using Genotype By Sequencing (GBS) Juan David Lobaton, CIAT, Cali, Colombia

P0762: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0765: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Common Beans - Odd Elucidating the Regulation of Alternative Splicing in Mungbean (Vigna Medicago Genome Assembly with Long-Read and Short-Read Sequencing radiata) Jason R Miller1, Brian Walenz1, Li Song2, Peng Zhou3, Thiru Ramaraj4, Peter Dani Satyawan, Seoul National University, South Korea, Seoul, South Korea L Tiffin5, Joann Mudge6, Kevin AT Silverstein7 and Nevin D Young3, (1)J and Suk-Ha Lee, Seoul National University, Seoul, South Korea Craig Venter Institute, Rockville, MD, (2)Johns Hopkins University, Baltimore, MD, (3)Department of Plant Pathology, University of Minnesota, St Paul, MN, (4)National Center for Genome Resources, Santa Fe, NM, P0763: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, (5)Department of Plant Biology, University of Minnesota, Saint Paul, MN, Common Beans - Odd (6)National Center for Genome Resources (NCGR), Santa Fe, NM, Using Genotyping-By-Sequencing to Identify and Annotate Single (7)Supercomputing Institute, University of Minnesota, Minneapolis, MN Nucleotide Polymorphisms in the ICARDA Lentil Reference Collection Gopesh Saha1, Ping Zheng1, Dorrie Main1, Clare Coyne1, Shiv Kumar P0766: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Agrawal2, Kirstin Bett3, Md Nurul Amin1 and Rebecca McGee1, Common Beans - Even (1)Washington State University, Pullman, WA, (2)ICARDA, Rabbat, Morocco, Predication of Hybrid Performance Among USDA Alfalfa Core Collection (3)University of Saskatchewan, Saskatoon, SK, Canada Using AFLP Genetic Distances, Combining Ability Parameters and Physiological Parameters P0764: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Ali H Al Lawati, Oman Animal and Plant Genetic Resources Center, Common Beans - Even MUSCAT, Oman A Study of How Read Depth and Seedling Number Influence the Development of de novo Transcriptomes for Two Leucaena Species Diana V Dugas1, Madhugiri Nageswara-Rao1, Richard Cronn2 and Donovan Bailey1, (1)New Mexico State University, Las Cruces, NM, (2)USDA Forest Service Pacific Northwest Research Station, Corvallis, OR

266 P0767: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0770: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even Progress in Sequencing the Genome of Tetraploid Alfalfa (Medicago sativa Alternative Splicing Detection and Isoform Characterization in Medicago L) truncatula Species

Maria J Monteros1, Thiruvarangan Ramaraj2, Nicolas Devitt2, Connor T Diego A Fajardo1, Maria Harrison2, Anitha Sundararajan3, Kishor K Cameron3, Arvind K Bharti4, Joann Mudge3, Andrew D Farmer2, Christy Bhattarai2, Joann Mudge4 and Nevin D Young5, (1)NCGR, Santa Fe, NM, Motes1, Michael K Udvardi1 and E Charles Brummer5, (1)The Samuel Roberts (2)Boyce Thompson Institute for Plant Research, Ithaca, NY, (3)National Noble Foundation, Ardmore, OK, (2)National Center for Genome Resources, Center for Genome Resources, Santa Fe, NM, (4)National Center for Genome Santa Fe, NM, (3)National Center for Genome Resources (NCGR), Santa Fe, Resources (NCGR), Santa Fe, NM, (5)Department of Plant Pathology, NM, (4)Syngenta, City, NM, (5)University of California, Davis, Davis, University of Minnesota, St Paul, MN CAP0768: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even P0771: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Genome Wide Association Study Using Copy-Number Variants in Common Beans - Odd Medicago truncatula Multiple Medicago assemblies Enable Analysis of Large Gene Families on Joseph Guhlin1, Kevin AT Silverstein2, Peng Zhou1, Andrew D Farmer3, Peter a Genome Scale 4 1 L Tiffin and Nevin D Young , (1)Department of Plant Pathology, University 1 2 3 4 of Minnesota, St Paul, MN, (2)Supercomputing Institute, University of Peng Zhou , Kevin AT Silverstein , Jason R Miller , Joann Mudge , Robert M Stupar5, Peter L Tiffin6, Andrew D Farmer7, Joseph Guhlin1, Roxanne Denny1 Minnesota, Minneapolis, MN, (3)National Center for Genome Resources, Santa 1 Fe, NM, (4)Department of Plant Biology, University of Minnesota, Saint Paul, and Nevin D Young , (1)Department of Plant Pathology, University of MN Minnesota, St Paul, MN, (2)Supercomputing Institute, University of Minnesota, Minneapolis, MN, (3)J Craig Venter Institute, Rockville, MD, (4)National Center for Genome Resources (NCGR), Santa Fe, NM, P0769: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, (5)Department of Agronomy and Plant Genetics, University of Minnesota, St Common Beans - Odd Paul, MN, (6)Department of Plant Biology, University of Minnesota, Saint Molecular Diversity and Population Structure of Worldwide Collection of Paul, MN, (7)National Center for Genome Resources, Santa Fe, NM Cultivated Tetraploid Alfalfa (Medicago sativa subsp sativa L) Germplasm Revealed By Microsatellite Markers Zan Wang, Institute of Animal Science- CAAS, Beijing, China

P0772: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0775: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Common Beans - Odd miR156 Controls Forage Yield and Other Traits in Alfalfa by Regulating Plastome Organization and Sequence for the Mimosoid Legume Leucaena SPL Genes trichandra

Abdelali Hannoufa1, Margaret Y Gruber2, Banyar Aung1, Khaled Omari1 and David Hernandez1, Diana V Dugas1, Madhugiri Nageswara-Rao1, Shannon Lisa Amyot1, (1)Agriculture and Agri-Food Canada, London, ON, Canada, Straub2, Aaron Liston3, Joshua Trujillo1 and Donovan Bailey1, (1)New Mexico (2)Agriculture and Agri-Food Canada, Saskatoon, SK, Canada State University, Las Cruces, NM, (2)Hobart and William Smith Colleges, Geneva, NY, (3)Oregon State University, Corvallis, OR P0773: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd P0776: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Tissue-Specific Expression Profiles of Fiber Genes in the Root-Rot Common Beans - Even Resistant Perfect Variety of Alfalfa Show Preferences for Cellulose A Tale of Four Genomes: de novo Genome Sequencing of Allotetraploid Production in the Stem White Clover (Trifolium repens L) and Its Progenitors Yunchen Gong1, Jianfeng Zhang1, Jessica Yang1, Pauline Fung1, Pauline Andrew G Griffiths1, Roger Moraga1, Stig Uggerhoj Andersen2, Vikas Gupta2 Wang1, Dario Bonetta2, Peter McCourt1, Ryan Austin1 and David Guttman1, and Anthony J Conner1, (1)AgResearch, Grasslands Research Centre, (1)University of Toronto, Toronto, ON, Canada, (2)University of Ontario Palmerston North, New Zealand, (2)Aarhus University, Aarhus, Denmark Institute of Technology, Oshawa, ON, Canada P0777: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0774: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even The First Genetic Map for a Psoraleeae Legume: GBS Mapping of Tedera A Medicago truncatula Cytochrome p450 gene Plays a Role in Penetration (Bituminaria bituminosa var albomarginata) Reveals Highly Conserved Resistance Against Nonhost Pathogen Phakopsora pachyrhizi Synteny with Soybean Upinder S Gill, Shipra Mittal, Jin Nakashima, Yasuhiro Ishiga, Srinavasa R Matthew N Nelson1, Maria Pazos-Navarro1, Daniel Real2, Rust Turakulov3, Uppalapati and Kirankumar S Mysore, The Samuel Roberts Noble Foundation, Kirby Siemering3, Matthew Tinning3 and Jafar Jabbari3, (1)The University of Ardmore, OK Western Australia, Crawley, Australia, (2)Department of Agriculture and Food Western Australia, South Perth, Australia, (3)Australian Genome Research Facility, Parkville, Australia

267 P0778: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0781: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Common Beans - Odd CicArVarDB: Chickpea Variation Database Whole Genome Re-Sequencing Reveals Genome Wide Variations Among Parental Lines of Mapping Populations in Chickpea Dadakhalandar Doddamani1, Aamir W Khan1, Krishnamohan Katta1, Gaurav Agarwal1, Pradeep Ruperao2, David Edwards3 and Rajeev K Varshney1, Mahendar Thudi, Aamir W Khan, Vinay Kumar, Manish Roorkiwal, (1)ICRISAT, Hyderabad, India, (2)University of Queensland, Brisbane, India, Annapurna Chitikineni, Pooran M Gaur, Krishnamohan Katta, Vanika Garg (3)University of Western Australia, Perth, Australia and Rajeev K Varshney, ICRISAT, Hyderabad, India

P0779: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0782: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Even Illumina TruSeq Synthetic Long-Read Sequence Enhances de novo Identification of Candidate Genes from a "QTL-Hotspot" Region for Genome Assembly of Allotetraploid White Clover (Trifolium repens L) Drought Tolerance in Chickpea Using Whole Genome Resequencing Based Bin Mapping Roger Moraga1, Andrew G Griffiths1 and Stig Uggerhoj Andersen2, (1)AgResearch, Grasslands Research Centre, Palmerston North, New Zealand, Sandip M Kale1, Deepa Jaganathan1, Pradeep Ruperao2, Charles Chen3, Ramu (2)Aarhus University, Aarhus, Denmark Punna4, Himabindu Kudapa1, Mahendar Thudi1, Manish Roorkiwal1, 1 5 1 6 Krishnamohan Katta , P B Kavi Kishor , Pooran M Gaur , Jacqueline Batley , David Edwards7, Tim Sutton8 and Rajeev K Varshney1, (1)ICRISAT, P0780: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Hyderabad, India, (2)University of Queensland, Brisbane, Australia, Common Beans - Even (3)CIMMYT, Texcoco, Mexico, (4)Institute for Genomic Diversity, Cornell Population Genetic Diversity of 1000 Wild Chickpea Accessions University, Ithaca, NY, (5)Osmania University, Hyderababd, India, (6)The University of Western Australia, Perth, WA, Australia, (7)University of 1 1 2 Peter L Chang , R Varma Penmetsa , Sergey V Nuzhdin , Eric J von Western Australia, Perth, Australia, (8)Australian Center for Plant Functional 3 1 Wettberg and Douglas R Cook , (1)University of California, Davis, CA, Genomics, Adelaide, Australia (2)University of Southern California, Los Angeles, CA, (3)Florida International

University, Miami, FL

P0783: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0785: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Common Beans - Odd Re-Sequencing of 429 Lines for Understanding Drought and Heat Development of a High-Throughput Magnetic Bead DNA Isolation Tolerance Mechanisms in Chickpea (Cicer arietinum L) Protocol for Dry Cowpea Leaf Samples

Manish Roorkiwal1, Xin Liu2, Anu Chitikineni1, Weiming He2, Hari D Savanah M St Clair, Yi-Ning Guo, Jansen Rodrigo Pereira Santos, Sassoum Upadhyaya1, Dadakhalandar Doddamani1, Jainbo Jian2, Abhishek Rathore1, Lo, Arsenio Daniel Ndeve, Mitchell R Lucas, Steve Wanamaker, Philip A Pooran M Gaur1, Wei Yang2, Sushil Chaturvedi3, Narendra P Singh3, Swapan Roberts and Timothy J Close, University of California, Riverside, CA 4 2 2 1 K Datta , Xu Xun , Jun Wang and Rajeev K Varshney , (1)ICRISAT, Hyderabad, India, (2)Beijing Genomics Institute (BGI), Shenzhen, China, (3)Indian Institute of Pulses Research, Kanpur, India, (4)ICAR, New Dehli, P0786: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, India Common Beans - Even Identification and Introgression of Mozambican Cowpea Alleles to Breed California Blackeyes with Larger Seeds P0784: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Even Mitchell R Lucas1, Bao Lam Huynh2, Philip A Roberts1 and Timothy J Close1, A New SNP-Genotyping Resource for Cowpea and Its Deployment for (1)University of California, Riverside, CA, (2)University of California - Breeding Riverside, Riverside, CA

Timothy J Close1, Mitchell R Lucas1, Maria Muñoz-Amatriain1, Hamid Mirebrahim1, Steve Wanamaker1, Noelle A Barkley2, Savanah St Clair1, Yi- P0787: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Ning Guo1, Sassoum Lo1, Bao Lam Huynh1, Arsenio Daniel Ndeve1, Jansen Common Beans - Odd Rodrigo Pereira Santos1, Batieno T Benoît Joseph3, Tignegre Jean-Baptiste De Sources of Resistance to Ashy Stem Blight Caused By Macrophomina La Salle4, Issa Drabo4, Francis Kusi5, Ibrahim Atokple5, Ousmane Boukar6, phaseolina in the Cowpea Major Gene Pool Two Christian Fatokun6, Ndiaga Cisse7, Pei Xu8, Philip A Roberts1 and Stefano Lonardi1, (1)University of California, Riverside, CA, (2)USDA-ARS, PGRCU, Arsenio Daniel Ndeve, University of California - Riverside, Riverside, CA Griffin, GA, (3)West African centre for Crop Improvement, Legon, Ghana, (4)Institut de l'Environnement et de Recherches Agricoles, Saria, Burkina Faso, (5)CSIR-Savanna Agricultural Research Institute (CSIR-SARI), Tamale, Ghana, (6)International Institute of Tropical Agriculture, Ibadan, Nigeria, (7)Institut Senegalais de la Recherches Agricole, Bambey, Senegal, (8)Zhejiang Academy of Agricultural Sciences, Hangzhou, China

268 P0788: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, P0790: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Common Beans - Even - Even Indel-Seq: A Fast Forward Genetic Approach for Identification of Data Integration for the Plant Research Community: The Arabidopsis Candidate Genomic Regions, an Example in Pigeonpea (Cajanus cajan) Information Portal

Vikas K Singh1, Aamir W Khan1, Hiroki Takagi2, Rachit K Saxena1, Vinay Chia-Yi Cheng1, Erik Ferlanti1, Vivek Krishnakumar1, Maria Kim1, Svetlana Kumar1, Mamta Sharma1, CV SameerKumar1, Pallavi Sinha1, Annapurna Karamycheva1, Benjamin D Rosen1, Matt Hanlon2, Steve Mock2, Joe Stubbs2, Chitikineni1, Suyash Patil1, Sandip M Kale1, Lekha T Pazhamala1, G Walter Moreira2, Rion Dooley2, Sergio Contrino3, Julie Sullivan3, Alex Anuradha3, K N Yamini3, Swathi Parupalli1, V Suryanarayana1, Vanika Garg1, Kalderimis3, Gos Micklem3, Jason R Miller1, Matt Vaughn2 and Christopher D S Muniswamy4, PS Dharmaraj4, Ryohei Terauchi2 and Rajeev K Varshney1, Town1, (1)J Craig Venter Institute, Rockville, MD, (2)Texas Advanced (1)ICRISAT, Hyderabad, India, (2)Iwate Biotechnology Research Center, Computing Center, Austin, TX, (3)Cambridge University, Cambridge, England Kitakami, Iwate, Japan, (3)Acharaya NG Ranga Rao Agricultural University, Hyderabad, India, (4)University of Agricultural Sciences, ARS-Gulbarga, Raichur, India P0791: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd

Genomic Resources for Arabidopsis Research at NCBI P0789: Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd Anjana Raina Vatsan, Terence D Murphy, Valerie Schneider, Brian Smith- Whole Genome Resequencing Reveals Genome Wide Variations Among White, Tatiana Tatusova and Kim D Pruitt, National Center for Biotechnology Parental Lines of Mapping Populations in Pigeonpea Information (NCBI/NLM/NIH), Bethesda, MD

Vinay Kumar, Rachit K Saxena, Vikas K Singh, Aamir W Khan, Annapurna Chitikineni, CV SameerKumar and Rajeev K Varshney, ICRISAT, Hyderabad, P0792: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis India - Even Developing Content for the Arabidopsis Information Portal Matt Vaughn1, Jason R Miller2, Erik Ferlanti2, Vivek Krishnakumar2, Maria Kim2, Svetlana Karamycheva2, Benjamin D Rosen2, Chia-Yi Cheng2, Matt Hanlon1, Steve Mock1, Joe Stubbs1, Rion Dooley1, Walter Moreira1, Sergio Contrino3, Julie Sullivan3, Alex Kalderimis3, Gos Micklem3 and Christopher D Town2, (1)Texas Advanced Computing Center, Austin, TX, (2)J Craig Venter Institute, Rockville, MD, (3)Cambridge University, Cambridge, England

P0793: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0796: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd - Even The Arabidopsis Biological Resource Center and the Plant Antibody Dominance Hierarchy Arising from the Evolution of a Complex Small Facility: Providing Researchers with Simple and Efficient Access to Seed, RNA Regulatory Network Brassicaceae DNA, and Antibody Resources Helene Berges1, Vincent Castric2, William Marande3, Elisa Prat3, Eleonore Diana Shin, Jelena Brkljacic, Debbie Crist, Luz Rivero and Erich Grotewold, Durand4, Raphael Meheust5, Marion Soucaze5, Sophie Gallina5, Celine Poux5, The Arabidopsis Biological Resource Center, Plant Antibody Facility, Center Isabelle Fobis-Loisy6, Thierry Gaude7, Alexis Sarazin8, Martin Figeac9, Xavier for Applied Sciences, The Ohio State University, Columbus, OH Vekemans5, Sylvain Billiard5, Eline Guillon10 and Pauline Goubet5, (1)Plant Genomic Center - INRA Toulouse, Castanet-Tolosan, France, (2)CNRS - Universite Lille 1, Villeneuve d'Ascq, France, (3)INRA - CNRGV, Castanet P0794: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Tolosan, France, (4)Laboratoire Génétique et Evolution des Populations - Even Végétales, CNRS UMR 8198, Université Lille1, Villeneuve d’Ascq cedex, HRGRN: A Graph Search-Empowered Integrative Database of France, (5)Laboratoire Génétique et Evolution des Populations Végétales, Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Villeneuve d’Ascq cedex, France, (6)Reproduction et Développement des Networks Plantes, Institut Fédératif de Recherche 128, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Xinbin Dai, Jun Li, Tingsong Liu and Patrick Xuechun Zhao, The Samuel Claude Bernard Lyon I,, Lyon, France, (7)Reproduction et Développement des Roberts Noble Foundation, Ardmore, OK Plantes, Institut Fédératif de Recherche 128, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Claude Bernard Lyon I, Lyon, France, (8)Department of Biology, Zurich, P0795: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Switzerland, (9)Université de Lille2 and Plate-forme de génomique - Odd fonctionnelle et structurale, Lille, France, (10)Reproduction et Développement Meiosis in Brassica: From Model to Crop des Plantes, Institut Fédératif de Recherche 128,, Lyon, France Maria Cuacos, Kim Osman, Elaine C Howell, Chris Franklin and Susan Armstrong, University of Birmingham, Birmingham, United Kingdom

269 P0797: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0799: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd - Odd

Frequent Parallel Loss of Bsister MADS-Box Genes in Brassicaceae The Effect of Helium Plasma-Treatment during Pollination of Brassica Genomes Species

Annette Becker1, Lydia Gramzow2, Andrea Hoffmeier3, Amey S Bhide4, Moe Nabemoto1, Runa Ichinoseki2, Mayu Sato3, Chigusa Tanno4, Hiromi Olesia Gavryliuk4, Nina Kottenhagen3, Klaus Mummenhoff5 and Günter Masuko-Suzuki1, Satomi Sakazono1, Keita Suwabe5, Go Suzuki6, Yukihiro Theißen2, (1)Justus-Liebig-University Gießen, Gießen, Germany, (2)Friedrich Ito1, Jun Hidema1, Kazunori Takahashi1, Akira Ando1 and Masao Watanabe1, Schiller University Jena, Jena, Germany, (3)Friedrich-Schiller-University, Jena, (1)Tohoku University, Sendai, Japan, (2)Akita Prefectural Akita Minami Senior Germany, (4)Justus-Liebig-University, Gießen, Germany, (5)Osnabrueck High School, Akita, Japan, (3)Yamagata Prefectural Yamagata Nishi Senior University, Osnabrück, Germany High School, Yamagata, Japan, (4)Miyagi Prefectural Sendai Nika Senior High School, Sendai, Japan, (5)Mie University, Tsu, Japan, (6)Osaka Kyoiku University, Kashiwara, Japan P0798: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Investigating Drought Stress Responses of Diverse Natural Variants of P0800: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Brassica - Even

1 2 2 1 Comparative Transcriptome Analysis Between Pre- and Post-Pollination Dianne Pater , Jack L Mullen , John McKay and Julian I Schroeder , in Arabidposis thaliana (1)University of California San Diego, La Jolla, CA, (2)Colorado State University, Fort Collins, CO Tomoki Matsuda1, Mai Matsushima1, Moe Nabemoto2, Masaaki Osaka2, 2 2 2 Satomi Sakazono , Hiromi Masuko-Suzuki , Mikako Sone , Hirokazu Takahashi3, Mikio Nakazono3, Megumi Iwano4, Seiji Takayama4, Kentaro K Shimizu5, Kentaro Yano6, Go Suzuki7, Masao Watanabe2 and Keita Suwabe1, (1)Mie University, Tsu, Japan, (2)Tohoku University, Sendai, Japan, (3)Nagoya university, Nagoya, Japan, (4)Nara Institute of Science and Technology, Ikoma, Nara, Japan, (5)IEU, University Zurich, Zurich, Switzerland, (6)School of Agri, Meiji University, CREST, JST, Kawasaki, Japan, (7)Osaka Kyoiku University, Kashiwara, Japan

P0801: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0804: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd - Even Establishment of Dynamic Imaging of Pollination in Arabidopsis thaliana Arabidopsis MSH1 Mutation Alters the Epigenome and Produces Heritable Changes in Plant Growth Mai Matsushima1, Mei Ando1, Tomoki Matsuda1, Moe Nabemoto2, Mikako Sone2, Kenichiro Hiroi2, Satomi Sakazono2, Hiromi Masuko-Suzuki2, Kentaro Kamaldeep S Virdi, University of Nebraska Lincoln, Lincoln, NE 3 4 2 1 Yano , Go Suzuki , Masao Watanabe and Keita Suwabe , (1)Mie University, Tsu, Japan, (2)Tohoku University, Sendai, Japan, (3)School of Agri, Meiji University, CREST, JST, Kawasaki, Japan, (4)Osaka Kyoiku University, P0805: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Kashiwara, Japan - Odd Investigation of the Regulation Mechanisms of Ion Channels in Arabidopsis Guard Cells P0802: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even Yong-Fei Wang1, Li-Li Gu1, An Zhang2, Feng-Yong Yao2 and Yan-Qiu Tan2, An Investigation of the Interaction Between Two Phosphorylation Sites in (1)Shanghai Institute of Plant Physiology and Ecology, SIBS, CAS, Shanghai, a Splicing Activator SR451 in Arabidopsis thaliana China, (2)Shanghai Institute of Plant Physiology & Ecology, SIBS, CAS, Shanghai, China 1 1 2 Yeon Joo Hong , Vivian Lee and Xiao-Ning Zhang , (1)St Bonaventure University, St Bonaventure, NY, (2)St Bonaventure University, St Bonaventure, NY P0806: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even

Environmental Regulation of Plant Stomatal Development By Cell Fate P0803: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Morphogens in Arabidopsis thaliana - Odd Reconsidering Homeolog Silencing of Allopolyploid Gene Expressions in Cawas Engineer, University of California San Diego, San Diego, CA, Wouter- Arabidopsis Jan Rappel, University of California San Diego, La Jolla, CA, Tak Lee, Yonsei University, Seoul, South Korea, Insuk Lee, Yonsei University, Korea, Seoul, Satoru Akama, Tokyo Institute of Technology, Tokyo, Japan, Kentaro K South Korea, Seung Yon Rhee, Carnegie Institution for Science, Stanford, CA Shimizu, IEU, University Zurich, Zurich, Switzerland, Rie Shimizu-Inatsugi, and Julian I Schroeder, University of California San Diego, La jolla, CA University of Zurich, Zurich, Switzerland and Jun Sese, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan

270 P0807: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0811: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd - Odd T-DNA Insertion Lines with Altered Root System Architecture in Genetic and Biochemical Characterization of AIN3 in Plant Immunity Arabidopsis thaliana Yi Liu, Horticulture department, Virginia Tech, Blacksburg, VA and Bingyu Kianoush Nikoumanesh1, Brian Jones2 and Jennifer A Saleeba1, (1)University Zhao, Virginia Tech, Blacksburg, VA of Sydney, Sydney, Australia, (2)The University of Sydney, Sydney, Australia P0812: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0808: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even - Even Arabidopsis PYL8 gene Plays a Role in Drought Tolerance

Expression Profiling of the Arabidopsis UCP Gene Family Under Abiotic 1 1 2 1 and Biotic Stress Han Yong Lee , Tae Young Um , Chanseok Shin and Yang Do Choi , (1)Department of Agricultural Biotechnology Seoul National University, Seoul, Alessandra Vasconcellos Nunes, Juliana Pereira Bravo and Ivan G Maia, IB - South Korea, (2)Seoul National University, Seoul, South Korea UNESP - Department of Genetics, Botucatu, Brazil P0813: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0809: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd - Odd Omics-Directed Reverse Genetics Enables the Creation of Influence of Magnesium Supply on the Root Development of Arabidopsis Improved Productivity Traits in Canola thaliana Bart Lambert, Bayer Cropscience NV, Gent, Belgium Christian RM Hermans, Université Libre de Bruxelles, Lab of Plant Physiology and Molecular Genetics, Brussels, Belgium, Qiying Xiao, Université Libre de Bruxelles, Laboratory of Plant Physiology and Molecular P0814: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Genetics, Brussels, Belgium and Nathalie Verbruggen, Université Libre de - Even Bruxelles, Lab Plant Physiology and Molecular Genetics, Brussels, Belgium Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa P0810: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Feng Cheng1, Terezie Mandakova2, Xiaowu Wang1 and Martin A Lysak2, - Even (1)Institute of Vegetables and Flowers, Beijing, China, (2)CEITEC, Masaryk Folic Acid Plays a Critical Role in Nonhost Resistance University, Brno, Czech Republic

Madan K Bhattacharyya, Iowa State University, Ames, IA

P0815: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0819: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd - Odd Patterns of Evolutionary Conservation of Ascorbic Acid-Related Genes Using miRNA in Quantitative Trait Analysis - Brassica napus Following Whole-Genome Triplication in Brassica rapa Andrea Hatlen1, Geoffrey Wagner2, Birgit Samans2, Richard A Nichols1 and Weike Duan, College of Horticulture-Nanjing Agricultural College, Nanjing, Rod Snowdon2, (1)Queen Mary University of London, London, United China Kingdom, (2)Justus Liebig University, Giessen, Germany

P0816: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0820: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even - Even Assessing and Validating the Amphidiploid Genome of Brassica napus A Genome-Wide Association Study of Nitrogen Use Efficiency in Rapeseed Using Genotyping By Sequencing (Brassica napus) Philipp Emanuel Bayer, University of Queensland, Brisbane, Australia Feng Li1, Hiroyasu Kitashiba2, Takeshi Nishio2 and Xiaoming Wu3, (1)Oil Crops Research Institute,CAAS, Sendai, Japan, (2)Graduate School of Agricultural Science, Tohoku University, Sendai, Japan, (3)Oil Crops Research P0817: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Institute, Chinese Academy of Agricultural Sciences, Wuhan, China - Odd

Systems Genetics of Crowding Tolerance in Brassica rapa P0821: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Cody Markelz1, Upendra Kumar Devisetty1, Michael Covington2 and Julin N - Odd 3 Maloof , (1)University of California, Davis, CA, (2)University of California Genome-Wide Association Study of the Complex Traits in Amphidiploid Davis, Davis, CA, (3)University of California, Davis, DAVIS, CA Rapeseed (Brassica napus L)

Xiaoming Wu, Oil Crops Research Institute, Chinese Academy of Agricultural P0818: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Sciences, Wuhan, China and Feng Li, Oil Crop Research Institute, Chinese - Even Academy of Agricultural Sciences, Wuhan, China Homeologous Non-Reciprocal Translocations (HNRT) Induce Selectable Genetic Variation in Brassica napus Birgit Samans1, Boulos Chalhoub2 and Rod Snowdon1, (1)Justus Liebig University, Giessen, Germany, (2)URGV-INRA, Evry, France

271 P0822: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0825: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even - Odd Development of New Oilseed Rape (Brassica napus) Variety with Isolation of the Genes Coding for Putative DNA Binding Proteins Increasing Oleic Acid Content Using Molecular Markers Differentially Regulated By Cold Treatment in Brassica napus

Mi-So Jang, Fungi and Plants Co,Ltd, Chungcheongbuk-do, South Korea, Sung-Il Lee1, Kwang-Soo Kim2, Young-Seok Jang2, Nam-Soo Kim1 and Soonbong Lee, Fungi and Plants Co,Ltd, Chungcheonbuk-do, South Korea, Kyong-Cheul Park1, (1)Kangwon National University, Chuncheon, South Kil-Young Yun, Fungi and Plants Co,Ltd, Chungcheongbuk, South Korea and Korea, (2)Bioenergy Crop Research Center, Rural Development Shinje Kim, Fungi and Plants Co,Ltd, Chungcheongbuk-do, South Korea Administration, Muan, South Korea

P0823: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0826: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd - Even QTL Analysis for Erucic Acid and Oleic Acid Content in Brassica napus Development of Doubled Haploid Inbred Lines Using Microspore Culture Using F2 Population in Radish (Raphanus sativus L) Soonbong Lee1, Mi-So Jang2, Eun-Ji Jeon3, Kil-Young Yun4 and Shinje Kim3, Suhyoung Park1, Won Byoung Chae1 and Yong Pyo Lim2, (1)National (1)Fungi and Plants Co, Ltd, Chungcheonbuk-do, South Korea, (2)Fungi and Institute of Horticultural & Herbal Science, Suwon, South Korea, (2)Chungnam Plants Co, Ltd, Chungcheongbuk-do, South Korea, (3)Fungi and Plants Co, National University, Daejeon, South Korea Ltd, Chungcheongbuk-do, South Korea, (4)Fungi and Plants Co, Ltd, chungcheongbuk, South Korea P0827: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd P0824: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis On the Origin of B-like Chromosomes in Boechera (Brassicaceae) - Even Terezie Mandakova1, Christiane Kiefer2, Hans de Jong3, M Eric Schranz3 and Identification and Characterisation of Candidate Genes in Brassica napus 1 Conferring Resistance to Blackleg Disease Martin A Lysak , (1)CEITEC, Masaryk University, Brno, Czech Republic, (2)Max Planck Institute for Plant Breeding Research, Cologne, Germany, Reece Tollenaere1, Salman Alamery2, Satomi Hayashi2, Philipp Emanuel (3)Wageningen University, Wageningen, Netherlands 2 2 2 Bayer , David Edwards and Jacqueline Batley , (1)University of Queensland, St Lucia, Australia, (2)University of Queensland, Brisbane, Australia

P0828: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0833: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even - Odd Comparative Proteomic Analysis in Clubroot-Susceptible and Resistant Genome Evolution and the Origin of Australian Crucifers Cabbage Inbred Lines Terezie Mandakova, Milan Pouch, Klara Harmanova and Martin A Lysak, Jeong Mee Park, Korea Research Institute of Bioscience& Biotechnology, CEITEC, Masaryk University, Brno, Czech Republic Daejeon, South Korea P0834: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0829: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even - Odd Phylogenomic Analyses of 1-Aminocyclopropane-1-Carboxylate Synthase Develop Anthocyanin Synthesis Related Markers Based on RNA-Seq from Genes and Their Role in Phenotypic Plasticity to Drought Stress Purple and Green Cabbage Abdelali Barakat1, Fernando Pasan1 and David Siemens2, (1)University of Myeong-il Mun1, Yoon Kang Hur1 and Illsup Nou2, (1)Chungnam National South Dakota, Vermillion, SD, (2)Black Hill State University, Spearfish, SD University, Daejeon, South Korea, (2)Sunchon National University, Suncheon, South Korea P0835: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Odd P0831: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis Towards an Anchored Reference Genome for Field Pennycress (Thlaspi - Odd arvense L)

Identification and Characterization of Genic Male Sterility-Related Genes 1 1 2 2 from Chinese Cabbage Kevin M Dorn , Evan B Johnson , Donald L Wyse and M David Marks , (1)University of Minnesota, St Paul, MN, (2)University of Minnesota, St Paul, Xiangshu Dong and Yoon Kang Hur, Chungnam National University, MN Daejeon, South Korea P0836: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0832: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis - Even - Even A Transformative Platform Deciphers the RNA Structural Code in Living Cap Binding Complex Proteins of Indian Mustard (Brassica juncea): Cells Cloning, Characterization and Evaluation of their Role in Abiotic Stress Tolerance Yiliang Ding, John Innes Centre, Norwich, United Kingdom

Neha Lakhanpal and Kashmir Singh, Panjab University, Chandigarh, India

272 P0837: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0841: Genome Mapping, Tagging & Characterization: Tomato, Potato, - Odd Pepper - Odd Genome Wide Copy Number Variation in the Canine Genome Genome-Wide Association Studies for Autopolyploids - Potato Maria T Haag1, Robert D Schnabel2 and Jeremy F Taylor2, (1)University of Umesh R Rosyara, University of Wisconsin-Madison, Madison, WI and Missouri-Columbia, Columbia, MO, (2)Division of Animal Sciences, Jeffrey Endelman, University of Wisconsin Department of Horticulture, University of Missouri, Columbia, MO Madison, WI

P0838: Genome Mapping, Tagging & Characterization: Brassicas, Arabidopsis P0842: Genome Mapping, Tagging & Characterization: Tomato, Potato, - Even Pepper - Even Large Dataset Analysis for Undergraduates: Discovery Environment, Unraveling the Heterozygosity in Unique Structured Diploid RNA-Seq and Leaf Senescence in Arabidopsis thaliana Populations of Potato Judy A Brusslan, California State University, Long Beach, Long Beach, CA C Robin Buell1, Emily Crisovan1, Joseph Coombs1, Yuehua Cui1, David 1 1 1 2 Douches , John Paul Hamilton , Michael Hardigan , Jiming Jiang , Parker Laimbeer3, Xu Liu1, Norma C Manrique Carpintero1, Alexandre Marand2, P0839: Genome Mapping, Tagging & Characterization: Tomato, Potato, Rachel Naegele1, Linsey Newton1, Gina Pham1, Kendall Upham3, Brieanne Pepper - Odd Vaillancourt1, Richard E Veilleux3, Honglang Wang1, Susan Wielgus2 and Accessing SGN Genomes through Tools Zixian Zeng2, (1)Michigan State University, East Lansing, MI, (2)University of Wisconsin-Madison, Madison, WI, (3)Virginia Tech, Blacksburg, VA Susan R Strickler, Boyce Thompson Institute for Plant Research, Ithaca, NY

P0843: Genome Mapping, Tagging & Characterization: Tomato, Potato, P0840: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Pepper - Even A Systems Biology Approach to Understanding Anthocyanin Biosynthesis Genotyping-By-Sequencing of a Diploid Potato F2 Population and Regulation in Potato Jeffrey Endelman, University of Wisconsin Department of Horticulture, Cory D Hirsch1, Rachael Hume2, Jason Cepela2, David Douches2, Nathan M Madison, WI and Shelley Jansky, USDA-ARS, Madison, WI Springer1 and C Robin Buell2, (1)University of Minnesota, Saint Paul, MN, (2)Michigan State University, East Lansing, MI

P0844: Genome Mapping, Tagging & Characterization: Tomato, Potato, P0847: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Pepper - Odd Targeted Sequencing and De Novo Assembly of a Highly Repetitive Gene Genome-Wide Association Study and Accuracy of Genomic Selection Family with Long PacBio Reads of Inserts - Potato Models in Tomato F1 Varieties in Japan Kamil Witek, Florian Jupe, Agnieszka I Witek and Jonathan DG Jones, The Eiji Yamamoto1, Hiroshi Matsunaga1, Akinori Suzuki2, Mai Minamikawa2, Sainsbury Laboratory, Norwich, United Kingdom Hiromi Kajiya-Kanegae2, Akio Onogi2, Tsukasa Nunome1, Hirotaka 1 1 1 1 Yamaguchi , Koji Miyatake , Satomi Negoro , Akio Ohyama , Hiroyoshi Iwata2 and Hiroyuki Fukuoka1, (1)NARO Institute of Vegetable and Tea P0845: Genome Mapping, Tagging & Characterization: Tomato, Potato, Science (NIVTS), Tsu, Mie, Japan, (2)The University of Tokyo, Tokyo, Japan Pepper - Odd

Bulk Segregant RNA-Seq to Investigate the Production of Anthocyanins in Potato Corollas P0848: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even 1 1 2 1 Parker Laimbeer , Andreas Doulis , Brenda Peterson and Richard Veilleux , Molecular Characterization of the Unintended and Unexpected Effects of (1)Virginia Tech - Department of Horticulture, Blacksburg, VA, (2)Virginia Genetic Engineering on the Endogenous Solanum tuberosum Genome Tech - Department of Biological Sciences, Blacksburg, VA Lerato Bame Tsalaemang Matsaunyane, Agricultural Research Council, Pretoria, South Africa P0846: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Identification and Characterization of Iron-Related Genes in Andean P0849: Genome Mapping, Tagging & Characterization: Tomato, Potato, Potato Cultivars Pepper - Odd

1 1 2 Combined Fluorescent and Electron Microscopic Imaging Unveils the Hua Xiao , Tatiana Boluarte Medina , Merideth Bonierbale , Mark A Specific Properties of Two Classes of Meiotic Crossovers - Tomato Williams1 and Richard E Veilleux1, (1)Virginia Tech, Blacksburg, VA, (2)International Potato Center, Lima, Peru Lorinda Anderson1, Leslie Lohmiller1, Xiaomin Tang1, Boyd Hammond1, 1 1 2 Lauren Bombardier , Lindsay Shearer , Sayantani Basu-Roy , Olivier C Martin2 and Matthieu Falque2, (1)Colorado State University, Fort Collins, CO, (2)INRA/CNRS/Univ Paris-Sud/AgroParisTech, Gif-sur-Yvette, France

273 P0850: Genome Mapping, Tagging & Characterization: Tomato, Potato, P0853: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Pepper - Odd National Bioresource Project-Tomato in Japan : Collection of Micro-Tom Diversity Between Italian Landraces and Contemporary Tomato Varieties Mutants and Fruit Metabolic Profiles Giandomenico Corrado, Daria Scarano, Martina Caramante and Rosa Rao, Ken Hoshikawa1, Masahito Shikata1, Tohru Ariizumi1, Naoya Fukuda1, Università di Napoli Federico II, Portici (NA), Italy 2 3 4 1 Yoshinori Kanayama , Yasutaka Kubo , Koh Aoki and Hiroshi Ezura , (1)University of Tsukuba, Tsukuba, Japan, (2)Tohoku University, Sendai, Japan, (3)Okayama University, Okayama, Japan, (4)Osaka Prefecture P0854: Genome Mapping, Tagging & Characterization: Tomato, Potato, University, Sakai, Japan Pepper - Even Tomato Domestication, From a Wild Ancestor to Crop Varieties : A Transcriptional Landscape Overview P0851: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Christopher Sauvage, INRA GAFL, Montfavet, France Breeding for Nutritional Traits in Tomato Using Naturally Occurring Variation in the Fruit Specific Beta-Cyclase Promoter P0855: Genome Mapping, Tagging & Characterization: Tomato, Potato, Caleb Orchard1, Jessica Cooperstone2, Gabriel Abud1, Elisabet Gas-Pascual1, Pepper - Odd Steven Schwartz2, Marcela Carvalho Andrade1 and David M Francis1, (1)The Combined Correlation-Based Network and mQTL Analyses Efficiently Ohio State University, OARDC, Wooster, OH, (2)The Ohio State University, Identified Loci for Branched Chain Amino Acid, Serine to Threonine, and Food Science and Technology, Columbus, OH Proline Metabolism in Tomato Seeds

1 1 2 1 Albert Batushansky , David Toubiana , Oren Tzfadia , Asif Khan , Simon P0852: Genome Mapping, Tagging & Characterization: Tomato, Potato, Barak1, Daniel Zamir3, Zoran Nikoloski4, Alisdair R Fernie4 and Aaron Fait5, Pepper - Even (1)Ben-Gurion University, Midreshet Ben-Gurion, Israel, (2)Weizmann TOMATOMICS: An Integrated Database for Omics Information in Institute of Science, Rehovot, Israel, (3)The Hebrew University of Jerusalem, Tomato Rehovot, Israel, (4)Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany, (5)Ben-Gurion University, Midreshet Ben Gurion, Soichi Ozaki1, Masaaki Kobayashi1, Maasa Kanno1, Kyoko Morimoto1, Mai Israel 1 2 1 1 Takazawa , Koh Aoki , Hajime Ohyanagi and Kentaro Yano , (1)School of Agri, Meiji University, CREST, JST, Kawasaki, Japan, (2)Osaka Prefecture University, Sakai, Japan

P0856: Genome Mapping, Tagging & Characterization: Tomato, Potato, P0859: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Pepper - Odd Fruit Weight Regulation in Tomato: Identification and Validation of Novel Genetic Regulation and Impacts of Acylsugar Chemotype in Tomato QTLs Brian M Leckie, Darlene M De Jong, John R Smeda and Martha A Mutschler, Eudald Illa-Berenguer and Esther van der Knaap, The Ohio State University - Cornell University, Ithaca, NY OARDC, Wooster, OH P0860: Genome Mapping, Tagging & Characterization: Tomato, Potato, P0857: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Pepper - Odd Isolation and Genomic Characterization of Heat Tolerant Mutant Lines The Genetic and Metabolic Changes Associated with the Tangerine from Micro-Tom Mutant Collections Virescent Mutation in Tomato Shoma Fukumoto1, Sayaka Ooshima2, Mina Aiba2, Ken Hoshikawa3 and Elisabet Gas-Pascual1, Jessica Cooperstone2, Susana De Jesus1, Ken M Riedl2, Hiroshi Ezura3, (1)Graduate School of Life and Environmental Sciences, Steven Schwartz2 and David M Francis1, (1)The Ohio State University, University of Tsukuba, Tsukuba, Ibaraki, Japan, (2)Central Japan Railway OARDC, Wooster, OH, (2)The Ohio State University, Food Science and Company, Aichi, Japan, (3)Faculty of Life and Environmental Sciences, Technology, Columbus, OH University of Tsukuba, Ibaraki, Japan

P0858: Genome Mapping, Tagging & Characterization: Tomato, Potato, P0861: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Pepper - Odd Understanding the Molecular Basis of Phytonutrient Composition Development of Functional Molecular Marker System to Differentiate Differences in Organic Tomatoes Via Quantitative Transcriptome Analysis Multiple Disease Resistances in Tomatoes - Tomato (Solanum lycopersicum) Hyun Jung Kim1, Jungsu Jung2, Je Min Lee3, Chang Sik Oh4 and Inhwa Richard Sharpe1, Seanna L Hewitt2, James L Crabb2, Benjamin Kilian2, Yeam2, (1)Institute of Agricultural Science and Technology, Andong National Christopher Hendrickson2 and Amit Dhingra3, (1)Molecular Plant Sciences University, Kyoungbukdo, South Korea, (2)Department of Horticulture and Graduate Program, Pullman, WA, (2)Washington State University, Pullman, Breeding, Andong National University, Kyoungbukdo, South Korea, WA, (3)Department of Horticulture, Washington State University, Pullman, (3)Department of Horticultural Science, Kyungpook National University, WA Daegu, South Korea, (4)Department of Plant Science, Kyung Hee University, Gyeonggi-do, South Korea

274 P0862: Genome Mapping, Tagging & Characterization: Tomato, Potato, P0864: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even Pepper - Even Reassessment of QTLs for Late Blight Resistance in the Tomato Accession Tomato Root Small-RNA Transcriptome Dynamics in Response to Potato L3708 Using a Restriction Site Associated DNA (RAD) Linkage Map and Cyst Nematode Infection Highly Aggressive Isolates of Phytophthora infestans Marek D Koter1, Magdalena Swiecicka1, Waldemar Skowron1, Joanna Weso&y2 Ai-Lin Chen1, Chu-Yin Liu1, Chien-Hua Chen2, Jaw-Fen Wang2, Yu-Chen and Marcin Filipecki1, (1)Warsaw University of Life Sciences - SGGW, Liao3, Chia-Hui Chang3, Mong-Hsun Tsai1, Kae-Kang Hwu1 and Kaiyi Chen1, Warszawa, Poland, (2)Institute of Molecular Biology and Biotechnology, (1)National Taiwan University, Taipei, Taiwan, (2)AVRDC-The World Adam Mickiewicz University, Pozna), Poland Vegetable Center, Tainan, Taiwan, (3)Known-You Seed Co, LTD, Kaohsiung, Taiwan P0865: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd P0863: Genome Mapping, Tagging & Characterization: Tomato, Potato, A Map-Based Cloning Approach for the Identification of a Low Pepper - Odd Temperature Sensitive Gene Sy-2 in Chilli Pepper (Capsicum chinense) de novo Sequencing and Analysis of Multiple Pepper Genomes Provide 1 1 1 2 2 Insight into the Evolution of Capsicum spp LI LIU , Jin-Ho Kang , Yeong Deuk Jo , Sota Koeda , Munetaka Hosokawa , Doil Choi3 and Byoung-Cheorl Kang1, (1)Department of Plant Science and Seungill Kim1, Yong-Min Kim2, Seon-In Yeom3, Myung-Shin Kim1 and Doil Plant Genomics Breeding Institute, Seoul National University and Vegetable Choi1, (1)Department of Plant Science, Plant Genomics and Breeding Institute Breeding Research Center, Seoul, South Korea, (2)Kyoto University, Kyoto, and Interdisciplinary Program in Agricultural Genomics, Seoul National Japan, (3)Department of plant science, PGBI of CALS, SNU, Seoul, South University, Seoul, South Korea, (2)Korea Bioinformation Center, Korea Korea Research Institute of Bioscience and Biotechnology, Daejon, South Korea, (3)Department of Horticulture, Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, South Korea P0866: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even

TPGAS: The Transcriptome Platform for Gene Expression and Alternative Splicing Studies in Pepper (Capsicum annuum L) Myung-Shin Kim, Seungill Kim and Doil Choi, Department of Plant Science, Plant Genomics and Breeding Institute and Interdisciplinary Program in Agricultural Genomics, Seoul National University, Seoul, South Korea

P0867: Genome Mapping, Tagging & Characterization: Tomato, Potato, P0871: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Odd Pepper - Odd An Integrated Genomics Approach to Study Petunia Development Rate Optical Mapping of the Solanum arcanum Genome Yufang Guo, Krystle Wiegert-Rininger, Veronica Vallejo, Cornelius S Barry Sander A Peters1, Paola Gaiero2, Henri van de Geest1, Saulo Aflitos3, Gabino and Ryan M Warner, Michigan State University, East Lansing, MI F Sanchez Perez3 and Hans de Jong4, (1)Plant Research International, Wageningen, Netherlands, (2)Department of Genetics - Wageningen University, Wageningen, Netherlands, (3)Plant Research International, P0868: Genome Mapping, Tagging & Characterization: Tomato, Potato, Wageningen University, Wageningen, Netherlands, (4)Wageningen University, Pepper - Even Wageningen, Netherlands Assembly of a Multifunctional Speciation Island in Petunia Michel Moser, Institute of Plant Sciences - University of Bern, Bern, P0872: Genome Mapping, Tagging & Characterization: Fruit Species - Even Switzerland VitisCyc: A Metabolic Pathway Knowledgebase for Grape (Vitis vinifera)

Sushma Naithani1, Justin L Elser1, Eli Nathaniel Waddell2 and Pankaj P0869: Genome Mapping, Tagging & Characterization: Tomato, Potato, Jaiswal1, (1)Department of Botany & Plant Pathology, Oregon State University, Pepper - Odd Corvallis, OR, (2)Oregon State University, Corvallis, OR Characterization of the Rk1 Resistance to Nematode in Nicotiana tabacum By RNA-Seq Analysis Emilie Julio, Julien Cotucheau, Christophe Decorps, Thibaut Laurent and François Dorlhac de Borne, Imperial Tobacco Group, Bergerac, France

P0870: Genome Mapping, Tagging & Characterization: Tomato, Potato, Pepper - Even The Tobacco Genome Sequence Nicolas Sierro, James Battey, Sonia Ouadi, Nicolas Bakaher, Lucien Bovet, Simon Goepfert, Manuel C Peitsch and Nikolai V Ivanov, Philip Morris International R&D, PMP SA, Neuchatel, Switzerland

275 P0873: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0875: Genome Mapping, Tagging & Characterization: Fruit Species - Odd VitisGen on the Road: Mapping the Way to the Next Generation of Grapes Preliminary Identification of QTLs Controlling Water Use Efficiency in ‘Gala’ Apple (Malus x domestica) Shanshan Yang1, Jonathan Fresnedo Ramirez2, Elizabeth M Takacs1, Paola Barba1, Katie Hyma2, Jacquelyn Lillis3, Charlotte Acharya2, Ann Fisher2, Linda Timothy Artlip1, John L Norelli2, Michael Wisniewski2, Gennaro Fazio3 and Cote2, David Manns1, Imelda Ryona1, David Gadoury1, Bob Seem1, Gavin Mike Glenn2, (1)USDA-ARS-Appalachian Fruit Research Station, Sacks2, Anna Katherine Mansfield1, Craig A Ledbetter4, James J Luby5, Peter Kearneysville, WV, (2)USDA-ARS, Kearneysville, WV, (3)USDA-ARS, Hemstad5, Anne Fennell6, Chin-Feng Hwang7, Andrew Walker8, Summaira Geneva, NY 8 3 3 9 2 Riaz , Peter Cousins , Jason Londo , Edward S Buckler , Sharon E Mitchell , Peter Schweitzer2, Qi Sun9, Lance Cadle-Davidson3 and Bruce Reisch1, (1)Cornell University, Geneva, NY, (2)Cornell University, Ithaca, NY, P0876: Genome Mapping, Tagging & Characterization: Fruit Species - Even (3)USDA-ARS Grape Genetics Research Unit, Geneva, NY, (4)Crop Diseases, Application of Genotyping-By-Sequencing for Selection of Locus-Specific Pests and Genetics Research Unit, USDA-ARS, Parlier, CA, (5)University of BAC Clones to Construct Physical Maps and Identify Candidate Genes in Minnesota, St Paul, MN, (6)South Dakota State University, Brookings, SD, Vitis (7)Missouri State University, Mountain Grove, MO, (8)University of California 1 2 3 Davis, Davis, CA, (9)Institute for Genomic Diversity, Cornell University, Jacquelyn Ann Lillis , Craig A Ledbetter , Rajtilak Majumdar and Lance 3 Ithaca, NY Cadle-Davidson , (1)USDA-ARS, Geneva, NY, (2)Crop Diseases, Pests and Genetics Research Unit, USDA-ARS, Parlier, CA, (3)USDA-ARS Grape

Genetics Research Unit, Geneva, NY P0874: Genome Mapping, Tagging & Characterization: Fruit Species - Even

High-Density SNP-Based Genetic Map for Identification of Fruit Quality- P0877: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Related QTLs in Table Grape We Prefer Them Old: Epigenetic Control of Wine Quality in Response to Nilo Mejía, Nallatt Ocarez, Mauricio González, Bruno Defilippi and Eduardo Grapevine Age Torres, Instituto de Investigaciones Agropecuarias, Centro Regional La Platina, Santiago, Chile Carlos M Rodriguez Lopez, James M Breen, Roberta De Bei, Iain Searle and Cassandra Collins, University of Adelaide, Adelaide, Australia

P0878: Genome Mapping, Tagging & Characterization: Fruit Species - Even P0881: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Exploring Quantitative Trait Loci for Anthocyanin Content in The Advent of Precision Breeding: An Advanced Method of Plant Genetic Interspecific Hybrid Grape (Vitis labruscana " Vitis vinifera) Improvement and Its Utility for Vitis Spp Yusuke Ban1, Akifumi Azuma1, Nobuhito Mitani1, Takeshi Hayashi2, Akihiko Deborah Dean1, Dennis Gray2, Zhijian T Li3, Trudi Nadia Lavinia Grant3, Sato1, Atsushi Kono1 and Shozo Kobayashi1, (1)NARO Institute of Fruit Tree Sananand A Dhekney4 and Robert N Trigiano5, (1)Unifversity of Florida IFAS Science (NIFTS), Higashi-Hiroshima, Japan, (2)NARO Agricultural Research MREC, Apopka, FL, (2)University of Florida IFAS Mid-Florida Research and Center (NARC), Tsukuba, Japan education Center, Apopka, FL, (3)University of Florida IFAS MREC, Apopka, FL, (4)University of Wyoming Sheridan Research and Education Center, Sheridan, WY, (5)University of Tennessee Dept of Entomology and Plant P0879: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Pathology, Knoxville, TN Plastid DNA Sequence Diversity in Wild Grapevine Samples (Vitis vinifera subsp sylvestris) from the Caucasus Region: Complete Plastid Genome Sequences of Georgian Samples P0882: Genome Mapping, Tagging & Characterization: Fruit Species - Even Fast and Robust Generation of High-Resolution Genetic Maps in Ia Z Pipia, Agricultural University of Georgia, Tbilisi, Georgia Grapevine Interspecific Hybrid Half-Sib Families Using the HetMappS Pipeline and R/QTL P0880: Genome Mapping, Tagging & Characterization: Fruit Species - Even Paola Barba1, Katie Hyma2, Minghui Wang3, Jason Londo4, Charlotte Genome-Wide Prediction Methods in Highly Diverse and Heterozygous Acharya3, Sharon E Mitchell3, Qi Sun5, Bruce Reisch6 and Lance Cadle- Species: Proof-of-Concept through Simulation in Grapevine Davidson4, (1)Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, (2)Genomic Diversity Facility, Patrice This, INRA - UMR AGAP, Montpellier, France, Loïc Le Cunff, IFV, Cornell University, Ithaca, NY, (3)Cornell University, Ithaca, NY, (4)USDA- UMT Geno-Vigne®, Montpellier, France and Agota Fodor, INRA, UMR ARS Grape Genetics Research Unit, Geneva, NY, (5)Institute for Genomic AGAP, Montpellier, France Diversity, Cornell University, Ithaca, NY, (6)Cornell University, Geneva, NY

P0883: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Shotgun Proteome Analysis for Insight into Secondary Metabolite Production in Muscadine Grape Mehboob B Sheikh and Devaiah M Kambiranda, Florida A&M University, Tallahassee, FL

276 P0884: Genome Mapping, Tagging & Characterization: Fruit Species - Even P0888: Genome Mapping, Tagging & Characterization: Fruit Species - Even Comparative Mapping of the Muscadine Grape (Vitis rotundifolia) and the How to Use GDR, the Genome Database for Rosaceae

European Bunch Grape (V vinifera) Shows a High Level of Synteny 1 1 1 1 Between the Two Species Sook Jung , Stephen P Ficklin , Taein Lee , Chun-Huai Cheng , Anna Blenda2, Jing Yu1, Ping Zheng1, Sushan Ru1, Cameron Peace1, Katherine M Chris Owens, USDA-ARS, Geneva, NY Evans3, Nnadozie Oraguzie4, Lisa DeVetter1, Albert G Abbott5, Ksenija Gasic5, 6 1 Mercy Olmstead and Dorrie Main , (1)Washington State University, Pullman, WA, (2)Genetics and Biochemistry, Clemson University, Clemson, SC, P0885: Genome Mapping, Tagging & Characterization: Fruit Species - Odd (3)Washington State University, Wenatchee, WA, (4)Washington State Gene Expression Analysis of Rugose Wood Affected Autografts of University, Prosser, WA, (5)Clemson University, Clemson, SC, (6)University Grapevine Cultivar Refosk of Florida, Gainesville, FL

1 2 1 Matja# Hladnik , Jernej Jakse and Dunja Bandelj , (1)University of Primorska, Koper, Slovenia, (2)University of Ljubljana, Biotechnical Faculty, P0889: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Agronomy Department, Ljubljana, Slovenia Silencing of Grapevine Pectate Lyase-like Genes VvPLL2 and VvPLL3 Confers Resistance Against Erysiphe necator and Differentially Modulates Gene Expression P0886: Genome Mapping, Tagging & Characterization: Fruit Species - Even Analysis of Xylem Tissue and Xylem Sap Proteome Reveal Disease Rajtilak Majumdar1, Siraprapa Brooks1, Jacquelyn Lillis1, Michael V Osier2, Tolerance Mechanisms Among Grape Species Bruce Reisch3 and Lance Cadle-Davidson1, (1)USDA-ARS Grape Genetics Research Unit, Geneva, NY, (2)Rochester Institute of Technology, Rochester, 1 1 1 2 Varshini Sridhar , Ramesh Katam , Devaiah M Kambiranda , Joseph Bundy , NY, (3)Cornell University, Geneva, NY Sydney Lyda1, Kundai Chibanguza1 and Shelletta Tilghman1, (1)Florida A&M

University, Tallahassee, FL, (2)Florida State University, Tallahassee, FL P0890: Genome Mapping, Tagging & Characterization: Fruit Species - Even

Developing a Genetic Map for Tetraploid Roses Using Genotyping-By- P0887: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Sequencing QTL Identification in an Interspecific Grapevine Cross Segregating for Resistance to Powdery Mildew, Downy Mildew, Black Rot, and Phylloxera Travis Banks1, Michael Pautler1, Rumen Conev1 and Daryl J Somers2, (1)Vineland Research and Innovation Centre, Vineland Station, ON, Canada, 1 1 1 Soon Li Teh , Matthew D Clark , Peter Hemstad , Jonathan Fresnedo (2)Vineland Research and Innovation Centre, Vineland, ON, Canada Ramirez2, Qi Sun3, Lance Cadle-Davidson4, Adrian Hegeman1 and James J 1 Luby , (1)University of Minnesota, St Paul, MN, (2)Cornell University, Ithaca, NY, (3)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (4)USDA-ARS Grape Genetics Research Unit, Geneva, NY

P0891: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0894: Genome Mapping, Tagging & Characterization: Fruit Species - Even RosaR80: A New Framework for the Comparative Analysis of Disease Simulation of Genetic Gain from Marker-Assisted Seedling Selection for Resistance Genes in the Rosaceae - Apple, Peach, Strawberry Quantitative Trait Improvement in Rosaceae Tree Fruit Leon Van Eck, University of Minnesota, Saint Paul, MN and James M Sushan Ru1, Craig Hardner2, Patrick A Carter1, Katherine M Evans3, Dorrie Bradeen, University of Minnesota, St Paul, MN Main1 and Cameron Peace1, (1)Washington State University, Pullman, WA, (2)University of Queensland, Brisbane, Australia, (3)Washington State University, Wenatchee, WA P0892: Genome Mapping, Tagging & Characterization: Fruit Species - Even

Candidate Gene Expression Profiling Reveals a Time Specific Activation during Fruit Development and Ripening in Apple P0895: Genome Mapping, Tagging & Characterization: Fruit Species - Odd

1 2 2 1 Uncovering a Major Ma1 Associated Co-Expression Gene Network Alice Tadiello , Nicola Busatto , Brian Farneti , Riccardo Velasco , Guglielmo Governing Apple Fruit Acidity Costa2 and Fabrizio Costa1, (1)Fondazione E Mach, San Michele all'Adige, Italy, (2)University of Bologna, Bologna, Italy Yang Bai1, Laura Dougherty1, Lailiang Cheng2, Gan-Yuan Zhong3 and Kenong 1 Xu , (1)Horticulture Section, School of Integrative Plant Science, NYSAES,Cornell University, Geneva, NY, (2)Horticulture Section, School of P0893: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Integrative Plant Science, Cornell University, Ithaca, NY, (3)USDA-ARS Genome Wide Transcriptome Investigation of Fruit Development and GGRU, Geneva, NY Ripening in Apple Alice Tadiello1, Sara Longhi2, Nicola Busatto3, Brian Farneti3, Guglielmo P0896: Genome Mapping, Tagging & Characterization: Fruit Species - Even 3 4 1 1 Costa , Massimo Delledonne , Riccardo Velasco and Fabrizio Costa , Saturated Linkage Map Construction in Hongro X Alps Otome Pseudo (1)Fondazione E Mach, San Michele all'Adige, Italy, (2)CIBIO-University of Test Cross Population Using Genomics Trento, Mattarello (Trento), Italy, (3)University of Bologna, Bologna, Italy, (4)University of Verona, Verona, Italy YoungKeun Jun, Seung Hyun Ban and Cheol Choi, Kyungpook National University, Daegu, South Korea

277 P0897: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0900: Genome Mapping, Tagging & Characterization: Fruit Species - Even Using Early Flowering Transgenic Apple to Accelerate the Breeding of Fire Blight Resistant Pre-Breeding Apple Genotypes Developed Using the Donor Parents with Multiple Loci for Disease Resistance (Malus x Early Flowering Approach domestica) Melanie Jänsch1, Henryk Flachowsky2, Viola M Hanke2 and Andrea John L Norelli1, Michael E Wisniewski1, Henryk Flachowsky2 and Viola M Patocchi1, (1)Agroscope, Wädenswil, Switzerland, (2)Julius Kühn-Institut, Hanke2, (1)USDA-ARS, Kearneysville, WV, (2)Julius Kühn-Institut, Institute Institute for Breeding Research on Fruit Crops, Dresden, Germany for Breeding Research on Fruit Crops, Dresden, Germany P0901: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0898: Genome Mapping, Tagging & Characterization: Fruit Species - Even Genetic Characterization of Apple Accessions with Very Low Chilling cis and trans eQTLs Reveal the Location of Major Gene Expression Requirements in Israel Switches in Apple Rootstocks Taly Trainin, Matat Zohar, Danielle Mayer, Irit Bar-Yaakov, Kamel Khateeb, Gennaro Fazio, USDA, ARS/ Cornell University, Geneva, NY, Philip Jensen, Doron Holland and Tal Isaacson, Agricultural Research Organization, Ramat Department of Plant Pathology, University Park, PA, Angela M Baldo, USDA Yishay, Israel ARS DBNRRC, Stuttgart, AR and Timothy McNellis, Department of Plant Pathology and Environmental Microbiology, University Park, PA P0902: Genome Mapping, Tagging & Characterization: Fruit Species - Even

Genome-Wide Transcriptomic Analysis Correlated with Superficial Scald P0899: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Development in Granny Smith Apples (Malus X Domestica Borkh)

Characterization of Unique Plastid-Targeted Genes in Apple (Malus x 1 1 2 3 domestica) Nicola Busatto , Brian Farneti , Alice Tadiello , Massimo Delledonne , Guglielmo Costa1, Riccardo Velasco2 and Fabrizio Costa2, (1)University of Ryan W Christian1, Scott Schaeffer2 and Amit Dhingra2, (1)Washington State Bologna, Bologna, Italy, (2)Fondazione E Mach, San Michele all'Adige, Italy, University, Pullman, WA, (2)Department of Horticulture, Washington State (3)University of Verona, Verona, Italy University, Pullman, WA

P0903: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0906: Genome Mapping, Tagging & Characterization: Fruit Species - Even Target Metabolite and Gene Transcription Profiling during the Classification of Korean Native Pear By Using a Standard Set of Simple Development of Superficial Scald in Granny Smith Apple (Malus x Sequence Repeat Marker Alleles domestica Borkh) Seolah Kim1, Youngjae Oh1, Hyunsuk Shin1, Jungyeon Won1, Sewon Oh1, Nicola Busatto1, Brian Farneti1, Alice Tadiello2, Urska Vrhovsek2, Luca Yoon-Kyeong Kim2, Nahla Bassil3 and Daeil Kim1, (1)Chungbuk National Cappellin2, Franco Biasioli2, Riccardo Velasco2, Guglielmo Costa1 and University, Cheongju, South Korea, (2)National Institute of Horticultural & Fabrizio Costa2, (1)University of Bologna, Bologna, Italy, (2)Fondazione E Herbal Science, Naju, South Korea, (3)USDA/ARS, NCGR, Corvallis, OR Mach, San Michele all'Adige, Italy P0907: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0904: Genome Mapping, Tagging & Characterization: Fruit Species - Even Utility of Standard Microsatellite Markers for Identification of Asian Development of High-Throughput Indel Marker Based on Next Pears (Pyrus spp) Generation Sequencing in Korean Pears (Pyrus spp) Jungyeon Won1, Youngjae Oh1, Seolah Kim1, Hyunsuk Shin1, Sewon Oh1, Jungyeon Won1, Youngjae Oh1, Seolah Kim1, Hyunsuk Shin1, Sewon Oh1, Yoon-Kyeong Kim2, Nahla Bassil3 and Daeil Kim1, (1)Chungbuk National Yoon-Kyeong Kim2 and Daeil Kim1, (1)Chungbuk National University, University, Cheongju, South Korea, (2)National Institute of Horticultural & Cheongju, South Korea, (2)National Institute of Horticultural & Herbal Herbal Science, Naju, South Korea, (3)USDA/ARS, NCGR, Corvallis, OR Science, Naju, South Korea P0908: Genome Mapping, Tagging & Characterization: Fruit Species - Even P0905: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Genome-Wide Analysis of Monosaccharide Transporter (MST) Family Modes of Gene Duplication and Gene Family Expansion and Evolution in Genes in Pear Chinese White Pear Jiaming Li1, Shaoling Zhang2 and Jun Wu2, (1)Nanjing Agricultural Xin Qiao, Lei-Ting Li, Shaoling Zhang, Jun Wu and Juyou Wu, Nanjing Unviersity, Jiang su Provinceï*ŒNanjing city, China, (2)Nanjing Agricultural Agricultural University, Nanjing, China University, Nanjing, China

278 P0909: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0912: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Tanscriptome Analysis of Pear Fruit Development Revealing Different Correlation Between Alkanes and Cracking in Different Sweet Cherries Gene Expression Pattern of Cultivated Species Varieties Mingyue Zhang1, Cheng Xue2, Zhangjun Fei3, Shaoling Zhang2 and Jun Wu2, Herman Silva1, Gisselle Poblete1, Francisco Robledo1, Jonathan Maldonado1, (1)Nanjing Agricultural University & Cornell University, Nanjing, China, Juan Carlos Rios1, Lukas Schreiber2, Viktoria Zeisler2, Amit Dhingra3 and (2)Nanjing Agricultural University, Nanjing, China, (3)Cornell University, Basilio Carrasco4, (1)Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Ithaca, NY Chile, Santiago, Chile, (2)Institute of Cellular and Molecular Botany, Department of Ecophysiology, University of Bonn, Bonn, Germany, (3)Department of Horticulture, Washington State University, Pullman, WA, P0910: Genome Mapping, Tagging & Characterization: Fruit Species - Even (4)Pontificia Universidad Católica de Chile, Santiago, Chile Genome-Wide Survey, Identification and Evolution Analysis of Aldo-Keto Reductase (AKR) Genes in Pear and Other Members in Rosaceae P0913: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Lei-Ting Li, Jun Wu, Xin Qiao and Shaoling Zhang, Nanjing Agricultural Refining the Genomic Region Containing a Major Locus Controlling Fruit University, Nanjing, China Maturity in Peach

Hanny Elsadr, University of Guelph, Guelph, ON, Canada, Travis Banks, P0911: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Vineland Research and Innovation Centre, Vineland Station, ON, Canada, Genomic Characterization, Phylogenetic Comparison and Differential Daryl J Somers, Vineland Research and Innovation Centre, Vineland, ON, Expression of the Cyclic Nucleotide-Gated Channels Gene Family in Pear Canada and Jayasankar Subramanian, University of Guelph/Vineland Station, (Pyrus bretchneideri Rehd) Vineland, ON, Canada

Jianqing Chen, Nanjing Agricultural University, Nanjing, TN, China P0914: Genome Mapping, Tagging & Characterization: Fruit Species - Even

Association Mapping Analysis for Chemical and Physical Traits in Almond Carolina Font i Forcada1, Rafael Socias i Company2 and Angel Fernandez i Marti1, (1)Genome Center, University of California, Davis, CA, (2)CITA Aragon, Zaragoza, Spain

P0915: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0918: Genome Mapping, Tagging & Characterization: Fruit Species - Even Marker Assisted Introgression: A Fast Approach to Assess the Value of Candidate Genes for Metabolite Profiling of Strawberry NIL Collection Almond Genes and Integrate them in the Peach Genetic Background Amparo Monfort, IRTA, Centre for Research in Agricultural Genomics CSIC- Pere Arús1, Octavio Serra2, José M Donoso3, Iban Eduardo1, Werner Howad1 IRTA-UAB-UB, Bellaterra (Barcelona), Spain, Maria Urrutia, Center for and Maria Jose Aranzana1, (1)IRTA, Bellaterra, Spain, (2)CRAG, Bellaterra, Resarch in Agricultural Genomics CSIC-IRTA-UAB-UB, Bellaterra Spain, (3)INIA, Rengo, Chile (Cerdanyola del Vallès), Spain, Wilfried Schwab, Technische Universität München, Freising, Germany and Thomas Hoffmann, Technische Universität München,, Freising, Germany P0916: Genome Mapping, Tagging & Characterization: Fruit Species - Even

Genetic Dissection of Complex Fruit Quantitative Traits in Peach Progenies P0919: Genome Mapping, Tagging & Characterization: Fruit Species - Odd

1 1 1 Development and Analysis of a Reference Transcriptome of Cultivated Igor Pacheco Cruz , Angelo Ciacciulli , Cassia Da Silva-Linge , Stefano Strawberry Gattolin2, Cinzia Colombi2, Stefano Foschi3, Martina Lama4, Laura Rossini5 and Daniele Bassi6, (1)UNIMI, Dipartimento di Scienze Agrarie e Ambientali José F Sánchez-Sevilla1, José G Vallarino2, Iraida Amaya1, Sonia Osorio2, (DiSAA), Milan, Italy, (2)Parco Tecnologico Padano, Lodi, Italy, (3)CRPV soc Miguel A Botella2 and Victoriano Valpuesta2, (1)IFAPA - Breeding and coop, Cesena, Italy, (4)ASTRA Innovazione e Sviluppo SRL, Faenza, Italy, Biotechnology, Malaga, Spain, (2)IHSM-University of Málaga-CSIC, Málaga, (5)Universty of Milan - DiSAA, Milano, Italy, (6)University of Milano, Spain Milano, Italy P0920: Genome Mapping, Tagging & Characterization: Fruit Species - Even P0917: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Diversity Analysis and Genetic Mapping in Octoploid Strawberry Methylation of the Sf Locus in Almond Is Associated with S-RNase Loss of (Strawberry " ananassa) Based on DArT Marker Platforms Function José F Sánchez-Sevilla, IFAPA - Breeding and Biotechnology, Málaga, Spain, Angel Fernandez i Marti, Genome Center, University of California, Davis, Aniko Horvath, INRA, Bordeaux, France, Andrzej Kilian, Diversity Arrays CA, Thomas M Gradziel, University of California, Davis, CA and Rafael Technology Pty Ltd (DArT PL), Canberra, Australia, Béatrice Denoyes, INRA Socias i Company, CITA Aragon, Zaragoza, Spain UMR 1332 - France, Villenave d'Ornon cedex, France and Iraida Amaya, IFAPA - Breeding and Biotechnology, Malaga, Spain

279 P0921: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0924: Genome Mapping, Tagging & Characterization: Fruit Species - Even Mutants of a Diploid Strawberry, Fragaria vesca, for Understanding Meta-Analysis and Gene Co-Expression Network Analysis of Citrus-HLB Developmental Processes and Physiological Responses Transcriptome Datasets Identify Candidate Citrus Genes for Engineering HLB Resistance Janet P Slovin, USDA/ARS Genetic Improvement of Fruit and Vegetables Lab, Beltsville, MD Nidhi Rawat1, Zhanao Deng1, Fred G Gmitter2 and Dongliang Du2, (1)University of Florida, Wimauma, FL, (2)University of Florida, IFAS-CREC, Lake Alfred, FL P0922: Genome Mapping, Tagging & Characterization: Fruit Species - Even

Annotation of Tissue-Specific Transcriptome Data from Rabbiteye Blueberry (Vaccinium virgatum) P0925: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Toward Genomic Selection in Blueberry Timothy A Rinehart, USDA-ARS Southern Horticultural Laboratory, Poplarville, MS and Ann Loraine, University of North Carolina Charlotte, James Olmstead1, Catherine Cellon1, Rodrigo Amadeu1 and Patricio R Charlotte, NC Munoz2, (1)University of Florida, Gainesville, FL, (2)University of Florida - Agronomy Department, Gainesville, FL P0923: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Black Raspberry Genomic and Genetic Resource Development to Enable P0926: Genome Mapping, Tagging & Characterization: Fruit Species - Even Cultivar Improvement Full-Length LTR Retrotransposons in the Genome of Citrus ! Clementina Jill M Bushakra1, Nahla Bassil1, Doug Bryant2, Todd C Mockler2, Michael Dongliang Du, Xiaoyun Du, Yanbo Wang and Fred G Gmitter, University of Dossett3, Barbara Gilmore4, Mary Peterson5, Christine Bradish6, Gina Florida, IFAS-CREC, Lake Alfred, FL 7 8 5 Fernandez , Jungmin Lee and Chad Finn , (1)USDA/ARS, NCGR, Corvallis, OR, (2)Donald Danforth Plant Science Center, Saint Louis, MO, (3)Agriculture and Agri-Food Canada, Agassiz, BC, Canada, (4)USDA-ARS, Corvallis, OR, P0927: Genome Mapping, Tagging & Characterization: Fruit Species - Odd (5)USDA-Agricultural Research Service, Corvallis, OR, (6)North Carolina Genomic Structure and Evolution of the Citrus Tristeza Virus (CTV) State University, Raleigh, NC, (7)NCSU, Raleigh, NC, (8)USDA-ARS, Parma, Resistance Locus in Poncirus and Citrus ID Nidhi Rawat1, Zhanao Deng1 and Fred G Gmitter2, (1)University of Florida,

Wimauma, FL, (2)University of Florida, IFAS-CREC, Lake Alfred, FL

P0928: Genome Mapping, Tagging & Characterization: Fruit Species - Even P0931: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Abiotic Stress and Hormonal Responses of a Promoter of Citrus Transcriptome Profile Analysis of Citrus Canker-Resistance Tangerine Carotenoid Isomerase Gene in Transgenic Arabidopsis Ponkan (Citrus reticulata) Compared to Citrus Canker-Susceptible Sweet Orange Bahia (Citrus sinensis) In-Jung Kim1, Chang-Ho Eun2 and Seong-U Kim1, (1)Faculty of Biotechnology, Jeju National University, Jeju-si, Jeju Special Self-Governing Gustavo de Carvalho Peron1, Mayara Mari Murata1, Teresa D C G Cofre1, Province, South Korea, (2)Subtropical Horticulture Research Institute, Jeju Juliana da Silva Cavallini1, Roberto H Herai2, Adriano Ferrasa3, Renata Izabel National University, Jeju-si, Jeju Special Self-Governing Province, South Dozzi Tezza4, Maria Ines T Ferro5, José Belasque Jr6 and Jesus Aparecido Korea Ferro5, (1)UNESP/FCAV - Depto deTecnologia, Jaboticabal, Brazil, (2)UCSD – Univ of California San Diego, San Diego, CA, (3)Universidade Estadual de Ponta Grossa - Depto de Informática, Ponta Grossa, Brazil, (4)FCAV/UNESP - P0929: Genome Mapping, Tagging & Characterization: Fruit Species - Odd CREBIO, Jaboticabal, Brazil, (5)UNESP/FCAV - Depto de Tecnologia, Exploiting the Citrus Genome Towards Understanding Genetic Traits Jaboticabal, Brazil, (6)ESALQ/USP - Depto de Fitopatologia e Nematologia, Related to Fruit Quality and Disease Resistance Piracicaba, Brazil

1 2 1 Marco A Takita , Maiara Curtolo , Mariangela Cristofani-Yaly , Daniel Bedo Assumpção Castro3, Leonardo P Boava1, Evandro Henrique Schinor1, Marinês P0932: Genome Mapping, Tagging & Characterization: Fruit Species - Odd 1 1 1 Bastianel , Valdenice Moreira Novelli and Marcos Antonio Machado , Fine Mapping of Short Hypocotyl Locus in Semi-Wild Xishuangbanna (1)Centro de Citricultura Sylvio Moreira, IAC, Cordeiropolis, SP, Brazil, Cucumber (2)Centro de Energia Nuclear na Agricultura - USP, Piracicaba, SP, Brazil, (3)CBMEG, State University of Campinas, Campinas, Brazil Kailiang Bo, University of Wisconsin - Madison, Madison, WI

P0930: Genome Mapping, Tagging & Characterization: Fruit Species - Even P0933: Genome Mapping, Tagging & Characterization: Fruit Species - Odd A Dexamethasone-Inducible Gene Expression System Is Active in Citrus Identification of Genic SSR and SNP By Leaf Transcriptome Sequencing Plant of Mango (Mangifera indica L) Varieties Neelam and Dushehari Pascale Rossignol1, Vladimir Orbovic2, Tengbo Huang3, Christopher L Ajay Kumar Mahato1, Nimisha Sharma2, A K Singh2, Akshay Singh1, S K Dupont4 and Vivian F Irish3, (1)Current Address J Craig Venter Institute, La Singh2, Jai Prakash2, Manish Srivastava2, Kishore Gaikwad1, T R Sharma1 and Jolla, CA, (2)Citrus Research and Education Center, Lake Alfred, FL, (3)Yale N K Singh1, (1)National Research Centre on Plant Biotechnology, New Delhi, University, New Haven, CT, (4)J Craig Venter Institute, La Jolla, CA India, (2)Fruits and Horticultural Technology, New Delhi, India

280 P0934: Genome Mapping, Tagging & Characterization: Fruit Species - Even P0938: Genome Mapping, Tagging & Characterization: Fruit Species - Even Identification of Homologous Chromosomes Revealed Evolution at Single- Efficient Genetic Mapping and QTL Analysis in Watermelon

Copy Gene Loci in Cucumis "hytivus Chen and Kirkbride, a Nascent 1 1 2 1 Allotetraploid Cucumis Species Sun-Ju Rhee , Yun-Jung Jang , Bal-Kum Han , Yeon-Ju Koh and Gung-Pyo Lee2, (1)Chung-Ang University, Ansung, South Korea, (2)Dept of Integrative Yunzhu Wang, Nanjing Agricultural University, Nanjing, China Plant Science, Chung-Ang University, Ansung, South Korea

P0935: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0939: Genome Mapping, Tagging & Characterization: Fruit Species - Odd QTL Mapping of Parthenocarpy in Gynoecious Cucumber and Evaluation Functional Analysis of Drought-Induced Transcriptional Regulatory of a Marker Linked to a Major QTL Factor CLMYB1 in the Roots of Wild Watermelon Zhe Wu and Ying Deng, Nanjing Agricultural University, Nanjing, China Atsushi Kato1, Masataka Kajikawa2, Yoshihiko Nanasato1, Hisashi 3 4 5 Tsujimoto , Akiho Yokota and Kinya Akashi , (1)Tottori University, Tottori, Japan, (2)Kyoto University, Kyoto, Japan, (3)Arid Land Research Center, P0936: Genome Mapping, Tagging & Characterization: Fruit Species - Even Tottori Univerisity, Tottori, Japan, (4)nara institute of science and technology, Analysis of Differentially Expressed Genes in Cucumber Interspecific Ikoma, Japan, (5)Tottori University, tottori, Japan Introgression Line with Resistance to Downy Mildew Chunyan Cheng1, Xin Pang1, Xuejiao Liu1, Ji Li1, Qunfeng Lou1 and Jinfeng P0940: Genome Mapping, Tagging & Characterization: Fruit Species - Even 2 Chen , (1)Nanjing Agricultural University, Nanjing, China, (2)Nanjing High Quality Plant Genome Assembly Using PacBio Long Read Whole Agricultural University, Nanjing, Jiangsu, China Genome Sequencing and Short Read Whole Genome Profiling (WGPTM) - Melon P0937: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Michiel de Both, Nathalie J van Orsouw, Jan van Oeveren, Jifeng Tang, Genetic and Transcriptomic Analysis of Age Related Resistance to Dennis Woltinge, Rui Peng Wang, Erwin Datema, Antoine Janssen, Edwin van Phytophthora capsici in Developing Cucumber Fruit der Vossen and Michiel van Eijk, KeyGene, Wageningen, Netherlands

Rebecca Grumet, Ben Mansfeld and Marivi Colle, Michigan State University, East Lansing, MI

P0941: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0944: Genome Mapping, Tagging & Characterization: Fruit Species - Even Identification of Candidate Resistance Genes against Squash leaf curl Managing Banana Genetic Resources and Genomic Information with the Philippine virus in Pumpkin (Cucurbita moschata) by Bulked Segregant Triplet Drupal/Tripal/Chado Analysis and Massive Analysis of cDNA Ends Valentin Guignon1, Max Ruas2, Gaëtan Droc3, Alexis Dereeper4, Julie Roland Schafleitner1, Chung-cheng Lin2, Bjorn Rotter3, Jean-yu Lin1, Jin-teh Sardos5, Yann Hueber5, Jean-François Dufayard6, Nicolas Roux5 and Mathieu Wang1, Shin-jiun Cherng1, Lawrence Kenyon1, Narinder Dhillon4 and Wen-shi Rouard5, (1)Bioversity International, Commodity Systems & Genetic Tsai5, (1)AVRDC - The World Vegetable Center, Tainan, Taiwan, (2)Kaiping Resources, F-34397 Montpellier, France, (2)Bioversity International, Clover Seed Company Limited, Kaiping City, China, (3)GenXPro-GmbH, Montferrier-sur-Lez, France, (3)CIRAD, UMR AGAP, Montpellier, France, Frankfurt am Main, Germany, (4)AVRDC - Regional Office for East and (4)IRD, UMR RPB, F-34394 Montpellier, France, (5)Bioversity International, Southeast Asia, Nakhon Pathom, Taiwan, (5)National Chiayi University, Montpellier, France, (6)CIRAD - UMR AGAP, Montpellier, France Chiayi City, Taiwan P0945: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0942: Genome Mapping, Tagging & Characterization: Fruit Species - Even Microsatellite Marker Development for Genes Related to Defense Banana Genome Contributes to Understand Grass Chromosome Number Responses in Musa acuminata Reduction and Genome Repatterning Mechanism Robert N G Miller1, Flavia L Emediato1, Roberto C Togawa2 and Orzenil Xiyin Wang, Plant Genome Mapping Laboratory, University of Georgia, Bonfim Silva-Junior3, (1)Universidade de Brasília, Brasília, Brazil, (2)Embrapa Athens, GA Genetic Resources and Biotechnology, Brasília, Brazil, (3)EMBRAPA Gen Res Biotech & Catholic University Brasilia, Brasilia, Brazil P0943: Genome Mapping, Tagging & Characterization: Fruit Species - Odd Identification and Genetic Mapping of a Dominant Gene for Resistance to P0946: Genome Mapping, Tagging & Characterization: Fruit Species - Even Powdery Mildew in Squash (Cucurbita pepo) Identification of Genomic Region Associated with Female Date Palm through SCAR Markers Guoyu Zhang, Haizhen Li, Fan Zhang, Ligang Jiang and Zhangcai Jia, Beijing Vegetable Research Center, Beijing Academy of Agricultural and Forestry Madhia Habib1, Faisal Saeed Awan2, Bushra Sadia1, Muhammad Anjum Zia2, Sciences, Beijing, China Jasia Anjum1 and Azeem Iqbal Khan2, (1)CABB, University of Agriculture Faisalabad, Faisalabad, Pakistan, (2)University of Agriculture Faisalabad, Faisalabad, Pakistan

281 P0947: Genome Mapping, Tagging & Characterization: Fruit Species - Odd P0950: Genome Mapping, Tagging & Characterization: Sunflower/Oilseeds - National Date Palm Germplasm Repository (Phoenix dactylifra L) Even Reference Genome of Sunflower, Line HA412, Version 14: A Domesticated Robert R Krueger, USDA-ARS National Clonal Germplasm Repository for Compilospecies Citrus & Dates, Riverside, CA 1 1 1 2 Christopher J Grassa , Gregory J Baute , Brook Moyers , Gregory L Owens , Nolan Kane3, Nicolas Langlade4, Jérôme Gouzy4, Navdeep Gill1, S Evan P0948: Genome Mapping, Tagging & Characterization: Fruit Species - Even Staton1, Thuy N Nguyen1, Sariel Hubner1, John E Bowers5, Nadia I Chaidir1, Impact of Transposable Elements on the Evolution of Coffea arabica Hélène Bergès6, Matthew King7, Zhao Lai8, Eleni Bachlava9, Steve Knapp9, (Rubiaceae) John M Burke5, Patrick Vincourt4 and Loren H Rieseberg1, (1)University of British Columbia, Vancouver, BC, Canada, (2)Botany - University of British 1 2 2 2 Elaine S Dias , Serge Hamon , Perla Hamon , Romain Guyot , Alexandre de Columbia, Vancouver, BC, Canada, (3)University of Colorado, Boulder, CO, 2 1 Kochko and Claudia Carareto , (1)UNESP - Universidade Estatual Paulista, (4)INRA LIPM, Castanet-Tolosan, France, (5)Department of Plant Biology, São José do Rio Preto, SP, Brazil, (2)IRD UMR DIADE, Montpellier cedex 5, University of Georgia, Athens, GA, (6)INRA - CNRGV, Castanet Tolosan, France France, (7)DuPont Pioneer, Johnston, IA, (8)Department of Biology, Indiana University, Bloomington, IN, (9)Monsanto Company, Woodland, CA P0949: Genome Mapping, Tagging & Characterization: Sunflower/Oilseeds - Odd P0951: Genome Mapping, Tagging & Characterization: Sunflower/Oilseeds - Deciphering the Genetic Basis of Solar Tracking By Genome-Wide Odd Association Mapping in Sunflower Population Genomics of the Serpentine Sunflower, Helianthus bolanderi Using GBS Srinidhi V Holalu, Austin G Garner, Lucas P Henry and Benjamin K Blackman, University of Virginia, Charlottesville, VA Gregory L Owens, Botany - University of British Columbia, Vancouver, BC, Canada and Loren H Rieseberg, University of British Columbia, Vancouver, BC, Canada

P0952: Genome Mapping, Tagging & Characterization: Sunflower/Oilseeds - Even Using Genotyping-By-Sequencing to Identify Adaptive Genomic Regions in Wild Sunflower Edward V McAssey and John M Burke, Department of Plant Biology, University of Georgia, Athens, GA

P0953: Genome Mapping, Tagging & Characterization: Cotton - Odd P0956: Genome Mapping, Tagging & Characterization: Cotton - Even CottonGen: The Community Database for Cotton Genomics, Genetics and Gene-Associated Interspecific SNPs for Cotton (Gossypium hirsutum L) Breeding Research Introgression, Genetic Dissection and Breeding Jing Yu1, Sook Jung1, Chun-Huai Cheng1, Stephen P Ficklin1, Taein Lee1, Ping Amanda M Hulse-Kemp1, Hamid Ashrafi2, Xiuting Zheng1, Fei Wang1, Zheng1, Don C Jones2, Richard G Percy3 and Dorrie Main1, (1)Washington Kevin A Hoegenauer1, Andrea BV Maeda1, Sam Yang3, Kevin Stoffel2, Marta State University, Pullman, WA, (2)Cotton Incorporated, Cary, NC, (3)USDA- Matvienko4, Kimberly Clemons5, Joshua A Udall5, Allen Van Deynze2, Don C ARS, Southern Plains Agricultural Research Center, College Station, TX Jones6 and David M Stelly1, (1)Texas A&M University, College Station, TX, (2)Seed Biotechnology Center, University of California, Davis, CA, (3)Monsanto Company, Chesterfield, MO, (4)CLC bio, Davis, CA, (5)Brigham P0954: Genome Mapping, Tagging & Characterization: Cotton - Even Young University, Provo, UT, (6)Cotton Incorporated, Cary, NC Whole Genome Sequencing and Analysis of the 'A' Genome of Indian Diploid Cottons Gossypium arboreum and Gossypium herbaceum P0957: Genome Mapping, Tagging & Characterization: Cotton - Odd 1 2 2 Ishwarappa S Katageri , V B Reddy Lachagari , Malarvizhi A , Milner QTLs for Fuzzless Trait in Cotton Kumar M2, Ravi Gupta2, Sivarama Prasad Lekkala2, Boney Kuriakose2, Arjula R Reddy3, George Thomas4, Sam Santhosh2, Vamadevaiah HM1, Khadi BM1 Adem Bardak1, Yuksel Bolek1, Halil Tekerek2 and Hamdullah Korhan2, and Biradar DP1, (1)University of Agricultural Sciences Dharwad, Dharwad, (1)Kahramanmaras Sutcu Imam University, Faculty of Agriculture, Department India, (2)SciGenom Labs Pvt Ltd, Kochi, India, (3)University of Hyderabad, of Agricultural Biotechnology, Kahramanmaras, Turkey, (2)Kahramanmaras Hyderabad, India, (4)SciGenom Research Foundation, Cheruthuruthy, India Sutcu Imam University, Graduate School of Natural and Applied Sciences, Kahramanmaras, Turkey P0955: Genome Mapping, Tagging & Characterization: Cotton - Odd Detection of Large-Scale Single Nucleotide Polymorphisms (SNP) Using P0958: Genome Mapping, Tagging & Characterization: Cotton - Even Genotyping-by-Sequencing in Upland Cotton (Gossypium hirsutum L) Towards Integrative Cyto-Genomics of the c12/c26 Homeologous Chromosome Pair of Cotton Md Sariful Islam1, Gregory Thyssen2, Johnie N Jenkins3 and David D Fang2, (1)Cotton Fiber BioSciences Unit, USDA-ARS-SRRC, New Orleans, LA, Bo Liu, Amanda M Hulse-Kemp and David Stelly, Texas A&M University, (2)Cotton Fiber Biosciences Unit, USDA-ARS-SRRC, New Orleans, LA, College Station, TX (3)USDA-ARS, Mississippi State, MS P0959: Genome Mapping, Tagging & Characterization: Cotton - Odd DNA Methylation Dynamics during Fiber and Ovule Development Qingxin Song, UT Austin, Austin, TX

282 P0960: Genome Mapping, Tagging & Characterization: Cotton - Even P0964: Genome Mapping, Tagging & Characterization: Cotton - Even

RNA-Seq Analysis of Short Fiber Mutants Ligon-Lintless-1 (Li1) and - 2 The Molecular Mechanisms of Plant Polyploidization Revealed By Systems (Li2) Revealed Important Role of Aquaporins in Cotton (Gossypium Analysis of the Genomes and Transcriptomes of Wheat, Cotton and hirsutum L) Fiber Elongation Related Species

Marina Naoumkina1, Gregory Thyssen1 and David D Fang2, (1)Cotton Fiber Yang Zhang1, Yun-Hua Liu1, Meiping Zhang1, Qijun Zhang2, Steven S Xu3, Biosciences Unit, USDA-ARS-SRRC, New Orleans, LA, (2)Crop Genetics Wayne Smith1, Steve Hague1, James Frelichowski4 and Hong-Bin Zhang1, Research Unit, USDA ARS, Stoneville, MS (1)Texas A&M University, College Station, TX, (2)North Dakota State University, Fargo, ND, (3)USDA-ARS, Fargo, ND, (4)USDA-ARS, College Station, TX P0961: Genome Mapping, Tagging & Characterization: Cotton - Odd

Distribution of Fiber Genes in Cultivated and Non-Cultivated Cotton Genomes P0965: Genome Mapping, Tagging & Characterization: Cotton - Odd

1 2 3 1 1 Towards Understanding the Genome of Diploid Cotton, Gossypium John Z Yu , Zhanyou Xu , Jing Yu , Russell J Kohel , Richard G Percy , herbaceum Using Deep Sequencing William D Beavis2 and Dorrie Main3, (1)USDA-ARS, Southern Plains Agricultural Research Center, College Station, TX, (2)Iowa State University, Venkateswara R Sripathi1, Seloame T Nyaku1, Fares Z Najar2, Bruce A Roe2, Ames, IA, (3)Washington State University, Pullman, WA Ramesh Buyyarapu3, Jane Grimwood4, David M Stelly5, Lloyd T Walker1 and 1 Govind C Sharma , (1)Alabama A&M University, Normal, AL, (2)The University of Oklahoma, Norman, OK, (3)Dow AgroSciences, Indianapolis, P0962: Genome Mapping, Tagging & Characterization: Cotton - Even IN, (4)HudsonAlpha Institute for Biotechnology, Huntsville, AL, (5)Texas Next Generation Genetic Mapping of the Ligon-Lintless-2 (Li2) Locus in A&M University, College Station, TX Upland Cotton Gregory Thyssen1, David D Fang1, Rickie B Turley2 and Marina Naoumkina1, P0966: Genome Mapping, Tagging & Characterization: Cotton - Even (1)Cotton Fiber Biosciences Unit, USDA-ARS-SRRC, New Orleans, LA, Transcriptome Analysis of Gossypium hirsutum Flower Buds Infested by (2)USDA-ARS, Stoneville, MS Cotton Boll Weevil (Anthonomus grandis) Larvae

Márcio Alves-Ferreira1, Sinara Artico1, Maria Fatima Grossi-de-Sa2, P0963: Genome Mapping, Tagging & Characterization: Cotton - Odd Osmundo Brilhante2, Leonardo Lima Pepino Macedo3, Marcelo Ribeiro- The Effect of Promoter Region Indels on Expression Bias in Polyploid Alves4, Adriana Pinheiro Martinelli5 and Sylvia Silveira5, (1)Universidade Cotton Species Federal do Rio de Janeiro, Rio de Janeiro, Brazil, (2)Embrapa Genetic Resources and Biotechnology, Brasilia, Brazil, (3)Universidade Católica, Zach S Liechty, Brigham Young University, Provo, UT Brasilia, Brazil, (4)Oswaldo Cruz Foundation, Rio de Janeiro, Brazil, (5)Universidade de São Paulo, Piracicaba, Brazil

P0967: Genome Mapping, Tagging & Characterization: Forest Trees - Odd P0970: Genome Mapping, Tagging & Characterization: Forest Trees - Even Pop's Pipes: Poplar Gene Expression Data Analysis Pipelines Implementation of MAS in Canada's Forests: Institutional and Political Challenges Hairong Wei1, Chathura Gunasekara1, Xiang Li2 and Yufeng Guo1, (1)Michigan Technological University, Houghton, MI, (2)Michigan Véronique Maltais1, Nancy Gélinas1 and Chelsea Nilausen2, (1)Université Technological Unviersity, Houghton, MI Laval, Québec, QC, Canada, (2)University of British Columbia, Vancouver, BC, Canada P0968: Genome Mapping, Tagging & Characterization: Forest Trees - Even The Oxford Nanopore Minion: A Tool for Combatting Illegal Logging of P0971: Genome Mapping, Tagging & Characterization: Forest Trees - Odd White Oaks? Silver Birch - A Model for Tree Genetics? Tara N Jennings1, Richard Cronn2, Brandon Burgess1, Sanjuro Jogdeo1, Aaron Sitaram Rajaraman and Jarkko T Salojärvi, University of Helsinki, Helsinki, Liston1, Kevin Weitemier1 and Bradley Kinder3, (1)Oregon State University, Finland Corvallis, OR, (2)USDA Forest Service Pacific Northwest Research Station, Corvallis, OR, (3)USDA Forest Service, Washington, DC P0972: Genome Mapping, Tagging & Characterization: Forest Trees - Even

The Manuka Genome Project P0969: Genome Mapping, Tagging & Characterization: Forest Trees - Odd 1 1 1 Genomic Resources for North American Hardwoods Amali H Thrimawithana , Ross N Crowhurst , Elena Hilario , Bruce Smallfield2, Cecilia H Deng1, David Chagne3, David Lewis4, Ed Morgan4, John E Carlson1, Margaret Staton2, Teodora Orendovici-Best1, Nicole Hanh Ngo4, Helge Dzierzon4, John Van Klink5, Kevin Davies4, Murray Boase4, Zembower1, Thomas Lane2, Jack Davitt2, Tatyana Zhebentyayeva3, Di Wu1, Nigel Perry5, Ross Bicknell2 and Kathy Schwinn4, (1)The New Zealand Daniela Moses4, Mark Coggeshall5, Oliver Gailing6, Sandra Owusu6, Sudhir Institute for Plant & Food Research Limited, Auckland, New Zealand, (2)The Khodwekar6, Haiying Liang3, Jeanne Romero-Severson7, Christopher A Saski8, New Zealand Institute for Plant & Food Research Limited, Lincoln, New Scott Schlarbaum9, Ketia Shumaker10, Stephan Schuster4 and Nicholas Zealand, (3)Plant and Food Research, Palmerston North, New Zealand, (4)The Wheeler11, (1)Pennsylvania State University, University Park, PA, New Zealand Institute for Plant & Food Research Limited, Palmerston North, (2)University of Tennessee Institute of Agriculture, Knoxville, TN, (3)Clemson New Zealand, (5)The New Zealand Institute for Plant & Food Research University, Clemson, SC, (4)Nanyang Technological University, Singapore, Limited, Dunedin, New Zealand Singapore, (5)University of Missouri, Columbia, MO, (6)Michigan Technological University, Houghton, MI, (7)University of Notre Dame, Notre Dame, IN, (8)Clemson University Genomics Institute, Clemson, SC, (9)University of Tennessee, Knoxville, TN, (10)The University of West Alabama, Livingston, AL, (11)Pennsylvania State University, Centralia, WA

283 P0973: Genome Mapping, Tagging & Characterization: Forest Trees - Odd P0976: Genome Mapping, Tagging & Characterization: Forest Trees - Even Functional Annotation of the Central Circadian Clock Components in Exploiting Genome Variation to Improve Next-Generation Sequencing Eucalyptus and Populus Data Analysis and CRISPR gRNA Design in Populus tremula x alba 717- 1B4 Colan G Balkwill1, Eshchar Mizrachi2 and Zander Myburg1, (1)University of Pretoria, Pretoria, South Africa, (2)Department of Genetics, University of Liang-Jiao Xue, Mohammad Mohebbi, Patrick Breen, Xi Gu, Magdy S Pretoria, Pretoria, South Africa Alabady, Scott A Harding and Chung-Jui Tsai, University of Georgia, Athens, GA P0974: Genome Mapping, Tagging & Characterization: Forest Trees - Even Identification of Novel and Known miRNAs and Their Targets in Pinus P0977: Genome Mapping, Tagging & Characterization: Forest Trees - Odd spp and Eucalyptus globulus SNP Discovery of Nine Drought-Responsive Genes in Genus Populus and

1 2 3 4 Development of SNP Genotyping Assays By TaqMan Probe-Based Real- Victor Carocha , Ana Carvalho , Clara S Graça , Susana Pera , Grégoire Le Time PCR Provost5 and Jorge A P Paiva3, (1)ITQB-UNL, Oeiras - Port, Portugal, (2)Institute for Biotechnology and Bioengineering, Centre of Genomics and Yong-Yul Kim1, Aru-Na Jo1, Ji-Min Park2 and Kyu-Suk Kang2, (1)Korea Biotechnology (IBB/CGB), Vila Real, Portugal, (3)Instituto de Biologia Forest Seed and Variety Center, Choongju, South Korea, (2)Seoul National Experimental e Tecnologica, Oeiras, Portugal, (4)Instituto de Investigação University, Seoul, South Korea Científica Tropical, Lisboa, Portugal, (5)UMR 1202 BIOGECO - INRA / Université Bordeaux 1, Site de Recherches Forêt Bois de Pierroton, Cestas, France P0978: Genome Mapping, Tagging & Characterization: Forest Trees - Even Using Rnaseq to Identify Candidate Effectors in the Septoria Canker- Poplar Pathosystem P0975: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Activation Tagging in Poplar for Gene Function Discovery Kelsey L Dunnell, Jonathan Richards, Robert S Brueggeman and Jared M LeBoldus, Department of Plant Pathology, North Dakota State University, Gervais Pelletier, Natural Resources Canada / Canadian Forest Service, Fargo, ND Quebec, QC, Canada

P0979: Genome Mapping, Tagging & Characterization: Forest Trees - Odd P0983: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Population Structure Analysis in a Populus deltoides Association Evolutionary History of Redwoods Revealed By Transcriptome and Population Targeted Sequence Capture Justyna A Resztak1, Annette M Fahrenkrog1, Juan J Acosta2, Leandro Gomide Alison Dawn Scott and David A Baum, University of Wisconsin, Madison, Neves1, Brad Barbazuk1 and Matias Kirst1, (1)University of Florida, Madison, WI Gainesville, FL, (2)University of Florida - SFRC, Gainesville, FL P0984: Genome Mapping, Tagging & Characterization: Forest Trees - Even P0980: Genome Mapping, Tagging & Characterization: Forest Trees - Even Predictive Accuracy of Models Based on Multiple Genomic Attributes in Quantification of Nitrogen Fixation By Black Cottonwood's Endophytic Pinus taeda L Microbiome Ross Whetten, Department of Forestry & Environmental Resources, Raleigh, Andrew Sher, University of California, San Diego, La Jolla, CA NC, Mengmeng Lu, Dept of Ecosystem Science and Management, Texas A&M University, College Station, TX, Konstantin V Krutovsky, Georg-August- University of Göttingen, Göttingen, Germany, Sreenath R Palle, Texas A&M P0981: Genome Mapping, Tagging & Characterization: Forest Trees - Odd University, College Station, TX, Candace Seeve, USDA-ARS, Columbia, MO Increasing Biomass Production with Reduced Inputs in Non-Legume and Carol Loopstra, Dept of Ecosystem Science and Management, Texas A&M Crops Using N-Fixing Endophytes of Poplar University, College Station, TX

1 1 2 1 Sharon L Doty , Zareen Khan , Andrew W Sher , Neil D Fleck , Mahsa Khorasani1, Shyam Kandel1, Jenny L Knoth1, Amy S Baum1, Thomas H P0985: Genome Mapping, Tagging & Characterization: Forest Trees - Odd 1 1 DeLuca and Soo-Hyung Kim , (1)University of Washington, Seattle, WA, Including Dominance Effects in Genomic Selection Regression Models (2)University of California San Diego, San Diego, CA with Different Priors - Pinus Taeda

Janeo Almeida Filho1, Joao F Rodrigues Guimaraes1, Marcio F Resende Jr1, P0982: Genome Mapping, Tagging & Characterization: Forest Trees - Even Rodrigo Furtado dos Santos1, Patricio R Munoz2 and Matias Kirst1, Promoting Conifer Genomics (ProCoGen) - a EU-Funded Research (1)University of Florida, Gainesville, FL, (2)University of Florida, Agronomy Project on Conifer Genomics Department, Gainesville, FL

Berthold Heinze, Austrian Federal Research Centre for Forests (BFW), Vienna, Austria, Maria Teresa Cervera, INIA-CIFRO, Madrid, Spain and Carmen Diaz-Sala, University of Alcala, Alcala de Henares - Madrid, Spain

284 P0986: Genome Mapping, Tagging & Characterization: Forest Trees - Even P0988: Genome Mapping, Tagging & Characterization: Forest Trees - Even Marker-Assisted Selection for Disease Resistance in Loblolly Pine (Pinus Genome Annotation and Repeat Sequence Characterization in Sugar Pine taeda, L) (Pinus lambertiana) William Patrick Cumbie1, Dudley Huber2, Victor Steel1, Will Rottmann1, Les Robin Paul1, Sowmya Kuruganti1, Kristian Stevens2, Daniel Gonzalez-Ibeas1, Pearson1 and Michael Cunningham3, (1)ArborGen Inc, Ridgeville, SC, Pedro J Martinez-Garcia3, John Liechty3, Hans Vasquez-Gross3, Emily Grau3, (2)Quantitative Genetic Services LLC, Toccoa, GA, (3)ArborGen Inc, Carol Loopstra4, Aleksey Zimin5, Ann Holtz-Morris6, Maxim Koriabine6, Tallahassee, FL James A Yorke7, Marc Crepeau2, Daniela Puiu8, Steven L Salzberg8, Pieter J 6 9 10 2 deJong , Keithanne Mockaitis , Dorrie Main , Charles H Langley , David Neale3 and Jill Wegrzyn1, (1)Department of Ecology and Evolutionary Biology, P0987: Genome Mapping, Tagging & Characterization: Forest Trees - Odd University of Connecticut, Storrs, CT, (2)Department of Evolution and Survey of the Sugar Pine (Pinus lambertiana) Transcriptome By Deep Ecology, University of California, Davis, Davis, CA, (3)Department of Plant Sequencing Sciences, University of California, Davis, Davis, CA, (4)Dept of Ecosystem Science and Management, Texas A&M University, College Station, TX, 1 2 3 Daniel Gonzalez-Ibeas , Pedro J Martinez-Garcia , Randi Famula , Carol (5)Institute for Physical Science and Technology, University of Maryland, 4 4 3 5 Loopstra , Jeffrey Puryear , David Neale and Jill Wegrzyn , (1)Department of College Park, MD, (6)Children's Hospital Oakland Research Institute, Oakland, Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, CA, (7)Institute for Physical Science and Technology and Departments of (2)Department of Plant Sciences University of California, Davis, CA, (3)Dept Mathematics and Physics, University of Maryland, College Park, MD, (8)Johns Plant Sciences University of California, Davis, CA, (4)Dept of Ecosystem Hopkins University, School of Medicine, Baltimore, MD, (9)Department of Science and Management, Texas A&M University, College Station, TX, Biology, Indiana University, Bloomington, IN, (10)Washington State (5)Department of Ecology and Evolutionary Biology - University of University, Pullman, WA Connecticut, Storrs, CT

P0989: Genome Mapping, Tagging & Characterization: Forest Trees - Odd A Field Experiment to Identify the Molecular Mechanisms Involved in Drought Stress Adaptation in Maritime Pine (Pinus pinaster Ait)

Gregoire Le Provost, INRA, BIOGECO, UMR 1202, CESTAS, France, Céline Lalanne, INRA, , BIOGECO, UMR 1202, Cestas, France, Erwan Guichoux, INRA, BIOGECO, UMR 1202, Cestas, France, Christophe Plomion, INRA,BIOGECO, UMR 1202, Bordeaux, France and Jean-Marc Gion, CIRAD, UMR AGAP, Montpellier, France

P0990: Genome Mapping, Tagging & Characterization: Forest Trees - Even P0994: Genome Mapping, Tagging & Characterization: Forest Trees - Even Linkage Disequilibrium Analysis in a Two-Generation Pedigree of Reticulate Evolution in Eucalypts: Evidence of Whole Chloroplast Capture Maritime Pine Among Sections of Corymbia Fikret Isik1, Jérôme Bartholomé2, Annie Raffin3, Christophe Plomion4, Adam Healey, University of Queensland, St Lucia, Australia 3 3 Laurent Bouffier and Leopoldo Sanchez , (1)North Carolina State University, Raleigh, NC, (2)INRA, Cestas, France, (3)INRA, Bordeaux, France, (4)INRA,BIOGECO, UMR 1202, Bordeaux, France P0995: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Cytological Analysis of Reciprocal Translocation Hypothesis in Chestnut Using BAC-FISH P0991: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Nurul Islam-Faridi1, MA Majid2, Tatyana Zhebentyayeva3, L Georgi4, Anthocyanin and Tannin Contents in High Elevation Conifers, Pinus 5 4 6 7 cembra and Larix decidua Margaret Staton , F Hebard , P Sisco and C Dana Nelson , (1)Southern Institute of Forest Genetics, US Forest Service, College Station, TX, (2)Dept of Daniela Jahn and Berthold Heinze, Austrian Federal Research Centre for Ecosystem Science & Management, College Station, TX, (3)Clemson Forests (BFW), Vienna, Austria University, Clemson, SC, (4)The American Chestnut Foundation, Meadowview, VA, (5)University of Tennessee Institute of Agriculture, Knoxville, TN, (6)Carolinas Chapter of The American Chestnut Foundation, P0992: Genome Mapping, Tagging & Characterization: Forest Trees - Even Asheville, NC, (7)Southern Institute of Forest Genetics, US Forest Service, Genomic Selection in a Multi-Generation Breeding Population of Maritime Saucier, MS Pine Jérôme Bartholomé, INRA, Cestas, France, Marjorie Vidal, FCBA, Bordeaux, P0996: Genome Mapping, Tagging & Characterization: Forest Trees - Even France, Joost van Heerwaarden, Wageningen University, Wageningen, Identification of the Tonoplast Intrinsic Aquaporin Genes in Eucalyptus Netherlands, Fikret Isik, North Carolina State University, Raleigh, NC, grandis and Characterization of EgTIP2, an Osmotic Stress-Responsive Christophe Plomion, INRA,BIOGECO, UMR 1202, Bordeaux, France and Gene Laurent Bouffier, INRA, Bordeaux, France 1 2 1 Marcela Iara Rodrigues , Juliana Pereira Bravo and Ivan G Maia , (1)IB - UNESP - Department of Genetics, Botucatu, SP, Brazil, (2)IB - UNESP - P0993: Genome Mapping, Tagging & Characterization: Forest Trees - Odd Department of Genetics, Botucatu, Brazil Flavonols Biosynthetic Genes are Activated during the Inclination Stress Response in Pine Patricio Ramos, Joselin Guajardo, Maria A Moya-León and Raul Herrera, Institute of Biological Sciences - University of Talca, Talca, Chile

285 P0997: Genome Mapping, Tagging & Characterization: Forest Trees - Odd P1000: Genome Mapping, Tagging & Characterization: General Comparative - Classical and 'omics' Approaches to Control Witches' Broom Even (Moniliopthora perniciosa) Disease of Cacao The 200 Mammals Project: Sequencing Genomes by a Novel Cost-

1 2 1 Effective Method, Yielding a High-Resolution Annotation of the Human Karina Peres Gramacho , Didier Clement , Jose Luis Pires , Uilson Vanderlei Genome Lopes1 and Fabienne Micheli3, (1)Cacao Research Center (CEPEC/CEPLAC), Itabuna, Brazil, (2)CIRAD, UMR AGAP, Montpellier, France, (3)Universidade Jeremy Johnson1, Jessica Alfoldi1, Jason Turner-Maier1, Ross Swofford1, Eva Estadual de Santa Cruz (UESC), Ilheus, Brazil Muren2, Oliver Ryder3, Iain MacCallum1, David B Jaffe1 and Kerstin Lindblad- 4 Toh , (1)Broad Institute, Cambridge, MA, (2)Uppsala University, Uppsala, Sweden, (3)San Diego Zoo Institute for Conservation Research, Escondido, P0998: Genome Mapping, Tagging & Characterization: Forest Trees - Even CA, (4)Science for Life Laboratory, Uppsala University, Uppsala, Sweden Molecular Characterization of Calotropis procera and the Calotropain Gene P1001: Genome Mapping, Tagging & Characterization: General Comparative - Yves Sprycha1, D Angelo R Agossou Yao2, Stefan Porembski1 and Renate Odd 1 Horn , (1)University of Rostock, Rostock, Germany, (2)Heinrich-Heine- Banana Genome Contributes to Understand Grass Chromosome Number Universität Düsseldorf, Düsseldorf, Germany Reduction and Genome Repatterning Mechanism-Grasses and Banana

Xiyin Wang, Hebei United University, Tangshan, Hebei, China P0999: Genome Mapping, Tagging & Characterization: General Comparative - Odd Genomic Strategies Reveal Biomarkers Underlying Insulin Sensitivity As a P1002: Genome Mapping, Tagging & Characterization: General Comparative - Link Between Obesity and Type 2 Diabetes Even The Ensembl Farm: All You Need Is Livestock Amy Agbottah, Virginia State University, Henrico, VA and Glenn Harris, Virginia State University, Petersburg, VA Thibaut Hourlier, Fergal Martin, Rishi Nag, Daniel N Murphy, Carlos Garcia- Giron, Daniel Barrell, Konstantinos Billis, Bronwen Aken and Paul Flicek, European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, United Kingdom

P1003: Genome Mapping, Tagging & Characterization: General Comparative - P1006: Genome Mapping, Tagging & Characterization: General Comparative - Odd Even Genomic Strategies Reveal Biomarkers Underlying Racial/Ethnic Genomicus: Fast and Intuitive Comparative Genomics in Plant and Differences in Body Composition Animal Genome

Bre Minniefield and Glenn Harris, Virginia State University, Petersburg, VA Alexandra Louis1, Thi Thuy Nga Nguyen1, Matthieu Muffato2 and Hugues 3 Roest Crollius , (1)IBENS Paris, Paris, France, (2)EBI, Cambridge, United Kingdom, (3)Ecole Normale Supérieure, Institute of Biology (IBENS), Paris, P1004: Genome Mapping, Tagging & Characterization: General Comparative - France Even

The Role of Deleterious Substitutions in Crop Genomes P1007: Genome Mapping, Tagging & Characterization: General Comparative - Thomas J Y Kono1, Fengli Fu1, Mohsen Mohammadi1, Robert M Stupar1, Odd 2 3 1 4 Gary J Muehlbauer , Peter L Tiffin , Kevin P Smith , Justin Fay and Peter L Stable Chloroplast: Myth or Reality? Morrell5, (1)Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, (2)Department of Plant Biology, University of Shailesh Vinay Joshi and Dyfed Evans, South African Sugarcane Research Minnesota, St Paul, MN, (3)Department of Plant Biology, University of Institute, Durban, South Africa Minnesota, Saint Paul, MN, (4)Washington University School of Medicine, St Louis, MO, (5)Department of Agronomy and Plant Genetics, University of Minnesota, Saint Paul, MN P1008: Genome Mapping, Tagging & Characterization: General Comparative - Even

Surprising Complexity of MADS-Box Genes in Ferns and Their Allies P1005: Genome Mapping, Tagging & Characterization: General Comparative - Revealed By the 1000 Plant Transcriptome Project Odd Genome-Wide Analysis of Thionin Genes in Higher Plants Lydia Gramzow and Günter Theißen, Friedrich Schiller University Jena, Jena, Germany 1 2 1 Kuaybe Yucebilgili Kurtoglu , Ertugrul Filiz , Ibrahim Ilker Ozyigit and Recep Vatansever1, (1)Marmara University, +stanbul, Turkey, (2)Duzce University, Duzce, Turkey

286 P1009: Genome Mapping, Tagging & Characterization: General Comparative - P1012: Genome Mapping, Tagging & Characterization: General Comparative - Odd Even Analysis of OneKP Transcriptomes Reveals Unequal Distribution of The Formation of DNA Transposon-Induced Tandem Direct Duplications Terpene Synthase Genes Across Diverse Taxa in the Plant Kingdom and Their Occurrence Across 21 Plant Species Qidong Jia, Graduate School of Genome Science and Technology, University Tao Zuo, Iowa state University, Ames, IA of Tennessee, Knoxville, TN, Xinlu Chen, Department of Plant Sciences, The University of Tennessee, Knoxville, TN, Guanglin Li, School of Life Sciences, Shaanxi Normal University, Xi'an, China, Gane Ka-Shu Wong, Department of P1013: Genome Mapping, Tagging & Characterization: General Comparative - Biological Sciences, University of Alberta, Edmonton, AB, AB, Canada and Odd Feng Chen, Department of Plant Sciences, University of Tennessee, Knoxville, Comparative Genomics of Bremia lactucae TN Rosa Juliana Gil1, Lida Derevnina2, Sebastian Reyes Chin-Wo1, Joan Wong3 1 and Richard Michelmore , (1)Genome Center, University of California, Davis, P1010: Genome Mapping, Tagging & Characterization: General Comparative - CA, (2)UC Davis Genome Center, Davis, CA, (3)Bayer Crop Science, Gent, Even Belgium Non-Random Patterns of Genome-Wide Sequence Polymorphisms Xianran Li1, Michael Scanlon2 and Jianming Yu1, (1)Iowa State University, P1014: Genome Mapping, Tagging & Characterization: General Comparative - Ames, IA, (2)Cornell University, Ithaca, NY Even Plastid Evolution of the Heterotrophic Microalgae Prototheca P1011: Genome Mapping, Tagging & Characterization: General Comparative - Aren M Ewing, Solazyme Inc, South San Francisco, CA Odd

Expansion of Gene Families Encoding Disease Resistance Related Proteins in the Lactuca Clade within the Compositae Sebastian Reyes Chin-Wo1, Marilena Christopoulou1, Leah McHale2, Alexander Kozik1 and Richard Michelmore1, (1)Genome Center, University of California, Davis, CA, (2)The Ohio State University, Columbus, OH

P1015: Genome Mapping, Tagging & Characterization: General Comparative - P1018: Genome Mapping, Tagging & Characterization: General Comparative - Odd Even de novo Construction of a "Gene Space" for a Diploid Plant Genome Rich Using Physcomitrella patens to Reconstruct the Role of EVE1 in the in Repetitive Sequences Evolution of Land Plants

Christelle Aluome1, Grégoire Aubert2, Susete Alves Carvalho3, Elodie Johnathon Roger Blahut, University of Florida, Gainesville, FL 4 5 2 Marquand , Marie-Christine Le Paslier , Judith Burstin and Dominique Brunel6, (1)INRA_EPGV_US1279, Evry Cedex, France, (2)INRA UMR1347, Dijon Cedex, France, (3)IRISA, Rennes, France, P1019: Genome Mapping, Tagging & Characterization: General Comparative - (4)INRA_EPGV_US1279,CEA-IG/Centre National de Genotypage, Evry, Odd France, (5)INRA, US1279 EPGV, CEA-IG/Centre National de Génotypage, Formal Criteria for Gene Families and the Paucity of Large Families in EVRY, France, (6)INRA-EPGV, CP5721 Evry Cedex, France Amborella Compared to All Other Angiosperms

1 1 2 David Sankoff , Chunfang Zheng , Poly Hannah da Silva and Simone P1016: Genome Mapping, Tagging & Characterization: General Comparative - Dantas2, (1)University of Ottawa, Ottawa, ON, Canada, (2)Universidade Even Federal Fluminense, Niterói, RJ, Brazil Crown Root Regulation in Response to Drought in Setaria and Brachypodium P1020: Genome Mapping, Tagging & Characterization: General Comparative - Muh-ching Yee1, Jose Sebastian1, Rubén Rellán Álvarez1, Rita Nieu2, John Even Vogel3, Hui Jiang4, Thomas P Brutnell4 and Jose Dinneny1, (1)Carnegie Comparative Genomics of Steinernema reveals Deeply Conserved Institution for Science, Stanford, CA, (2)USDA-ARS Western Regional Regulatory Networks in Nematodes Steinernema sp Research Center, Albany, CA, (3)DOE Joint Genome Institute, Walnut Creek, 1 2 3 4 CA, (4)Donald Danforth Plant Science Center, St Louis, MO Marissa Macchietto , Adler Dillman , Igor Antoshechkin , Edwin E Lewis , Heidi Goodrich-Blair5, Patricia Stock6, Byron Adams7, Paul W Sternberg3 and 1 Ali Mortazavi , (1)University of California, Irvine, Irvine, CA, (2)Stanford, P1017: Genome Mapping, Tagging & Characterization: General Comparative - Stanford, CA, (3)California Institute of Technology, Pasadena, CA, Odd (4)University of California, Davis, Davis, CA, (5)University of Wisconsin, CAM Expression in the Homoploid Hybrid Yucca gloriosa Madison, Madison, WI, (6)University of Arizona, Tucson, AZ, (7)Brigham Young University, Provo, UT Karolina Heyduk and Jim Leebens-Mack, University of Georgia, Athens, GA

287 P1021: Genome Mapping, Tagging & Characterization: Natural Populations - P1024: Genome Mapping, Tagging & Characterization: Natural Populations - Odd Even DNA Barcoding of Bats from Brazilian Midwest Genetic Signatures of Climate Change: The Alpine Marmot Genome Karina de Cassia Faria1, Tatiane Pires Sousa1, Joaquim Manoel da Silva1, Achchuthan Shanmugasundram, MRC National Institute for Medical Francisco P Lobo2 and Paulo César Venere3, (1)Universidade do Estado de Research, London, United Kingdom Mato Grosso, Nova Xavantina, Brazil, (2)Embrapa Informática Agropecuária, Campinas, SP, Brazil, (3)Universidade Federal do Mato Grosso, Cuiabá, Brazil P1025: Genome Mapping, Tagging & Characterization: Natural Populations - Odd P1022: Genome Mapping, Tagging & Characterization: Natural Populations - Fishing for Selection, but Only Catching Bias: Examining Library Effects Even in Double-Digest RAD Data in a Non-Model Marine Species Genetics and Genomics: Powerful Tools for Wildlife Conservation Jonathan B Puritz, Christopher M Hollenbeck and John R Gold, Marine Caitlin J Curry1, Paula A White2 and James N Derr1, (1)Texas A&M Genomics Laboratory, Harte Research Institute, Department of Life Sciences, University, College Station, TX, (2)Zambia Lion Project, University of Texas A&M University - Corpus Christi, Corpus Christi, TX California, Los Angeles, Los Angeles, CA P1026: Genome Mapping, Tagging & Characterization: Natural Populations - P1023: Genome Mapping, Tagging & Characterization: Natural Populations - Even Odd Weak Population Genetic Differentiation of the Edible Dormouse (Glis Genetic and Environmental Variation of Native and Non-Native glis) in the Stolowe Mountains in Poland

Populations of a Compilo Species: The Brachypodium distachyon Species 1 1 1 Complex Magdalena Moska , Heliodor Wierzbicki , Magdalena Zato)-Dobrowolska , Katarzyna Kozyra1, Jadwiga Jakubiec2 and Tomasz Strzala1, (1)Wroclaw Jared C Streich1, Pip Wilson2, Kevin D Murray2, Norman Warthmann3, University of Environmental and Life Sciences, Wroclaw, Poland, (2)The Shuangshuang Liu4, Pilar Catalan5, Luis Mur6, Riyan Chen2, Niccy Aitken2, Stolowe Mountains National Park, Kudowa-Zdroj, Poland 2 2 Justin O Borevitz and Aaron Chuah , (1)Australian National University, Canberra, NT, Australia, (2)Australian National University, Canberra, Australia, (3)The Australian National University, Canberra, ACT, Australia, (4)University of California, Davis, Davis, CA, (5)Department of Agriculture (Botany), High Polytechnic School of Huesca, University of Zaragoza, Huesca, Spain, (6)Aberystwyth University, Aberystwyth,, Wales

P1027: Genome Mapping, Tagging & Characterization: Natural Populations - P1030: Genome Mapping, Tagging & Characterization: Natural Populations - Odd Even The Distribution of Wks genes and Sequence Conservation of WKS1 in Adaptive Trait Variaiton and Genetic Divergence of a Widespread Native Wild Emmer Wheat Natural Populations Grass Andropogon gerardii Across a Strong Climate Gradient in the US Great Plains Lin Huang1, Hanan Sela2, Lihua Feng1, Qijiao Chen3, Tamar Krugman1, Jun Yan4, Jorge Dubcovsky5 and Tzion Fahima1, (1)University of Haifa, Haifa, Matthew Galliart1, Brian Maricle2, Sara G Baer3, David Gibson4, L Wilson5, Israel, (2)Tel-Aviv University, Tel Aviv, Israel, (3)Northwest A&F University, Loretta C Johnson6, Paul St Amand7, Jesse Poland1, Sofia Sabates8, Hannah Yangling, China, (4)Chengdu University, Chengdu, China, (5)University of Tetreault8, Johnny Bryant8, Theodore Morgan9, Mary Knapp10 and Nora California Davis, Davis, CA Bello11, (1)Kansas State University, Manhattan, KS, (2)Biology Department,, Hays, KS, (3)Southern Illinois University, Carbondale, IL, (4)Divison of plant biology, Carbondale, IL, (5)Biology, Carbondale, IL, (6)Kansas state P1028: Genome Mapping, Tagging & Characterization: Natural Populations - university, Manhattan, KS, (7)USDA-ARS-Small Grain Genotyping Lab, Even Manhattan, KS, (8)Division of Biology, Manhattan, KS, (9)Kansas State The Genetics of Divergence Between Upland and Lowland Ecotypes of University, Department of Biology, Manhattan, KS, (10)Departement of Panicum virgatum Agronomy, Manhattan, KS, (11)Kansas State University, Department of Statistics, Manhattan, KS Elizabeth R Milano, University of Texas at Austin, Austin, TX, David Lowry,

The Unviersity of Texas at Austin, Ausitn, TX and Tom Juenger, University of Texas-Austin, Austin, TX P1031: Genome Mapping, Tagging & Characterization: Natural Populations - Odd

Analysis of Genetic Stability in Some Cyclamen Species Endemic to P1029: Genome Mapping, Tagging & Characterization: Natural Populations - Turkey Following Cryopreservation By Vitrification Odd Exploring Genetic Diversity of the Atacama Desert Flora Using High- Tolga Izgu1, Basar Sevindik2, Ozhan Simsek3, Pembe Curuk4, Yildiz Kacar3 Throughput Transcriptome Sequencing and Yesim Yalcin Mendi3, (1)Department of Plant Sciences, University of California, Davis, CA, (2)Department of Horticulture, Faculty of Agriculture, Henrietta Pál-Gábor, Carol Moraga, Tatiana Kraiser, Francisca P Díaz, University of Cukurova Balcalı, Adana, Turkey, (3)Department of Horticulture, Claudio Latorre and Rodrigo A Gutiérrez, Pontificia Universidad Católica de Faculty of Agriculture, University of Cukurova, ADANA, Turkey, Chile, Santiago, Chile (4)Department of Horticulture, Faculty of Agriculture, University of Cukurova, Adana, Turkey

288 P1032: Genome Mapping, Tagging & Characterization: Natural Populations - P1036: Genome Mapping, Tagging & Characterization: Natural Populations - Even Even Heterogeneous Signals of Selection in Antirrhinum Genome-Wide Association Mapping of Morphological Traits in Inter- and Intraspecies of Colchicum L Isabel María Liberal González, Real Jardín Botánico de Madrid (CSIC), Madrid, Spain and Jose Luis Blanco Pastor, Univetsity of Gothenburg, A Umut Tüyel1, Ezgi Cabuk Sahin2, Funda Senturk Akfirat3, Yildiz Aydin2, Göteborg, Sweden Muhammet Sakiroglu4, Erdal Kaya5 and Ahu Altinkut Uncuoglu1, (1)Faculty of Engineering - Department of Bioengineering - Marmara University, Istanbul, Turkey, (2)Faculty of Science and Arts - Department of Biology - Marmara P1033: Genome Mapping, Tagging & Characterization: Natural Populations - University, Istanbul, Turkey, (3)Gebze Institute of Technology - Department of Odd Biology and Genetics, Kocaeli, Turkey, (4)Department of Bioengineering - Genome-Wide Patterns of Linkage Disequilibrium in Red Drum Faculty of Engineering and Architecture - Kafkas University, Kars, Turkey, (Sciaenops ocellatus) (5)Ataturk Central Horticultural Research Institute, Yalova, Turkey

Christopher M Hollenbeck, Jonathan B Puritz, David S Portnoy and John R Gold, Marine Genomics Laboratory, Harte Research Institute, Department of P1037: Genome Mapping, Tagging & Characterization: Natural Populations - Life Sciences, Texas A&M University - Corpus Christi, Corpus Christi, TX Odd Different Microbiomes Are Hosted in the Rhizosphere and Mycorrhizosphere of Tuber magnatum Truffle Seedlings P1034: Genome Mapping, Tagging & Characterization: Natural Populations - Even Gian Maria Niccolò Benucci1, Anna Sandionigi2, Massimo Labra2, Luisa Inconsistent Clines and Shifting Thresholds: The Genetics of Seasonal Massaccesi1, Alberto Agnelli1, Domizia Donnini1 and Emidio Albertini1, Adaptation in Annual Mimulus guttatus (1)University of Perugia, Perugia, Italy, (2)ZooPlantLab, Dipartimento di Biotecnologie e Bioscienze, Milano, Italy Benjamin K Blackman1, Nicholas J Kooyers1 and John H Willis2,

(1)University of Virginia, Charlottesville, VA, (2)Duke University, Durham, NC P1038: Genome Mapping, Tagging & Characterization: Other Plant Species - Even

The Flax (Linum usitassimum) Genome, A Revolution in Evolution P1035: Genome Mapping, Tagging & Characterization: Natural Populations - Odd Christopher Cullis, Case Western Reserve University, Cleveland, OH A Single Locus Underlies Ecological Divergence and Reproductive Isolation in Yeast

Katie J Clowers, University of Wisconsin-Madison, Madison, WI

P1039: Genome Mapping, Tagging & Characterization: Other Plant Species - P1042: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Even The Refined Flax Genome, Its Evolution and Applications EMS Mutants and Functional Genomics to Dissect Cell Wall Biology in Flax Frank M You1, Pingchuan Li1, Santosh Kumar2, Raja Ragupathy3, Mitali Banik1, Scott Duguid1, Helen Booker4, Michael Deyholos5, Yong-Bi Fu6, Simon W Hawkins1, Maxime Chantreau1, Wout Boerjan2, Arata Yoshinaga3, Andrew G Sharpe7 and Sylvie Cloutier8, (1)Agriculture and Agri-Food Canada, François Mesnard4 and Brigitte Chabbert5, (1)University of Lille 1, Villeneuve Morden, MB, Canada, (2)Agriculture and Agri-Food Canada, Brandon, MB, d'Ascq, France, (2)Department of Plant Systems Biology, VIB, Gent, Belgium, Canada, (3)Department of Plant Science, University of Manitoba, Winnipeg, (3)Kyoto University, Kyoto, Japan, (4)Université de Picardie Jules Verne, MB, Canada, (4)University of Saskatchewan, Saskatoon, SK, Canada, Amiens, France, (5)INRA URCA UMR614 FARE, Reims, France (5)University of British Columbia, Kelowna, BC, Canada, (6)Agriculture and Agri-Food Canada, Saskatoon, SK, Canada, (7)National Research Council Canada, Saskatoon, SK, Canada, (8)Agriculture and Agri-Food Canada, P1043: Genome Mapping, Tagging & Characterization: Other Plant Species - Ottawa, ON, Canada Odd FlaxDB: A Comprehensive and Integrated Genome and Breeding Database for Flax Improvement P1040: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Yunfeng Shan1, Pingchuan Li2, Scott Duguid2, Sylvie Cloutier3, Michael 4 5 5 6 2 GBS for Ipomoea trifida: A Next Generation Marker System for Deyholos , Yi Wang , Yong Q Gu , Helen Booker and Frank M You , Sweetpotatoes (1)Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada, (2)Agriculture and Agri-Food Canada, Morden, MB, Canada, Awais Khan, David Maria, Reinhard Simon, Federico Diaz, Raul Eyzaguirre (3)Agriculture and Agri-Food Canada, Ottawa, ON, Canada, (4)University of and Wolfgang Grüneberg, International Potato Center (CIP), Lima, Peru British Columbia, Kelowna, BC, Canada, (5)USDA ARS, Western Regional Research Center, Albany, CA, (6)University of Saskatchewan, Saskatoon, SK, Canada P1041: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing P1044: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Eiichiro Ono, Suntory Global Innovation Center Ltd, Osaka, Japan Genome Assembly of Amaranthus Hypochondriacus: An Emerging C4 Pseudo-Cereal Grain Crop Jared Clouse1, Justin T Page1, Thiruvarangan Ramaraj2, Josh Udall1, Eric N Jellen1 and Jeff Maughan1, (1)Brigham Young University, Provo, UT, (2)National Center for Genome Resources, Santa Fe, NM

289 P1045: Genome Mapping, Tagging & Characterization: Other Plant Species - P1048: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Even Next Generation Sequencing, Assembly and Annotation of Chloroplasts de novo Assembly and Molecular Marker Development in Tall Fescue for Phylogenetic Analysis of Amaranths Using RNA Seq Data

Erika Viljoen, Agricultural Research Council, Pretoria, South Africa, Dave K Shyamal K Talukder1, Perumal Azhaguvel2, Konstantin Chekhovskiy1, Berger, University of Pretoria, Dept Plant Sciences, Pretoria, South Africa and Shreyartha Mukherjee1 and Malay C Saha1, (1)The Samuel Roberts Noble Jasper Rees, Agricultural Research Council, Gauteng, South Africa Foundation, Ardmore, OK, (2)Syngenta, Slater, IA

P1046: Genome Mapping, Tagging & Characterization: Other Plant Species - P1049: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Odd Comparative Study of Lysine Biosynthesis in Edible Grains of Genes and QTLs Controlling Heavy Metal Uptake in Perennial Grasses Caryophyllales Grown on Phytotoxic Soil Meeta Sunil, Nivedita Hariharan, Arjun Sreedhar, Thejas Makam Shivakumar Lan Yun, Inner Mongolia Agricultural University, Hohhot, China, Steve Gupta, Keerthivasan Chandradoss Raanin, Savita Karthikeyan, Subhashini Larson, USDA-ARS, Forage & Range Research Lab, Logan, UT, Kevin Srinivasan and Bibha Choudhary, Institute of Bioinformatics and Applied Jensen, USDA-ARS, Forage & Range Lab, Logan, UT, Jack E Staub, USDA- Biotechnology, Bangalore, Karnataka, India ARS Forage & Range Research lab, Logan, UT and Paul Grossl, Utah State University, Logan, UT P1047: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd P1050: Genome Mapping, Tagging & Characterization: Other Plant Species - Towards Understanding the Evolution of Repeat Elements in Even Caryophyllales Genomic Selection Using Genotyping-By-Sequencing Data with Different Coverage Depth in Perennial Ryegrass Suran R Nambisan, Keerthivasan Chandradoss Raanin, Meeta Sunil, Arjun Sreedhar, Thejas Makam Shivakumar Gupta, Bibha Choudhary and Fabio Cericola1, Luc L Janss1, Stephen Byrne2, Dario Fè3, Adrian Czaban2, Subhashini Srinivasan, Institute of Bioinformatics and Applied Torben Asp2, Morten Greve-Pedersen4, Niels Roulund5, Christian Sig Jensen6, Biotechnology, Bangalore, Karnataka, India Ingo Lenk7 and Just Jensen3, (1)Aarhus University, Tjele, Denmark, (2)Aarhus University, Slagelse, Denmark, (3)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark, (4)DLF-Trifolium, St Heddinge, Roskilde, Denmark, (5)DLF-Trifolium, St Heddinge, Denmark, Roskilde, Denmark, (6)DLF Trifolium, Store Heddinge, Denmark, (7)DLF-Trifolium, St Heddinge, Denmark, Store Heddinge, Denmark

P1051: Genome Mapping, Tagging & Characterization: Other Plant Species - P1054: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Even Sequencing Based Identification of Resistance Genes in Lolium multiflorum Partitioning SNPs Identified By GBS into Genome Annotation Classes and Calculating SNP-Explained Variances for Heading Date and Disease Verena Knorst1, Franco Widmer1, Bruno Studer2, Stephen Byrne3, Torben 3 1 Resistance from the Resulting Genomic Relationship Matrices - Lolium Asp and Roland Kölliker , (1)Agroscope Institute for Sustainability Sciences, perenne Zurich, Switzerland, (2)Swiss Federal Institute of Technology, Zuerich, Switzerland, (3)Aarhus University, Slagelse, Denmark Stephen Byrne1, Fabio Cericola2, Luc L Janss3, Just Jensen4, Dario Fè4, Bilal 4 1 5 6 H Ashraf , Adrian Czaban , Morten Greve-Pedersen , Ingo Lenk , Christian Sig Jensen7 and Torben Asp8, (1)Aarhus University, Slagelse, Denmark, (2)Aarhus P1052: Genome Mapping, Tagging & Characterization: Other Plant Species - University, Tjele, Denmark, (3)Aarhus University, Aarhus, Denmark, Even (4)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark, The Massive Mitochondrial Genome of the Angiosperm Silene noctiflora Is (5)DLF-Trifolium, St Heddinge, Roskilde, Denmark, (6)DLF-TRIFOLIUM Evolving By Gain or Loss of Entire Chromosomes A/S, Store Heddinge, Denmark, (7)DLF Trifolium, Store Heddinge, Denmark, (8)Molecular Biology and Genetics, Aarhus University, Slagelse, Denmark Zhiqiang Wu and Daniel Sloan, Colorado State University, Fort Collins, CO

P1055: Genome Mapping, Tagging & Characterization: Other Plant Species - P1053: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Odd Using Massive Multivariate NIRS Data in Ryegrass Transcriptome Sequencing for Dissecting Growth Mechanism of a Commercially Important Sub-Tropical Bamboo - Dendrocalamus Vahid Edriss, Aarhus University, Tjele, Denmark, Morten Greve-Pedersen, hamiltonii DLF-Trifolium, St Heddinge, Roskilde, Denmark, Christian Sig Jensen, DLF Trifolium, Store Heddinge, Denmark and Just Jensen, Molecular Biology and Abhishek Bhandawat, Gagandeep Singh, Aparna S Raina and Ram K Genetics, Aarhus University, Tjele, Denmark Sharma*, * Author for correspondence, mrk_sharma@yahoocom ;

Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, India P1056: Genome Mapping, Tagging & Characterization: Other Plant Species - Even

Transcriptome Assemblies in Polyploid Spartina (Poaceae, Chloridoideae), Duplicate Gene Detection and Molecular Divergence Using Next- Generation Sequencing Julien Boutte, Malika Lily Ainouche and Armel Salmon, University of Rennes 1 - UMR CNRS 6553, Rennes, France

290 P1057: Genome Mapping, Tagging & Characterization: Other Plant Species - P1061: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Odd Whole Genome Sequencing of Eragrostis tef SEQUON - Sequencing the Onion Genome Gina Cannarozzi, Institute of Plant Sciences, University of Bern, Bern, Richard Finkers1, Wilbert van Workum2, Martijn van Kaauwen1, Henk Huits3, Switzerland and Zerihun Tadele, University of Bern, Bern, Switzerland Annemieke Jungerius4, Ben Vosman1 and Olga E Scholten1, (1)Wageningen UR Plant Breeding, Wageningen, Netherlands, (2)ServiceXS, Leiden, Netherlands, (3)Bejo Zaden BV, Warmenhuizen, Netherlands, (4)Genetwister P1058: Genome Mapping, Tagging & Characterization: Other Plant Species - Technologies BV, Wageningen, Netherlands Even

Genome Size and Chromosome Number Variation Among Caladium Species and Somaclonal Variants P1062: Genome Mapping, Tagging & Characterization: Other Plant Species - Even 1 2 1 Zhe Cao , Shunzhao Sui and Zhanao Deng , (1)University of Florida, Detection and Characterization of Recombination Events at Sequence Wimauma, FL, (2)Southwest University, Chongqing, China Level in Recombinant Inbred Lines from an Inter-Specific Cross of Lactuca sativa x L serriola P1059: Genome Mapping, Tagging & Characterization: Other Plant Species - Alexander Kozik, Lutz Froenicke, Dean Lavelle, Maria Jose Truco, Sebastian Odd Reyes Chin-Wo and Richard Michelmore, Genome Center, University of Highly Reduced Plastid Genomes of Non-Photosynthetic Orchids California, Davis, CA Epipogium aphyllum and Epipogium roseum Mikhail I Schelkunov1, Viktoriya Ju Shtratnikova1, Maxim S Nuraliev1, Marc- P1063: Genome Mapping, Tagging & Characterization: Other Plant Species - André Selosse2, Aleksey A Penin1 and Maria D Logacheva1, (1)Lomonosov Odd Moscow State University, Moscow, Russia, (2)Muséum National d'Histoire Localization of a Novel Gene for Resistance to Fusarium Root Rot Race 2 Naturelle, Département Systématique et Evolution, Paris, France in Lettuce, Lactuca sativa L

Takato Koba1, Yukari Shimizu1, Akane Taguchi1, Fumika Chino1, Hiroaki P1060: Genome Mapping, Tagging & Characterization: Other Plant Species - Serizawa2, Kousuke Seki2, Hidenori Sassa1 and Shinji Kikuchi1, (1)Chiba Even University, Matsudo City, Japan, (2)Nagano Vegetable and Ornamental Crop Breeding Lettuce to Maximize Nutrional Content Across Diverse Experimental Station, Shiojiri, Japan Environments David W Still, Youngsook You and Danielle Ellis, Cal Poly Pomona, Pomona, CA

P1064: Genome Mapping, Tagging & Characterization: Other Plant Species - P1067: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Odd Construction of a Linkage Map with AFLPs to Identify Genes for Viroid Derived Small RNAs Can Cause Change of Expression in Selected Bacterial Leaf Spot Resistance in Lettuce (Lactuca sativa L) Genes of Hops

Huangjun Lu, Everglades Research & Education Center, University of Tine Pokorn1, Natasa Stajner1, Sebastjan Radisek2, Branka Javornik1 and Florida, Belle Glade, FL Jernej Jakse1, (1)University of Ljubljana, Biotechnical Faculty, Agronomy Department, Ljubljana, Slovenia, (2)Slovenian Institute for Hop Research and Brewing, Plant Protection Department, %alec, Slovenia P1065: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Molecular Mapping of the Banded Cucumber Beetle Resistance in P1068: Genome Mapping, Tagging & Characterization: Other Plant Species - Romaine Lettuce Valmaine Even Evaluation of Flooding Tolerance in Echinochloa Species Huangjun Lu1, Ramkrishna Kandel2, Gregg Nuessly2, Heather McAuslane3 and Jinguo Hu4, (1)Everglades Research & Education Center, University of Ji-Hoon Im, Gyoungju Nah and Do-Soon Kim, Seoul National University, Florida, Belle Glade, FL, (2)Everglades Research and Education Center, Seoul, South Korea University of Florida, Belle Glade, FL, (3)Entomology and Nematology Department, University of Florida, Gainesville, FL, (4)USDA ARS, Pullman, WA P1069: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd

The Draft Genome of Kalanchoë fedtschenkoi: A Model Plant Species for P1066: Genome Mapping, Tagging & Characterization: Other Plant Species - the Study of Crassulacean Acid Metabolism (CAM) Even High Quality de novo Assembly of the Common Ice Plant Rachel Brenchley, Suzanna Boxall, Louise Dever, Richard Gregory, (Mesembryanthemum crystallinum L) Transcriptome - A Functional Yongxiang Fang, Alistair C Darby, Neil Hall and James Hartwell, University Genomics Resource for Crassulacean Acid Metabolism (CAM) and of Liverpool, Liverpool, United Kingdom Halophytism Won Cheol Yim1, Richard L Tillett2, Bahay G Bilgi1, Rebecca L Albion1, Karen A Schlauch2, Samuel M D Seaver3 and John C Cushman1, (1)Department of Biochemistry and Molecular Biology, University of Nevada, Reno, Reno, NV, (2)Nevada Center for Bioinformatics, University of Nevada, Reno, Reno, NV, (3)Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL

291 P1070: Genome Mapping, Tagging & Characterization: Other Plant Species - P1073: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Odd Mapping of QTL Associated with Resistance to Cassava Brown Streak and Comparative Transcriptome Analysis of Cultivated Sweet Potato (Ipomea Mosaic Diseases in Outcrossing Cassava Cultivars Locally Cultivated in batatas) and Wild Ancestor (I trifida) Tanzania Sathish Kumar Ponniah, University of Arkansas at Pine Bluff, Pine Bluff, Esther A Masumba, International Institute for Tropical Agriculture (IITA), AR, Jyothi Thimmapuram, Purdue University, West Lafayette, IL, Ketaki Dar es salaam, Tanzania Bhide, Purdue University, West Lafayette, IN, Venu (Kal) Kalavacharla, Delaware State University, Dover, DE and Muthusamy Manoharan, University of Arkansan-PIne Bluff, Pine Bluff, AR P1071: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Two Cassava Novel Cap-Binding Proteins Interact with VPgs of Cassava P1074: Genome Mapping, Tagging & Characterization: Other Plant Species - Brown Streak Virus and Ugandan Cassava Brown Streak Virus Even Integrated Molecular and Morphological Studies of Daucus Zhongguo Xiong1, Shanshan Shi1, M Alejandra Mandel1, Morag Ferguson2, Teddy Amuge2, Peng Zhang3, Zhixin Liu4 and Steve Rounsley5, (1)University Carlos Arbizu, Dept Horticulture, University of Wisconsin-Madison, Madison, of Arizona, Tucson, AZ, (2)International Institute of Tropical Agriculture WI, Holly Ruess, USDA Agricultural Research Service, Madison, WI, Douglas (IITA), Nairobi, Kenya, (3)Institute of Plant Physiology & Ecology, Shanghai, Senalik, USDA-ARS, Madison, WI, Phil Simon, USDA ARS and University of China, (4)Chinese Academy of Tropical Agricultural Sciences, Haikou, China, Wisconsin - Madison, Madison, WI, Kathleen Reitsma, Iowa State University, (5)Dow Agrosciences, Indianapolis, IN North Central Regional Plant Introduction Station, Ames, IA and David Spooner, USDA - ARS, Madison, WI P1072: Genome Mapping, Tagging & Characterization: Other Plant Species - Even P1075: Genome Mapping, Tagging & Characterization: Other Plant Species - A Comparative Genomic Study of the C3 Sugar Beet and the C4 Edible Odd Grain Amaranth Resilience Traits in Underutilised Crops: Drought Tolerance in Bambara Groundnut Meeta Sunil, Nivedita Hariharan, Thejas Makam Shivakumar Gupta, Arjun Sreedhar, Keerthivasan Chandradoss Raanin, Savita Karthikeyan, Bibha Wai Kuan Ho, Crops For the Future, Semenyih, Malaysia Choudhary and Subhashini Srinivasan, Institute of Bioinformatics and Applied Biotechnology, Bangalore, Karnataka, India

P1076: Genome Mapping, Tagging & Characterization: Other Plant Species - P1079: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Odd Heritability and Genetic Basis of Top Size in Carrots (Daucus carota, L) RNA Sequencing$Mediated Transcriptome Analysis of a Naturally Occurring Uranium$Tolerant Species Prosopis juliflora Sarah D Turner, University of Wisconsin-Madison, Madison, WI and Philipp W Simon, USDA-ARS and University of Wisconsin-Madison, Madison, WI Chandra Obul Reddy Puli1, Sravani Kunduru1, B Jayanna Naik1, Pandit 1 1 1 Varakumar , Krishna Kumar Guduru , Suresh Raju Kandula , Akila Chandra Sekhar1, Vijay Bhaskar Reddy Lachagari2 and Arjula R Reddy3, (1)Yogi P1077: Genome Mapping, Tagging & Characterization: Other Plant Species - Vemana University, Kadapa, India, (2)SciGenome Labs Pvt Ltd, Kochi, India, Odd (3)University of Hyderabad, Hyderabad, India High-Resolution Mapping of Root and Leaf Anthocyanin Pigmentation QTL in Carrot P1080: Genome Mapping, Tagging & Characterization: Other Plant Species - Philipp W Simon, USDA-ARS and University of Wisconsin-Madison, Even Madison, WI, Pablo Cavagnaro, CONICET, and INTA EEA La Consulta, Development of an EMS-Induced Sesame Mutant Population for Target Mendoza, Argentina, Massimo Iorizzo, University of Wisconsin-Madison, Induced Local Lesions in Genomes (TILLING) Madison, WI, Mehtap Yildiz, Yuzuncu Yil University, Van, Turkey, Douglas Senalik, USDA-ARS, Madison, WI, Joshua Parsons, University of Wisconsin, Ming Li Wang, Brandon Tonnis, David Pinnow, J Bradly Morris and Gary A Madison, WI and Shelby Ellison, Department of Horticulture, University of Pederson, USDA-ARS, PGRCU, Griffin, GA Wisconsin, Madison, WI P1081: Genome Mapping, Tagging & Characterization: Other Plant Species - P1078: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Even Evolution of Panax ginseng Revealed by Genome Sequencing and Detecting and Characterizing the Highly Divergent Plastid Genome of the Chloroplast Genome Diversity Nonphotosynthetic Hydnora visseri (Hydnoraceae) Tae-Jin Yang1, Nam-Hoon Kim1, Woojong Jang1, Junki Lee1, Beom-Soon Julia Naumann1, Joshua P Der2, Loren Honaas3, Eric Kenneth Wafula3, Sarah Choi2, Kyunghee Kim1, Nomar Espinosa Waminal1, Hong-Il Choi3, Hyun- T Wagner1, Samuel S Jones3, Paula Ralph3, Jay F Bolin4, Erika Maass5, Seung Park1, Jonghoon Lee1, Hyun Oh Lee1, HyunJoo Lee1, Ho Jun Joh1, Jee Christoph Neinhuis1, Stefan Wanke1 and Claude dePamphilis3, (1)TU Dresden, Young Park1, Sampath Perumal1, Murukarthick Jayakodi1, Yun Sun Lee1, Chair for Botany, Dresden, Germany, (2)California State University Fullerton, Yeisoo Yu4 and Hyun Hee Kim5, (1)Seoul National University, Seoul, South University Park, PA, (3)Penn State University, University Park, PA, Korea, (2)PHYZEN Genomics Institute, Seoul, South Korea, (3)Korea Atomic (4)Catawba College, Salisbury, NC, (5)University of Namibia, Windhoek, Energy Reserach Institute, Jeongeup-si, South Korea, (4)Arizona Genomics Namibia Institute, University of Arizona, Tucson, AZ, (5)Plant Biotechnology Institute, Sahmyook University, Seoul, South Korea

292 P1082: Genome Mapping, Tagging & Characterization: Other Plant Species - P1084: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Even Comparative Exploration of Fern Genome Space Domestication of the Nitrogen Fixing Fern-Cyanobacteria Symbiosis Azolla for the Circular Economy Joshua P Der1, Emily Sessa2, Blaine Marchant3, Fay-Wei Li4, Carl J Rothfels5, Erin M Sigel6, Jo Ann Banks7, Matthew A Gitzendanner2, Clayton J Visger3, Paul Brouwer1, Adrie van der Werf2, Laura Dijkhuizen1, Klaas GJ Nierop1, Douglas E Soltis2, Pamela S Soltis2, Kathleen M Pryer6 and Paul G Wolf8, Gert-Jan Reichert1, Bruno Huettel3, Canan Külahoglu4, Samantha Kurz4, (1)California State University Fullerton, Fullerton, CA, (2)University of Andreas PM Weber4, Sjef Smeekens1, Andrea Bräutigam4 and Henriette Florida, Gainesville, FL, (3)University of Florida, Gainsville, FL, (4)Duke Schluepmann1, (1)Utrecht University, Utrecht, Netherlands, (2)Plant Research University, Durham, NC 27708, NC, (5)University of British Columbia, International, Wageningen-UR, Wageningen, Netherlands, (3)Max Planck- Vancouver, BC, Canada, (6)Duke University, Durham, NC, (7)Purdue Genome-centre Cologne, Köln, Germany, (4)Heinrich Heine Universität University, West Lafayette, IN, (8)Utah State University, Logan, UT Düsseldorf, Düsseldorf, Germany

P1083: Genome Mapping, Tagging & Characterization: Other Plant Species - P1085: Genome Mapping, Tagging & Characterization: Other Plant Species - Odd Odd Sequencing the Genome of Sinningia speciosa (Lodd) Hiern, a Reference The Azolla Genome and the Metagenomes of Its Obligate Endosymbionts: for the Neotropical Gesneriaceae Unlocking the Massive Green Potential of a Little Fern

Aureliano Bombarely, Virginia Polytechnic Institute and State University, Fay-Wei Li1, Shifeng Cheng2, Josh Der3, Bo Song2, Xun Xu2, Xin Liu2, Department of Horticulture, Blacksburg, VA and David Zaitlin, KTRDC - Andrea Bräutigam4, Carl J Rothfels5, Erin M Sigel6, Paul G Wolf7, Yoichiro University of Kentucky, Lexington, KY Kato8, Henriette Schluepmann9, Gane Ka-Shu Wong10 and Kathleen M Pryer1, (1)Duke University, Durham, NC, (2)BGI-Shenzhen, Shenzhen, China, (3)California State University, Fullerton, CA, (4)Heinrich Heine Universität Düsseldorf, Düsseldorf, Germany, (5)University of British Columbia, Vancouver, BC, Canada, (6)National Museum of Natural History, Smithsonian Institution, Washington, DC, (7)Utah State University, Logan, UT, (8)Crop and Environmental Sciences Division, International Rice Research Institute, Manila, Philippines, (9)Utrecht University, Utrecht, Netherlands, (10)Department of Biological Sciences, University of Alberta, Edmonton, AB, AB, Canada

P1086: Genome Mapping, Tagging & Characterization: Other Plant Species - P1088: Genome Mapping, Tagging & Characterization: Other Plant Species - Even Even Phylotranscriptomics of Ferns and Lycophytes, Two Key Lineages in Genome-Wide Identification of Novel Genes Involved with Photosynthesis Land-Plant Evolution and the Carbon Concentrating Mechanism of the Green Alga Chlamydomonas reinhardtii Shing H Zhan1, Carl J Rothfels1, Zhenxiang Xi2, Fay-Wei Li3, Emily Sessa4, Michael S Barker5, Joshua P Der6, Markus Ruhsam7, Anders Larsson8, Dylan Gregory P Reeves, University of Cambridge, Cambridge, United Kingdom 9 10 1 2 11 Burge , Lisa DeGironimo , Shona Ellis , Charles C Davis , Paul G Wolf , Jim Leebens-Mack12, Michael Deyholos13, Gane Ka-Shu Wong14, Dennis Wm Stevenson15 and Sean W Graham1, (1)University of British Columbia, P1089: Genome Mapping, Tagging & Characterization: Other Plant Species - Vancouver, BC, Canada, (2)Harvard University, Cambridge, MA, (3)Duke Odd University, Durham, NC 27708, NC, (4)University of Florida, Gainesville, FL, The Chara braunii Genome Sheds Light on the Origin of Land Plants (5)University of Arizona, Tucson, AZ, (6)California State University Fullerton, Fullerton, CA, (7)Royal Botanic Garden Edinburgh, Edinburgh, United Hidetoshi Sakayama, Kobe University, Kobe, Japan, Atsushi Toyoda, Kingdom, (8)Uppsala University, Uppsala, Sweden, (9)California Academy of Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Japan, Yutaka Sciences, San Francisco, CA, (10)New York Botanic Garden, Bronx, NY, Suzuki, University of Tokyo, Kashiwa, Japan, Asao Fujiyama, Comparative (11)Utah State University, Logan, UT, (12)University of Georgia, Athens, GA, Genomics Laboratory, National Institute of Genetics, Mishiyama, Japan, Stefan (13)University of British Columbia, Kelowna, BC, Canada, (14)Department of A Rensing, Faculty of Biology, University of Marburg, Marburg, Germany and Biological Sciences, University of Alberta, Edmonton, AB, AB, Canada, Tomoaki Nishiyama, Kanazawa University, Kanazawa, Japan (15)New York Botanical Garden, Bronx, NY P1090: Transformation - Even P1087: Genome Mapping, Tagging & Characterization: Other Plant Species - Ensifer-Mediated Transformation (EMT): A Novel Technology Platform Odd for Engineering Plant Genomes Transcriptome of the Gametophyte Thalli of Red Marine Algae, Pyropia Manuel A Lopez Vernaza1, Dheeraj Rathore1, Toni Wendt2, Fiona Doohan3 tenera, Under Drought Stress Condition and Ewen Mullins1, (1)Teagasc, Carlow, Ireland, (2)Carlsberg Research Centre, Sung Oh Im1, Sunhee Kim1, Hyun Shin Jung1, Mi Sook Hwang2, Eun-Jeong Copenhagen, Denmark, (3)University College Dublin, Dublin, Ireland 3 4 1 Park , Won-Joong Jeong and Dong-Woog Choi , (1)Chonnam National University, Gwangju, South Korea, (2)Aquatic Plant Variety Center, NFRDI, Mokpo, South Korea, (3)Seaweed Research Center, NFRDI, Mokpo, South Korea, (4)KRIBB, Daejeon, South Korea

293 P1091: Transformation - Odd P1095: Transformation - Odd Development of a Robotic Platform for Automated Screening and Improving Wheat Yield Under Heat Stress By Expressing Putative Transformation of Switchgrass Suspension Cultures Thermostable Starch Synthase Genes Elizabeth M Dlugosz1, Scott C Lenaghan2 and C Neal Stewart Jr1, Bin Tian1, Shyamal K Talukder2, Hyeonjun Lee1, Allan K Fritz1 and Harold N (1)Department of Plant Sciences, University of Tennessee, Knoxville, TN, Trick1, (1)Kansas State University, Manhattan, KS, (2)The Samuel Roberts (2)Center for Renewable Carbon, University of Tennessee, Knoxville, TN Noble Foundation, Ardmore, OK

P1092: Transformation - Even P1096: Transformation - Even TALEN-Mediated Editing of the Caffeic Acid 3-O-Methyltransferase for A Brassica napus Bi-Directional Promoter Exhibits Differential Leaf- Genetic Improvement of the Biofuel Feedstock Sugarcane Expression Patterns in Soybean Transgenic Lines Generated Using Agrobacterium-Mediated Transformation Je Hyeong Jung and Fredy Altpeter, University of Florida - IFAS, Gainesville, FL Toby Cicak, Dow AgroSciences, West Lafayette, IN

P1093: Transformation - Odd P1097: Transformation - Odd Transformation Efficiency, Transgene Integration Complexity and High-Throughput Transformation for Switchgrass Cell Cultures Expression Stability Following Biolistic or Agrobacterium-mediated Transformation of Sugarcane Kellie P Burris, University of Tennessee, Knoxville, TN, Scott C Lenaghan, Center for Renewable Carbon, University of Tennessee, Knoxville, TN and C Hao Wu1, Aloisio Vilarinho1, Faisal Saeed Awan1, Qianchun Zeng1, Baskaran Neal Stewart Jr, Department of Plant Sciences, University of Tennessee, Kannan1, Tenisha Phipps1, Jamie McCuiston2, Wenling Wang2, Kerry Caffall2 Knoxville, TN 1 and Fredy Altpeter , (1)University of Florida - IFAS, Gainesville, FL, (2)Syngenta Biotechnology Inc, Durham, NC P1098: Transformation - Even

Antibiotic Resistant Gene Deletion in Transgenic Tobacco P1094: Transformation - Even Comprehensive Suite of Vectors Suitable for Wheat Transformation Alexia Dickey and Kevin Wang, Northeastern State University, Broken Arrow, OK Alison K Huttly, Rothamsted Research, Harpenden, United Kingdom

P1099: Transformation - Odd P1102: Transformation - Even Non-Homologous End-Joining Proteins Limit T-DNA Integration into the Field Trial of Xanthomonas Wilt Disease-Resistant GM Bananas in East Plant Genome and Facilitate Transgene Expression Africa So-Yon Park1, Zarir Vaghchhipawala2, Balaji Vasudevan2, Lan-Ying Lee3, Leena Tripahti1, Jaindra Tripathi1, Andrew Kiggundu2, Sam Korie3, Frank Zhanyuan Zhang4, Stan Gelvin5 and Kirankumar S Mysore2, (1)Virginia Tech, Shotkoski4 and Wilberforce Tushemereirwe5, (1)International Institute of Blacksburg, VA, (2)The Samuel Roberts Noble Foundation, Ardmore, OK, Tropical Agriculture, Kampala, Uganda, (2)National Agricultural Research (3)Purdue University, West Lafayette, IN, (4)University of Missouri, Laboratories (NARL), Kampala, Uganda, (3)International Institute of Tropical Columbia, MO, (5)Department of Biological Sciences, Purdue University, Agriculture, Ibadan, Nigeria, (4)Cornell University, Ithaca, NY, (5)National West Lafayette, IN Agriculture Research Laboratories, Kampala, Uganda

P1100: Transformation - Even P1103: Transformation - Odd Development of Site-Specific Recombinase Technology for Targeted Overexpression of rpfF from Xylella fastidiosa Induces Less Bacterial Integration with Marker Removal from the Plant Genome Movement and Reduction of Citrus Variegated Chlorosis Symptoms James Thomson, USDA-WRRC, Albany, CA Raquel Caserta1, Reinaldo Rodrigues de Souza-Neto2, Willian Eduardo Lino 3 4 4 5 Pereira , Marco A Takita , Marcos Antonio Machado , Steven E Lindow and Alessandra Alves de Souza4, (1)Centro Apta Citros Sylvio Moreira/IAC, P1101: Transformation - Odd Cordeirópolis, Brazil, (2)Universidade Estadual de Campinas/ Centro de Effects of Different Acetosyringone Concentrations on Transformation of Citricultura Sylvio Moreira, Cordeirópolis, Brazil, (3)Centro Apta Citros RolABCD Genes in Some Citrus Rootstock Through Agrobacterium Sylvio Moreira, Cordeirópolis, Brazil, (4)Centro de Citricultura Sylvio rhizogenes Moreira, IAC, Cordeiropolis, SP, Brazil, (5)University of California Berkeley, Berkeley, CA Dicle Donmez1, Ozhan Simsek2, Tolga Izgu1, Yesim Yalcin Mendi2, Turgut 1 2 Yesiloglu and Yildiz Kacar , (1)Cukurova University, ADANA, Turkey, (2)Department of Horticulture, Faculty of Agriculture, University of Cukurova, P1104: Transformation - Even ADANA, Turkey Generation of the First Cisgenic Fire Blight Resistant Apple Line of the Cultivar 'Gala' Thomas D Kost1, Melanie Jänsch2, Cesare Gessler1, Henryk Flachowsky3, Andrea Patocchi2 and Giovanni AL Broggini1, (1)ETH Zurich, Zurich, Switzerland, (2)Agroscope, Wädenswil, Switzerland, (3)Julius Kühn-Institut, Institute for Breeding Research on Fruit Crops, Dresden, Germany

294 P1105: Bioinformatics: Databases - Odd P1109: Bioinformatics: Databases - Odd From Genes to Genomes – New Features and Data Access dbSNP and dbVar: NCBI Databases of Simple and Structural Variations

Kim D Pruitt1, Terence D Murphy1 and Paul Kitts2, (1)National Center for Lon Phan, Hua Zhang, Mike Kholodov, David Shao, Rama Maiti, Eugene Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, Shekhtman, Juliana Sampson, Qiang Wang, John Lopez, Tim Hefferon, John (2)NIH/NLM/NCBI, Bethesda, MD Garner and Ming Ward, NIH/NLM/NCBI, Bethesda, MD

P1106: Bioinformatics: Databases - Even P1110: Bioinformatics: Databases - Even The European Variation Archive at EMBL-EBI Prometheus: Omics Portal for Comparative Genomics Gary Saunders, European Bioinformatics Institute (EMBL-EBI), Hinxton, Yong-Min Kim, Korea Bioinformation Center, Korea Research Institute of United Kingdom Bioscience and Biotechnology, Daejon, South Korea, Seongjin Park, Korea Research Institute Bioscience and Biotechnology(KRIBB), Daejeon, South Korea, Insu Jang, Korea Research Institute of Bioscience and Biotechnology, P1107: Bioinformatics: Databases - Odd Daejeon, South Korea and Jin Ok Yang, KRIBB, Daejeon, South Korea TM NetAffx Expression Array Comparison Tool: Instantaneous Search of an Expansive Cross-Species Catalog P1111: Bioinformatics: Databases - Odd Stan Trask, Affymetrix, Santa Clara, CA Genotype Investigator for Genome Wide Analysis (GIGwA)

Pierre Larmande, IRD, UMR DIADE, Institut de Biologie Computationnelle, P1108: Bioinformatics: Databases - Even Montpellier, France, Guilhem Sempéré, CIRAD, UMR Intertryp, Montpellier, Manual and Automatic Annotation of Plants and Animals in the UniProt France, Florian Philippe, IRD - UMR DIADE, Montpellier cedex 5, France, Knowledgebase and the Gene Ontology Alexis Dereeper, IRD, UMR RPB, F-34394 Montpellier, France, Manuel Ruiz, CIRAD, UMR AGAP, Institut de Biologie Computationnelle, Montpellier Claire O'Donovan, European Bioinformatics Institute (EMBL-EBI), Hinxton, Cedex 5, France and Gautier Sarah, INRA - UMR AGAP, Montpellier, France United Kingdom

P1112: Bioinformatics: Databases - Even Improving the Flow of Data to NCBI Sequence Repositories, SRA and GenBank Ilene Mizrachi, National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD

P1113: Bioinformatics: Databases - Odd P1116: Bioinformatics: Databases - Even Leveraging iPlant Cyberinfrastructure for a New Data-Driven Research RNA-Seq to Expand Pathway Coverage in the Archosaurs Community Colin Kern, Carl J Schmidt and Liang Sun, University of Delaware, Newark, James Carson1, Eric Dawson1, James E Koltes2, Eric Fritz-Waters2, James M DE 2 3 Reecy and Matt Vaughn , (1)Texas Advances Computing Center, University of Texas, Austin, TX, (2)Department of Animal Science, Iowa State University, Ames, IA, (3)Texas Advanced Computing Center, Austin, TX P1117: Bioinformatics: Databases - Odd An Integrated Annotation Data Warehouse at the Hymenoptera Genome Database P1114: Bioinformatics: Databases - Even The Functional Annotation of Animal Genomes, Data Standards, Aditi Tayal, Deepak R Unni, Colin M Diesh, Darren E Hagen and Christine G Annotation and Sharing Elsik, Division of Animal Sciences, University of Missouri, Columbia, MO

Laura Clarke1, Alan L Archibald2, Paul Flicek1, David Burt2, David Hume2, Douglas Vernimmen2, Mick Watson2, Mario Caccamo3, Matt Clark3, Federica P1118: Bioinformatics: Databases - Even Di-Palma3, David Swarbreck3 and The FAANG Consortium1, (1)European The i5k Workspace@NAL - Enabling Genomic Data Access, Visualization, Molecular Biology Laboratory, Cambridge, United Kingdom, (2)The Roslin and Curation of Arthropod Genomes Institute and R(D)SVS, University of Edinburgh, Midlothian, United Kingdom, 1 1 1 1 (3)The Genome Analysis Centre, Norwich, United Kingdom Monica Poelchau , Christopher Childers , Gary Moore , Vijaya Tsavatapalli , Jay D Evans2, Chien-Yueh Lee3, Han Lin3, Jun-Wei Lin4 and Kevin Hackett5,

(1)USDA/Agricultural Resarch Service/National Agricultural Library, P1115: Bioinformatics: Databases - Odd Beltsville, MD, (2)USDA ARS Bee Research Lab, Beltsville, MD, (3)Graduate Annotation of Laurasiatheria Genomes By National Center for Institute of Biomedical Electronics and Bioinformatics, Taipei, Taiwan, Biotechnology Information (NCBI) (4)Graduate Institute of Electrical Engineering, Taipei, Taiwan, (5)USDA- ARS, Beltsville, MD 1 1 2 Shashikant Pujar , Bhanu Rajput , Francoise Thibaud-Nissen , Terence D Murphy2, Paul Kitts3 and Kim D Pruitt2, (1)NCBI, National Institutes of Health, Bethesda, MD, (2)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (3)NIH/NLM/NCBI, Bethesda, MD

295 P1119: Bioinformatics: Databases - Odd P1122: Bioinformatics: Databases - Even Browsing and Comparing Genomes Using the Gramene/Ensembl Plants Plant Omics Data Center (PODC) : The Integrated Web Repository for Browser Intra- and Interspecies Gene Expression Networks Joshua Stein1, Sharon Wei1, Marcela Karey Monaco1, Andrew Olson1, Sunita Tomoyuki Takano1, Shin Terashima1, Hajime Ohyanagi2, Maasa Kanno3, Kumari1, Jerry Lu1, Joseph Mulvane1, Jim Thomason1, Ken Youens-Clark1, Yohei Sasaki1, Koji Yokoyama2, Koichiro Aya4, Keita Suwabe5, Go Suzuki6, Dan Bolser2, Arnaud Kerhornou3, Paul J Kersey4 and Doreen Ware5, (1)Cold Masao Watanabe7, Makoto Matsuoka4 and Kentaro Yano3, (1)School of Agri, Spring Harbor Laboratory, Cold Spring Harbor, NY, (2)EMBL -The European Meiji University, Kawasaki, Kanagawa, Japan, (2)School of Agri, Meiji Bioinformatics Institute, Hinxton, United Kingdom, (3)EMBL-EBI, University, Kawasaki, Japan, (3)School of Agri, Meiji University, CREST, Cambridge, United Kingdom, (4)EMBL - The European Bioinformatics JST, Kawasaki, Japan, (4)Bioscience and Biotechnology Center, Nagoya Institute, Cambridge, United Kingdom, (5)Cold Spring Harbor University, Nagoya, Japan, (5)Mie University, Tsu, Japan, (6)Osaka Kyoiku Laboratory/USDA-ARS, Cold Spring Harbor, NY University, Kashiwara, Japan, (7)Tohoku University, Sendai, Miyagi, Japan

P1120: Bioinformatics: Databases - Even P1123: Bioinformatics: Databases - Odd National Center for Biotechnology Information Resources for Plant An Ontology Approach to Comparative Phenomics in the Plants: Genomics Arabidopsis, Tomato, Maize, Rice, Soybean and Medicago Brian Smith-White1, Svetlana Iazvovskaia2, Anjana Raina Vatsan1, Terence Lisa Harper1, Anika Oellrich2, Ramona Walls3, Ethalinda Cannon4, Steven B Murphy3, Ilene Mizrachi1, Valerie Schneider1 and Kim D Pruitt1, (1)National Cannon5, Laurel Cooper6, Jack Gardiner4, Georgios Gkoutos7, Mingze He4, Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, Robert Hoehndorf8, Pankaj Jaiswal6, Johnny Lloyd9, Scott R Kalberer5, David (2)NCBI, Bethesda, MD, (3)NIH/NLM/NCBI, Bethesda, MD Meinke10, Naama Menda11, Laura Moore12, Rex Nelson5, Anuradha Pujar13, 14 15 Carolyn J Lawrence and Eva Huala , (1)USDA ARS, Albany, CA, (2)Wellcome Trust Sanger Institute, Hinxton, United Kingdom, (3)The iPlant P1121: Bioinformatics: Databases - Odd Collaborative, Tucson, AZ, (4)Iowa State University, Ames, IA, (5)USDA- Plant Genome Database Japan (PGDBj) in 2015: A Comprehensive ARS-CICGRU, Ames, IA, (6)Department of Botany & Plant Pathology, Database Covering Information of Plant Genome-Related Databases in Oregon State University, Corvallis, OR, (7)Computer Science Department, Japan Aberystwyth University, Aberystwyth, United Kingdom, (8)King Abdullah University of Science & Technology, Thuwal, Saudi Arabia, (9)Michigan State 1 1 2 1 Hisako Ichihara , Erika Asamizu , Akihiro Nakaya , Yasukazu Nakamura , University, East Lansing, MI, (10)Oklahoma State University, Stillwater, OK, 1 1 Hideki Hirakawa and Satoshi Tabata , (1)Kazusa DNA Research Institute, (11)Boyce Thompson Institute for Plant Research, Ithaca, NY, (12)Department Kisarazu, Japan, (2)Osaka University, Osaka, Japan of Botany and Plant Pathology, Oregon State University, Corvallis, OR, (13)Cornell University, Ithaca, NY, (14)Iowa State University, Ames, IA 50011, IA, (15)Phoenix Bioinformatics, Redwood City, CA

P1124: Bioinformatics: Databases - Even P1127: Bioinformatics: Databases - Odd Deploying and Maintaining Large Intermine Implementations: Phytomine Facilitating Efficient Knowledge Management and Discovery in the at Phytozome Agronomic Sciences Joseph W Carlson, Sajeev Batra, Jeremy L Phillips, Richard D Hayes, Aravind Venkatesan, Institut de Biologie Computationnelle, Montpellier, Shengqiang Shu, David M Goodstein and Daniel S Rokhsar, DOE Joint France Genome Institute, Walnut Creek, CA P1128: Bioinformatics: Databases - Even P1125: Bioinformatics: Databases - Odd GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Data Mining in Plant Omics Data Center Suggests Conserved Gene Genetic Association Studies Results Using High Throughput Genotyping Expression Networks of Molecular Chaperone and Protein Disulfide and Phenotyping Data Isomerase Genes in Different Organs Delphine Steinbach1, Guillaume Merceron2, Célia Michotey2, Raphael Flores1, Toru Kudo1, Tomoyuki Takano1, Shin Terashima1, Masaaki Kobayashi1, Nacer Mohellibi1, Cyril Pommier1, Christopher Sauvage3, Stephane Nicolas4, Maasa Kanno1, Kyoko Morimoto1, Hiromi Kanegae1, Soichi Ozaki1, Yohei Pierre Dubreuil5 and Jacques Le Gouis6, (1)INRA - URGI, Versailles, France, Sasaki1, Misa Saito1, Satomi Asano1, Koji Yokoyama1, Koichiro Aya2, Keita (2)INRA URGI, Versailles, France, (3)INRA GAFL, Montfavet, France, Suwabe3, Go Suzuki4, Masao Watanabe5, Makoto Matsuoka2, Hajime (4)INRA UMRGV, Gif sur Yvette, France, (5)Biogemma compagny, Chappes, Ohyanagi1 and Kentaro Yano1, (1)School of Agri, Meiji University, Kawasaki, France, (6)INRA GDEC, clermont ferrand, France Japan, (2)Bioscience and Biotechnology Center, Nagoya University, Nagoya, Japan, (3)Mie University, Tsu, Japan, (4)Osaka Kyoiku University, Kashiwara, Japan, (5)Tohoku University/Life Sciences, Sendai, Japan P1129: Bioinformatics: Databases - Odd KDDart Platform for Data Integration in Pre-Breeding, Breeding and Ecology P1126: Bioinformatics: Databases - Even Gene Family Construction and Ortholog Determination in Phytozome Grzegorz Uszynski, Puthick Hok, Brian Pierce, David Hunter, Aneal Chandra, Stanley Wijoyo, Manil Chaudhary, Brad Lanham, Frank Detering, Krzysztof Jeremy L Phillips, Joseph W Carlson, Sajeev Batra, David M Goodstein and Kurczynski and Andrzej Kilian, Diversity Arrays Technology Pty Ltd (DArT Daniel S Rokhsar, DOE Joint Genome Institute, Walnut Creek, CA PL), Canberra, Australia

296 P1130: Bioinformatics: Databases - Even P1133: Bioinformatics: Databases - Odd TAIR as a Model for Database Sustainability In silico Studies on Crk Genes in Different Plant Species - Arabidopsis, Populus Etc Eva Huala1, Donghui Li1, Tanya Z Berardini1,2 and Robert Muller1, (1)Phoenix Bioinformatics, Redwood City, CA, (2)Phoenix Bioinformatics, Stanford, CA Pawel Burdiak, Department of Plant Breeding, Genetics and Biotechnology; Warsaw University of Life Sciences, Warsaw, Poland, Aleksia Vaattovaara, Department of Biosciences; University of Helsinki, Helsinki, Finland, Michael P1131: Bioinformatics: Databases - Odd Wrzaczek, Department of Biosciences, University of Helsinki, Helsinki, DNA Polymorphism Database from New-Generation Sequence Read Finland and Stanislaw Karpinski, Warsaw University of Life Sciences, Archive and Analytical Workflow Warsaw, Poland

1 1 1 Takako Mochizuki , Yasuhiro Tanizawa , Takatomo Fujisawa , Naruo Nikoh2, Atsushi Toyoda3, Asao Fujiyama3, Nori Kurata4, Hideki Nagasaki1, P1134: Bioinformatics: Databases - Even 5 1 1 Tokurou Shimizu , Eli Kaminuma and Yasukazu Nakamura , (1)Genome PlabiPD - Leveraging Big Data for Plant Research Informatics Laboratory, NIG, ROIS, Shizuoka, Japan, (2)Liberal Arts, OUJ, Chiba, Japan, (3)Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Marie E Bolger, forschungszentrum jülich, jülich, Germany, Rainer Schwacke, Japan, (4)Plant Genetics Laboratory, National Institue of Genetics, Shizuoka, forschungszentrum jülich, Juelich, Germany and Bjorn Usadel, Japan, (5)NARO Institute of Fruit Tree Science, Shizuoka, Japan Forschungzentrum Juelich & RWTH Aachen, Aachen, Germany

P1132: Bioinformatics: Databases - Even P1135: Bioinformatics: Databases - Odd Grass Genomes in Ensembl Plants CyMSatDB: The Globe Artichoke (Cynara cardunculus var scolymus) Microsatellite Database Paul J Kersey, EMBL - The European Bioinformatics Institute, Cambridge, United Kingdom Ezio Portis1, Flavio Portis2, Luisa Valente2, Silvia Gianoglio1, Fabio Cericola3, 1 1 Sergio Lanteri and Alberto Acquadro , (1)DISAFA - Plant Genetics and Breeding, University of Torino, Grugliasco (Torino), Italy, (2)Yebokey – User Experience Design and Web Development, Torino, Italy, (3)Molecular Biology and Genetics, Aarhus University, Tjele, Denmark

P1136: Bioinformatics: Databases - Even P1139: Bioinformatics: Software - Odd The Construction of Genome Annotation Database for Liverwort ampliconDIVider: Detection of CRISPR-Induced Variants in PCR Amplicons - Zebrafish Hideki Nagasaki, Genome Informatics Laboratory, NIG, ROIS, Mishima, Shizuoka, Japan Matthew C LaFave, National Human Genome Research Institute, NIH, Bethesda, MD P1137: Bioinformatics: Software - Odd miRseqViewer: Multi-panel visualization of sequence, structure and P1140: Bioinformatics: Software - Even expression for analysis of microRNA sequencing data POTION: An End-to-End Pipeline for Positive Darwinian Selection

1 2 3 3 Detection in Genomic Scale Data through Phylogenetic Comparison of Insu Jang , Seongjin Park , Jin Ok Yang and Byungwook Lee , (1)Korea Protein-Coding Genes Research Institute of Bioscience and Biotechnology, Daejeon, South Korea, (2)Korea Research Institute Bioscience and Biotechnology(KRIBB), Daejeon, Jorge A Hongo, Unicamp - University of Campinas, campinas, Brazil and South Korea, (3)KRIBB, Daejeon, South Korea Francisco P Lobo, Embrapa Informática Agropecuária, Campinas, SP, Brazil

P1138: Bioinformatics: Software - Even P1141: Bioinformatics: Software - Odd The DOE Systems Biology Knowledgebase: Progress Toward a System for A GUI Application "CA Plot Viewer" for Large-Scale Gene Expression Collaborative and Reproducible Inference and Modeling of Biological Analysis with Next-Generation Sequencing Technology Function in Plant Research Kentaro Yano, Tomoyuki Takano, Shin Terashima and Yukino Nakamura, Robert W Cottingham1, Doreen Ware2, Dave Weston1, James Gurtowski3, Fei School of Agri, Meiji University, Kawasaki, Japan 4 5 3 6 3 He , Rashmi Jain , Vivek Kumar , Sunita Kumari , Srividya Ramakrishnan , Priya Ranjan7, Samuel M D Seaver8, Jim Thomason3, Shinjae Yoo4, Christopher Henry9, Pamela Ronald10, Michael Schatz3, Sergei Maslov4, Rick P1142: Bioinformatics: Software - Even Stevens8 and Adam Arkin11, (1)Oak Ridge National Laboratory, Oak Ridge, Sequence Viewer and Genome Workbench - Sequence Display and TN, (2)Cold Spring Harbor Laboratory/USDA-ARS, Cold Spring Harbor, NY, Analysis Tools for Eukaryotes and Prokaryotes (3)Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, (4)Brookhaven 1 2 3 2 National Laboratory, Upton, NY, (5)UC-Davis, Davis, CA, (6)Cold Spring Kim D Pruitt , Robert Falk , Michael DiCuccio , Terence Murphy and 3 Harbor Laboratory, West Lafayette, IN, (7)Oak Ridge National Laboratory; Anatoliy Kuznetsov , (1)National Center for Biotechnology Information University of Tennessee, Oak Ridge, TN, (8)Argonne National Laboratory, (NCBI/NLM/NIH), Bethesda, MD, (2)NIH/NLM/NCBI, Bethesda, MD, Argonnne, IL, (9)Argonne National Laboratory, Argonne, IL, (10)University of (3)National Center for Biotechnology Information, Bethesda, MD California, Davis, Davis, CA, (11)Lawrence Berkeley National Laboratory, Berkeley, CA

297 P1143: Bioinformatics: Software - Odd P1147: Bioinformatics: Software - Odd DNA Subway Yellow and Blue Lines: TEs, Gene Discovery and DNA Exploring the Structural Basis of the Genotype and Phenotype Barcoding Relationship with Public Data and Molecule WorldTM on the iPad James Burnette, University of California, Riverside, Riverside, CA Todd Smith and Sandra Porter, Digital World Biology, Seattle, WA

P1144: Bioinformatics: Software - Even P1148: Bioinformatics: Software - Even Analysing SNP Consequences on Genes and Proteins with Ensembl's SOGO: A Novel Research Framework for Crop and Livestock Genome Variant Effect Predictor Studies

Emily Perry, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Koji Doi1, Elena Solovieva1, Yumiko Teramoto1, Tomomi Ishikawa1, Hiroshi Kingdom Yasue1, Akitoshi Goto2 and Akio Miyao1, (1)National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan, (2)NARO Institute of Crop Science, Tsukuba, Ibaraki, Japan P1145: Bioinformatics: Software - Odd

Geneious R8: A Bioinformatics Platform for Biologists P1149: Bioinformatics: Software - Odd Christian Olsen1, Kashef Qaadri1, Richard Moir2, Matt Kearse2, Simon 2 2 2 2 Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis Buxton , Matthew Cheung , Jonas Kuhn , Steven Stones-Havas and Chris in Multiple Organisms Duran2, (1)Biomatters, Inc, Newark, NJ, (2)Biomatters, Ltd, Auckland, New Zealand Michael T Lovci, Olga B Botvinnik, Patrick Liu, Boyko Kakaradov, Leen Jamal Schafer, Yan Song and Gene W Yeo, University of California, San Diego, La Jolla, CA P1146: Bioinformatics: Software - Even

Merging Data for Correlation and Network-Based Analysis Using GeneSpring 13 P1150: Bioinformatics: Software - Even fRNAkenstein: A Web-Based Interface for a Robust RNA Seq Analysis Dipa Roy Choudhury, Strand Scientific Intelligence, SAN FRANCISCO, CA and Antoni Wandycz, Agilent Technologies, Santa Clara, CA Allen Hubbard, Wayne Treible, Richard VN Davis and Carl J Schmidt, University of Delaware, Newark, DE

P1151: Bioinformatics: Software - Odd P1155: Bioinformatics: Software - Odd A Comparison of Transcript Discovery with Different de novo Assembly LAILAPS and e!DAL: Explore Genome Annotations and Publish Software Tools Research Data Le-Shin Wu, NCGAS, Indiana University, Bloomington, IN and Keithanne Uwe Scholz, Daniel Arend, Jinbo Chen, Christian Colmsee, Maria Esch and Mockaitis, Department of Biology, Indiana University, Bloomington, IN Matthias Lange, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany P1152: Bioinformatics: Software - Even Blast2GO Revisited: State of the Art in Functional Annotation and P1156: Bioinformatics: Software - Even Analysis of Non-Model Organisms Resources for Advanced Bioinformaticians Working in Plant and Animal Genomes with SMRT Sequencing Stefan Götz, BioBam Bioinformatics SL, Valencia, Spain Joseph Karalius, Pacific Biosciences, Menlo Park, CA P1153: Bioinformatics: Software - Odd GenSAS: A Web-Based Platform for Automated and Manual Curation of P1157: Bioinformatics: Software - Odd Genomic Sequence An Application Programming Interface (API) for Programmable Access to Animal QTLdb Stephen P Ficklin1, Taein Lee1, Jodi L Humann1, Chun-Huai Cheng1, Jill Wegrzyn2, David Neale3 and Dorrie Main1, (1)Washington State University, Zhiliang Hu1, James E Koltes1, Eric Fritz-Waters1, Carissa Park2 and James M Pullman, WA, (2)University of Connecticut, Storrs, CT, (3)Dept Plant Sciences Reecy1, (1)Department of Animal Science, Iowa State University, Ames, IA, University of California, Davis, CA (2)Iowa State University, Ames, IA

P1154: Bioinformatics: Software - Even P1158: Bioinformatics: Software - Even WebApollo 20: A Scalable, Distributed Sequence Annotation Editor for FarmCPU: An R Package of Genome-Wide Association Study for Big Data Multiple Genomes Xiaolei Liu1, Bin Fan1, Edward S Buckler2 and Zhiwu Zhang3, (1)Huazhong Nathan A Dunn1, Monica C Munoz-Torres2, Colin Diesh3, Deepak Unni4, Agricultural University, Wuhan, China, (2)Institute for Genomic Diversity, Christine G Elsik4, Ian Holmes5 and Suzanna Lewis1, (1)Berkeley Cornell University, Ithaca, NY, (3)Washington State University, Pullman, WA Bioinformatics Open-source Projects, Berkeley, CA, (2)Lawrence Berkeley National Laboratory, Walnut Creek, CA, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)S134D Animal Science Research Center, Columbia, MO, (5)Department of Bioengineering, Berkeley, CA

298 P1159: Bioinformatics: Software - Odd P1162: Bioinformatics: Software - Even Automated de novo Transcriptome Analysis of Eukaryotic Organisms Dealing with Statistical Interactions in Plant Breeding within the LABKEY Software Andrea Waksmunski1, Tessa Pierce2 and Terry Gaasterland2, (1)Juniata College, Huntingdon, PA, (2)University of California - San Diego and Scripps Julie Soula1, Sébastien Bardet1, Patrick Vincourt2, Jean-Marc Bernard3 and Institution of Oceanography, La Jolla, CA Frédéric Royer3, (1)DORIANE Research Software and Services, Nice, France, (2)Open-Source-Biology, Toulouse, France, (3)Biosearch Data Management, Nice, France P1160: Bioinformatics: Software - Even solGS: A Web-Based Tool for Genomic Selection P1163: Bioinformatics: Software - Odd Isaak Y Tecle, Naama Menda and Lukas Mueller, Boyce Thompson Institute BioGPU: A High Computation Performance Tool for Genome-Wide for Plant Research, Ithaca, NY Association Study

Meng Huang, Washington State University, Pullman, WA P1161: Bioinformatics: Software - Odd

A Comprehensive Method and Tool for Identifying Conserved Cis- Element Motifs on the Basis of Large-Scale Gene Expression and Sequence P1164: Bioinformatics: Software - Even Data Improving the Alternative Splicing Annotation of Plant Genomes Yohei Sasaki1, Kentaro Yano1, Hajime Ohyanagi1, Tomoyuki Takano1, Li Song, Johns Hopkins University, Baltimore, MD and Liliana Florea, Johns Masaaki Kobayashi1, Shin Terashima1, Naoki Yamamoto1, Masato Otani2 and Hopkins University School of Medicine, Baltimore, MD 3 Eiji Nambara , (1)School of Agri, Meiji University, Kawasaki, Kanagawa, Japan, (2)Sch of Cell & Systems Biology,Toronto Univ, Toronto, ON, Canada, (3)Dept of Cell & Systems Biology, University of Toronto, Toronto, ON, P1165: Bioinformatics: Software - Odd Canada An Elegant Solution to Automate Data Analysis for Axiom® Genotyping Arrays MariEllen Cottman, Jae Brodsky, Ali Pirani, Kevin Leung, Breck Ohlson, Sangitaq Patil, Raymond Wheeler, Anthony Kosky, David Le, Najeeb Hashmi, Thy Hoang, Fue Thao, Richard Sating, Vlad Libershteyn and John Burrill, Affymetrix, Inc, Santa Clara, CA

P1166: Bioinformatics: Software - Even P1170: Bioinformatics: Algorithms - Even Heap: A SNPs Detection Tool for NGS Data with Special Reference to Java Merging Copy Number Variants (JM-CNV): A New Algorithm for GWAS and Genomic Prediction Identifying Copy Number Variant Regions (CNVR) Masaaki Kobayashi1, Hajime Ohyanagi1, Hideki Takanashi2, Atsushi J Joaquim Manoel da Silva, Universidade do Estado de Mato Grosso, Nova Nagano3, Hitoshi Tainaka2, Tsuyoshi Tokunaga4, Takashi Sazuka5, Hiroyoshi Xavantina, Brazil, Alan Roberto Romaniuc, Embrapa Informática Iwata2, Nobuhiro Tsutsumi2 and Kentaro Yano1, (1)School of Agriculture, Agropecuária – Laboratório Multiusuário de Bioinformática, Campinas, Brazil, Meiji University, CREST, JST, Kawasaki, Kanagawa, Japan, (2)Agricultural Alexandre R Caetano, Embrapa Recursos Genéticos e Biotecnologia, Brasilia, and Life Sci, The Univ of Tokyo, CREST, JST, Tokyo, Japan, (3)Center for DF, Brazil, Poliana F Giachetto, Embrapa Informática Agropecuária, Ecological Research, Kyoto Univ, PRESTO, JST, Otsu, Japan, (4)Earth Note Campinas, SP, Brazil and Michel E Beleza Yamagishi, Embrapa Informática Co Ltd, CREST, JST, Nago, Japan, (5)Nagoya Univ, CREST, JST, Nagoya, Agropecuária, Campinas, SAO PAULO, Brazil Japan P1171: Bioinformatics: Algorithms - Odd P1167: Bioinformatics: Software - Odd An Improved Assembly Algorithm for de novo Circular Genome Circular RNA Detection in the Transcriptomes of Various Species Reconstruction

Lennart Opitz and Catharine Aquino Fournier, Functional Genomics Center Christian Olsen1, Kashef Qaadri1, Richard Moir2, Matt Kearse2, Simon Zurich, ETH/UZH, Zurich, Switzerland Buxton2, Matthew Cheung2, Jonas Kuhn2, Steven Stones-Havas2 and Chris 2 Duran , (1)Biomatters, Inc, Newark, NJ, (2)Biomatters, Ltd, Auckland, New Zealand P1168: Bioinformatics: Software - Even

Improving Maker Gene Annotations in Grasses through the Use of GC Specific Hidden Markov Models P1172: Bioinformatics: Algorithms - Even Right-Hand-Side Updating Enables Genomic Prediction with Millions of Megan J Bowman and Kevin L Childs, Michigan State University, East SNPs Lansing, MI 1 1 2 Mario PL Calus , Rianne van Binsbergen , Marzieh Heidaritabar , Chris Schrooten3 and Roel F Veerkamp1, (1)Animal Breeding and Genomics Centre, P1169: Bioinformatics: Algorithms - Odd Wageningen UR Livestock Research, Wageningen, Netherlands, (2)Animal Fusion Gene Detection with Soft-Clipping Reads from Exome Sequencing Breeding and Genomics Centre, Wageningen University, Wageningen, Data Netherlands, (3)CRV BV, Arnhem, Netherlands

Jin Ok Yang, KRIBB, Daejeon, South Korea

299 P1173: Bioinformatics: Algorithms - Odd P1177: Bioinformatics: Algorithms - Odd Heuristic Exploitation of Genetic Structure in Marker-Assisted Gene Fast and Deterministic Linkage Mapping of Polyploids Using an Pyramiding Problems Approximate Calculation of Recombination Frequencies Herman De Beukelaer1, Geert De Meyer2 and Veerle Fack1, (1)Ghent Fabian Grandke, Genetwister Technologies BV, Wageningen, Netherlands University, Ghent, Belgium, (2)Bayer CropScience NV, Diegem, Belgium P1178: Bioinformatics: Algorithms - Even P1174: Bioinformatics: Algorithms - Even Recovering Power in Association Mapping Panels with Variable Levels of Relative Efficacy of GWAS Models for Ordinal Variables Linkage Disequilibrium Lucia Gutierrez, College of Agriculture - UDELAR, Montevideo, Uruguay, Renaud Rincent, INRA, Versailles, France Agustin Gonzalez-Reymundez, College of Agriculture, Universidad de la Republica - Uruguay, Montevideo, Uruguay and Ariel Castro, College of Agriculture - UDELAR, Paysandu, Uruguay P1179: Bioinformatics: Algorithms - Odd EM-Based Bayesian Multinomial Logistic Regression for Unordered Multiple Categories with High-Dimensional Genomic Data P1175: Bioinformatics: Algorithms - Odd Locally Epistatic Genomic Relationship Matrices for Genomic Association Takeshi Hayashi, NARO Agricultural Research Center (NARC), Tsukuba, and Prediction Japan and Hiroyoshi Iwata, The University of Tokyo, Tokyo, Japan

Deniz Akdemir, Cornell University, Ithaca, NY P1180: Bioinformatics: Algorithms - Even

Mixed Model Approach for Genotypic Imputation P1176: Bioinformatics: Algorithms - Even Multi-Allelic Haplotype Model to Integrate Functional Genomic Alencar Xavier, Katy Martin Rainey and William Muir, Purdue University, Information with Genomic Prediction and Variance Component West Lafayette, IN Estimation Yang Da1, Chunkao Wang1, Cheng Tan1, Dzianis Prakapenka1, Miku Shigematsu1, John Garbe2 and Li Ma3, (1)Department of Animal Science, University of Minnesota, Saint Paul, MN, (2)Minnesota Supercomputer Institute, University of Minnesota, Minneapolis, MN, (3)Department of Animal and Avian Sciences, University of Maryland, College Park, MD

P1181: Bioinformatics: Algorithms - Odd P1184: Bioinformatics: Algorithms - Even Separating DIP-Seq Signals through Independent Component Analysis - MAAB: A Motif and Amino-Acid Bias Pipeline to Identify Both Arabidopsis thaliana Intrinsically Disordered and Repetitive Hydroxyproline-Rich Glycoproteins (HRGPs) in 1000 Plant Transcriptomes Greg Zynda1, Jawon Song2, Emily Markham3, Matt Vaughn2 and Linda Hanley-Bowdoin4, (1)Texas Advanced Computing Center - University of Andrew M Cassin1, Kim L Johnson1, Monika S Doblin1, Andrew Lonsdale1, Texas, Austin, TX, (2)Texas Advanced Computing Center, Austin, TX, Antony Bacic1 and Carolyn J Schultz2, (1)The University of Melbourne, (3)North Carolina State University, Raleigh, NC, (4)NC State University, Parkville, Australia, (2)The University of Adelaide, Glen Osmond, Australia Raleigh, NC P1185: Bioinformatics: Algorithms - Odd P1182: Bioinformatics: Algorithms - Even Assessing Allelic Configuration Models in Fixed Ploidy Variant Calling The DNA Integrity Number: A Novel Approach for Objective Integrity Using R Classification of Genomic DNA Samples Jasmin Zohren1, Igor Kardaisky2, Kare Lehmann Nielsen3, Anika Joecker2 Solange Borg1, Melissa Huang Liu1, Barry McHoull2, Marcus Gassmann3, and Richard Buggs1, (1)Queen Mary University of London, London, United Adam Inche2, Isabell Pechtl4 and Eva Schmidt5, (1)Agilent Technologies, La Kingdom, (2)Qiagen Aarhus, Aarhus C, Denmark, (3)Aalborg University, Jolla, CA, (2)Agilent Technologies, Edinburgh, United Kingdom, (3)Agilent Aalborg, Denmark Technologies, Inc, Waldbronn, Germany, (4)Agilent Technologies, 76337, Germany, (5)Agilent Technologies, Waldbronn, Germany P1186: Bioinformatics: Algorithms - Even

Detection and Characterization of Copy Number Variations and Complex P1183: Bioinformatics: Algorithms - Odd Genomic Rearrangements in Human Subjects Using Nanochannel Genome A Workflow for the Analysis of Contigs from the Metagenomic Shotgun Mapping Technology Assembly of SMRT® Sequencing Data Zeljko J Dzakula, Warren Andrews, Ernest Lam, Thomas Anantharaman, Richard Hall1, Meredith Ashby1, Brett Bowman1, Cheryl Heiner1, Sudeep Alex Hastie and Han Cao, BioNano Genomics, San Diego, CA 2 2 2 2 Mehrotra , Nicoleta Juretic , Jessica Wasserscheid and Ken Dewar , (1)Pacific Biosciences, Menlo Park, CA, (2)McGill University, Montreal, QC, Canada P1187: Bioinformatics: Algorithms - Odd

Bayesian Multi-Trait Methods for Genome-Wide Association and Prediction Experiments of Arbitrary Complexity Anthony Greenberg, Jason Mezey, Susan McCouch and Jean-Luc Jannink, Cornell University, Ithaca, NY

300 P1188: Bioinformatics: Algorithms - Even P1192: Bioinformatics: Algorithms - Even Characterization of an Integrative Model for Candidate Gene Selection Inferring the Population Size History of 4 Cattle Breeds Using NGS Data from Genomic Data with Simulated Data Analysis and an Approximate Bayesian Computation Approach Brian Sayre1, Ornogeah Wurah1 and James M Reecy2, (1)Virginia State Simon Boitard, INRA, Jouy en Josas, France University, Petersburg, VA, (2)Department of Animal Science, Iowa State University, Ames, IA P1193: Bioinformatics: Algorithms - Odd

Enrichment of Statistical Power for Genome-Wide Association Studies P1189: Bioinformatics: Algorithms - Odd 1 2 3 4 1 Multivariome Analysis Platform Meng Li , Xiaolei Liu , Peter Bradbury , Jianming Yu , Yuan-Ming Zhang , Rory Todhunter5, Edward S Buckler6 and Zhiwu Zhang7, (1)Nanjing Christiaan Biemond1, Antoine Janssen1, Erwin Datema1, Uwe Thissen1 and Agricultural University, Nanjing, China, (2)Huazhong Agricultural University, Roeland van Ham2, (1)KeyGene, Wageningen, Netherlands, (2)KeyGene NV, Wuhan, China, (3)Cornell University/USDA-ARS, Ithaca, NY, (4)Kansas State Wageningen, Netherlands University, Manhattan, KS, (5)Cornell University, Ithaca, NY, (6)Institute for Genomic Diversity, Cornell University, Ithaca, NY, (7)Washington State University, Pullman, WA P1190: Bioinformatics: Algorithms - Even

Network-Based Analysis for Large Soil Microbial Genomics Data P1194: Bioinformatics: Algorithms - Even Erliang Zeng, University of South Dakota, Vermillion, SD Using LTC Software for Physical Mapping and Assisting in Sequence Assembly P1191: Bioinformatics: Algorithms - Even Zeev M Frenkel1, Vladimir A Glikson2 and Abraham B Korol1, (1)Institute of Composite Hypothesis Testing of Differential Gene Expression Based on Evolution, University of Haifa, Haifa, Israel, (2)MultiQTL Ltd, Haifa, Israel Poisson Models: A Validation Study and Some Considerations Xiao-Lin Wu, Neogen/GeneSeek, Lincoln, NE, Keyi Wu, Cornell University, Ithaca, NY and Zhihua Jiang, Washington State University, Pullman, WA

301 C01: Computer Demo 1 C04: Computer Demo 1 The European Variation Archive at EMBL-EBI Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tools

Gary Saunders, European Bioinformatics Institute (EMBL-EBI), Hinxton, 1 2 3 2 United Kingdom Kim D Pruitt , Robert Falk , Michael DiCuccio , Terence Murphy and Anatoliy Kuznetsov3, (1)National Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (2)NIH/NLM/NCBI, Bethesda, MD, C02: Computer Demo 1 (3)National Center for Biotechnology Information, Bethesda, MD WebApollo 20: A Scalable, Distributed Sequence Annotation Editor

1 2 3 4 C05: Computer Demo 1 Nathan A Dunn , Monica C Munoz-Torres , Colin Diesh , Deepak Unni , Christine G Elsik4, Ian Holmes5 and Suzanna Lewis1, (1)Berkeley Analysing SNP Consequences on Genes and Proteins with Ensembl's Bioinformatics Open-source Projects, Berkeley, CA, (2)Lawrence Berkeley Variant Effect Predictor National Laboratory, Walnut Creek, CA, (3)Division of Animal Sciences, University of Missouri, Columbia, MO, (4)S134D Animal Science Research Emily Perry, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Center, Columbia, MO, (5)Department of Bioengineering, Berkeley, CA Kingdom

C03: Computer Demo 1 C06: Computer Demo 1 GenSAS: A Web-Based Platform for Automated and Manual Curation of Genomicus: Fast and Intuitive Comparative Genomics in Plant and Genomic Sequence Animal Genome 1 1 2 1 1 1 1 Alexandra Louis , Thi Thuy Nga Nguyen , Matthieu Muffato and Hugues Stephen P Ficklin , Taein Lee , Jodi L Humann , Chun-Huai Cheng , Jill 3 Wegrzyn2, David Neale3 and Dorrie Main1, (1)Washington State University, Roest Crollius , (1)IBENS Paris, Paris, France, (2)EBI, Cambridge, United Pullman, WA, (2)University of Connecticut, Storrs, CT, (3)Dept Plant Sciences Kingdom, (3)Ecole Normale Supérieure, Institute of Biology (IBENS), Paris, University of California, Davis, CA France

C07: Computer Demo 1 BamBam: Genome Sequence Analysis Tools for Biologists Justin T Page, Zach S Liechty, Mark D Huynh and Joshua A Udall, Brigham Young University, Provo, UT

C08: Computer Demo 2 C11: Computer Demo 2 New Tools for Manual Genome Annotation in Eukaryotes: Methods for Collecting, Integrating, and Displaying Complex Genetic Zmap/Otterlace and Vega Data, Using the Legume Information System and PeanutBase Toby Hunt, Jane Loveland and Jennifer Harrow, Wellcome Trust Sanger Steven B Cannon1, Andrew D Farmer2, Scott R Kalberer1, Jugpreet Singh3, Institute, Cambridge, United Kingdom Ethalinda Cannon4, Pooja E Umale5, Hrishikesh Lokhande6, Alan Cleary6, 1 4 7 Nathan T Weeks , Vijay Karingula and Sudhansu Dash , (1)USDA-ARS- CICGRU, Ames, IA, (2)National Center for Genome Resources, Santa Fe, NM, C09: Computer Demo 2 (3)ORISE Fellow, USDA-ARS-CICGRU, Ames, IA, (4)Iowa State University, The Triticeae Toolbox (T3): From the Ground Up Ames, IA, (5)The National Center for Genome Resources, Santa Fe, NM, (6)NCGR, Santa Fe, NM, (7)Virtual Reality Application Center, Ames, IA Victoria Carollo Blake1, David E Matthews2, Clay Birkett3, David Hane4 and 3 Jean-Luc Jannink , (1)USDA ARS WRRC, Albany, CA, (2)USDA ARS, Ithaca, NY, (3)USDA-ARS, Ithaca, NY, (4)University of California / USDA- C12: Computer Demo 2 ARS-WRRC, Albany, CA Facilitating the Use of Next-Gen Sequence Data for Data-Driven Biology

Tazro Ohta, Hiromasa Ono, Yuki Naito, Takeru Nakazato and Hidemasa C10: Computer Demo 2 Bono, Database Center for Life Science, Mishima, Japan The Reinvention of MaizeGDB Carson M Andorf1, Ethalinda Cannon2, John Portwood1, Abhinav Vinnakota2, C13: Computer Demo 2 2 3 4 5 Venkatanaga Sribalusu , Lisa Harper , Mary Schaeffer , Jack Gardiner , How to Use GDR, the Genome Database for Rosaceae Bremen M Braun6, Darwin Campbell2, Jacqueline Richter2, Wimalanathan (Gokul) Kokulapalan2, Taner Z Sen7 and Carolyn J Lawrence8, (1)USDA-ARS, Sook Jung1, Stephen P Ficklin1, Taein Lee1, Chun-Huai Cheng1, Anna Ames, IA, (2)Iowa State University, Ames, IA, (3)USDA ARS, Albany, CA, Blenda2, Jing Yu1, Ping Zheng1, Sushan Ru1, Cameron Peace1, Katherine M (4)USDA ARS and University of Missouri, Columbia, MO, (5)Plant Genomics Evans3, Nnadozie Oraguzie4, Lisa DeVetter1, Albert G Abbott5, Ksenija Gasic5, Outreach Consortium, Tucson, AZ, (6)MaizeGDB, Ames, IA, (7)USDA -ARS Mercy Olmstead6 and Dorrie Main1, (1)Washington State University, Pullman, /Iowa State University, Ames, IA, (8)Iowa State University, Ames, IA 50011, WA, (2)Genetics and Biochemistry, Clemson University, Clemson, SC, IA (3)Washington State University, Wenatchee, WA, (4)Washington State University, Prosser, WA, (5)Clemson University, Clemson, SC, (6)University of Florida, Gainesville, FL

302 C14: Computer Demo 2 C17: Computer Demo 3 CottonGen: The Community Database for Cotton Genomics, Genetics and Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B Breeding Research Thomas Letellier1, Loic Couderc1, Frederic Choulet2, Manuel Spannagl3, Cyril Jing Yu1, Sook Jung1, Chun-Huai Cheng1, Stephen P Ficklin1, Taein Lee1, Ping Pommier1, Josep Lluis Gelpi Buchaca4, Paul J Kersey5, Hadi Quesneville1, Zheng1, Don C Jones2, Richard G Percy3 and Dorrie Main1, (1)Washington Delphine Steinbach1 and Michael Alaux1, (1)INRA - URGI, Versailles, France, State University, Pullman, WA, (2)Cotton Incorporated, Cary, NC, (3)USDA- (2)INRA GDEC, Clermont-Ferrand, France, (3)Institute of Bioinformatics & ARS, Southern Plains Agricultural Research Center, College Station, TX Systems Biology, MIPS, Neuherberg, Germany, (4)Universitat de Barcelona, Barcelona, Spain, (5)EMBL - The European Bioinformatics Institute, Cambridge, United Kingdom C15: Computer Demo 3

GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping C18: Computer Demo 3 and Phenotyping Data Using the Wheat Tilling Database to Search Mutants of Interest

Delphine Steinbach1, Guillaume Merceron2, Célia Michotey2, Raphael Flores1, Hans Vasquez-Gross1, Ksenia Krasileva2, Francine Paraiso2, Xiaodong Nacer Mohellibi1, Cyril Pommier1, Christopher Sauvage3, Stephane Nicolas4, Wang2, Tyson R Howell2, Paul C Bailey3, Sarah Ayling3, Cristobal Uauy4 and Pierre Dubreuil5 and Jacques Le Gouis6, (1)INRA - URGI, Versailles, France, Jorge Dubcovsky2, (1)Department of Plant Sciences, University of California, (2)INRA URGI, Versailles, France, (3)INRA GAFL, Montfavet, France, Davis, Davis, CA, (2)University of California Davis, Davis, CA, (3)The (4)INRA UMRGV, Gif sur Yvette, France, (5)Biogemma compagny, Chappes, Genome Analysis Centre, Norwich, United Kingdom, (4)John Innes Centre, France, (6)INRA GDEC, clermont ferrand, France Norwich, England

C16: Computer Demo 3 C19: Computer Demo 3 HRGRN: A Graph Search-Empowered Integrative Database of TreeGenes and CartograTree: Tools for Forest Tree Genomics Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks Emily Grau, UC Davis, Davis, CA, Hans Vasquez-Gross, University of California Davis, Davis, CA, John Liechty, Department of Plant Sciences, Xinbin Dai, Jun Li, Tingsong Liu and Patrick Xuechun Zhao, The Samuel University of California, Davis, Davis, CA, Jacob Zieve, University of Roberts Noble Foundation, Ardmore, OK California, Davis, Davis, CA, Damian Gessler, University of Arizona, Santa Fe, AZ, David Neale, Dept Plant Sciences University of California, Davis, CA and Jill Wegrzyn, Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT

C20: Computer Demo 3 C23: Computer Demo 3 LegumeIP - an Integrative Platform to Study Gene Function and Genome Using the Arabidopsis Information Portal Evolution in Legumes: Year 3 Update Jason R Miller1, Chia-Yi Cheng1, Benjamin D Rosen1, Vivek Krishnakumar1, Jun Li, Xinbin Dai and Patrick Xuechun Zhao, The Samuel Roberts Noble Erik Ferlanti1, Svetlana Karamycheva1, Maria Kim1, Matt Hanlon2, Walter Foundation, Ardmore, OK Moreira2, Steve Mock2, Joe Stubbs2, Rion Dooley2, Sergio Contrino3, Julie 3 3 3 2 Sullivan , Alex Kalderimis , Gos Micklem , Matt Vaughn and Christopher D Town1, (1)J Craig Venter Institute, Rockville, MD, (2)Texas Advanced C21: Computer Demo 3 Computing Center, Austin, TX, (3)Cambridge University, Cambridge, England National Center for Biotechnology Information Resources for Plant Genomics C24: Computer Demo 4 Brian Smith-White1, Svetlana Iazvovskaia2, Anjana Raina Vatsan1, Terence 3 1 1 1 Bioinformatic Analysis of Genotype By Sequencing (GBS) Data with Murphy , Ilene Mizrachi , Valerie Schneider and Kim D Pruitt , (1)National NGSEP Center for Biotechnology Information (NCBI/NLM/NIH), Bethesda, MD, (2)NCBI, Bethesda, MD, (3)NIH/NLM/NCBI, Bethesda, MD Claudia Samantha Perea de La Torre, Juan Fernando De-la-Hoz, Juan Camilo Quintero, Daniel F Cruz and Jorge A Duitama Castellanos, International Center for Tropical Agriculture (CIAT), Cali, Colombia C22: Computer Demo 3

Manage Complex Computations Using Clouds and Containers in iPlant Atmosphere C25: Computer Demo 4 Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis Nirav Merchant, iPlant Collaborative/University of Arizona, Tucson, AZ, Eric Lyons, University of Arizona, Tucson, AZ and Edwin Skidmore, University of Michael T Lovci, Olga B Botvinnik, Patrick Liu, Boyko Kakaradov, Leen Arizona-iPlant Collaborative, Tucson, AZ Jamal Schafer, Yan Song and Gene W Yeo, University of California, San Diego, La Jolla, CA

C26: Computer Demo 4 The STATegra NGS Experiment Management System Ana Conesa, Centro Investigacion Principe Felipe, Valencia, Spain

303 C27: Computer Demo 4 "Roll" Your Own Genomics Cluster with Rocks and the XSEDE- Compatible Basic Cluster Jeremy Fischer, Barbara L Hallock and Carrie L Ganote, Indiana University, Bloomington, IN

C28: Computer Demo 4 BioGPU: A High Performance Computing Tool for Genome-Wide Association Studies Meng Huang, Washington State University, Pullman, WA

C29: Computer Demo 4 The DOE Systems Biology Knowledgebase (KBase): Progress Toward a System for Inference and Modeling of Biological Function in Plants Priya Ranjan, University of Tennessee, Knoxville, Knoxville, TN

C30: Computer Demo 4 DNA Polymorphism Database from New-Generation Sequence Read Archive and Analytical Workflow

Takako Mochizuki1, Yasuhiro Tanizawa1, Takatomo Fujisawa1, Naruo Nikoh2, Atsushi Toyoda3, Asao Fujiyama3, Nori Kurata4, Hideki Nagasaki1, Tokurou Shimizu5, Eli Kaminuma1 and Yasukazu Nakamura1, (1)Genome Informatics Laboratory, NIG, ROIS, Shizuoka, Japan, (2)Liberal Arts, OUJ, Chiba, Japan, (3)Comparative Genomics laboratory, NIG, ROIS, Shizuoka, Japan, (4)Plant Genetics Laboratory, National Institue of Genetics, Shizuoka, Japan, (5)NARO Institute of Fruit Tree Science, Shizuoka, Japan

304 A, AshokKumar P0566, P0567 Akagi, Takashi W333, W622, W717 Alós, E. P0667 A, Malarvizhi P0954 Akama, Satoru P0803 Alphey, Luke P0433 Abasht, Behnam P0424, W652 Akashi, Kinya P0939 Alqudah, Ahmad Mohammad I. W881 Abate, Zewdie A P0637, W393 Akdemir, Deniz P1175, W802 Alquraishi, Saleh A. P0323, P0324 Abberton, Michael W175 Aken, Bronwen P1002 Altenbach, Susan B. P0186, W677 Abbo, Shahal P0611 Akhunov, Eduard P0575, P0589, P0605, Altinkut Uncuoglu, Ahu P1036 Abbott, Albert G. C13, P0888, W162, W032, W639, W879 Altmueller, Janine P0447 W326 Akhunova, Alina W032 Altpeter, Fredy P0010, P0546, P1092, Abdel-Haleem, Hussein A. P0730 Akond, Masum P0711, P0714 P1093, W084, W625, W813, W814, Abdullah, Meilina Ong W556 Akpinar, Bala Ani P0591, W879 W833 Abdul Manaf, Mohamad Arif W556 Akraiko, Tatsiana P0046 Aluome, Christelle P1015 Abebe Bekele, Wubishet P0553, W541 AL-Doss, Abdullah A. P0632 Alvarado, Gregorio P0532 Abelenda, José W736 Al-Jabri, Maja P0340 Alves, Alexandre Alonso P0007, P0008, Abernathy, Brian P0707, W866 Al-Naemi, Fatima W561 W553 Aboul-Naga, Adel M. W026 AL-Rasheid, Khaled AS. P0323, P0324 Alves, Anderson Luis P0231 Abraham, Paul E. W346 Al-Rubaye, Adnan P0422, W672 Alves, Leonardo Cardoso P0012 Abrahamsen, Mitchell S. P0423 Al-Samman, Al-Samman P0100 Alves-Ferreira, Márcio P0966 Abrams, Sam M. W828 Al-Tobasei, Rafet P0248 Alves Carvalho, Susete P1015 Abrokwah, Francis W112 Alabady, Magdy S. P0976, W303 Alwee, Sharifah Shahrul Rabiah Syed Abrouk, Michael P0195, P0589 Al Abdallat, Ayed P0100, P0621 W552, W557 Abud, Gabriel P0851 Al Abri, Mohammed A. P0328 Alzahrani, Khaloud P0412 Acevedo, Maricelis P0644 Alam, Mukhtar P0527, P0536, P0545 Amadeu, Rodrigo P0925 Acharya, Ananta W296 Alamery, Salman P0824, W604 Amaral, Elisabete W106 Acharya, Charlotte P0873, P0882, W012 Alamri, Mohammed P0615, P0627 Amarante Guimarães Pereira, Gonçalo Achayra, Ananta W078 Alarfaj, Abdullah Abdelaziz P0452 P0213, P0543, W114 Acosta, Juan J. P0979 Alaswad, Alaa P0710, P0732 Amaya, Iraida P0919, P0920 Acquadro, Alberto P1135 Alaux, Michael C17, P0654, W421, Amills, Marcel P0356, P0360, P0386, Adachi, Shunsuke P0497 W478, W504 W137, W442, W575 Adam, Emma N. P0334 Albarella, Sara W110, W111 Amin, Md. Nurul P0763 Adam, Gerhard P0130 Albert, Mark V. P0704 Amindala, BhanuPrakash P0566 Adam-Blondon, Anne-Francoise W421 Albert, Victor A. W180 Amiour, Nardjis P0535, W262 Adams, Byron P1020 Alberti, Adriana P0597, W473 Ammar, Karim P0575, W774 Adetunji, Modupeore P0394 Alberti, Giorgio P0001, W316 Amoako-Attah, Ishmael W115 Adhikari, Badri W128 Albertini, Emidio P0753, P1037 Amrine, Katherine C.H. W418 Adhikari, Sajag P0719 Albertsen, Marc C. W192 Amselem, Joelle W795 Affolter, Verena P0327 Albion, Rebecca L. P0155, P0218, Amuge, Teddy P1071 Aflitos, Saulo P0871 P1066, W347 Amundsen, Eric P0467 Agarwal, Gaurav P0206, P0208, P0211, Albrechtsen, Anders P0323, P0324 Amyot, Lisa P0772 P0778 Albright, Jessica C W350 An, Shaun W212 Agbessi, Mawussé D.T. W552 Albright, Julie D. P0329 An, Yong-Qiang (Charles) W752 Agbottah, Amy P0999 Alcalá, Leodegario Osorio P0594 An, Yong-Qiang Charles P0700, P0734 Aggrey, Samuel E. W651 Aldwinckle, Herb W178 Anai, Toyoaki P0706 Agnelli, Alberto P1037 Alexander, Lee W139 Anantharaman, Thomas P1186 Agossou Yao, D. Angelo R. P0998 Alexandrov, Nickolai W447 Andersen, Stig U. P0692, W506 Agrawal, Shiv Kumar P0763 Alfama, Françoise W421, W478 Andersen, Stig Uggerhoj P0776, P0779 Ågren, J. Arvid W894 Alfoldi, Jessica P1000, W090 Anderson, James V. P0157 Aguilar, O. Mario P0746 AlHazmi, Mohamed Ismail P0471 Anderson, Justin E. P0703, P0722, Aguilar Moron, Maria A. P0746 Ali, Jauhar W173, W777 W403, W621 Ahmad, Ali W108, W109 Ali, M Liakat P0490 Anderson, Lorinda P0849, W689 Ahmed, Ahmed H. P0323, P0324 Ali, R. Ayesha P0283 Anderson, Olin W460, W474 Ahmed, Nasar Uddin P0151 Ali, Sajid P0545 Anderson, Rayna W146 Ahn, Il-Pyung P0510 Ali, Shahin W114, W115 Andersson, Leif P0324 Ahn, Jong Hwa P0132 Alioto, Tyler P0390, P0746 Ando, Akira P0799 Ahn, Sang-Nag P0490 Aljarrah, Mazen P0600 Ando, Asako P0373 Aiba, Mina P0860 Allaby, Robin G. W241 Ando, Mei P0801 Ainouche, Malika Lily P1056, W015 Allais-Bonnet, Aurélie P0304 Ando, Tsuyu P0496 Ainsworth, Elizabeth A. P0517, P0538, Al Lawati, Ali H. P0766 Andorf, Carson M C10 P0727 Allen, George C. W267, W741 Andrade, Alan W180 Aitken, Karen S. W714 Allentoft, Morten E. W399 Andrade, Eduardo W064 Aitken, Niccy P1023 Allison, Gordon G. W076 Andrade, Larissa Mara P0180 Aitken, Sally N. W317, W573 Allwright, Mike P0001, W316 Andrade, Pablo P0549 Ajmone-Marsan, Paolo P0271 Almeida Filho, Janeo P0095, P0985 András, Farkas P0582, P0586 Ajmone Marsan, Paolo W106, W109, Alonso, Diego P. P0177, P0439 Andreassen, Rune P0237, W040 W137, W387 Alonso, Roberto W164 Andreu, Nuria P0746

305 Andrews, Warren P1186 Asp, Torben P1050, P1051, P1054, Bai, Jinhe P0215 Andy King, C P0716 W300, W427, W431, W432, W433, Bai, Yang P0895 Aning, George W770 W564 Bailey, Bryan W114, W115 Anjum, Jasia P0946 Assis, Lidianne W002 Bailey, Donovan P0043, P0764, P0775, Annicchiarico, Paolo W296 Astruc, Jean-Michel P0379 W484 Antczak, Douglas P0319, P0323, P0328, Atkins, Craig W491 Bailey, Ernest P0319, P0323, P0339 P0340 Atkinson, Jonathan P0057, W709 Bailey, Paul C. C18, W033, W183 Antelme, Sebastien W094 Atlin, Gary P0532, W852 Bailey, Rebecca W115 Anthony, Nicholas B. P0412, P0414, Atokple, Ibrahim P0784, W766, W767 Bailey-Serres, Julia W356 P0415 Atri, Chhaya W796 Baillie, Bec P0107 Anthony W Goering, Anthony W W350 Attene, Giovanna P0753 Baily, Malorie P. P0315 Antonio, Baltazar P0485 Aubert, Grégoire P1015, W210 Bain, Wendy W146 Antoniou, Eric W088 Aung, Banyar P0772 Baisakh, Niranjan P0194, W898 Antoshechkin, Igor P0454, P1020 Aury, Jean-Marc P0597, W210, W795 Bakaher, Nicolas P0870 Anuradha, G P0788, W212 Aury, Jean Marc W473 Baker, Jason P0634 Anuradha, Kotla P0566, P0567 Austin, Kathleen J. P0378, P0380 Baker, Robert P0735 Anwar, Nadia P0660, P0671, W880 Austin, Ryan P0773 Baker, Shannon P0634 Ao, Risako P0497 Auvray, Benoît W390 Balacescu, Loredana P0526 Aoki, Koh P0850, P0852 Avci, Utku W076 Balacescu, Ovidiu P0526 Aoki, Toshio W734 Avila, Felipe P0315, P0321, W269 Balasuriya, Udeni B. R. P0339 Aprea, Giuseppe W180 Avni, Raz P0572 Baldini, Riccardo M. W097 Aquino Fournier, Catharine P1167 Awad, Wahid P0630 Baldo, Angela M. P0898 Aradhya, Mallikarjuna W188, W332 Awan, Faisal Saeed P0946, P1093, Baldwin, Elizabeth A. P0215 Araneda, Cristian P0260, W045 W625 Bales, Carmille P0734 Aranzana, Maria Jose P0915 Axen, Heather J. P0113 Balkwill, Colan G. P0973 Araujo, Ana Claudia Guerra P0741, Axtell, Michael W578 Balli, Soniya P0255 P0743, W866 Aya, Koichiro P1122, P1125 Baloyi, Timmy A P0646, P0649 Aravin, Alexei P0123, W728 Aydagn, Yoseph Beyene P0532 Baltazar, Miriam D. P0509 Arbizu, Carlos P1074 Aydin, Yildiz P1036 Balteanu, Valentin Adrian P0386, W442 Archibald, Alan L. P0393, P1114, W135, AydoÄŸan, Abdulkadir W394 Balzergue, Sandrine W849 W454 Ayele, Belay T. P0227 Bamberg, John W248 Arellano, Macarena P0062 Ayling, Sarah C18, P0072, W033, W183, Ban, Jihye P0421 Arend, Daniel P1155 W313 Ban, Seung Hyun P0896 Arendonk, Johan van P0351 Ayoub, Mohammam P0670 Ban, Yusuke P0878 Ariani, Andrea P0754, W219 Ayyappan, Vasudevan P0024, P0759 Banan, Darshi P0518, P0569 Arick II, Mark P0343 Azevedo, Gabriel C. W002 Band, Mark P0031, P0046 Arick II, Mark A. P0462, P0465 Azevedo, Vasco P0459 Bandeira, Nuno F. W678 Arighi, Cecilia P0429 Azevedo Peixoto, Leonardo de P0085 Bandelj, Dunja P0104, P0885 Ariizumi, Tohru P0850 Azhaguvel, Perumal P1048 Bandillo, Nonoy P0708 Arkin, Adam P1138 Aziz, Irum P0619 Banerjee, Anjan K W718 Armstead, Ian W430 Azuma, Akifumi P0878 Banik, Mitali P1039, W291 Armstrong, Susan P0795 Babar, Md A. P0523 Banks, Jo Ann P1082 Arnal, Nadege P0070 Babiker, Ebrahiem P0645, W538 Banks, Travis P0890, P0913, W328 Arnold, Carolyn P0333 Babu, Raman W768 Bannasch, Danika P0327, W270 Arnold, Jennifer P. P0465 Bachem, Christian W736 Bansal, Urmil P0639, P0641, P0642 Aroian, Raffi V. P0454 Bacher, Blaire W556 Banziger, Marianne P0532 Arraes, Fabricio B.M. P0725 Bachlava, Eleni P0950 Bao, Hua W828 Arribat, Sandrine W849 Bachleda, Nicole W776 Bao, Lisui P0240 Artico, Sinara P0966 Bachtrog, Doris W657 Bapst, Beat P0281 Artlip, Timothy P0875, W592 Bacic, Antony P1184 Bar, Einat W227 Arumuganathan, Kathiravetpilla P0440 Backlund, Jan Erik W503, W761 Bar-Joseph, Ziv W358 Arundale, Rebecca P0009 Baden, Russell W845 Bar-Yaakov, Irit P0901 Arús, Pere P0915 Bader, Rechian W581 Barabaschi, Delfina P0587 Arya, Anoop P0350 Badgett, Marty Ray P0068 Barad, Omer P0572, W184, W227 Asamizu, Erika P1121 Bae, Sangsu P0092 Barak, Simon P0855 Asano, Satomi P1125 Baenziger, P. Stephen P0603, P0605 Barak, Vered P0636 Ashby, Meredith P1183 Baer, Sara G P1030, W639 Barakat, Abdelali P0834 Ashman, Tia-Lynn W711 Baes, Christine F. P0281 Barakat, Mohamed N. P0627, P0632 Ashraf, Bilal H. P1054, W427, W433 Bagnaresi, Paolo P0587 Barash, Yoseph W793 Ashrafi, Hamid P0097, P0956 Bagnato, Alessandro P0285, P0287, Barba, Paola P0873, P0882, W012, Ashwell, Chris P0394, P0400, P0401, P0288 W419 P0426, W028 Bagyalakshmi, K. W815 Barbazuk, Brad P0979 Ashwell, Chris M. P0121 Bahariah, B P0005 Barbe, Valerie P0597, W473, W795 Bai, Guihua P0110, P0625, P0634 Barbieri, Johanna P0304

306 Barbotte, Laetitia P0377 Beaver, James P0752, W169, W221 Bertelsen, Mads Frost P0323 Barcaccia, Gianni W193 Beavis, William D. P0961 Bertioli, David P0741, P0743, W866 Bardak, Adem P0957 Becerra Lopez-Lavalle, L. Bertioli, Soraya W866 Bardet, Sébastien P1162 Becker, Annette P0141, P0797, W616 Bertolini, Francesca P0344, W823 Barendse, William W155 Bed'hom, Bertrand P0392, P0423 Bertorelle, Giorgio P0753 Bariana, Harbans P0639, P0641 Bedada, Zewdu Edea P0295, P0316 Bertrand, Laurie P0597 Barker, Brittany W255 Bednarczyk, Marek P0428 Bett, Kirstin P0763, W209, W408, W872, Barker, Michael S. P1086 Bedre, Renesh P0194, W898 W873 Barkley, Noelle A. P0784, W392 Beebe, Stephen E. P0752, W221 Beuchle, Danielle P0183 Barnes, Ian W234 Beecher, Brian S. P0186, W677 Beulé, Thierry W552 Barnes, Steve W586, W809 Beeson, Samantha K. P0335 Bevan, Michael W030 Barrell, Daniel P1002 Beier, Sebastian W889 Bextine, Blake W064, W065 Barrero, Jose W681 Beilstein, Mark A W486 Beydon, Genséric P0070 Barrios-Perez, Ilse P0538 Beissinger, Tim W388 Bhak, Jong P0274, W397 Barron, Lorna W013 Beissinger, Timothy P0529, P0531 Bhakta, Mehul P0752, W221 Barros, Beatriz W002 Bektas, Yasemin P0140 Bhandawat, Abhishek P1053 Barry, Cornelius S. P0867 Belamkar, Vikas P0690, W223 Bharti, Arvind K. P0767 Barry, Kerrie W. P0003, P0570, W567, Belasque Jr., José P0931 Bhattacharya, V. Gautam P0690, W223 W713, W780, W784 Belcher, Araby P0664 Bhattacharyya, Madan K. P0810, W605 Bart, Rebecca P0093 Bellaloui, Nacer P0711 Bhattarai, Kishor K. P0770 Barth, Susanne W357, W434 Bellanger, Laurence W180 Bhavani, Sridhar P0647, P0677 Bartha, Denes W634 Bellec, Arnaud P0070, P0074, P0584, Bhering, Leonardo Lopes P0085 Bartholomé, Jérôme P0990, P0992, W473 Bhide, Amey S. P0797 W305 Bellizzi, Maria W606 Bhide, Ketaki P0024, P0759, P1073 Bartley, Laura P0504, W078 Bello, Nora P0134, P1030, W639 Bhowmik, Pankaj P0581 Bartoš, Jan P0195, P0590, P0658 Bellone, Rebecca P0341 Biagetti, Eleonora P0753 Bartoszewski, Grzegorz W545 Bellott, Daniel Winston P0322 Bianco, Erica W156 Baruca Arbeiter, Alenka P0104 Bellucci, Elisa P0753 Biasioli, Franco P0903, W329 Baruch, Kobi P0572 Belser, Caroline P0597, W473 Bickhart, Derek P0273, P0277, W107, Bass, Hank W741 Beltran, Sergi Beltran P0360, W442 W141, W144, W147, W155, W440 Bassi, Daniele P0916, W326 Beltran G, Maria F P0062 Bicknell, Ross P0972 Bassil, Nahla P0906, P0907, P0923, Belyaeva, Irina W876 Bidwell, Christopher A. W138 W335 Belzile, François P0698 Biemond, Christiaan P1189 Bastiaansen, John P0351 Benatti, Thiago P0550, W812 Bilgi, Bahay G. P1066, W347 Bastianel, Marinês P0929, W161 Benavente, Elena W097 Billiard, Sylvain P0796 Bastianelli, Giacomo P0088 Benazzo, Andrea P0753 Billis, Konstantinos P1002 Bastow, Ruth W395 Benchimol-Reis, Luciana Lasry P0758 Billon, Yvon P0168, P0361, P0363 Basu-Roy, Sayantani P0849, W689 Bendahmane, Abdelhafid W406 Bilski, Piotr P0148 Bates, Ronald O. W831 Bendixen, Christian P0285 Bindschedler, Laurence W607 Bateson, Maria P0340 Beneventi, Magda A. P0725 Binns, M.M. P0336 Batley, Jacqueline P0469, P0590, Benevenuto, Juliana P0466 Binns, Matthew M. P0335 P0782, P0824, W014, W254, W471, Benidt, Sam P0522 Birchler, James A. P0525, W580, W585 W604, W796 Bennett, Malcolm J. P0057, W709 Bird, Nicholas P0602, W465 Batra, Sajeev P1124, P1126 Bennetzen, Jeffrey L. P0576, W426, Birkett, Clay C09, P0653, P0656, W501, Battenfield, Sarah D. P0599 W460, W746 W537 Battey, James P0870 Benning, Christoph W083 Birnbaum, Kenneth D W759 Batushansky, Albert P0855, W340 Benucci, Gian Maria Niccolò P1037 Bisaga, Maciej W540 Batzel, Peter W525 Berardini, Tanya Z. P1130, W056 Bishop, Stephen C. P0293 Bauck, Stewart P0266 Berge, Natalie F. P0169 Bissuel, Christine W265 Bauduin, Matthew P0623 Berger, Dave K P0544, P1045 Biswas, Sudip P0508 Baum, Amy S. P0981, W263 Berger, Jens D. W394 Bitocchi, Elena P0753 Baum, David A. P0983 Berges, Helene P0070, P0074, P0584, Bitragunta, Deepak P0697, P0737 Baumgard, Lance H. P0348, W025 P0591, P0663, P0796, P0950, W210, Bixley, Matthew J. W390 Baumgartner, Kendra W418 W473, W795, W882 Bjorkquist, Angelica W028 Baumgartner, Wes P0167 Bergonzi, Sara W736 Blackburn, Harvey P0169, P0279, W142, Baute, Gregory J. P0950 Berkman, Paul J. W714 W143 Baxter, Ivan P0518, P0569, W746 Berlin, Konstantin W089 Blackman, Benjamin K. P0949, P1034 Bayer, Philipp Emanuel P0816, P0824, Bernard, Jean-Marc P1162 Blackmon, William J. P0690, W223 W018, W604 Bernardo, Rex P0530, W747 Blahut, Johnathon Roger P1018 Beale, Holly C. P0391 Bernes, Irene P0458 Blake, Tom P0672 Beattie, Craig W. P0170 Berny, Jorge C. P0754 Blanchard, Steven W538 Beattie, Gwyn A. W284 Berri, Mustapha P0363 Blanco, Antonio P0575, P0578, P0585, Beaubian, Karen P0665 Berrigan, Rebecca W503, W761 P0587 Beaulieu, Jean W319 Berry, Simon P0602, W465 Blanco-Ulate, Barbara W418

307 Blanco Pastor, Jose Luis P1032 Botvinnik, Olga B. C25, P1149 Bristow, Jim W780 Blaustein, Leon P0447 Bouchet, Anne-Sophie W265 Brito, Michael dos Santos P0180 Blavet, Nicolas P0086 Bouchet, Sophie P0554, P0563 Britt, Anne B. W740 Blechl, Ann W603 Bouffier, Laurent P0990, P0992 Britto, Dahyana S. W116 Blechl, Ann E. P0186, W677 Boughman, Jenny W798 Britton, Monica T. W332 Blenda, Anna C13, P0888 Boukar, Ousmane P0784, W766, W767 Brkljacic, Jelena P0793 Block, Hushton P0165 Bourne, Philip G001 Broad Genomics Platform W090 Blott, S. P0336 Bousquet, Jean W319 Broccanello, Chiara W804 Blott, Sarah P0335 Boutte, Julien P1056, W015 Brock, Marcus T. W103 Bluhm, Burt H. P0456 Bouvet, Jean-Marc W554 Brodsky, Jae P1165 Blumwald, Eduardo W566, W769 Bovet, Lucien P0870 Broggini, Giovanni AL P1104 Bluyssen, Hans P0428 Bovina, Riccardo P0657, W508, W705 Brohammer, Alex W184 BM, Khadi P0954 Bovine Respiratory Disease Consortium Brooks, Samantha A. P0328, P0329, Bo, Kailiang P0932 W140 P0331, P0338, P0340 Boase, Murray P0972 Bovo, Samuele P0344, W823 Brooks, Siraprapa P0889 Boava, Leonardo P. P0929, W161 Bowers, John E. P0950 Brouwer, Cory W538 Boddicker, Rebecca L. W025 Bowman, Brett P1183 Brouwer, Paul P1084 Bodénès, Catherine W795 Bowman, Brian Carter P0608 Brown, C. Titus W653, W786 Bodin, Loys W151 Bowman, Megan J P1168, W184 Brown, Dale P0310 Bodunrin, Abiodun W228 Boxall, Suzanna P1069 Brown, Judith K W113 Boerjan, Wout P1042, W293 Boykin, Deborah P0193 Brown, Patrick J. P0018, P0517, P0538, Boerma, Roger P0730, W776 Boyko, Adam R. W131, W132 P0561 Boerwinkle, Eric W139, W453, W861 Boyle, Kerry P0635 Brown, Ryan W538 Bogdanove, Adam W607 Boyles, Richard P0552 Brown, Susan P0134, W067, W639 Bogden, Robert P0030 Braasch, Ingo W525 Brown-Guedira, Gina P0672 Bogeat-Triboulot, Marie-Béatrice W308 Bradbury, Peter P0528, P1193 Brozynska, Marta P0486 Bohn, Martin P0477 Bradeen, James M. P0891 Bruce, Heather L. P0165 Boichard, Didier A. P0272, P0304 Braden, Laura M. W438 Bruce, Myron P0189, W352 Boitard, Simon P0270, P1192 Bradish, Christine P0923 Brueggeman, Robert S. P0474, P0650, Bok, Jin Woo W350 Bradley, Daniel G. W235, W456 P0675, P0679, P0680, P0978 Bolek, Yuksel P0957 Brady, Siobhan W356 Bruggmann, Remy P0526 Bolger, Marie W060 Braeutigam, Andrea P0179 Brum, Itaraju P0550 Bolger, Marie E P1134 Braithwaite, Evan W539 Brumbley, Stevens M P0037 Bolin, Jay F. P1078 Brannick, Erin P0424, W652 Brummer, E. Charles P0767, W078, Boller, Beat W300 Braques, Régis P0304 W296 Bolser, Dan P1119 Brashier, Michael P0343 Brummer, Joe E. P0026, W563 Bomba, Lorenzo W109 Brasileiro, Ana C. M. P0136, P0741, Brunel, Dominique P1015 Bombardier, Lauren P0849, W689 P0743 Brunner, Susanne P0648 Bombarely, Aureliano P0129, P1083 Braun, Bremen M C10 Bruno, Laura C. P0027 Bond, Jude W135 Braun, David M. P0556, W079 Brunt, Andrew Van W556 Bonetta, Dario P0773 Braun, Hans-Joachim W774 Brusslan, Judy A. P0838, W261 Bonham-Smith, Peta P0143 Brauning, Rudiger W020, W146, W451, Brutnell, Thomas P. P0058, P0570, Bonierbale, Merideth P0846 W459 P1016, W344 Bonman, J. Michael P0644, W538 Bräutigam, Andrea P1084, P1085 Bryant, Doug P0923 Bonnett, David W774 Bravo, Juliana Pereira P0808, P0996 Bryant, Johnny P1030 Bono, Hidemasa C12 Bravo, Soraya P0062 Bryant, Stephanie A P0122 Booker, Helen P1039, P1043, W291, Bredeson, Jessen V. W121 Bryant, Stephanie A. W743 W294 Breen, James M. P0233, P0475, P0877, Buchanan, Fiona C P0300, P0305 Boote, Kenneth P0752, W221 W041 Buchanan, Justin W. P0297 Borchel, Andreas P0234 Breen, Patrick P0976, W303 Buck, James P0730 Borevitz, Justin O. P0023, P1023 Brenchley, Rachel P0433, P1069 Buckler, Edward S. P0513, P0528, Borg, Solange P1182 Brendel, Oliver W305, W308 P0873, P1158, P1193, W123, W567 Borodovsky, Mark W091, W203 Brennan, C. W463 Buckles, Elizabeth P0340 Boroughs, Ben P0682, W536 Brenton, Zach P0552 Buckner, Brent W695 Borovsky, Dov P0434 Bressiani, José Antonio P0543 Budak, Hikmet P0591, P0633, W879 Borrell, Andrew K. W682 Breton, Fréderic W557 Budar, Françoise P0663, W882 Bosch, Maurice W076 Brick, Leslie A. P0755 Budiman, Muhammad Arief W556 Boshier, David W313 Brick, Mark A. P0755 Buell, C. Robin P0842, P0843, W184, Bossolini, Eligio P0637, W393, W797 Briggs, Robert E. P0119 W248, W567 Bosze, Zsuzsanna P0443 Briggs, Steven W850 Buffalo, Vince W183 Botanga, Christopher P0613 Bright, Lauren Ashley P0343 Buggs, Richard P1185, W313 Botella, Miguel A. P0919 Brilhante, Osmundo P0966 Bukhman, Yury V. P0027 Botha, Frederik C W816 Brill, Eva P0431 Bukowski, Robert P0513 Bottje, Walter P0173, W671 Brinas, Laura P0597 Bukun, Bekir W394

308 Bulli, Peter P0637, W393 Cai, Zhe W703 Carling, Jason P0052 Buluç, Aydın W713 Caicedo, Ana W097 Carlini-Garcia, Luciana P0547 Bundy, Joseph P0886 Caig, Vanessa P0052 Carlsen, Steven A. P0474, P0650 Bundzinsk, Ilara G. P0112, W837 Cain, Scott W367, W407 Carlson, Craig H. P0003, W315, W720 Bunn, David A. W770 Calderón, M.C. P0667 Carlson, John E. P0969, W304, W312, Buonaccorsi, Vincent P0236, P0257, Calla, Bernarda P0431 W878 W697 Calò, Daniela Giovanna P0344, P0355, Carlson, Joseph W. P1124, P1126, Burdiak, Pawel P1133 W823 W409 Buré, Cyril W308 Calus, Mario P.L. P1172 Carman, John G. W190 Burešová, Veronika P0582, P0586 Câmara Ferreira, Francisco P0746, Carmo, Valdevino W116 Burge, Dylan P1086 W201 Carneiro, Monalisa S. P0011 Burger, Joseph W227 Camargo, Eduardo L. O. P0543 Carocha, Victor P0974 Burgess, Brandon P0968 Cameron, Connor T. P0170, P0767 Carollo Blake, Victoria C09, P0653, Burgess, Diane W632 Cammack, Kristi M. P0378, P0380 P0656, W501, W537 Burgess, Shane W646 Campbell, Benjamin W. P0717 Carpentier, Sebastien C W070, W679 Burgess, Shane C P0343 Campbell, Darwin C10 Carrasco, Basilio P0912, W330 Burgos-Paz, William W156 Campbell, Nathan P0081 Carrington, James W732 Burgueño, Juan P0594, P0596 Campo Sánchez, Sonia W732 Carson, James P1113 Burke, John P0555, P0561, W750 Campoy Corbalán, José A. W334 Carstens, Maryke P0544 Burke, John M. P0950, P0952 Campuzano, Gaspar Estrada P0594 Carter, Patrick A. P0894 Burke, Molly K. W637 Camus-Kulandaivelu, Létizia W557 Carty, Helen P0385 Burkholz, Alexandra W809 Canario, Laurianne P0168 Carvalho, Ana P0974 Burnette, James P1143, W259, W696 Candreva, Jason P0546, W814, W833 Carvalho, Giselle de P0466 Burow, Gloria P0555, P0561, P0738, Canela, Oriol P0356 Carvalho, Igor Bacon P0741 W750 Canesin, Lucas Eduardo Costa W821 Carvalho, Paula V. P0136 Burow, Mark D. P0738 Cannarozzi, Gina P1057 Carvalho Andrade, Marcela P0851 Burrell, Millie W640 Cannon, Ethalinda C10, C11, P0697, Carver, Brett F. P0624 Burrill, John P1165 P0735, P0737, P1123, W487, W611, Carver, Jeremy W678 Burris, Jason N. P0021, P0199 W613, W877 Carville, Jackie P0263 Burris, Kellie P. P1097 Cannon, Steven P0699 Casadio, Rita P0344, P0575, W823 Burstin, Judith P1015, W210 Cannon, Steven B. C11, P0690, P0693, Casas, Eduardo P0119 Bürstmayr, Hermann P0130 P0695, P0697, P0735, P0737, P1123, Case, Austin J. P0677 Burt, David P1114 W223, W403, W487, W613, W866 Caserta, Raquel P1103 Burt, David W. P0393, P0396, P0398 Cánovas, Angela P0310, P0356, P0360, Caseys, Celine W797 Burton, James W109 W442 Casler, Michael P0023, W429, W567 Burton, Joshua N. P0044, W144, W200, Cantao, Mauricio P0418 Caspi, Ron P0129 W440 Cantao, Mauricio Egidio P0176, P0358 Cass, Cynthia L. P0027, W083, W094 Bury, Paul P0663, W882 Cantrell, Bonnie P0296 Cassin, Andrew M. P1184 Busanello, Carlos P0657, W508, W705 Cantu, Dario P0637, W393, W418, Castañeda, Nadia Vieira P0489 Busatto, Nicola P0892, P0893, P0902, W603, W804 Castell-Miller, Claudia W099 P0903, W329 Cao, Han P0042, P0077, P0319, P1186 Castelló, Anna W824 Busch, Anke W791 Cao, Heping P0004 Castiglione, Stefano W634 Bushakra, Jill M. P0923 Cao, Zhe P1058, W550 Castric, Vincent P0796 Busov, Victor W594 Cápal, Petr P0086, P0582, P0586 Castro, Ariel P1174 Buttazzoni, Luca P0355 Capella Gutierrez, Salvador J. P0746, Castro, Daniel Bedo Assumpção P0929, Butterfield, Tim W332 P0750 W161 Buxton, Simon P1145, P1171 Capettini, Flavio P0600 Catalan, Pilar P1023 Buyyarapu, Ramesh P0965 Capitan, Aurélien P0304 Cattivelli, Luigi P0587, W888 Byrne, Stephen P1050, P1051, P1054, Capmbell, Darwin P0516 Cattonaro, Federica P0587, P0591, W300, W427, W431, W432, W433, Capote, Juan W442 W179, W308 W564 Cappellin, Luca P0903 Cauet, Stephane P0070 Cabral, Adrian P0618 Caputo, P. P0335, P0336 Cavagnaro, Pablo P1077 Cabuk Sahin, Ezgi P1036 Caramante, Martina P0853 Cavallini, Juliana da Silva P0931 Caccamo, Mario P0602, P1114, W313, Carareto, Claudia P0948, W182 Cavanagh, Colin W681 W465 Carasco-Lacombe, Cathy W557 Cave, Vanessa W020 Cadle-Davidson, Lance P0873, P0876, Carazzolle, Marcelo Falsarella P0213, Ceccarelli, Salvatore P0621, W177 P0882, P0887, P0889, W012, W419 P0543 Cellon, Catherine P0925 Caetano, Alexandre R. P0231, P0289, Carbonel, Sérgio Augusto Morais P0758 Cenci, Alberto W070 P1170, W038 Carbonell, Jose W164 Centritto, Mauro W308 Caffall, Kerry P1093, W625 Cardeno, Charis W332, W568 Cepela, Jason P0843 Cahoon, Ed W623 Cardoso, Marisa P0358 Cericola, Fabio P0659, P1050, P1054, Cai, Guohong P0119 Cardoso, Taina P0356 P1135, W427, W433 Cai, Qing P0098 Cariaga, Kathleen A. W119 Cerutti, Mario W179 Cai, Xiwen P0607, W365 Carillier, Céline P0383, W444 Cervantes-Pérez, Sergio Alan P0216

309 Cervera, Maria Teresa P0982 Chen, Jiafa P0514 Choe, Junkyoung P0164 Cha, Seong W W206 Chen, Jianli P0634 Choi, Beom-Soon P1081 Chabbert, Brigitte P1042, W293 Chen, Jianqing P0911 Choi, Bu-Woong P0484 Chadha-Mohanty, Prabhjit P0505 Chen, Jinbo P1155 Choi, Cheol P0896 Chae, Won Byoung P0826 Chen, Jinfeng P0936 Choi, Doil P0132, P0863, P0865, P0866 Chaffin, Shawn W538 Chen, Junfeng P0308 Choi, Dong-Woog P0220, P1087 Chagne, David P0972 Chen, Kaiyi P0862 Choi, Hong-Il P1081 Chaidir, Nadia I. P0950 Chen, Lei P0135, P0172 Choi, Igseo P0225, P0372, W828 Chakrabarti, Manohar P0197 Chen, Min W845 Choi, Kimyung P0353 Chalhoub, Boulos P0818, W104, W280, Chen, Ning W796 Choi, Nu Ri P0353 W604 Chen, Pinghua P0098 Choi, San P0220 Chaluvadi, Srini W746 Chen, Qijiao P1027 Choi, Sang-Ho P0450 Chamberlin, Mark A. W192 Chen, Riyan P1023 Choi, So-Young P0403 Chambers, Alan P0214, W323, W359 Chen, Ru-Kai P0098 Choi, Sun Hee P0496 Chamrad, Ivo P0191 Chen, Shiyuan P0694, P0696 Choi, SuRyun W102 Chan, Agnes P W315 Chen, Songbiao W606 Choi, Woo Lee P0196 Chan, Agnes P. P0003 Chen, Sumei W548 Choi, Yang Do P0153, P0812 Chan, Crystal W209 Chen, Weidong P0457, W207 Choisne, Nathalie W421 Chan, Patricia P. P0391 Chen, Wenbo P0440 Chopra, Ratan P0738 Chan, Saki P0042, P0319 Chen, Xianming P0637, W393 Choudhary, Bibha P1046, P1047, P1072, Chandra, Ambika W299 Chen, Xinlu P1009 W806 Chandra, Aneal P1129 Chen, Xiuhua P0010, W814 Chougule, Kapeel W483 Chang, Chia-Hui P0862 Chen, Xuemei G004 Choulet, Frederic C17, P0597, P0654, Chang, Dan P0324 Chen, Zhiliang W635 W031, W473, W478, W691 Chang, Peter W209, W394 Chen, Zhongxu P0228 Chowdhary, Bhanu P P0322, P0333 Chang, Peter L P0780 Cheng, Chia-Yi C23, P0790, P0792, Christe, Camille W320 Chang, Shuang W643 W059, W410, W876 Christian, Ryan W. P0899 Chang, Wei W871 Cheng, Chun-Huai C03, C13, C14, Christin, P. a. P0179, W426 Chantreau, Maxime P1042, W293 P0888, P0953, P1153, W162, W571, Christopoulou, Marilena P1011, W196, Chao, Shiaoman P0589, P0607, P0629, W872, W874 W380 P0634, P0637, P0644, P0651, P0665, Cheng, Chunyan P0936 Chuah, Aaron P1023 W032, W365, W393, W538, W879 Cheng, Feng P0814 Chugh, Vishal P0622 Chapinal, Núria P0298 Cheng, Hans P0417, W534, W644, Chung, Sung Jin P0092, P0219 Chapman, Antony V. E. P0192, W607 W669 Ciacciulli, Angelo P0916 Chapman, Jarrod W029, W713 Cheng, Jianlin W128 Cianzio, Silvia P0731 Chapman, Kent W086 Cheng, Lailiang P0895 Cicak, Toby P1096 Chapman, Mark A. W308 Cheng, Peng P0744, W208 Cintra, Leandro C. P0231, P0289 Chapple, Richard W147 Cheng, Shifeng P1085 Ciobanu, Daniel W829 Charron, Carine W714 Cheng, Zhihao W587, W688 Ciobanu, Daniel C. P0367, P0374 Chaturvedi, Samridhi P0441 Cherney, Jerome W567 Ciotola, Francesca W110 Chaturvedi, Sushil P0783, W009 Cherng, Shin-jiun P0941 Cirera, Susanna W824 Chaudhary, Manil P1129 Cheung, Matthew P1145, P1171 Cisse, Ndiaga P0784, W766, W767 Chaudhuri, Arkaprava W796 Chevre, Anne-Marie W796 Claessens, Annie W296 Chauhan, Raj D. P0093 Chhalliyil, Pradheep P0045, P0061 Clark, Dale P0613 Chaves, Amalia S. P0290 Chhatre, Vikram W257 Clark, Dominic W376 Chekhovskiy, Konstantin P1048 Chhetri, Mumta P0639 Clark, Jo W313 Chellapilla, Bharadwaj W778 Chibanguza, Kundai P0886 Clark, Lindsay V. P0026, W563 Chemayek, Bosco P0639 Childers, Christopher P1118, W875 Clark, Matt P0144, P1114 Chen, Ai-Lin P0862 Childs, Kevin L. P1168, W184 Clark, Matthew D. P0887 Chen, Ailu P0240, W039 Chilvers, Martin W286 Clark, Randy W002 Chen, Changbin P0533, P0534 Chin, Jason P0097, W089, W180 Clark, Richard M. P0145 Chen, Charles P0782 Chin, Joong Hyoun P0489 Clark, Tyson A. P0049, P0073, W360 Chen, Charles Y. P0098 Chinnaraja, C. W815 Clarke, Carling P0580 Chen, Chengxuan P0702 Chino, Fumika P1063 Clarke, Fran R. P0588, P0593, P0617, Chen, Chien-Hua P0862 Chiorato, Alisson Fernando P0758 P0620 Chen, Chuanchuan P0221 Chitikineni, Annapurna P0781, P0788, Clarke, John M. P0593, P0617 Chen, Chunxian P0099, W162 P0789 Clarke, Kasia P0652 Chen, Cynthia P0069 Chitikineni, Anu P0206, P0783, W009 Clarke, Laura P1114 Chen, Dongqin W700 Chitnis, Parag W153 Clarke, Shannon W020, W146, W390, Chen, Fadi W548 Chitnis, Vijaya R. P0227 W458 Chen, Feng P1009 Chiulele, Rogerio W766 Clarkson, Cara P0378 Chen, Guoxiong P0671, W880 Cho, Seoae P0325, P0357, P0365 Clasen, Benjamin W600 Chen, Hua P0601 Cho, Yoo-Hyun P0484 Claude, Andrew P0343 Chen, Jay P0217 Cho, Young B. P0715 Clavijo, Bernardo P0072, W313

310 Clavijo, Jose Alejandro P0752, W221 Cook, Devin P0173 Cregan, Perry P0101, P0699, P0708, Cleary, Alan C11, P0693, P0697 Cook, Douglas R P0780, W209 P0730 Clegg, Michael T. P0669 Cook, Douglas R. W394 Crepeau, Marc P0988, W332, W568, Clement, Didier P0997, W120 Cook, Frank P0339 W569 Clément, Gilles P0535, W262 Cook, Mark W304, W878 Crisovan, Emily P0842, W567 Clemente, Thomas E P0705, W084, Cook, Meridith P0082 Crist, Debbie P0793 W755 Cooksey, Amanda M. W646 Cristancho, Marco A. W178 Clemente, Tom W623 Coombs, Joseph P0842 Cristofani-Yaly, Mariangela P0929, W161 Clements, Dave W354 Cooper, Alan P0475 Cronk, Quentin C. B. W320 Clemons, Kimberly P0956 Cooper, Elizabeth A. P0552 Cronn, Richard P0065, P0764, P0968 Cleveland, Beth P0250 Cooper, Laurel P1123, W487, W612, Crooijmans, Richard W535 Cleveland, Matthew W533 W613, W842 Crooijmans, Richard P.M.A. P0350 Clifton, Kari P0113 Cooperstone, Jessica P0851, P0857 Crooker, Brian A. W150 Clifton-Brown, John C. P0028 Copetti, Dario W860 Cros, David W554 Cline, Hollis P0448 Coram, Tristan W624 Crosby, Robert W264 Clop, Alex P0376, W824 Coriton, Olivier W796 Crossa, José P0532, W389, W774 Close, Timothy J. P0204, P0658, P0784, Cormican, Paul W434 Crouzillat, Dominique W180, W181 P0785, P0786, W489, W766, W767 Cormier, Fabien W684 Crowhurst, Ross N P0972, W331 Clouse, Jared P1044 Cornelius, John A. P0448 Crozier, Jane W114 Cloutier, Sylvie P0160, P1039, P1043, Corol, Delia W808 Cruickshank, Jenifer P0314 W291, W294 Corrado, Giandomenico P0853 Cruz, Cosme Damião P0085 Clowers, Katie J P1035 Correa Molinari, Hugo B. P0203 Cruz, Daniel F. C24 Coble, Derrick J. W028 Corredig, Milena P0283 Cruz, Fernando P0390 Cockett, Noelle P0382, W139, W453 Correll, Melanie P0752, W221 Cruz, Libertado W109 Cockrum, Rebecca P0169, P0310 Coruzzi, Gloria W058 Cruz-Hernandez, Pedro P0259 Cockrum, Rebecca R. P0380 Corvelo, André P0390, P0746 Cseh, András P0586 Coe, Michael W335 Cosenza, Gianfranco W108, W109 Cseke, Leland J. W176 Coelho, Susana M W716 Costa, Estela A. W821 Cuacos, Maria P0795 Cofre, Teresa D C G P0931 Costa, Fabrizio P0892, P0893, P0902, Cuesta-Marcos, Alfonso P0664, P0673 Cogan, Noel O. I. P0107, W297 P0903, W329 Cuevas, Jaime W389 Coggeshall, Mark P0969, W304, W312, Costa, Guglielmo P0892, P0893, P0902, Cui, Yuehua P0842 W878 P0903, W329 Cullis, Christopher P1038, W292 Cohen, David W308 Costa, Juliana M. P0177 Cumbie, William Patrick P0986 Cohn, Marc A. P0488 Costa, Katrina W375 Cunnick, Joan W832 Colasuonno, Pasqualina P0578 Costich, Denise W567 Cunningham, Hannah C. P0378 Colazo, Marcos G. P0165 Costin, Alexandra Silvia P0386 Cunningham, Michael P0986 Colbert, Raphael P0752, W221 Cote, Linda P0873 Curiel, Luis W474 Cole, John B. P0273, P0277, W141, Cottingham, Robert W. P1138 Curik, Ino P0443 W150, W155 Cottman, MariEllen P1165 Curry, Caitlin J. P1022 Coleman, Craig E. P0455 Cotucheau, Julien P0869 Curry, J D P0385 Coleman, Stephen P0334 Couderc, Loic C17, P0654, W478 Curtolo, Maiara P0929, W161 Coletta, Angelo W110 Couger, M. Brian W672 Curuk, Pembe P1031 Colgan, Don J. W635 Couldrey, Christine W020 Cushman, John C. P0150, P0155, Collard, Bertrand P0489 Couloux, Arnaud P0597, W473 P0218, P1066, W347 Colle, Marivi P0937 Courtial, Audrey P0070 Cuthbert, Richard D. P0588, P0620 Colli, Licia W109 Courtright, Amanda P0448 Cwiek, Hanna W504 Collier, Chad P0059, P0107 Cousins, Peter P0873 Czaban, Adrian P1050, P1054, W427, Collier, Ray P0025, W566 Coutinho, Luiz Lehmann P0290, P0418 W432, W433 Collin, Myriam W552 Couturon, Emmanuel W180, W181 Czarnecki, Olaf P0217 Collins, A. Grace P0020 Coville, Jean Luc P0392 Czypionka, Till P0447 Collins, Cassandra P0877 Covington, Michael P0817 D'Hont, Angélique W714 Colmsee, Christian P1155 Covington, Michael F. W103 D'hont, Angélique W074 Colombi, Cinzia P0916 Cowling, Wallace A. W796 Da, Yang P0273, P1176, W150 Comai, Luca W588, W622, W717, W742 Cox, Timothy P0385 da Costa, Ricardo W076 Comstock, Jack P0009, W811 Coyne, Clare P0763, W208 Dacosta-Calheiros, Emmanuel W394 Conant, Gavin P0378, P0380, W632 Coyne, Clarice J. P0744, W209, W210 Daetwyler, Hans D. P0639, W297 Conesa, Ana C26, W092, W794 Cozzi, Maria C. P0287, P0288 Dai, Lu P0702 Conev, Rumen P0890 Cozzuto, Luca P0746, P0750 Dai, Xinbin C16, C20, P0688, P0794 Conklin, Phillip Adam W740 Crabb, James L. P0858 Dai, Xiongtao W460 Conner, Anthony J P0776 Cram, Dustin J P0626 Dalen, Love W238 Consuegra, Sofia P0233, W041 Cramer, Grant R. W675 Daley, Maureen W566 Contreras- Castillo, Carmen J. P0301 Crampton, Mollee C P0756 Dall'Olio, Stefania P0344, W823 Contrino, Sergio C23, P0790, P0792, Craven, Maryke P0541 Dalloul, Rami A. P0405 W059

311 Dalrymple, Brian P0381, W135, W139, DeClerck, Genevieve P0490 Deshmukh, Rupesh W706 W453 Decorps, Christophe P0869 Deshpande, Panchajanya W088 Dalsing, Brad P0538 Dedemo, Gisele Cristina P0184 Deshpande, Santosh P0557, P0558, Dalton-Morgan, Jessica W796 Defilippi, Bruno P0874 P0562, P0566, P0567 Damodaran, Suresh P0718, P0719, De Gernier, Hugues W266 Deshpande, Shweta W567 W626 DeGironimo, Lisa P1086 Desiderio, Francesca P0575, P0587 Danchin, Coralie P0304 De Guzman, Christian P0506 De Silva, Nihal W013 Dandekar, Abhaya W188, W332 Dehesh, Katayoon W085 Desmae, Haile P0208 Danowitz, Ann W860 Dehgani, Hamid P0502 Dessie, Tadelle P0295 Dantas, Simone P1019 DeIulio, Gregory A. W097 De Storme, Nico P0090, W191 Dapprich, Johannes P0733 De Jesus, Susana P0857 Detering, Frank P1129 Darby, Alistair C. P0433, P1069 de Jesus Santos, Marcelo W116, W118 Dettori, Maria Teresa W326 Dardick, Christopher W326 De Jong, Darlene M. P0859 Devani, Ravi S. W718 Darracq, Aude W809 De Jong, Gerben P0286 Dever, Louise P1069 Darre, Thibaud W181 de Jong, Hans P0827, P0871 DeVetter, Lisa C13, P0888 Darrier, Benoît W691 deJong, Pieter J. P0988, W568, W569 Devisetty, Upendra Kumar P0817, W103, Das, Pranab J P0322, P0333 Dekkers, Jack C.M. P0225, W770, W482 Das, Roma R. P0742, W763, W778 W828, W832 De Vita, Pasquale P0585 Dash, Sudhansu C11, P0695, P0697, de Kochko, Alexandre P0948, W180, Devitt, Nicolas P0767 P0699, P0735, P0737 W181, W182 Devkota, Ravindra P0625, P0634 Da Silva, Jorge A. P0550, W812 Delany, Mary W645 Devos, Katrien M. P0576, W460, W746 da Silva, Luiz Otavio Campos P0289 De La Salle, Tignegre Jean-Baptiste Dewar, Ken P1183 da Silva, Naiara Milagres Augusto P0231 P0784, W767 Dey, Shatovisha P0414 da Silva, Poly Hannah P1019 Delauriere, Laurence P0066 Deyholos, Michael P1039, P1043, Da Silva-Linge, Cassia P0916 Delaye, Luis P0746, P0750 P1086, W290, W291 Datema, Erwin P0940, P1189 de Leon, Natalia W184 Deys, Kathleen W422 Datla, Raju W035 DeLeon, Teresa P0488 Dhakal, Smit P0625 Datson, Paul W013 Delgado, Juan V W442 Dhaliwal, H.S. P0622 Datta, Swapan K P0783, W009, W212 Delgado, Melissa Kaye P0413 Dhanapal, Arun Prabhu P0716 Daum, Chris W567 Delgado-Salinas, Alfonso P0746, P0750 Dhandapani, Vignesh W102 Davassi, Alessandro P0553 Della Rocca, Gianni W308 Dharmaraj, PS P0788, W212 Davey, Chris P0028 Delledonne, Massimo P0587, P0753, Dhekney, Sananand A P0881 Davidson, Bob W818, W819 P0893, P0902 Dhillon, Braham W351 Davidson, William S. P0235 de los Campos, Gustavo W389 Dhillon, Narinder P0941 Davies, Kevin P0972 Del Terra, Lorenzo W179 Dhingra, Amit P0146, P0858, P0899, Dávila, Guillermo Fuentes P0594 DeLuca, Thomas H. P0981, W263 P0912, W467 Davis, Brian W. W133 Del Valle Echevarria, Angel W545 Dhorne-Pollet, Sophie P0171 Davis, Charles C P1086 Demars, Julie W151 Dhugga, Kanwarpal P0015 Davis, Emily P0374 deMena, Janet P0401 Di-Palma, Federica P1114 Davis, Richard V.N. P0121, P1150 Démene, M.N. W324 Dias, Cristiano Villela W115 Davis, Theodore B P0050 De Meyer, Geert P1173, W383 Dias, Elaine S. P0948, W182 Davitt, Jack P0969, W304, W312, W878 Demorest, Zachary W600 Diaz, Federico P1040 Davy, Marcus W013, W331 Dempewolf, Hannes W395 Díaz, Francisca P. P1029 Dawe, R. Kelly W581 Deng, Cecilia H. P0972, W013 Diaz, Rodrigo W640 Dawson, Andrew M. P0676 Deng, Ying P0935 Diaz-Sala, Carmen P0982 Dawson, Eric P1113 Deng, Zhanao P0924, P0927, P1058, Dickerson, Julie P0737, W607 Dawson, William P0434 W550 Dickey, Alexia P1098 De-la-Hoz, Juan Fernando C24 Denis, Marie W554 DiCuccio, Michael C04, P1142 Deal, Karin R. P0574, P0577, W460, Denny, Roxanne P0771 Didion, Thomas W433 W474 Denoyes, Béatrice P0920, W324 Diesh, Colin C02, P0432, P1154, W411 Deal, Roger B. W356 Denver, Colin A. P0107 Diesh, Colin M. P0267, P0268, P1117 Dean, Deborah P0881, W547 dePamphilis, Claude P1078, W618 DiFazio, Stephen P0003, W008, W315, Dean, Lisa W392 DePauw, Ron M. P0588, P0620 W720 DeBarry, Jeremy W485 De Pessemier, Jérôme W266 Di Gaspero, Gabriele W186 De Bei, Roberta P0877 Der, Josh P1085 Digel, Benedikt W888 Debener, Thomas W551 Der, Joshua P. P1078, P1082, P1086, Di Guardo, Mario W329 De Beukelaer, Herman P1173, W383 W618 Dijkhuizen, Laura P1084 Debladis, Emilie W552 Dereeper, Alexis P0944, P1111 Dilda, Francesca P0313 de Both, Michiel P0940 Derevnina, Lida P0460, P0472, P1013, Dilkes, Brian P. W588 de Both, Michiel TJ W122 W436 Dilla-Ermita, Christine Jade P0489 Dechow, Chad P0276, W136 Dermawan, Hugo W813 Dillman, Adler P1020 Decker, Jared P0275 Derr, James N. P1022 Dimalanta, Eileen T P0043, P0050 Decker, Jared E. P0280, P0290, P0302, Der Sarkissian, Clio P0324 Dinesh-Kumar, S.P. W674 P0326, W154, W252 Descombes, Patrick W180 Ding, Shou-Wei W733

312 Ding, Yiliang P0836, W792 Drayton, Michelle P0107 Echeverry-solarte, Morgan P0615 Dinkins, Randy P0193, P0197 Dreisigacker, Susanne W774 Eckalbar, Walter L. P0116, P0445 Dinneny, Jose P1016 Drew, Robert P0255 Ecker, Joseph W358 Diop, Ndeye Ndack W761 Drewe, Philipp P0145 Eckert, Andrew J. W572 Dirlewanger, Elisabeth W334 Dreyer, Léanne L. P0065 Eddy, Alison P0343 Distelfeld, Assaf P0572, P0575 Dridi, Sami P0173, W671 Edger, Patrick W101, W632 Divers, Thomas J P0338 Driscoll, Carlos A. W127 Edriss, Vahid P0659, P1055 Dlugosz, Elizabeth M. P0021, P1091 Droc, Gaëtan P0944, W714 Eduardo, Iban P0915 Do, Duy N. P0352 Drouilhet, Laurence W151 Edwards, David P0469, P0590, P0778, Dobbels, Austin A. P0701 Droz, Jean-Marie P0179 P0782, P0824, W014, W471, W604, Doblin, Monika S. P1184 Drummond, Marcela Gonçalves W109 W763 Dobon-Alonso, Albor W603 Du, Chunguang W867 Eeuwijk, Fred E. van P0001, W308, Doddamani, Dadakhalandar P0211, Du, Dongliang P0924, P0926 W316 P0778, P0783, W009, W763 Du, Xiaoyun P0926 Ehrenmann, François W795 Dodds, Ken W146, W390 Du, Yu-su W703 Einhorn, Todd P0146 Doebley, John P0520 Duan, Weike P0815 Eisley, Chris P0225 Dogramaci, Munevver P0157 Dubcovsky, Jorge C18, P0575, P0637, Eizenga, Georgia C. P0490, W010 Doherty, Colleen J W101 P1027, W032, W033, W183, W393, El-Hout, Nael P0009 Dohm, Juliane C. P0746 W462, W603, W879 El Baidouri, Moaine W628 Dohse, Cassandra Anne P0681, W539 Dubreuil, Pierre C15, P1128 Elbeltagy, Ahmed R. W026 Doi, Koji P1148 Dubrovsky, Joseph G. P0034, P0222 Eldridge, Mark D.B. W635 Dolezal, Marlies A. P0285, P0287 Dufayard, Jean-François P0944 Eliades-Becker, Stacie H. P0111 Dolezel, Jaroslav P0086, P0191, P0195, Dugan, Shannon W068 Elias, Sabrina Moriom P0508 P0582, P0586, P0587, P0589, P0590, Dugas, Diana V. P0764, P0775 Ellis, Danielle P1060 P0591, P0658, W014, W210, W460, Duguid, Scott P1039, P1043, W291, Ellis, Shona P1086 W471, W886 W294 Ellison, Amy P0233, W041 Domingues, Douglas S. P0213, W180 Duijvesteijn, Naomi W157 Ellison, Melinda J. P0378, P0380 Dondini, Luca W326 Duitama Castellanos, Jorge A. C24 Ellison, Shelby P1077, W219 Dong, Jiangli P0131 Duke, Sara W010 Ellison, Shelby L. W222, W250 Dong, Taoran W746 Dukowic-Schulze, Stefanie P0533, Elsadr, Hanny P0913, W328 Dong, Xiangshu P0831 P0534 Elsen, Jean-Michel P0423 Donmez, Dicle P1101 Duncombe, Jillian L P0300 Elser, Justin L. P0872 Donnini, Domizia P1037 Dunham, Rex P0245 Elshafei, Adel A. P0627 Donnison, Iain P0028 Dunislawska, Aleksandra P0428 Elsik, Christine G. C02, P0267, P0268, Donofrio, Nicole P0757 Dunn, Nathan A C02, P0432, P1154, P0432, P1117, P1154, W411 Donoso, José M. P0915 W411 Emediato, Flavia L. P0945 Doohan, Fiona P1090, W463 Dunnell, Kelsey L. P0978 Emiliani, Giovanni P0001, W316 Dooley, Rion C23, P0790, P0792, W059 Dupanloup, Isabelle P0324 Ence, Daniel D. W524 Dopazo, Joaquin W164 Dupont, Christopher L. P0930 Endelman, Jeffrey P0840, P0841, W738 Doré, Joël P0363 Duran, Chris P1145, P1171 Endo, Takashi R. P0671, W880 Dorlhac de Borne, François P0869 Durand, Céline P0597, W473 Engineer, Cawas P0806 Dorn, Kevin M. P0835 Durand, Eleonore P0796 Engle, Taylor P0374 Dornbusch, Tino P0054 Durand, Sophie W421 English, Adam C. W139, W453, W861 Doron-Faigenboim, Adi W227 Durand-Gasselin, Tristan W557 Engstrom, Kayla P0533 Dorrestein, Pieter W678 Durward-Akhurst, Sian Ann P0317 Enk, Jake W236, W238 dos Santos Fernandes, Luciel W116 Dvorak, Jan P0577, W188, W460, W474 Enns, Richard M. P0169, P0310, W142 Dossett, Michael P0923 Dweikat, Ismail P0556 Epperson, William P0167 Doty, Sharon L. P0981, W263 Dwiyanti, Maria S. P0489 Epstein, Lynn W603 Doucet, Aurelien J. W131 Dyck, Jim P0682, W536 Erb, Ionas P0746, P0750 Douches, David P0842, P0843, W248, Dyer, John W086 Erice, Gorka P0517, P0538 W738 Dzahini-Obiatey, Henry W112 Erickson, Galen P0016 Dougherty, Laura P0895 Dzakula, Zeljko J. P1186 Ermini, Luca P0324 Douglas, Carl W320 Dzama, Kennedy P0292, P0293 Ernst, Catherine W. W831 Douglas, Gavin W894 Dzierzon, Helge P0972 Ernst, Cathy P0225, W643 Doulis, Andreas P0845 Dziuba, Piotr P0303 Esch, Maria P1155 Douthe, Cyril W308 Dzomba, Edgar F. P0384, W443 Eshel, Orly W044 Dowd, Patrick F. P0027 D’Hont, Angélique W552 Eskipehlivan, Senem W088 Dowling, Charlie P0019 Eaglen, Sophie P0286 Eskridge, Kent P0556 Doyle, Jeffrey J. P0699 Ebata, Toshinobu P0492 Esquerré, Diane P0392 Dozzi Tezza, Renata Izabel P0184, Eber, Frederique W796 Estellé, Jordi P0363 P0931 Eberth, John Edmund P0339 Estill, Katy P0415 DP, Biradar P0954 Ebitani, Takeshi P0495 Ethe-Sayers, Scott W088 Drabo, Issa P0784, W766, W767 Ebrahimzadeh, Hassan P0115 Eudes, François P0635 Drake, James P0097, W089 Echeverria, Dimas P0755 Eujayl, Imad W807

313 Eulgem, Thomas P0140 Federizzi, Luiz P0682, W536 Fisher, Ann P0873 Eun, Chang-Ho P0928 Fedorowicz-Stronska, Olga P0188 Fisk, Scott P0673 Evans, Dyfed P0162, P1007 Feed Efficiency Consortium W140 Fister, Andrew W117 Evans, Jay D. P1118 Feeley, Kevin H. P0695, P0735 Fitzpatrick, Matthew W257 Evans, Joseph W567 Fei, Shui-zhang P0131 Fitzsimmons, Carolyn P0165 Evans, Katherine M. C13, P0888, P0894 Fei, Zhangjun P0440, P0909, W225, Flachowsky, Henryk P0897, P0900, Evans, Luke W008, W720 W226, W227, W229 P1104 Eveland, Andrea L. W404, W498 Feldman, Max J P0518, P0569 Fleck, Neil D. P0981, W263 Evenhuis, Jason P. P0254 Fellers, John P0189, W352 Fleming, Allison P0283 Eversole, Kellye P0571, W172, W284 Felton, Gary W287 Fleury, Delphine W884 Evrard, Aurelie W031 Feng, Chao P0094 Flexas, Jaume W308 Ewers, Brent E. W101 Feng, Jiuhuan W595 Flicek, Paul P1002, P1114 Ewing, Aren M. P1014 Feng, Kai P0217 Flinn, Paul P0181 Excoffier, Laurent P0324 Feng, Lihua P1027 Flook, Josh P0523 Eyzaguirre, Raul P1040 Feng, Xiaoxiao P0221 Florea, Liliana P1164 Ezura, Hiroshi P0850, P0860 Fennell, Anne P0873, W675 Flores, Raphael C15, P1128, W421, FAANG Consortium, The P1114 Fenwick, Paul P0602, W465 W478, W504 Fabre, Stéphane W151 Ferchaud, Stephane P0361 Flury, Christine P0281 Fack, Veerle P1173, W383 Ferguson, Armenia A. W870 Fobert, Pierre P0635 Fahima, Tzion P0575, P0611, P0636, Ferguson, Erin P0033, P0035 Fobis-Loisy, Isabelle P0796 P1027, W473, W603 Ferguson, Morag P1071, W126 Fodor, Agota P0880 Fahlgren, Noah P0686, W096 Ferlanti, Erik C23, P0790, P0792, W059, Foerster, Hartmut P0129 Fahrenkrog, Annette M. P0979 W410, W876 Fofana, Bourlaye P0160 Fahrenkrug, Scott C. W150 Fernandes, José R.A. P0089 Fogarty, Melissa C. P0681, W539 Fait, Aaron P0855, W340, W844 Fernandez, Gina P0923 Foissac, Sylvain P0392, W445, W535 Faivre Rampant, Patricia P0001, W316, Fernandez-Pozo, Noe P0129 Foley, Michael E. P0157 W795 Fernandez Gomez, Jose P0616 Folta, Kevin M. P0214, W323, W359 Fajardo, Diego A. P0770 Fernandez i Marti, Angel P0914, P0917, Fontanesi, Luca P0287, P0344, P0355, Fakhoury, Ahmad M. P0456 W196 P0443, W823 Falcão, Alexandre W002 Fernando Garcia, Jose P0271, P0301, Font i Forcada, Carolina P0914, W196 Falchi, Rachele W326 W108, W141, W155, W387 Ford, Stephen P. P0170 Falcon, Celeste Marie W220 Fernie, Alisdair R. P0753, P0855 Foresman, Bradley W538 Falk, Robert C04, P1142 Ferragonio, Pina P0585 Formey, Damien W493 Falque, Matthieu P0849, W689 Ferrandi, Chiara W111 Formighieri, Eduardo Fernandes P0007, Famula, Randi P0987, W332 Ferrarini, Alberto P0753 P0008, W553 Fan, Bin P0362, P0375, P1158 Ferrasa, Adriano P0931 Forrest, Kerrie P0639, P0641 Fan, Xing W633 Ferre, Fabrizio W106 Forseille, Li P0635 Fanelli, Flaminia P0344, W823 Ferreira, Savio S. P0011, P0549 Forster, John W297 Fang, David D. P0955, P0960, P0962 Ferreira de Carvalho, Julie W015 Forsythe, Evan S W486 Fang, Xiaodong P0274 Ferrie, Alison M.R. P0581 Fortes, Marina R. S. W149 Fang, Yongxiang P1069 Ferro, Jesus Aparecido P0184, P0931 Foschi, Stefano P0916 Fang, Zhou P0669 Ferro, Maria Ines T. P0184, P0931 Foster, Cliff E. P0027 Fantini, Oscar P0304 Feuillet, Catherine W172, W473, W691 Foucal, Adrian P0324 Faraut, Thomas P0392 Feye, Kristina W832 Foulkes, John P0057, W709 Faria, Karina de Cassia P1021 Ficco, Donatella Bianca Maria P0585 Fountain, Tara W252 Farina, Anna W019, W540 Ficklin, Stephen P. C03, C13, C14, Fourment, Joelle P0070 Faris, Justin D. P0575, P0641, P0651, P0888, P0953, P1153, W162, W571, Fowler, Ben P0257 W365 W872, W873, W874 Fowler, D. Brian P0128 Farmer, Andrew D. C11, P0690, P0693, Figeac, Martin P0796 Fox, Tim W192 P0697, P0735, P0737, P0767, P0768, Figueira, Antonio P0551 Francia, Enrico P0587, P0674 P0771, W223 Figueroa, Melania W099 Francis, David M. P0851, P0857 Farneti, Brian P0892, P0893, P0902, Filho, Jaire A. F. P0007, P0008, W553 Francis, Tammy P0635 P0903, W329 Filichkin, Sergei W099 Francisco, Perigio B P0505 Farrar, Kerrie P0028 Filipecki, Marcin P0864 Francisco-Ortega, Javier W558 Farré Belmonte, Marta P0274 Filiz, Ertugrul P1005 Franckowiak, Jerome P0678 Farrell, Jacqueline D. P0695, P0699 Filkov, Vladimir W306, W307 Franco, Jorge P0514, P0596 Farrelly, Marc P0111 Finkers, Richard P1061 Franco Garcia, Antônio Augusto P0758 Fatokun, Christian P0784, W767 Finn, Chad P0923, W335 Franje, Neil W777 Fauve, Julie W230 Finno, Carrie J. P0317, P0327, P0330, Franklin, Chris P0795 Fay, Justin P1004, W249 P0337, W272 Frascaroli, Elisabetta P0604 Fazio, Gennaro P0875, P0898 Fiore, Alessia W019, W180 Frazier, Taylor P. P0022, P0212 Fazio, Gia W085 Fiorito, Graziano P0073, W360 Frechette, Cameo P0480 Fè, Dario P1050, P1054, W427, W433 Firmino, Ana P0458 Fredholm, Merete W824 Feau, Nicolas W351 Fischer, Jeremy C27 Freeling, Michael R W629, W630, W632

314 Freetly, Harvey C. W288 Gailing, Oliver P0969, W312, W878 Gast, Fernando W178 Frelichowski, James P0964, W016, Gaitan, Alvaro W178 Gaston, Amèlia W324 W685, W848 Gaju, Reshmi P0057, W709 Gattolin, Stefano P0916 Frels, Katherine P0603, P0605 Galantino-Homer, Hannah L. P0331 Gaude, Thierry P0796 Frenkel, Zeev M. P0587, P0589, P1194, Galbusera, Peter W109 Gaudet, Denis P0467 W473, W475 Galimberti, Giuliano P0344, P0355, Gauger, Phillip C W832 Fresnedo Ramirez, Jonathan P0873, W823 Gaur, Pooran M P0206, P0209, P0781, P0887, W419 Galindo, Leonardo W290 P0782, P0783, W009, W778 Frias, Leonor P0390 Galla, Giulio W193 Gautier, Nadine P0070 Fricano, Agostino P0587 Gallagher, Joseph P. W213, W631 Gavryliuk, Olesia P0797 Frick, Michele P0467 Gallardo, Rodrigo W770 Gawronski, Piotr P0148 Friedemann, Peter D. P0523 Galliart, Matthew P0134, P1030, W639 Gazaffi, Rodrigo W002 Friesen, Ken P0181 Gallina, Sophie P0796 Ge, Song W703 Friesen, Timothy L. P0474, P0650, Gallo, Maria P0740 Gebauer, Marlene W330 P0651, P0675, P0679, W365 Gallo, Maurizio P0355 Gehan, Jackson P0139 Frigo, Erika P0287, P0288 Galpaz, Navot W227 Gehan, Malia P0686, W096, W101 Fritschi, Felix B P0716 Ganal, Martin W. P0047, P0606 Geib, Scott P0431 Fritz, Allan K. P0599, P1095 Ganatra, Mehul P0050 Gélinas, Nancy P0970 Fritz, Sébastien P0379 Gandolfi, Barbara W127, W128 Gelpi Buchaca, Josep Lluis C17, P0654 Fritz-Waters, Eric P0225, P0269, P1113, Ganji, Satish P0465 Gelvin, Stan P1099 P1157, W025, W108 Ganote, Carrie L. C27, P0075 Genestout, Lucie P0304, P0377 Froenicke, Lutz P0460, P1062, W196, Gao, Caixia W598 Geng, Xin P0243, W048 W436, W866 Gao, Dongying W866 Genomes to Fields Consortium P0516 Froman, David P. P0404, W659 Gao, Feng P0227 Genovesi, Dennis W299 Fu, Daolin W603 Gao, Guangtu P0244, P0247, P0252 Gent, Jonathan I W581 Fu, Fengli P0717, P1004, W403 Gao, Jian W588 Georganas, Evangelos W713 Fu, Haihui P0182 Gao, Lei W190 George, Andrew P0430 Fu, Weixuan P0424, W652 Gao, Lingling W491 George, Iniga S. W675 Fu, Yong-Bi P1039, W291 Gao, Peng P0635 George-Jaeggli, Barbara W682 Fuentealba, Maria P0625, P0634 Gao, Yongming W777 Georgi, L. P0995 Fuentes-Utrilla, Pablo W135 Gao, Zhi P0525, W585 Gepts, Paul P0754, W219 Fuerst, Greg P0192, W607 Garbe, John P1176 Geraldes, Armando W320 Fuganti-Pagliarini, Renata P0203 Garbe, John R. W150 Gérardi, Sébastien W319 Fujii, Kenichiro P0712, P0713 Garcia, A.P. P0426 Gershwin, Laurel P0312 Fujisawa, Takatomo C30, P1131 García, Adriana P0282, P0294 Gerttula, Suzanne W307 Fujita, Kenji P0495 Garcia, Antonio Augusto F. W002 Gessese, Mesfin P0639 Fujita, Masahiro P0492 Garcia, Gonzalo P0072 Gessler, Cesare P1104 Fujita, Pauline W892 Garcia, Jose Fernando W109 Gessler, Damian C19, W311 Fujiyama, Asao C30, P0492, P1089, García, José Luís P0746 Geurts, Pierre W849 P1131, W527 Garcia, Nathan P0533 Gezan, Salvador P0752, W221 Fukuda, Naoya P0850 Garcia-Giron, Carlos P1002 Ghadge, Amita G W718 Fukumoto, Shoma P0860 Garcia-Mas, Jordi P0746 Ghaffari, Noushin P0040 Fukuoka, Hiroyuki P0847 Gardiner, Jack C10, P0516, P1123, Ghai, Pooja W011 Fukuoka, Shuichi P0496 W487, W613 Ghan, Ryan M. W675 Fumagalli, Matteo P0323, P0324 Gardiner, Laura P0479, W268 Ghani, Saima S. P0536 Fung, Pauline P0773 Garg, Gagan W491 Gheyas, Almas P0398 Funkhouser, Scott A. W831 Garg, Neha W678 Ghose, Kaushik P0160 Funston, Rick P0296 Garg, Vanika P0211, P0781, P0788 Ghosh, Sharmila P0333, W271 Furtado, Agnelo P0486 Garner, Austin G. P0949 Giachetto, Poliana F P0289, P1170 Furtado, Edson P0458 Garner, John P1109 Giacometti, Sonia P0014 Furtado dos Santos, Rodrigo P0095, Garnett, Trevor W339 Gianoglio, Silvia P1135 P0985 Garnett, Trevor Paul W336 Gianola, Daniel W389 Furuki, Eiko P0652 Garnica, Diana W518 Gibbs, Richard A. P0073, W068, W139, Gaasterland, Terry P1159 Garreau, Hervé P0443 W360, W453, W861 Gabaldon, Toni P0746, P0750 Garrett, Karen W639 Gibon, Yves W334 Gabler, Nicholas K. W025 Garrick, Dorian J. P0281, P0297, W145 Gibson, David P1030 Gadaleta, Agata P0578, P0585, P0587 Garry, Frank P0310 Gibson, Ryan P0523 Gadau, Jürgen W524 Garsmeur, Olivier W552, W714 Gidda, Satinder W086 Gadoury, David P0873 Garvin, David F. P0133, W099 Gielen, Jan P0663, W882 Gai, Junyi P0724 Garvin, Tyler P0097 Gil, Juliana P0472 Gaiarsa, Jonas W. W819 Gas-Pascual, Elisabet P0851, P0857 Gil, Rosa Juliana P1013, W380, W436 Gaiero, Paola P0871 Gasic, Ksenija C13, P0888, W335 Gilbert, Kerri W732 Gaikwad, Kishore P0933 Gasparyan, Boris P0475 Gilbert, M Thomas P P0324 Gaikwad, Priyanka S. P0557 Gassmann, Marcus P1182 Gilbert, Robert P0009

315 Gilkerson, Robert P0307 Gonzalez, Irene P0746 Green, Richard W863 Gill, Clare A. P0278 González, Mauricio P0874 Greenberg, Anthony P1187 Gill, Kulvinder P0015, P0610, W424 Gonzalez, Michael V. P0381 Greenhalgh, Robert P0145 Gill, Navdeep P0950 Gonzalez, Rayner P0356, P0360 Greenham, Kathleen W101 Gill, Upinder S. P0774 Gonzalez-Ceron, Fernando W651 Greenspan, Alex W394 Gilmore, Barbara P0923 Gonzalez-Ibeas, Daniel P0987, P0988, Greer, Lee F. W637 Gimenes, Marcos A. P0136 W332, W569 Gregory, Brian D. W790 Gimenez, Daniele Fernanda Revoredo Gonzalez-Martinez, Santiago W634 Gregory, Richard P1069 P0184 Gonzalez-Reymundez, Agustin P1174 Grennan, Aleel P0010, W084, W814 Ginolhac, Aurélien P0323, P0324 Good, Allen W337 Gresham, Cathy W646 Gion, Jean-Marc P0989, W305 Goodrich-Blair, Heidi P1020 Gress, Laure P0361 Giorgi, Debora W019, W540 Goodstein, David M. P1124, P1126, Greve-Pedersen, Morten P1050, P1054, Giovanniello, Valentina P0585 W326, W409, W780 P1055, W427, W433 Giovannoni, James W227, W739 Goodwin, Sara W088 Grewe, Felix W543 Girard, Chloe W590 Goolsby, John W640 Griffiths, Andrew G. P0776, P0779 Gitzendanner, Matthew A P1082 Gordon, Sean W099, W566 Griffiths, Marcus P0057, W709 Giuffra, Elisabetta P0171, P0350, W445, Gordon, Vanessa S. P0009 Griffiths, Phillip P0745, W169 W535 Gore, Michael A. P0745, W208 Griffiths, Simon P0057, W709 Giuliano, Giovanni W019, W180 Gorjanc, Gregor W533 Grimwood, Jane P0699, P0707, P0965, Giusti, Juliana P0178 Gorni, Chiara P0313 W326, W529, W780, W784 Gkoutos, Georgios P1123, W487, W613 Gos, Gesseca W894 Grinberg, Nastasiya F. W430 Glass, N. Louise P0002, W349 Goss, Erica W115 Grissom, Stephanie P0333 Glenn, Mike P0875 Götherström, Anders W238 Groenen, Martien A.M. P0350, W535 Gless, Jordan P0340 Goto, Akitoshi P1148 Grohs, Cécile P0304 Glikson, Vladimir A. P1194, W475 Goto, Ronald M. P0413 Groover, Andrew W306, W307 Glover, Natasha W691 Goto, Shingo W163 Groover, Andrew T. W742 Glowaca, Katarzyna P0026, W563 Götz, Stefan P1152 Grossi-de-Sa, Maria Fatima P0966 Gmitter, Fred G. P0215, P0924, P0926, Gou, Jin-Ying W603 Grossi de Sa, Maria Fatima P0725 P0927, W162 Goubet, Pauline P0796 Grossl, Paul P1049 Go, Yun Young P0339 Gouker, Fred E. W008, W720 Grotewold, Erich P0793 Goddard, Mike E. G005, W023 Gourreau, Jean-Marie P0304 Groth, Don P0512 Godfrey, James P0279, W143 Gouzy, Jérôme P0950 Group, the AdaptMap W441 Godin, C. W324 Govindarajulu, Rajanikanth W711 Grover, Corrinne E. W213, W631 Godoy, Jayfred Gaham P0629 Gowda, Manje P0542 Gruber, Margaret Y. P0772 Godoy, José P0390 Gowda, Siddarame T. P0434 Gruissem, Wilhelm W122 Goepfert, Simon P0870 Gowik, Udo P0179 Grumet, Rebecca P0937 Goesmann, Alexander P0141 Goyache, Felix W442 Grüneberg, Wolfgang P1040 Goettel, Wolfgang P0700, W752 Gqola, Bomikazi N P0649 Grunwald, Niklaus W348 Goetz, Frederick P0256 Grabowski, Paul P0023, W567 Gu, Cuihua P0734 Goetz, Giles P0256 Graça, Clara S. P0974 Gu, Jenny P0068, P0519 Gogniashvili, Mari Z. P0583 Gradziel, Thomas M. P0917 Gu, Li-Li P0805 Gold, John R. P1025, P1033 Graebner, Ryan P0664 Gu, Liuqi P0438 Goldammer, Tom P0234 Graf, Robert P0467 Gu, Suna P0371 Goldberg, Robert B W845 Graham, Michelle A. P0193, P0699, Gu, Xi P0976, W303 Goldman, Maria Helena de Souza P0180 P0721, P0731 Gu, Xiaorong P0406 Goldman, Sam W058 Graham, Sean W P1086 Gu, Xingyou W595 Golebiewski, Marcin P0303 Gramacho, Karina Peres P0997, W120 Gu, Yong Q. P0577, P1043, W460, Golicz, Agnieszka P0469, W604 Gramzow, Lydia P0797, P1008 W474 Gomes de Sá, Pablo H. C. P0459 Grandke, Fabian P1177 Guadagno, Carmela Rosaria W101 Gómez-Orte, Eva W871 Grando, Stefania P0566 Guajardo, Joselin P0993 Gonçalves, Helena P0089 Graner, Andreas W381, W881 Guan, Feng W109 Gonda, Itay W227 Grant, David P0695, P0735 Guan, Le Luo W828 Gonda, Michael G. P0264 Grant, Joshua N. P0021 Guan, Peizhu W341 Gong, Guoyi W225 Grant, Trudi Nadia Lavinia P0881 Gubbels, Emily A. W543 Gong, Hong P0492 Grassa, Christopher J. P0950 Gubler, Frank W681 Gong, Ji-Ming P0152 Grau, Emily C19, P0988, W311, W569 Guduru, Krishna Kumar P1079 Gong, Lei W213 Gray, Dennis P0881, W547 Guédon, Y. W324 Gong, Yunchen P0773 Gray, Miranda M W639 Guerche, Claire W478 Gong, Yundeng W109 Gray, Sharon B. W356 Guhlin, Joseph P0768, P0771 Gongora, Carmenza E. W178 Graybosch, Robert P0592 Guichoux, Erwan P0989 Gonzales, Michael P0699 Graziosi, Giorgio W179 Guida, Stephanie M. P0170 Gonzales, Michael D W232 Gredler, Birgit P0281 Guignon, Valentin P0944 Gonzalez, A W221 Green, Allan W087 Guigo, Roderic P0746, P0750, W201 Gonzalez, Abiezer P0752 Green, Jonathan A. W830 Guilhabert, Magalie W285

316 Guillard, Lenaīg P0535, W262 Haiminen, Niina W357, W434 Harris, Karen W230 Guillon, Eline P0796 Haley, Scott P0634 Harrison, Bandie W714 Guiltinan, Mark W114, W117 Hall, Anthony P0479, P0573, W268 Harrison, Maria P0770 Guimaraes, Claudia W002 Hall, Brian P0431 Harrow, Jennifer C08, W371, W825 Guimarães, Patricia Messenberg P0741, Hall, Megan P0026, W563 Hart, John P0745, W169 P0743, W866 Hall, Neil P0433, P0479, P1069, W268 Hartman, Glen L W756 Guimaraes, Simone P0368 Hall, Richard P0519, P1183 Hartung, Frank W686 Guimarães, Simone E.F. P0351, P0366 Hallock, Barbara L. C27, P0075 Hartwell, James P0150, P1069 Gunasekara, Chathura P0967 Halperin, Eran W227 Has, Ioan P0526 Gundlach, Heidrun W432 Hamann, Andreas W317, W573 Has, Voichita P0526 Gunupuru, L. W463 Hambrook, David P0279, W143 Hasan, Maen P0621 Guo, Baozhu P0208, P0739, P0742 Hamelin, Richard W351 Hasbún, Rodrigo Jorge P0062 Guo, Hui W280, W583, W865 Hamerman, Inbal P0572 Hasegawa, Daniel K. P0440 Guo, Jia P0018 Hamidou, Falalou P0208 Haseloff, Jim W528 Guo, Jie W703 Hamilton, John Paul P0842 Hash, CT P0557, P0558, P0562, P0566 Guo, Shaogui W225, W229 Hamilton, Ruaraidh W450 Hashimoto, Kei P0685 Guo, Xiang W366 Hammer, Graeme L W682 Hashmi, Najeeb P1165 Guo, Yi-Ning P0784, P0785, W767 Hammer, Sabine P0373 Hassani-Pak, Keywan W808 Guo, Ying P0406 Hammond, Boyd P0849, W689 Hastie, Alex P0042, P0319, P0590, Guo, Yufang P0867 Hamon, Perla P0948, W180, W181, P1186, W014, W471, W886 Guo, Yufeng P0967 W182, W710 Hatlen, Andrea P0819 Guo, Zifeng P0606 Hamon, Serge P0948, W180, W181, Haug-Baltzell, Asher K P0402 Gupta, Namita P0060 W182 Haun, William J. W600 Gupta, Ravi P0954 Hamwieh, Aladdin P0100 Hauser, Heiko P0064 Gupta, Sarika W615 Hamzic, Edin P0423 Havey, Michael J. W545 Gupta, Thejas Makam Shivakumar Han, Bal-Kum P0938 Hawken, Rachel J. P0423, P0430 P1046, P1047, P1072, W806 Han, Bin P0492 Hawkins, Simon W P1042, W293 Gupta, Vikas P0776 Han, Fangpu P0094, P0525, W366, Hayashi, Satomi P0469, P0590, P0824, Gurtowski, James P1138, W088 W585 W014, W471, W604 Gusmini, Gabriele P0682, W536 Han, Yi P0073, W139, W360, W453, Hayashi, Takeshi P0878, P1179 Gut, Ivo P0390 W861 Hayden, Matthew W681 Gut, Marta P0390 Hanawa, Yumiko P0612 Hayden, Matthew J P0639, P0641 Guthrie, Cade W085 Handa, Hirokazu P0612 Hayes, Ben P0639, W297 Gutierrez, Alejandro P. P0235 Handa, Takashi W549 Hayes, Chad P0555, P0561, W750 Gutierrez, Lucia P1174 Handler, David C.L. W675 Hayes, Kevin R. W771 Gutierrez, Osman A. W119 Hane, David C09 Hayes, Patrick M. P0664, P0673 Gutierrez, Rodrigo A W355 Hane, James W491 Hayes, Richard D P1124, W409 Gutiérrez, Rodrigo A. P1029, W058 Hanke, Viola M. P0897, P0900 Haynes, Paul A. W675 Gutierrez-Gonzalez, Juan J P0133 Hanley-Bowdoin, Linda P1181, W267, Hays, Dirk P0634 Guttieri, Mary P0603, P0605 W741 Hayward, Alice C W796 Guttman, David P0773 Hanlon, Matt C23, P0790, P0792, W059 Hazen, Samuel P W076, W097 Guyot, Romain P0948, W180, W181, Hannoufa, Abdelali P0772 Hazzouri, Khaled Michel W894 W182 Hansen, Julie W296 He, Chunlin W761 Guzmán, Carlos P0596, P0599 Hansen, Peter J. W155 He, Fei P1138 Ha, Jungmin P0150 Hao, Jingjie P0131 He, Mingze P1123, W487, W613 Haag, Maria T. P0837 Hao, Xingjie W109 He, Qiang P0484 Haaning, Allison M. P0661 Haque, Taslima P0508 He, Sangang P0172 Haas, Matthew William P0190 Harada, John W845 He, Weiming P0783, W009 Haase, Bianca W128 Hardigan, Michael P0842, W248 He, Yanghua P0416, W643 Haberer, Georg W559 Harding, Scott A. P0976, W303 He, Yong P0588, P0620 Habib, Madhia P0946 Hardner, Craig P0894 He, Yuke P0200 Hackett, Kevin P1118 Hardy, Matt W825 He, Yuqing W683 Hadacek, Franz W189 Hare, Matthew P. W012 Healey, Adam P0994 Haddad, Gabriel W400 Harel-Beja, Rotem W227 Hearne, Sarah P0514 Haddad, Nasri P0621 Hariharan, Nivedita P1046, P1072, W806 Heaton, Michael P. W453 Hadfield, Tracy P0382 Harkess, Alex W620 Hebard, F. P0995 Hadziabdic, Denita W547 Harland, Richard M. W826 Hecht, Benjamin P0260, W638 Haegeman, Annelies W431, W564 Harlizius, Barbara P0351 Heckerman, David W818, W819 Hagen, Darren E. P0267, P0268, P1117, Harmanova, Klara P0833 Heckmann, Stefan W589 W147 Harmon, Frank P0203 Hefer, Charles A. W320 Hague, Steve P0964, W016, W685, Harmon, Stephanie P0081 Hefferon, Tim P1109 W848 Harper, Lisa C10, P1123, W487, W613 Hefner, Ethan P0340 Hahn, Michael G. W076 Harris, Donna K. P0730 Hegarty, Joshua M W033 Haile, Jemanesh K P0593, P0617 Harris, Glenn P0999, P1003

317 Hegarty, Matthew P0233, W041, W430, Hidalgo, Oriane W426 Holt, Tim P0169, P0310 W540 Hidema, Jun P0799 Holtz, Michael P0600 Hegeman, Adrian P0887, W419 Hiebert, Colin W883 Holtz-Morris, Ann P0988, W568 Heidaritabar, Marzieh P1172 Higgins, Janika P0111 Hon, Ting P0049, W360 Heiner, Cheryl P0073, P1183, W360 Hilario, Elena P0972, W013, W331 Honaas, Loren P1078 Heinig, Rebecca W119 Hilder, Cassie W085 Hong, Yeong Ho P0421 Heintzman, Peter D. W239 Hill, Josh P0040 Hong, Yeon Joo P0802 Heinze, Berthold P0982, P0991, W634, Hill-Skinner, Sarah Ellen P0183 Hong, Yue W587 W641 Hilley, Josie L. P0559 Hongo, Jorge A. P1140 Heinze, Jürgen W524 Himmelbach, Axel W363, W889 Hooi, Wei Yeng W552 Heitkam, Tony W071 Himmelbauer, Heinz P0746, P0750 Hoopen, Martijn ten W115 Hellens, Roger P. W331 Hirai, Masami Yokota P0685 Hoover, Cindi A. P0324 Heller-Uszynska, Katarzyna P0052 Hirakawa, Hideki P1121, W100 Hopper, Colleen P0052 Hellsten, Uffe W780 Hirano, Takashi P0749 Hopper, Daniel W. W675 Helm, James H. P0600 Hirao, Tomonori P0229 Hori, Kiyosumi P0056, W170 Hemeg, Hassan A. Hemeg P0471 Hirasawa, Tadashi P0497 Hori, Koichi W526 Hemmati, Melody Naghmeh P0726, Hirel, Bertrand P0535, W262 Horn, Renate P0998 P0729 Hiroi, Kenichiro P0801 Hornoy, Benjamin W319 Hemstad, Peter P0873, P0887, W419 Hirose, Aya P0712 Horsley, Richard P0672 Henderson, Ian R. W690 Hiroyuki, Ohta W526 Horvath, Aniko P0920 Hendrickson, Christopher P0146, P0858 Hirsch, Candice P0540, W184 Horvath, David P. P0157 Hendrix, Keith W392 Hirsch, Cory D. P0540, P0843, W184 Hoshikawa, Ken P0850, P0860 Henry, Christopher P1138 Hladnik, Matjaž P0885 Hosokawa, Munetaka P0865 Henry, Isabelle W717 Hlongoane, Tsepiso P0643, P0646 Hossain, Khwaja G P0623 Henry, Isabelle M. W588, W622, W742 HM, Vamadevaiah P0954 Hossain, Md. Alamgir P0505 Henry, Julie L. P0455 Ho, Chak-Sum P0373 Hossain, Md Shakhawat W846 Henry, Lucas P. P0949 Ho, Wai Kuan P1075 Hotton, Sara K. P0082 Henry, Nate W304, W878 Hoal, Eileen W109 Hou, Yanlin W366 Henry, Robert P0486, W171, W714 Hoang, Thy P1165 Hou, Zhuocheng P0175 Hentrich, Klaus P0079 Hobbs, Matthew W635 Houben, Andreas W589 Heo, Eun-Beom P0484 Hocking, Paul M. P0396, P0398 Hough, Josh W719 Heo, Kweon P0026, W563 Hodac, Ladislav W189 Hourlier, Thibaut P1002 Herai, Roberto H. P0931 Hodgins, Kathryn A. W317, W573, W893 Houston, Ross D. W046 Hérault, Frédéric P0423 Hodnett, George W640 Howad, Werner P0915 Herb, Dustin W. P0673 Hoegenauer, Kevin A. P0956 Howard, Rebecca P0079 Herbert, Denise P0141 Hoehndorf, Robert P1123, W487, W613 Howarth, Catherine P0682, W536 Herdy, Joseph R. P0120, W743 Hoerandl, Elvira W189 Howell, Elaine C. P0795 Hermans, Christian W266 Hofberger, Johannes A. W627 Howell, Tyson R. C18 Hermans, Christian RM P0809 Hoff, Jesse P0275 Howerth, Elizabeth W. W651 Hernandez, Alvaro P0031, P0046, W229 Hoff, Jesse L. W154 Høyheim, Bjørn P0237 Hernández, Carlos Moisés P0594 Hoff, Katharina W203 Hoyos-Villegas, Valerio P0716 Hernandez, David P0043, P0775 Hoffman, Gregg G. W741 Hřibová, Eva P0109 Hernandez, Georgina W493 Hoffmann, Federico G. W279 Hsieh, John CF. P0395, P0399 Hernandez, Richard Bryan P0025, W566 Hoffmann, Hermann P0011 Hsieh, Tzung-Fu W538 Hernandez Oñate, Miguel P0746 Hoffmann, Thomas P0918 Hsing, Yue-ie C. P0201, W839 Herndon, David R. P0381 Hoffmeier, Andrea P0797 Hu, Jinguo P1065 Herndon, Nicolae P0134 Hofreiter, Michael P0324 Hu, Songnian P0319 Herren, Gerhard P0648 Hojsgaard, Diego W189 Hu, Xiaoxiang P0406 Herrera, Jesus Rommel V. W109 Hok, Puthick P1129 Hu, Yan P0454 Herrera, Raul P0993, W325 Holalu, Srinidhi V. P0949 Hu, Zhiliang P1157 Herrera-Estrella, Alfredo P0746, P0750 Holdgate, Sarah P0602, W465 Hua, Jinping W215 Herrrera-Estrella, Luis P0216 Holdsworth, William L. P0744, W208 Huala, Eva P1123, P1130, W056, W487, Hertel, Klemens W791 Holl, Heather M. P0331 W613 Hertz-Fowler, Christiane P0433 Holland, Doron P0901 Huang, Bevan E P0604 Heslop-Harrison, Pat W071, W295 Hollenbeck, Christopher M. P1025, Huang, Emma W681 Hess, Jon W638 P1033 Huang, Jiaying P0702 Heuertz, Myriam W797 Holliday, Jason W317, W573 Huang, Jinming W252 Hewitt, Seanna L. P0858 Holloway, Chelsee P0169 Huang, Jiyue W584, W587, W688 Heyduk, Karolina P1017 Holm, Karl W894 Huang, Lei W703 Hibberd, Julian M P0179 Holm, Lars-Erik P0285 Huang, Lin P0028, P1027 Hickey, John W533, W763, W778 Holme, John P0079 Huang, Lin-Chien P0448 Hickey, Lee P0678 Holmes, Ian C02, P0432, P1154, W411 Huang, Linkai P0212 Hickey, Luke P0097 Holmes, Mark P0569 Huang, Linzhou W700 Hicks, Derrick W085 Holt, Carson W569 Huang, Mao P0598

318 Huang, Meng C28, P1163 Hwang, Eun-Young P0699 Iwano, Megumi P0800 Huang, Ming P0215 Hwang, Mi Sook P0220, P1087 Iwata, Hiroyoshi P0847, P1166, P1179 Huang, Pu P0570 Hwu, Kae-Kang P0862 Iyama, Yukihide P0495 Huang, S Carol W358 Hyde, John P0232, P0236 Izawa, Takeshi P0500 Huang, Tengbo P0930 Hyma, Katie P0873, P0882, W012, Izgu, Tolga P1031, P1101 Huang, Wei P0699, P0737 W419 Jääskeläinen, Marko W871 Huang, Xuehui P0492 Iamartino, Daniela P0313, W106, W108, Jabbari, Jafar P0777 Huang, Yan P0334 W109 Jabeen, Farzana P0567 Huang, Yinghua P0135, W745 Iazvovskaia, Svetlana C21, P1120 Jaccoud, Damian P0052 Huang, Yung-Fen W537, W538 Ibañez, VIctoria W164 Jack, Peter P0602, W465 Huang, Zhiyong P0274 Ibarra-Laclette, Enrique P0216 Jackson, Aaron W010 Hubbard, Allen P0401, P0408, P1150 Ibelli, Adriana Mercia Guaratini P0176, Jackson, Eric W538, W539 Huber, Dudley P0986 P0418 Jackson, Scott A. P0699, P0707, P0753, Hubner, Sariel P0611, P0950 Ibrahim, Amir P0634 W628, W866 Hucl, Pierre J. P0588 Ichihara, Hisako P1121 Jaffe, David B. P1000, W090, W274 Huddleston, John P0308 Ichinoseki, Runa P0799 Jaffrezic, Florence P0171 Hudson, Matthew E. W751 Idris, A.S. P0005 Jaganathan, Deepa P0209, P0782 Hudson, Nicholas James P0173 Iezzoni, Amy W335 Jahn, Daniela P0991, W641 Hueber, Yann P0109, P0944 Ignacio, Juan Carlos I. P0509 Jahoor, Ahmed P0659 Huefner, Neil D. W847 Illa-Berenguer, Eudald P0856 Jain, Akshay W058 Huerta-Espino, Julio P0647 Ilut, Daniel W199 Jain, Rashmi P0493, P1138 Huettel, Bruno P1084 Im, Ji-Hoon P1068, W895 Jain, Ritesh P0434 Hufford, Matthew P0529, P0531, W251 Im, Sung Oh P1087 Jaiswal, Pankaj P0872, P1123, W487, Hufford, Matthew B. P0520 Imani, Samira P0115 W613, W842 Hufnagel, Barbara W002 Imperial, Juan P0473 Jakob, Katrin W810 Hughes, Daniel S. T. W068, W139, Incerti, Ornella P0578 Jakse, Jernej P0104, P0463, P0885, W453, W861 Inche, Adam P1182 P1067 Hughes, David W808 Iñiguez, Luis P W493 Jakubiec, Jadwiga P1026 Hughes, Jennifer F P0322 Innes, Roger W. W607 Jaligot, Estelle W552 Hughes, Timothy R. W358 Inoue, Kentaro W603 Jamal Schafer, Leen C25, P1149 Huh, Jin Hoe P0132, P0196 Iorizzo, Massimo P1077, W222, W250 Jamilloux, Véronique W478 Huisman, Abe P0376, W824 International Buffalo Consortium W106, Janečka, Jan E P0322 Huits, Henk P1061 W108, W109 Jang, Geupil W708 Hulbert, Scot P0461 International Goat Genome Consortium, Jang, Hosung P0196 Hulse-Kemp, Amanda M. P0956, P0958 (IGGC) W137 Jang, Insu P1110, P1137 Humann, Jodi L. C03, P1153, W571 International Wheat Genome Sequencing Jang, Mi-So P0822, P0823 Hume, David P1114 Consortium, The P0571, W473 Jang, Woojong P1081 Hume, Rachael P0843 Iqbal, Muhammad P0536 Jang, Young-Seok P0825 Hummel, Aaron P0093 Irish, Vivian F. P0930 Jang, Young Eun P0709 Hummel, Gregoire P0039 Isaacson, Tal P0901 Jang, Yun-Jung P0938 Hummel, Iréne W308 Isgren, C.M. P0335, P0336 Janila, Pasupuleti P0208, P0739, P0742 Hummel, Tracy P0686, W096 Ishiga, Yasuhiro P0774 Jankowska, Maja W589 Hunt, Arthur P0197 Ishihara, Masayuki P0612 Jannink, Jean-Luc C09, P0614, P0647, Hunt, Toby C08, W371, W825 Ishii, Takashige W701 P0653, P0656, P1187, W501, W537, Hunter, Courtney P0343 Ishikawa, Tomomi P1148 W763, W778 Hunter, David P1129 Ishimoto, Masao P0706, P0712, P0713 Jänsch, Melanie P0900, P1104 Hunter, Wayne W064, W065, W167 Isidro Sánchez, Julio P0595 Jansen, Marcus P0054 Huo, Naxin P0221, P0577, W460, W474 Isik, Fikret P0990, P0992 Jansky, Shelley P0840, W738 Hur, Yoon Kang P0829, P0831 Iskra-Caruana, Marie-line W112 Janss, Luc L. P1050, P1054, W427, Hurni, Severine P0648, W243 Islam, Md Nurul P0069 W433 Huson, Heather J P0279, P0384, W137, Islam, Md Sariful P0955 Janss, Luc LLG. P0352 W143, W144, W155, W440, W443 Islam-Faridi, Nurul P0995 Janssen, Antoine P0940, P1189 Husted, Søren P0668 Islamovic, Emir W538 Janz, Dennis W308 Hutchins, Elizabeth D. P0116, P0445 Islas-Trejo, Alma P0310 Jareczek, Josef W213 Hutchison, Jana L W141 Ismail, Abdelbagi M. P0508, P0509 Jarquin, Diego P0708 Huteau, Virginie W796 Iso-Touru, Terhi P0284 Jarvis, Erich P0402 Huttly, Alison K. P1094, W835 Isobe, Sachiko P0056 Jasieniuk, Marie W851 Huynh, Bao Lam P0204, P0784, P0786, Ito, Kikukatsu P0154 Jasinovica, Svetlana P0033, P0035 W489, W766, W767 Ito, Yukihiro P0799 Jasonowicz, Andrew P0256 Huynh, Mark D. C07 Itoh, Hironori P0500 Jastrebski, Sara F. P0400 Huynh, Mindy P0341 Itoh, Takeshi P0511, P0749 Javornik, Branka P0463, P1067 Huynh-Thu, Vân Anh W849 Iturra, Carolina P0062 Jaxtheimer, Justin P0333 Hwa, Teh-yang P0501 Ivamoto, Suzana Tiemi P0213 Jay, Jeremy W538 Hwang, Chin-Feng P0873 Ivanov, Nikolai V. P0870 Jayakodi, Murukarthick P0437, P1081

319 Jayale, Ashwin S. P0208 Joest, Moritz W890 Juskiw, Patricia P0600 Jeanotte, Richard P0134 Joets, Johann P0070 Kabeta, Yadeta P0600 Jeddeloh, Jeffrey A. P0522 Jogdeo, Sanjuro P0968 Kacar, Yildiz P1031, P1101 Jellen, Eric N. P0681, P1044, W539 Joh, Ho Jun P1081 Kachman, Stephen D. P0367, P0374 Jellen, Rick W538 Johnson, Charles D. P0040 Kaczmarek, Malgorzata P0188 Jenkins, Jerry W305, W326, W345, Johnson, Eric T. P0027 Kadam, Suhas W706 W529, W713, W780, W784 Johnson, Evan B. P0835 Kadarmideen, Haja N. P0352 Jenkins, Johnie N P0955 Johnson, Gary S. P0388, W111, W636 Kadri, Samir M. P0177, P0439 Jenkins, Joseph W253 Johnson, Jeremy P1000, W090 Kaeppler, Shawn W184, W567 Jenko, Janez W533, W763 Johnson, Kim L. P1184 Kaga, Akito P0706, P0713, P0749 Jennings, Tara N. P0968 Johnson, Loretta C P0134, P1030, W639 Kagale, Sateesh P0581 Jensen, Christian Sig P1050, P1054, Johnson, Maren A P0623 Kage, Udaykumar P0638 P1055, W427, W433 Johnson, Patricia A. P0409 Kahla, A. W463 Jensen, Elaine P0028 Johnson, Patricia L W390 Kahles, Andre P0145 Jensen, Jens D P0659 Johnson, Rebecca N. W635 Kahraman, Abdullah W394 Jensen, Just P0352, P0659, P1050, Johnson, Rodger K. P0367 Kain, Steven R P0029 P1054, P1055, W427, W433 Joly, Jacques W334 Kajala, Kaisa W356 Jensen, Kevin P1049 Jones, Brian P0807 Kajikawa, Masataka P0939 Jensen, Philip P0898 Jones, Don C. C14, P0953, P0956 Kajita, Kei W333 Jeon, Eun-Ji P0823 Jones, James P0752, W221 Kajiya-Kanegae, Hiromi P0847 Jeong, Dong-Hoon P0498, W727 Jones, Jeryl P0387 Kakaradov, Boyko C25, P1149 Jeong, Namhee P0699 Jones, Jonathan DG P0844 Kakeda, Katsuyuki P0612 Jeong, Soon-Chun W754 Jones, Laura W418 Kalavacharla, Venu (Kal) P0024, P0623, Jeong, Won-Joong P0220, P1087 Jones, Samuel S. P1078 P0756, P0757, P0759, P1073, W402, Jerabkova, Hana P0191 Jones, Sarah I. P0205 W494 Jesenicnik, Taja P0463 Jones, Simon R. M. W438 Kalberer, Scott R. C11, P0690, P0697, Jestrow, Brett W558 Jonsson, Hákon P0323, P0324 P0735, P0737, P1123, W223, W487, Jeuken, Marieke W198 Jordan, David R. P0071, P0678, W682 W613 Jeunger, Thomas P0508 Jordan, Katherine W032 Kalbfleisch, Ted P0319 Ji, Guoli P0182 Jordan, Mark P0227, P0618 Kalbfleisch, Theodore S. P0320, P0324, Jia, Gaofeng P0101 Jordan, Marsha P0613 P0339, W276 Jia, Melissa W011 Jordana, Jordi W442 Kalderimis, Alex C23, P0790, P0792, Jia, Qidong P1009 Jorge, Pedro P0089 W059 Jia, Yulin W011 Jørgensen, Uffe W434 Kale, Sandeep P0209 Jia, Zhangcai P0943 Jorrín, Beatriz P0473 Kale, Sandip M P0782, P0788 Jian, Jainbo P0783, W009 Joseph, Batieno T. Benoît P0784, W766, Kalla, Sara E P0328 Jian, Jianbo W491 W767 Kaloshian, Isgouhi P0140 Jian, Jiang P0691 Joseph, Charles P0087 Kambiranda, Devaiah M. P0883, P0886 Jiang, Chen P0240, P0242, P0245 Josephs, Emily W894 Kamineni, Lakshmi Praveena P0401 Jiang, Fengying P0635 Joshi, Meenu P0162 Kaminuma, Eli C30, P1131, W163 Jiang, Hui P0570, P1016 Joshi, Nikhil P0327 Kamphuis, Lars W491 Jiang, Jiming P0842 Joshi, Shailesh Vinay P1007 Kanamori, Hiroyuki P0511, P0706 Jiang, Ke W615 Joshi, Trupti P0060, P0694, P0696 Kanayama, Yoshinori P0850 Jiang, Liang W700 Juanillas, Venice Margarette P0489 Kandel, Ramkrishna P1065 Jiang, Ligang P0943 Juenger, Thomas W782 Kandel, Shyam P0981, W263 Jiang, Ning W870 Juenger, Tom P1028 Kandula, Suresh Raju P1079 Jiang, Shicui P0156 Juin, Hervé P0423 Kane, Nolan P0950, W256, W849 Jiang, Yiwei W567 Juliano, Gabriela F. P0551 Kanegae, Hiromi P1125 Jiang, Zhihua P0354, P1191, W826 Julio, Emilie P0869 Kanehisa, Minoru W205 Jiao, Chen W229 Jun, YoungKeun P0896 Kang, Byoung-Cheorl P0865 Jiao, Yinping P0555, W750 Jung, Hee-Jeong P0151 Kang, Jin-Ho P0865 Jiao, Yuannian W865 Jung, Hyun Shin P1087 Kang, Jungtaek P0349 Jighly, Abdul Qader P0621 Jung, Je Hyeong P0546, P1092, W813, Kang, Kyu-Suk P0977 Jimenez, Esbal W155 W814, W833 Kang, Yang Jae P0747 Jin, Cai P0110 Jung, Je Won P0437 Kannan, Baskaran P0010, P0546, Jin, Dianchuan W583 Jung, Jungsu P0861 P1093, W625, W814, W833 Jin, Huizhe W865 Jung, Sook C13, C14, P0888, P0953, Kanno, Maasa P0852, P1122, P1125 Jin, Yue W365 W162, W872, W874 Kantar, Melda P0633 Jing, Runchun P0521 Jung, Woo-Young P0353 Kantar, Michael B. W403 Jo, Aru-Na P0977 Jungerius, Annemieke P1061 Kantarski, Traci R. P0579 Jo, Sung-Hwan P0164 Junqueira, Vinicius P0085 Kantartzi, Stella P0711, P0714 Jo, Yeong Deuk P0865 Jupe, Florian P0844 Kanth, Bashistha P0219 Jodari, Farman W010 Juretic, Nicoleta P1183 Karadsheh, Amer P0621 Joecker, Anika P1185, W313 Jurman, Irena W179 Karalius, Joseph P1156

320 Karamycheva, Svetlana C23, P0790, Kettener, Karine P0550 Kim, Kwan-Suk P0295, P0371 P0792, W059 Ketudat-Cairns, Mariena W109 Kim, Kwang-Soo P0825 Karan, Ratna P0010, P0546, W814, Keurentjes, Joost J.B. W308 Kim, Kwan Suk P0316, P0348 W833 Keyser, Matthew P0263 Kim, Kyu-Won P0484, P0510 Kardaisky, Igor P1185 Khaing, Aye Aye P0484 Kim, Kyung Do P0707, W628 Karingula, Vijay C11 Khan, Aamir W P0211, P0778, P0781, Kim, Kyunghee P1081 Karkkainen, Marko W500 P0788, P0789, W212 Kim, Maria C23, P0790, P0792, W059, Karlen, Steven D. P0027, W094 Khan, Asif P0855 W410, W876 Karmakar, Kanika W718 Khan, Awais P1040 Kim, Moon Young P0709 Karp, Peter D P0129 Khan, Azeem Iqbal P0946 Kim, Myung-Shin P0863, P0866 Karpinski, Stanislaw P0148, P1133 Khan, Muhammad Y P0536 Kim, Nam-Hoon P1081 Karthikeyan, Savita P1046, P1072, Khan, Saad M. P0696 Kim, Nam-Soo P0825 W806 Khan, Sumaiya Farah P0508 Kim, Sangmi P0164 Kassem, Abdelmajid P0711, P0714 Khan, Wasif U P0527, P0545 Kim, Sangwook P0348 Katageri, Ishwarappa S P0954 Khan, Zareen P0981, W263 Kim, Seolah P0103, P0904, P0906, Katam, Ramesh P0886 Khandakar MD, Rayhanul Kabir P0484 P0907 Kataoka, Tomomori P0056 Khateeb, Kamel P0901 Kim, Seong-U P0928 Katari, Manpreet S. W058 Khatib, Hasan P0166 Kim, Seungill P0132, P0863, P0866 Katayose, Yuichi P0706 Khatun, Amina P0371 Kim, Shinje P0822, P0823 Kato, Atsushi P0939 Khazi, Fayaz Kim, Soo-Hyung P0981, W263 Kato, Kenji W879 Khera, Pawan P0742 Kim, Sungwon P0405 Kato, Yoichiro P1085 Khodwekar, Sudhir P0969 Kim, Sunhee P0220, P1087 Katta, Krishnamohan P0778, P0781, Kholodov, Mike P1109 Kim, Tae-Ho P0164 P0782 Khoo, Choon Kiat P0398 Kim, Tae-Sung P0484, P0510 Katzir, Nurit W227, W229 Khorasani, Mahsa P0981, W263 Kim, Tae Hyun P0411, W666 Kaur, Ramanjot P0610 Kianian, Shahryar F. P0589, P0628, Kim, Won-Il P0371 Kaur, Simerjeet P0015 W544 KIM, Won- Sik P0080 Kavi Kishor, P B P0562, P0782 Kich, Jalusa Deon P0358 Kim, Wonyong P0457, W207 Kawada, Daiki P0612 Kidd, Jeffrey M. W131 Kim, Woonsu P0299 Kawahara, Yoshihiro P0511 Kiefer, Christiane P0827 Kim, Yong-Min P0863, P1110 Kawanabe, Takahiro W100 Kiggundu, Andrew P1102, W073 Kim, Yong-Yul P0977 Kaya, Erdal P1036 Kijas, James P0382, W455 Kim, Yoon-Kyeong P0103, P0904, Kayang, Boniface W770 Kijas, James W. W139, W453 P0906, P0907 Kearns, Dan P0391 Kikuchi, Kazuhiro P0058 Kimmel, Erik W421, W504 Kearse, Matt P1145, P1171 Kikuchi, Shinji P1063 Kimura, Gaku P0491 Keating, Aileen F. P0348 Kikuchi, Shoshi P0499 Kinder, Bradley P0968 Keating, Shaunagh P0057, W709 Kilaru, Aruna W082 King, Andrew G. W635 Keays, Maria P0224, W372 Kilian, Andrzej P0052, P0514, P0590, King, Ian P. P0057, P0683, P0684, Kedra, Darek P0746 P0594, P0920, P1129, W502 W709 Keeble-Gagnere, Gabriel W472 Kilian, Benjamin P0858, W881 King, Julie P0057, P0683, P0684, W709 Keele, John W. P0264 Killian, Andrzej W461 King, Matthew P0950 Keinath, Melissa P0446 Kilper, Roland P0078 King, Ross D. W430 Keliet, Aminah W421 Kim, Bellbull W212 King, Zachary Raymond P0728 Kelleher, Neil L W350 Kim, Changhoon W212 Kingham, Bruce P0759 Keller, Beat P0641, P0648, W243 Kim, Changsoo W810 Kippes, Nestor W879 Keller, Nancy P W350 Kim, Daeil P0103, P0904, P0906, P0907 Kiranmayee, K N S Usha P0562 Keller, Stephen W257, W318 Kim, Do-Soon P0723, P1068, W895 Kirkpatrick, Brian W. W148 Kelly, Laura J. W313 Kim, Eui-Soo P0348, P0421, W026, Kirst, Matias P0095, P0979, P0985 Kelly, Matthew P0366, P0368, W149 W150 Kissel, Ewaut W070, W679 Kelton, David P0298 Kim, Heebal P0291, P0325, P0357, Kitajima, Akira W163 Kemena, Carsten W524 P0365, P0450 Kitajima, João Paulo P0466 Kenigswald, Merav W227 Kim, Hyun Hee P1081 Kitashiba, Hiroyasu P0820, W100 Kenney, Brett P0248 Kim, HyunJung P0490, P0861 Kitts, Paul P1105, P1115, W273, W515 Kent, Matthew P. P0244 Kim, In-Jung P0928 Klaas, Manfred W357, W434 Kent, Matthew R W581 Kim, Jaebum P0274 Klagges, Carolina W330 Kenyon, Lawrence P0941 Kim, Jaemin P0357 Klatt, Simone W189 Keough, Brendan P0035, P0071 Kim, Jae Woo P0312, W147 Klein, Antonia W524 Keppel, Cassie P0084 Kim, Jae Yoon P0546, W814, W833 Klein, Patricia E. W640, W682 Kerhornou, Arnaud P1119 Kim, Jay W. W524 Klein, Robert Richard P0071 Kern, Colin P1116, W279 Kim, Ji-Eun P0164 Kleinhofs, Andris P0658 Kersey, Paul J. C17, P0654, P1119, Kim, Jihun W212 Klevorn, Claire W392 P1132, W414 Kim, Jin-Won P0723, W895 Klingeman, William W547 Kershner, Kevin P0066 Kim, June-Sik P0132 Klink, Vincent P. P0691 Kessler, Michael W797 Kim, Ki Sun P0132 Klocova, Barbora P0589

321 Kloiber-Maitz, Monika P0553 Korlach, Jonas W180 Kumar, Vinay P0206, P0208, P0781, Klopp, Christophe W557, W593 Korneliussen, Thorfinn S. P0323, P0324 P0788, P0789, W212 Klos, Kathy L. W538 Korniviel, Pavel W010 Kumar, Vivek P1138 Klosterman, Steve W436 Korol, Abraham B. P0575, P0589, Kumari, Sunita P1119, P1138 Knaak, Carsten P0553 P0611, P1194, W473, W475 Kumar TK, Santosh P0343 Knapp, Mary P1030 Kosky, Anthony P1165 Kumke, Katrin W589 Knapp, Steve P0950 Kost, Thomas D P1104 Kumpatla, Siva P0523 Knauf, Vic W085 Kosuge, Kazumasa P0713 Kunde-Ramamoorthy, Govindarajan Knight, Emilie P0683 Koszewski, Nick J. P0395, P0399 W567 Knol, Egbert P0366, P0368, W157 Koter, Marek D. P0864 Kunduru, Sravani P1079 Knol, Egbert F. P0351 Kottenhagen, Nina P0797 Kuo, Richard P0393, P0398 Knorst, Verena P1051, W300 Kouakou, Koffie W112 Kupcsik, Laszlo W266 Knoth, Jenny L. P0981, W263 Kozik, Alexander P1011, P1062, W196, Kurata, Nori C30, P0492, P1131 Knox, Curtis P0033 W380 Kurczynski, Krzysztof P1129 Knox, Paul W808 Kozyra, Katarzyna P1026 Kuriakose, Boney P0954 Knox, Ron E. P0588, P0617, P0620 Krafsur, Greta P0310 Kuroda, Yosuke W805 Koba, Takato P1063 Kraiser, Tatiana P1029 Kurokawa, Ken W526 Kobayashi, Asako P0056 Krajewski, Pawel P0188, W504 Kuruganti, Sowmya P0988, W569 Kobayashi, Fuminori P0612 Kramer, Melissa W088 Kurz, Samantha P0179, P1084 Kobayashi, Masaaki P0852, P1125, Kramer, Michael W843 Kushalappa, Ajjamada Chengappa P1161, P1166 Kranis, Andreas W533 P0638 Kobayashi, Shozo P0878 Krasileva, Ksenia C18, W033, W183 Kusi, Francis P0784, W766, W767 Koch, Jennifer W304 Kremer, Antoine W795 Kusumi, Kenro P0116, P0445, P0448 Kochian, Leon W002, W854 Kreplak, Jonathan W210 Kutzler, Michelle P0315 Koczyk, Grzegorz P0188 Krerowicz, Amanda P0033, P0035 Kuznetsov, Anatoliy C04, P1142 Koeck, Astrid P0283, P0298 Kresovich, Stephen P0552 Kwak, Myoung-hai W219 Koeda, Sota P0865 Krishnakumar, Vivek C23, P0003, Kwak, Woori P0365 Koester, Dietrich P0064 P0790, P0792, W059, W315, W410, Kwan, Yen Yen W552 Koganti, Prasanthi P. P0250 W720, W876 Kwicklis, Madeline P0533 Koh, Chushin W809 Krishnamoorthy, Sriram P0415 Kwon, Hyung Wook P0437 Koh, Chu Shin P0580 Krishnamurthy, L P0206, P0209 Labadie, Karine P0597, W210, W473, Koh, Hee-Jong P0494 Krishnavajhala, Aparna P0691 W795 Koh, Yeon-Ju P0938 Krom, Nick P0137 Labate, Carlos A. P0112, W837 Kohel, Russell J. P0961 Kropp, Jenna P0166, W021 LaBlanc, Chantal W267 Kojima, Mikiko W734 Krueger, Robert R. P0947, W559, W560 La Borde, Niegel D P0556, P0564 Kokulapalan, Wimalanathan (Gokul) C10 Krugman, Tamar P0447, P0611, P0636, Labra, Massimo P1037 Kol, Guy W227, W715 P1027 Lachagari, V B Reddy P0954 Kola, Gurulakshmi P0568 Krutovsky, Konstantin V. P0984 Lachagari, Vijay Bhaskar Reddy P1079 Kolb, Fred L. W538 Kryschenko, Alyona W093 Lachance, Hannah P0296 Kölliker, Roland P1051, W300 Kubalakova, Marie P0086, W014, W471 Lacrima, Katia P0587 Köllner, Bernd P0234 Kubo, Yasutaka P0850 Laerke, Poul E W434 Koltes, James E. P0225, P0269, P1113, Kudapa, Himabindu P0206, P0209, LaFave, Matthew C. P1139 P1157, W025, W108, W147 P0211, P0782, W004 Lahaye, Marc W334 Komatsu, Kunihiko P0712, P0713 Kudo, Toru P1125 Lai, Jinsheng P0520, P0525 Komatsuda, Takao P0612, P0660, Kudrna, Dave W860 Lai, Song-Jia W109 P0671, W880 Kuehn, Larry A. P0264, W288 Lai, Zhao P0950 Kommadath, Arun W828 Kugler, Karl G. P0130, P0631 Lai, Zhou W851 Kommineni, Radhika P0567 Kühn, Carsten P0234 Laidò, Giovanni P0585 Kondo, Motohiko P0497 Kuhn, Gerrit W180 Laimbeer, Parker P0842, P0845 Kondo, Satoshi W526 Kuhn, Jonas P1145, P1171 Lake, Douglas F. P0116 Kong, Byung-Whi P0173, W671 Kuhn, Robert W891 Lakey, Nathan W556 Kong, Wenqian W748, W896 Kujawa, Steve P0030 Lakhanpal, Neha P0832 Konkin, David J. F. P0580 Külahoglu, Canan P1084 Lakhssassi, Naoufal P0710, P0732, Kono, Atsushi P0878 Kumar, Ajay P0589, P0590, P0615 P0733, W405 Kono, Thomas J. Y. P1004, W403 Kumar, Akhil P0535, W262 Lalanne, Céline P0989, W593 Kono, Thomas Y. P0717 Kumar, Dibyendu P0303 Lalanne-Tisné, Guillaumme W334 Kooyers, Nicholas J. P1034 Kumar, Indrajit P0058 Lam, Ernest P0077, P1186 Kopecky, David P0195 Kumar, Krishan P0600 Lam, Quyen W085 Korban, Schuyle W756 Kumar, Sachin P0588, P0620 Lama, Martina P0916 Koren, Sergey W089, W144, W440 Kumar, Sandeep W601 Lamande, Shireen W128 Korf, Ian W535 Kumar, Santosh P1039, W291 Lambel, Shaunese W230 Korhan, Hamdullah P0957 Kumar, Satish P0622 Lamberson, William R. P0378, P0380 Koriabine, Maxim P0988, W568 Kumar, Sundip P0622 Lambert, Bart P0813 Korie, Sam P1102, W073 Lambert, Joshua W. P0334

322 Lamont, Susan J. P0121, P0394, P0395, Leal-Bertioli, Soraya C M P0136, P0741, Lee, Yun Sun P1081 P0399, P0400, P0401, P0411, P0426, P0743 Lee, Yvonne P0258 W028, W647, W770, W847 Lear, Teri P0323 Leebens-Mack, Jim P1017, P1086, Lamour, Kurt LeBoldus, Jared M. P0978 W614, W620 Lamprecht, Matt P0069 Le Bris, Philippe W094 Leeds, Timothy D. P0248, P0252, P0254 Landaeta-Hernandez, Antonio J. W155 Lecardonnel, Jérôme P0171 Leegood, Richard P0179 Landell, Marcos G. A. P0547 Leckie, Brian M. P0859 Lefaucheur, Louis P0168 Landi, Vincenzo W442 Le Cunff, Loïc P0880 Le Gall, Sophie W334 Landolin, Jane W089 Ledbetter, Craig A. P0873, P0876, W419 Le Gouis, Jacques C15, P0057, P1128, Lane, Thomas P0969, W304, W312, Ledur, Monica Correa P0176, P0418 W709 W851, W878 Lee, Alvin P0079 Lehnert, Sigrid A. P0430, W149, W152 Lang, Daniel W531 Lee, Bo Mi P0164 Lei, Li P0145 Lang, Zhihong P0520 Lee, Byungwook P1137 Leisner, Courtney P0538 Langdon, Tim W540 Lee, Chang-Yong P0484 Leisser, Willmar W002 Lange, Matthias P1155, W616 Lee, Chien-Yueh P1118 Leitch, Ilia J W426 Lange, Simone W203 Lee, D.K. P0018 Lekkala, Saradadevi W103 Langhorst, Bradley W P0050 Lee, Dooyoung P0127 Lekkala, Sivarama Prasad P0954 Langlade, Nicolas P0950, W849 Lee, Fleet N. W011 Lembke, Carolina G. P0011, W818, Langley, Charles H. P0988, W332, Lee, Geung-Joo P0092, P0219, W810 W819 W568, W569 Lee, Gung-Pyo P0938 Lemm, Jana P0047 Langridge, Peter W680 Lee, Han Yong P0153, P0812 Lemmens, Marc P0130 Lanham, Brad P1129 Lee, Hayan W088, W818, W819 Lemmon, Zachary P0520, W615 Lanini, Brenda W230 Lee, Hyeonjun P1095 Lenaghan, Scott C. P0014, P0020, Lanna, Dante P.D. P0290 Lee, Hyun-Jeong P0299 P0021, P0199, P1091, P1097 Lanteri, Sergio P1135 Lee, HyunJoo P1081 Leng, Yueqiang P0680 LaPatra, Scott P0254 Lee, Hyun Oh P1081 Lenk, Ingo P1050, P1054, W427, W433 Laperche, Anne W265 Lee, Insuk P0806 Lennon, Sarah W842 Lapierre, Catherine W094 Lee, Jayern P0709 Lenobel, Rene P0191 Larkin, Denis M. P0274 Lee, Je Min P0861 Lents, Clay A W827 Larmande, Pierre P1111, W448 Lee, Jennifer W513 Lepage, Patricia P0363 Laroche, André P0467 Lee, Jeong-Hee P0164 Le Paslier, Marie-Christine P1015 Larrain, M. Angelica P0260 Lee, Ji-Young W708 Lepelley, Maud W180 Larroque, Hélène P0383, W444 Lee, Ji Yeon P0403 Leplat, Florian P0668 Larson, Brandon W002 Lee, Jiyoon P0196 Le Provost, Grégoire P0974, P0989, Larson, Steve P1049 Lee, Jonghoon P1081 W593, W795 Larsson, Anders P1086 Lee, Ju-Hoon P0450 Leroy, Philippe W460 Larzul, Catherine P0361, P0363 Lee, Jung-Hun W708 Leroy, Thibault W795 Lascoux, Martin W894 Lee, Jungmin P0923 Leslie, Charles W188, W332 Lassaline, Mary P0341 Lee, Jun Heon P0353, P0373 Leslie, John F. P0470 Lassiter, Kentu P0173 Lee, Junki P1081 Lestari, Puji P0494 Laten, Howard M. P0704 Lee, Lan-Ying P1099 Lesur, Isabelle W593, W795 Latorre, Claudio P1029 Lee, Michael W146 Letellier, Thomas C17, P0654, W421, Lau, Bayo W090 Lee, Michael A W390 W478, W504 Laudencia-Chingcuanco, Debbie P0128 Lee, Myoung Hee P0164 Le Thiec, Didier W308 Launay, Amandine W421 Lee, Rian P0751, P0755, P0757 Leung, Hei W521 Laurent, Thibaut P0869 Lee, Sang-Myoung P0371 Leung, Kevin P1165 Lavelle, Dean P1062, W196, W380 Lee, Sanghyeob P0013, P0102 Lev, Shery W227 Laviola, Bruno Galvêas P0007, P0085 Lee, Scott J W076, W097 Levi, Amnon W229, W230 Lavulo, Lopeti T. P0107 Lee, Seunghee W860 Lewin, Harris W141 Lawit, Shai J. W192 Lee, Soonbong P0822, P0823 Lewin, Harris A. P0274 Lawley, Cynthia W106 Lee, Suk-Ha P0709, P0747, P0762 Lewinsohn, Efraim W227 Lawrence, Carolyn J. C10, P0516, Lee, Sung-Il P0825 Lewis, Christopher P0385 P1123, W487, W613 Lee, Sung-Jin P0403 Lewis, David P0972 Lawrence, Gary W. P0691 Lee, Sung-Jong P0666 Lewis, Edwin E. P1020 Lawson, Nicholas L P0456 Lee, Tae-Ho W810 Lewis, Suzanna C02, P0432, P1154, Lawton-Rauh, Amy W897 Lee, Tae-Jin W267, W741 W411 Laybats, Anthony W557 Lee, Tae-Young P0723 Lewsey, Mathew G W358 Lazo, Gerard R. W063 Lee, Taein C03, C13, C14, P0888, Lexer, Christian W320, W634, W797 Le, David P1165 P0953, P1153, W571, W874 Leyser, Ottoline P0687, W095 Lea, Peter J. P0535, W262 Lee, Tak P0806 Li, An P0319 Leach, Jan E. W066, W172, W284, Lee, Vivian P0802 Li, Changxi P0165 W855 Lee, William P0424, W652 Li, Chao P0240, P0242, P0671, W880 Leakey, Andrew D.B P0517, P0518, Lee, Young-Sang P0484 Li, Donghui P1130, W056 P0538, P0569 Lee, Yunjoo P0494 Li, Fay-Wei P1082, P1085, P1086

323 Li, Feng P0820, P0821, W099, W100, Libershteyn, Vlad P1165 Liu, Mingjun P0172 W105 Lichtenzveig, Judith P0468, W210 Liu, Patrick C25, P1149 Li, Feng-Peng P0484, P0510 Lidzbarsky, Gabriel P0636 Liu, Ping-Li W703 Li, Gang W127 Liechty, John C19, P0988, W311, W569 Liu, Rong W703 Li, Guanglin P1009 Liechty, Zach S. C07, P0963 Liu, Ruyu W109 Li, Haizhen P0943 Lien, Sigbjørn P0244 Liu, Sanzhen P0183 Li, Heng W238 Lightfoot, David A. P0536, P0711, Liu, Sarah W094 Li, Hongjie P0208 P0714, P0720, P0726, P0729, W168 Liu, Shikai P0240, P0242, P0245 Li, Hongyao P0525 Lillehoj, Hyun S. P0421 Liu, Shiming P0710, P0732, P0733 Li, Huihui P0594, W461 Lillis, Jacquelyn P0873, P0889, W419, Liu, Shuangshuang P1023 Li, Ji P0936 W422 Liu, Shudong P0172 Li, Jia P0346 Lillis, Jacquelyn Ann P0876 Liu, Shuyang W474 Li, Jialian P0362 Lim, Sooyeon P0450 Liu, Shuyu P0625, P0634 Li, Jiaming P0908 Lim, Sung Don P0218 Liu, Sixin P0244, P0247, P0252 Li, Jiayang W700 LIM, Sung DON P0150 Liu, Siyao W563 Li, Jin W600 Lim, Yong Pyo P0826, W102, W466 Liu, Tingsong C16, P0794 Li, Jingping W583 Lima, Joni E. P0551 Liu, Wansheng P0170, P0276, W136 Li, Jun C16, C20, P0688, P0794 Lin, Chung-cheng P0941 Liu, Wing Yee P0468 Li, Kun W603 Lin, Han P1118 Liu, Xiaolei P0362, P0375, P1158, Li, Lei-Ting P0905, P0910 Lin, Jean-yu P0941 P1193 Li, Li P0183, W468 Lin, Jer-Young W845 Liu, Xin P0702, P0783, P1085 Li, Lingyan P0319 Lin, Jun-Wei P1118 Liu, Xu P0842 Li, Lydia P0186 Lin, Li P0142, W005 Liu, Xue W700 Li, Meng P1193 Lin, Meng-ying P0501 Liu, Xuejiao P0936 Li, Pingchuan P1039, P1043, W188, Lin, Yann-rong P0501 Liu, Yalin P0525, W585 W291 Lin, Yao-Cheng P0544 Liu, Yang P0696 Li, Q. Quinn P0182 Lin, Zibei W297 Liu, Yao P0362 Li, Rui W826 Linares, Angela M. W169 Liu, Yi P0811 Li, Ruiqiang W225 Lindblad-Toh, Kerstin P1000, W090 Liu, Yong-Xin P0525 Li, Wenrong P0172 Lindow, Steven E. P1103 Liu, Yue P0221, W861 Li, Xiang P0967 Lindquist, Erika A. P0003 Liu, Yun-Hua P0964, W016, W685, Li, Xiangfeng P0274 Lindquist, Ingrid E. P0170 W848 Li, Xianran P1010, W747 Lindtke, Dorothea W797 Liu, Yunfeng P0705, W755 Li, Xiaobo W081 Ling, Kai-Shu P0440, W229 Liu, Zhaohui P0679 Li, Xiaonan W102 Linz, Luke P0084 Liu, Zhilong P0172 Li, Xiaoping P0570 Lippman, Zach W615 Liu, Zhixin P1071 Li, Xinyun P0369 Liptak, Stephanie P0113 Liu, Zhiyong W460, W474 Li, Xiu-Qing W283, W744 Lipzen, Anna P0570 Liu, Zongrang P0700, W752 Li, Xuehui W296 Lisch, Damon W629 Livingstone III, Donald W119 Li, Xuesong W078 Liston, Aaron P0065, P0775, P0968, Lloyd, Johnny P1123, W487, W613 Li, Yan P0724 W711 Lo, Sassoum P0784, P0785, W767 Li, Yang P0724 Liu, Bang P0354 Loaec, Mikael W478 Li, Yanjun P0702 LIU, Bin P0319, W275 Loan, Nguyen To W149 Li, Yinghui P0705, W755 Liu, Bo P0958 Lobaton, Juan David P0761 Li, Yun P0242, P0245 Liu, Cheng P0671, W880 Lobo, Francisco P. P0008, P0231, Li, Yutao P0430 Liu, Chu-Yin P0862 P1021, P1140 Li, Zenglu P0730, W776 Liu, George P0277, W107, W150 Locovare, Heather P0068 Li, Zhenni P0535, W262 Liu, George E. W141 Lodes, Michael J. P0033, P0035 Li, Zhi-Kang W773, W779 Liu, Haibo P0347 Logacheva, Maria D. P1059 Li, Zhijian T. P0881 Liu, Haiping P0125 Lohmiller, Leslie P0849, W689 Li, Zhikang W777 Liu, Hui P0546, W814, W833 Lohmueller, Kirk E. P0388, W636 Liachko, Ivan W144, W200, W440 Liu, Jiayin P0341 Lokhande, Hrishikesh C11, P0697 Liang, Chengzhi P0055 Liu, Jing P0354 Lomsadze, Alexandre W203, W204 Liang, Haiying P0969, W312, W878 Liu, Jinpeng P0444 Lonardi, Stefano P0658, P0784, W767 Liang, Xuanqiang P0208, P0742 Liu, Jinze P0334 Londo, Jason P0873, P0882, W012, Liang, Xue P0319 Liu, John P0239, P0240, P0242, P0245, W419, W422 Liang, Yanchun P0060 W055 Long, Anthony D. W637 Liang, Yong W460, W474 Liu, Juge P0724 Long, Hai W474 Liao, Boshou P0208 Liu, Jun P0147 Long, Stephen P0010, P0026, W084, Liao, Yu-Chen P0862 LIU, LI P0865 W563, W814 Liaubet, Laurence P0168 Liu, Li-yu Daisy P0501 Longhi, Sara P0893 Libault, Marc P0707, W492 Liu, Lijun W306 Lonsdale, Andrew P1184 Liberal González, Isabel María P1032 Liu, Ling P0524 Loopstra, Carol P0984, P0987, P0988, Liberatore, Katie L. P0628, W544 Liu, Melissa Huang P1182 W569

324 Lopes, Francisco Claudio da Conceicao Lv, Yuqi P0364 Magni, Federica P0587, P0591, W179 P0550 Lv, Zhenling P0525 Magris, Gabriele W186 Lopes, Marcos S. P0366, P0368 Lyda, Sydney P0886 Mahama, Anthony Assibi P0482 Lopes, Marcos Soares P0351 Lykkjen, Sigrid P0342 Mahato, Ajay Kumar P0933 Lopes, Paulo S. P0351, P0366, P0368 Lynaugh, Hannah J. P0340 Mahfouz, Magdy W510 Lopes, Uilson Vanderlei P0997, W120 Lyons, Eric C22, P0402, W460, W486 Mahoney, Aaron P0461 Lopez, Francisco W395 Lyons, Leslie A W128 Maia, Ivan G. P0210, P0808, P0996 Lopez, John P1109 Lyons, Leslie A. P0389, W127, W130 Main, Dorrie C03, C13, C14, P0744, López, Pedro Figueroa P0594 Lyons, Russell W149 P0763, P0888, P0894, P0953, P0961, Lopez-Cruz, Marco W389 Lysak, Martin A. P0814, P0827, P0833, P0988, P1153, W162, W209, W322, Lopez-Valle, Mayra P0222 W579 W326, W335, W569, W571, W872, Lopez Vernaza, Manuel A. P1090 M, Milner Kumar P0954 W873, W874 Lor, Vai W246 Ma, Hai-Ling P0152 Maiti, Rama P1109 Loraine, Ann P0922 Ma, Hao P0250, P0251, W052 Maiwashe, Azwihangwisi P0293 Lorberg, Sarah P0469 Ma, Hong W584, W587, W688 Majid, M.A. P0995 Lorenz, Aaron P0556, P0665, P0708, Ma, Jian P0274 Majumdar, Rajtilak P0876, P0889 W778 Ma, Jianxin P0699, P0705, W755 Makarevitch, Irina P0480, P0481, P0540, Loreto, Francesco W308 Ma, Li P0273, P1176, W150 W260, W694 Lotterhos, Katie W317, W573 Ma, Li-Jun W353, W435 Malakar, Ayan P0720 Lou, Ping W101 Ma, Shisong W674 Malchiodi, Francesca P0298 Lou, Qunfeng P0936 Ma, Wei W589 Maldonado, Jonathan P0912 Louis, Alexandra C06, P1006 Ma, Xu P0221 Maldonado dos Santos, Joao V. P0696 Lovatt, Alan W430 Ma, Xue-Feng P0028 Malek, Joel A. W559, W721 Lovci, Michael T. C25, P0012, P1149 Ma, Yu P0744, W208 Malenica, Ivana P0448 Loveland, Jane C08, W371, W825 Ma, Zhengqiang W460, W474 Malig, Maika P0308 Lovell, John T. W194 Maass, Erika P1078 Malik, Richard W128 Loving, Crystal W832 Mabiala, André W305 Malik, Sachin P0622 Low, Eng-Ti L W556 Macaya Sanz, David W634 Malitic-Layaoen, Geraldine Ann V. P0489 Lowe, Todd M. P0391 Maccaferri, Marco P0575, P0604, P0637, Mallick, Swapan W238 Lowry, David P1028 W393 Malolepszy, Anna P0692, W506 Lowy, Ernesto P0746 MacCallum, Iain P1000, W090 Maloof, Julin N P0817 Lozito, Maria Luisa P0578 Macchietto, Marissa P1020 Maloof, Julin N. W103 Lu, Fachuang W094 Mace, Emma P0071, P0678, W682 Maltais, Véronique P0970 Lu, Fei P0513, W123 Macedo, Leonardo Lima Pepino P0966 Mamidi, Sujan P0751, P0755 Lu, Fu-Hao W030 Macfarlane, Andrea W430 Manahan, Ted W142 Lu, Hong P0521 Mach, Núria P0363 Mancini, Melina C. W821 Lu, Huangjun P1064, P1065 Machado, Adriane P0052 Mandakova, Terezie P0814, P0827, Lu, Jerry P1119 Machado, Marcos Antonio P0929, P0833 Lu, Mengmeng P0984 P1103, W161 Mandel, M. Alejandra P1071 Lu, Xin P0098 Macharia, Godwin P0644 Mandrou, Eric W305 Lu, Yue P0110, P0640 Machida, Gregorio P0532 Manechini, João R. P0547 Lubberstedt, Thomas P0477 Machita, Kayo P0706 Mangenot, Sophie W473 Luby, Chris D P0305 MacHugh, David E. P0324 Mangu, Venkata R. P0194, W898 Luby, James J. P0873, P0887, W335, Macias Gonzalez, Miguel W196 Manns, David P0873, W419 W419 Mack, Savannah P0343 Manohar, Surendra S P0739 Lucas, Mitchell R. P0204, P0784, P0785, Mackenzie, Sally W490 Manoharan, Muthusamy P0759, P1073 P0786, W489, W767 MacLachlan, P.R. W035 Manrique Carpintero, Norma C. P0842 Lucas, Stuart James P0591 Maclean, Paul W020 Mansanet, Camille W151 Lucretti, Sergio W019, W540 MacLeod, James N. P0320, P0324, Mansfeld, Ben P0937 Lucy, Matthew C. W025 P0334, P0444 Mansfield, Anna Katherine P0873 Lun, Yanni W032 MacNeil, Michael D. P0293 Mansfield, Shawn D. P0027, W307 Lund, Mogens S P0272 Madder, Kayla M P0300, P0305 Mansveld, Sandra W122 Lundquist, Judith P0323 Madoui, Mohammed-Amin W210 Mantovani, Eder Eduardo P0615 Lundqvist, Udda P0671, W880 Madsen, Ole P0350, P0366, P0368, Mantovani, Paola P0604 Lunney, Joan K. P0225, P0372, P0373, W535 Mantri, Nitin W469 W828 Madubanya, Lebogang Angelo P0541 Manunza, Arianna P0360, W442 Luo, Chenglong P0406 Madzima, Thelma F. W581 Manzella, Daniele W395 Luo, Hong W562 Maeda, Andrea BV P0956 Mao, Linyong W229 Luo, Ming-Cheng P0574, P0590, P0658, Mafi Moghaddam, Samira P0751, P0755, Mao, Long W460, W474 W014, W188, W460, W471, W474 P0760 Mao, Yongjiang W109 Luo, Song W600 Magalhaes, Jurandir W002 Mapholi, Ntanganedzeni Olivia P0293 Lupiani, Blanca W847 Magbanua, Zenaida P0465 Maranas, Costas D. P0535, W262 Lutz, Joseph W538 Magbanua, Zenaida V. P0462 Marancik, David P. P0254 Luzzatto, Tal W678 Magill, Clint W436 Marand, Alexandre P0842

325 Marande, William P0070, P0796 Mateo de Arias, Mayelyn W190 McGinnis, Karen M. W581 Marchand, Gwenaelle W849 Mather, Diane P0652 McGrath, J. Mitchell W808 Marchant, Blaine P1082 Mathew, Lisa Sara W559, W721 McGuire, Pat W188, W460 Marco, Mariotti W201 Mathis, Luc W600 McHale, Leah P1011, W380, W403 Marcolino Gomes, Juliana P0203 Matika, Oswald P0293 McHoull, Barry P1182 Marelli, Jean-Philippe W115, W116, Matsaunyane, Lerato Bame Tsalaemang McIntosh, Robert A. P0648 W118 P0848 McIntyre, Lauren M. P0538, W800 Margarido, Gabriel Rodrigues Alves Matsuda, Tomoki P0800, P0801 McKay, John P0798 W818, W819 Matsumoto, Takashi P0485, P0511 McKay, John K. W194 Maria, David P1040 Matsunaga, Hiroshi P0847 McKay, Stephanie P0296, W147 Maria, SR P0563 Matsunaga, Koji P0229 McKinnon, John J P0305 Maricle, Brian P1030, W639 Matsuno, Kyohei P0491 McLaren, Graham W503, W761 Marino, Celso Luis P0550 Matsuoka, Makoto P1122, P1125 McLysaght, Aoife W576 Markelz, Cody P0817, W103 Matsushima, Mai P0800, P0801 McNally, Kenneth L. W699 Markey, Alysta P0269 Matthews, Benjamin F. W602 McNeece, Brant T. P0691 Markham, Emily P1181 Matthews, David P0653, W501, W537 McNellis, Timothy P0898 Markiewicz, Augustyn W504 Matthews, David E. C09, P0656, W765 McQuistan, Adam P0266 Marks, M. David P0835 Matthews, William Charles P0204 McWilliam, Sean W149 Marley, Kara B. P0264 Mattison, Ashley Jean P0560 Mdladla, Khanyisile P0384, W443 Marone, Daniela P0585 Matvienko, Marta P0034, P0222, P0956 Mead, David P0033, P0035, P0071 Marot, Guillemette P0171 Maughan, Jeff P1044, W539 Meadows, Jennifer W134 Marquand, Elodie P1015 Mauleon, Ramil P. P0489 Mebalo, Joyce P0643 Marques-Bonet, Thomas P0324, W131 Max-Aguilar, Adriana P0259 Medina, Tatiana Boluarte P0846 Marraccini, Pierre W180 Maximova, Siela W117 Medina-Espinoza, Jesus A. P0259 Marroni, Fabio W186 May, Bernie P. P0249 Medrano, Juan F. P0310 Marsden, Clare W636 May, Catherine P0445 Meerow, Alan W. W558 Marsden, Clare D. P0388 May, Sean Tobias W057 Meeta, Madhu W603 Martelli, Pier Luigi P0344, W823 Mayer, Danielle P0901 Meghen, Ciaran P0111 Martelli, Pierluigi P0575 Mayer, Klaus F. X. P0130, P0576, Megias, Manuel P0233, W041 Martienssen, Rob W556 P0631, W030, W432, W460, W559 Megraw, Molly W401, W840 Martienssen, Robert W267 Mayes, Mary Sue P0269 Meheust, Raphael P0796 Martin, Fergal P1002 Mazourek, Michael P0744, P0745, W208 Mehra, Surbhi P0683 Martin, Frank P0460, W436 Mazza, Raffaele W106 Mehrotra, Sudeep P1183 Martin, Guillaume W714 Mazzoni, Gianluca P0344, W823 Mehtre, Shivaji P0557 Martin, Olivier C. P0849, W689 Mbenoun, Michael P0458 Meier, Cecile W634 Martínez, Amparo W442 McAssey, Edward V. P0952 Meinhardt, Clinton W706 Martinez, Paula P0469 McAuslane, Heather P1065 Meinhardt, Lyndel W114, W115 Martinez-Garcia, Pedro J P0987, P0988, McCabe, Chantal E. P0731 Meinke, David P1123, W487, W613 W332, W568, W569 McCallum, Emily J W122 Meisel, Barbara P0532 Martínez-Gómez, Pedro W326 McCarthy, Fiona P0116, P0402, W480 Meisel, Lee W326 Martins-Lopes, Paula Filomena P0089 McCarthy, Fionna W646 Mejía, Nilo P0874 Marubbi, Thea P0433 McCartney, Curt A. P0618, W538 Meksem, Khalid P0710, P0711, P0714, Mas, Justine P0070 McClean, Phillip P0751, P0755, P0757, P0732, P0733, W509 Mascarenhas, Athena D. P0704 P0760 Melka, Hailu Dadi P0295 Mascher, Martin P0670, W363, W713, McClung, C. Robertson W101 Melloni, Maria N.G. P0547 W886, W889 McCombie, W. Richard W088, W460 Melnick, Rachel W114 Mashanov, Vladimir W760 McCormick, Ryan F P0559 Memili, Erdogan W022 Mashingaidze, Kingstone P0537, P0541 McCouch, Susan P0489, P0490, P1187, Menda, Naama P1123, P1160, W487, Maslov, Sergei P1138 W010, W764 W613, W724 Mason, Andrew S. P0396 McCourt, Peter P0773 Mendioro, Merlyn S. P0509 Mason, Annaliese S. W796 McCoy, AM P0342 Mendoza, Kristelle M. P0405 Mason, John G P0138 McCue, Kent F. W063 Meng, Yan P0192 Masonbrink, Rick W213 McCue, ME P0318, P0321, P0332, Mentaberry, Alejandro P0746 Massaccesi, Luisa P1037 P0335, P0336, P0342 Menzel, Gerhard W071 Massey, Laura W230 McCuiston, Jamie P1093, W625 Mercado, Noe B. P0159 Massi, Andrea P0575, P0604 McDaneld, Tara G. W139 Merceron, Guillaume C15, P1128, W421, Massirer, Katlin B. P0012 McDaniel, Stuart W530, W619 W504 Mastrangelo, Anna-Maria P0575, P0585, McDowell, John W674 Merchant, Nirav C22, P0696 P0587 McEwan, John W020, W135, W146, Merchuk, Lianne P0636 Masuko-Suzuki, Hiromi P0799, P0800, W390 Mercière, Maxime W557 P0801 McFerson, Jim W335 Mergoum, Mohamed P0615 Masumba, Esther A. P1070 McGee, Rebecca P0744, P0763, W208, Merot l'Anthoene, Virginie W180 Matala, Andrew P. W638 W209 Merriwether, Andrew P0315 Mateescu, Raluca P0297, W145 McGill, Jodi L. P0119 Mertz Henning, Liliane M. P0203

326 Mesnard, François P1042, W293 Mishina, Kohei P0671, W880 Morandini, Piero P0014 Messing, Joachim W185 Mississo, Essivi W112 Moran Lauter, Adrienne N. P0721 Metz, Richard P P0040 Mistry, Divya W607 Morcia, Caterina P0674 Meuwissen, Theodorus M. W042 Misztal, Ignacy W650 Moreira, Luis P0089 Meyer, Rick P0734 Mitani, Nobuhito P0878 Moreira, Walter C23, P0790, P0792, Meyer, Susan E. P0455 Mitchell, Rob P0016 W059 Meyers, Blake C. P0707 Mitchell, Sharon E. P0873, P0882, Moreira Alves, Gustavo W796 Meza, Leticia P0613 W012, W747 Moreland, Chris P0083 Mezey, Jason P1187, W010 Mittal, Shipra P0774 Moreno, Carole R. P0377, P0379, W452 Mezzullo, Marco P0344, W823 Miyao, Akio P1148 Moreno, Javier Ireta P0594 Mhiret,, Worku Negash W295 Miyatake, Koji P0847 Moreno, Marcia P0550 Miao, Jiamin P0212 Mizrachi, Eshchar P0973 Mores, Nelson P0358 Micali, Sabrina W326 Mizrachi, Ilene C21, P1112, P1120, Moretzsohn, Marcio de Carvalho P0741 Michael, Todd P. P0519 W512 Morgan, Ed P0972 Michal, Jennifer W826 Mochida, Keiichi P0154, P0685 Morgan, Theodore P1030, W639 Michaud, Réal W296 Mochizuki, Takako C30, P1131 Morgante, Carolina P0743 Micheli, Fabienne P0997, W120 Mock, Steve C23, P0790, P0792, W059 Morgante, Michele P0001, P0575, Michelmore, Richard P0460, P0472, Mockaitis, Keithanne P0988, P1151, P0587, W179, W186, W308, W316, P1011, P1013, P1062, W196, W380, W569 W326 W436, W866 Mockler, Todd P0686, W096 Mori, Satomi P0706 Michelotti, Vania P0587 Mockler, Todd C. P0519, P0923, W099, Morimoto, Kyoko P0852, P1125 Michno, Jean-Michel P0722, W621 W101 Morishige, Daryl P0559, W174 Michot, Pauline P0304 Moen, Thomas P0244 Mormede, Pierre P0361 Michotey, Célia C15, P1128, W421, Moglia, Elia P0014 Moroldo, Marco P0171 W504 Mohamad, Arif P0005 Morrell, Peter L. P0669, P1004 Mickelson, JR P0318, P0321, P0332, Mohammadi, Mohsen P1004 Morris, Adam P0436 P0335, P0336, P0337, P0342 Mohamoud, Yasmin A. W559, W721 Morris, Chris A. W148 Micklem, Gos C23, P0790, P0792, W059 Mohan, Amita P0610 Morris, Geoffrey P0023, P0552, P0554, Micklos, Dave W258, W693 Mohd Din, A.S. P0005 P0563, W749 Miclaus, Mihai P0526 Mohebbi, Mohammad P0976, W303 Morris, J. Bradly P1080 Midorikawa, Takafumi W603 Mohellibi, Nacer C15, P1128, W421 Morrison, Neil P0433 Miglior, Filippo P0283, P0298 Moine, Deborah W180 Morrissey, Rhiannon P0113 Mihelich, Nicole T. P0158 Moioli, Bianca W109 Morse, Alison P0538 Mikel, Mark A. P0031, W184 Moir, Richard P1145, P1171 Mortazavi, Ali P1020 Miklas, Phillip P0751 Mok, Young Geun P0196 Moscou, Matthew J. W099 Milanesi, Marco W109 Mokhber, Mahdi W109 Moser, Michel P0868 Milano, Elizabeth R. P1028 Molina, Antonio W442 Moses, Daniela P0969 Milc, Justyna P0674 Molnár, István P0582, P0586 Moska, Magdalena P1026 Miller, Allison W420 Molnar-Lang, Marta P0582, P0586, Moskvin, Oleg V. P0027 Miller, Donald P0319, P0323, P0340 W361 Moss, Dustin P0258 Miller, Jason R. C23, P0765, P0771, Monaco, Marcela Karey P1119 Moss, Shaun P0258 P0790, P0792, W059, W061, W410, Moncada, Pilar W178 Moss, Steven P0113 W876 Monfort, Amparo P0918 Mostafa Emam, Ahmed P0442 Miller, Marcia M. P0413, W662 Monsma, Scott P0033, P0035, P0071 Motamayor Arias, Juan Carlos W116, Miller, Marisa Elena P0628, W544 Monson, Melissa S. P0405 W118, W119 Miller, Melanie M. P0454 Montague, Michael J W127 Motawei, Mohamed P0627 Miller, Michael P0244 Monteiro-Vitorello, Claudia B. P0466 Motes, Christy P0767 Miller, Phillip S. P0367 Monteros, Maria J. P0767 Mott, Richard P0145 Miller, Robert N. G. P0945 Montes, Christopher P0517, P0538 Mottiar, Yaseen P0027 Miller, Tamara Iva P0748, W219 Montes, Christopher M. P0727 Mouille, Grégory P0535, W262 Milner, Sara G P0575, P0604, P0657, Montesinos-Lopez, Osval A. W389 Mourão, Gerson B. P0290 W508, W705 Moore, A. P0335, P0336 Mousel, Michelle P0381 Min, Sun-Kyung P0484 Moore, Gary P1118 Moussa, Ihab Mohamed P0453, P0471 Minamikawa, Mai P0847 Moore, Graham P0683 Moustafa, Khaled A. P0627, P0632 Ming, Ray W180, W822 Moore, Laura P1123, W487, W613 Movassat, Maliheh W791 Ming, Yao W491 Moore, Stephen W149 Mower, Jeffrey P. W543 Minnaar-Ontong, Adré P0646 Moose, Stephen P. W075, W084, W338 Moya, Ernesto Solís P0594 Minniefield, Bre P1003 Moraes, Fabrício E. P0112, W837 Moya-León, Maria A. P0993, W325 Minoche, Andre E. P0746 Moraga, Carol P1029 Moyers, Brook P0950 Miquel, Martine P0535, W262 Moraga, Roger P0776, P0779 Mraz, Amy P0030 Mir, Héctor Eduardo Villaseñor P0594 Morales, Melvin P. W155 Msoffe, Peter W770 Mireau, Hakim P0663, W882 Morales-Cruz, Abraham W418 Muchadeyi, Farai C. P0384, W443 Mirebrahim, Hamid P0658, P0784, W767 Moran, John V. W131 Muchadeyi, Farai Catherine P0292 Mishima, Kentaro P0229 Moran, Paloma P0233, W041 Muchero, Wellington P0217, W783

327 Mudadu, Mauricio A. P0290 Mutka, Andrew P0093 Nave, Moran P0572 Mudge, Joann P0170, P0533, P0534, Mutryn, Marie P0424, W652 Nawrath, Christiane P0671, W880 P0736, P0765, P0767, P0770, P0771 Mutschler, Martha A. P0859 Nayak, Spurthi P0209 Muehlbauer, Gary J. P0658, P0661, Mutton, Miguel Angelo P0184 Nayak, Spurthi N. P0208, W811 P0672, P0717, P1004, W713 Muylle, Hilde W431, W564 Nayidu, Naghabushana K. P0143 Muela, Víctor Manuel Hernández P0594 Muzny, Donna M. P0073, W068, W139, Nazzicari, Nelson W296 Mueller, Hans-Georg W460 W360, W453, W861 Ndeve, Arsenio Daniel P0204, P0784, Mueller, Laurence D. W637 Mwacharo, Joram W026 P0785, P0787, W767 Mueller, Lukas P0129, P1160, W162, Myburg, Zander P0973 Neale, David C03, C19, P0987, P0988, W180, W722, W723, W724 Myer, Phillip W288 P1153, W311, W332, W568, W569, Mueller, Ulrich W098 Myers, Jim P0745, P0751 W571 Mueth, Nicholas Arthur P0461 Myers, Matt P0552 Neary, Joe M. P0169, P0310 Muffato, Matthieu C06, P1006 Myka, Jennifer P0323 Negoro, Satomi P0847 Mugo, Stephen P0532 Mysore, Kirankumar S. P0137, P0774, Negri, Barbara W002 Muhairwa, Amandus W770 P1099 Neibergs, Holly L. P0312 Muhantay, Gemenggul P0319 N'Diaye, Amidou P0575, P0593, P0617, Neinhuis, Christoph P1078 Muhire, Gervais P0165 W035 Nelson, Andrew D W486 Muir, William P0689, P1180, W669 Naazie, Augustine W770 Nelson, C. Dana P0995 Mujahid, Nisma P0343 Nabemoto, Moe P0799, P0800, P0801 Nelson, Matthew N. P0777, W491, W796 Mukherjee, Meenakshi P0387 Nadon, Brian P0699 Nelson, Randy P0705, P0727, W706, Mukherjee, Shreyartha P0137, P1048 Naegele, Rachel P0842 W755 Mullaart, Erik P0286 Nag, Rishi P1002 Nelson, Rex P0735, P1123, W610, Mullen, Jack L. P0798 Nagabhyru, Padmaja P0193 W613 Mullen, Robert W086 Nagahora, Mika P0491 Nelson, Rex T. P0695, W487 Müller, Andreas W804 Nagai, Chifumi W119, W822 Nelson, Susan M. W190 Muller, Emmanuelle W112 Nagano, Atsushi J. P1166 Nemeth, Csilla P0684 Muller, Robert P1130, W056 Nagappan, Jayanthi P0464, W556 Nepomuceno, Alexandre P0203 Mullet, John P0559, P0560, W174, W682 Nagarajan, Ragupathi P0610 Nesi, Nathalie W265 Mullins, Ewen P1090, W463 Nagasaki, Hideki C30, P1131, P1136 Nettleton, Dan P0183, P0192, P0522, Mulvane, Joseph P1119 Nageswara-Rao, Madhugiri P0764, W025, W607 Mummenhoff, Klaus P0797 P0775, W851 Neuffer, Barbara W894 Mun, Myeong-il P0829 Nagy, Istvan W432 Neugebauer, Kerri P0189, W352 Mun, Terry P0692, W506 Nagy, Mate P0060 Neupane, Anjan P0474 Munafo, Daniela B P0050 Nah, Gyoungju P0723, P1068, W895 Neves, Leandro Gomide P0979 Munghate, Rajendra P0562 Naik, B Jayanna P0568, P1079 Newcomb, Richard D. W331 Munhoz, Carla de Freitas P0074 Naithani, Sushma P0872, W417, W838 Newman, Sheryl-Anne N W390 Muniswamy, S P0788 Naito, Ken P0749 Newton, Linsey P0842 Munoz, Patricio R. P0095, P0925, P0985 Naito, Yuki C12 Ngo, Hanh P0972 Muñoz-Amatriain, Maria P0204, P0658, Najar, Fares Z. P0965 Ngo, Thanh C. W474 P0784, W767 Nakamura, Kyoko W558 Nguyen, Hanh P0705, W623, W755 Muñoz-Mejías, Eva W442 Nakamura, Yasukazu C30, P1121, Nguyen, Henry T. P0060, P0694, P0696, Munoz-Torres, Monica C. C02, P0432, P1131, W163 P0702, W001, W706 P1154, W411 Nakamura, Yukino P1141 Nguyen, Nhung T P0407 Munyaneza, Joseph E. W063 Nakashima, Jin P0774 Nguyen, Thi Thuy Nga C06, P1006 Munz, Jack W083 Nakaya, Akihiro P1121 Nguyen, Thuy N P0950 Mur, Luis P1023 Nakayama, Thiago J. P0203 Nhlapo, Thulile F. P0063 Murad, Rabi P0483 Nakazato, Takeru C12 Nice, Liana P0672 Murali, Shwetha C. W068, W139, W453, Nakazono, Mikio P0800 Nichols, Krista M. P0256 W861 Nam, Bora P0339 Nichols, Richard A P0819 Muranaka, Toshiya W734 Nambara, Eiji P1161, W596 Nicholson, Paul P0027 Murat, Florent P0584, W795 Nambisan, Suran R P1047 Nicolas, Alain P0088 Murata, Kazumasa P0495 Nanasato, Yoshihiko P0939 Nicolas, Stephane C15, P1128 Murata, Mayara Mari P0931 Nandety, Aruna W078 Nicolazzi, Ezequiel Luis W108, W109, Muren, Eva P1000 Nanduri, Bindu P0167, P0343 W137, W441 Murphy, Daniel N. P1002 Nanjappa, Gnanesh W538 Niebauer, Megan P0033, P0035 Murphy, Rebecca W174 Nanni, Laura P0753 Nielsen, Kare Lehmann P1185 Murphy, Terence C04, C21, P1120, Naoumkina, Marina P0960, P0962 Nielsen, Rasmus P0323, P0324, W398 P1142 Narayan, Jitendra P0274 Nierop, Klaas G.J. P1084 Murphy, Terence D. P0791, P1105, Narum, Shawn P0081, P0260, W638 Nieu, Rita P1016 P1115, W273, W515 Nascimento, Eliza P0741 Nigam, Shyam N P0739 Murphy, William J. W127, W129 Nascimento, Leandro Costa P0543 Niknam, Vahid P0115 Murray, Armond P0574, W474 Naumann, Julia P1078 Nikoh, Naruo C30, P1131 Murray, Kevin D. P1023 Navarini, Luciano W179 Nikolau, Basil P0134 Murray, Seth W685 Navarrete-Estrada, Georgina W493 Nikoloski, Zoran P0753, P0855

328 Nikoumanesh, Kianoush P0807 Oettler, Jan W524 Orendovici-Best, Teodora P0969, W304, Nilausen, Chelsea P0970 Ogiso-Tanaka, Eri P0749 W312 Nilsen, Kirby W035 Oh, Chang Sik P0861 Orlando, Ludovic P0318, P0320, P0323, Nimmakayala, Padma W228, W229 Oh, Sewon P0103, P0904, P0906, P0324, W237 Ning, Li P0406 P0907 Oropeza-Aburto, Araceli P0216 Ning, Yuese W606 Oh, Youngjae P0103, P0904, P0906, Orrù, Luigi P0587 Niraula, Prakash P0691 P0907 Orsi, Ricardo O. P0177, P0439 Nirmal, Ravi Chandrabhan P0609 Ohlrogge, John W082 Ort, Don P0010, W084, W814 Nishimura, Minoru P0706 Ohlson, Breck P1165 Ortiz-Barrientos, Daniel W633 Nishio, Takeshi P0820, W100 Ohta, Tazro C12 Ortiz-Monasterio, Ivan P0594 Nishiyama, Tomoaki P1089, W527 Ohtaka, Kinuka W526 Osaka, Masaaki P0800 Nissila, Eero P0489, W500 Ohyama, Akio P0847 Osborne, Colin P. P0179 Niu, Baixiao W584 Ohyama, Kiyoshi W734 Osborne, Edward J. P0145 Niu, Lizhu P0375 Ohyanagi, Hajime P0492, P0852, P1122, Osborne, Ruth P0613 Niu, Pengxia P0371 P1125, P1161, P1166 Osbourn, Anne W520 Nizampatnam, Narasimha R P0718, Oikeh, Sylvester P0532 Osei-Amponsah, Richard P0359 W626 Ojha, Sohita P0404, W672 Osier, Michael V. P0889 Nobile, Paula M. P0180 Okada, Miki W851 Osipowski, Paweł P0032, P0476 Noblick, Larry W558 Okamuro, Diane Jofuku W233 Osman, Kim P0795 Noce, Antonia W442 Okamuro, Jack K. P0682, W536 Osorio, Sonia P0919 Noirot, Céline W593 Okano, Katsunori P0713 Osorno, Juan P0752, P0760, W221 Noli, Enrico P0575 Okazaki, Kazuyuki W805 Ostevik, Kate W633 Nolte, Arne P0447 Okono, Fred W761 Otani, Masato P1161 Nonaka, Keisuke W163 Okubara, Patricia P0461 Othman, Abrizah P0005 Nonneman, Dan P0370, W827 Olalere, MO P0563 Ott, Alina P0522 Nookiah, Rajanaidu W556 Olatoye, Olalere Marcus P0554 Ouadi, Sonia P0870 Norelli, John L. P0875, P0897, W335, Oldroyd, Giles G006 Ougham, Helen W842 W592 Oliker, Leonid W713 Ounit, Rachid P0658 Norton, E.M. P0336 Oliphant, Tebogo P0646 Ouyang, Shuhong W460, W474 Nosaki, Denise P0458 Oliveira, Karine M. P0550 Ouzunova, Milena P0553 Notredame, Cedric P0746, P0750 Oliveira, Priscila S.N. P0290 Oveido, Oliver P0533 Nou, Illsup P0151, P0829 Oliveira Veras, Adonney A. P0459 Overholt, William A. W640 Nouroz, Faisal W071 Oliver, Rebekah W538 Owens, Chris P0884 Novelli, Valdenice Moreira P0929, W161 Oliver, Richard P. P0652 Owens, Gregory L. P0950, P0951 Nsabiyera, Vallence P0639 Ollhoff, Alexandrea P0655 Ownley, Bonnie W547 Ntshakaza, Pamella P0649 Olmstead, James P0925 Owusu, Sandra P0969 Nuessly, Gregg P1065 Olmstead, Mercy C13, P0888, W162, Ozaki, Soichi P0852, P1125 Null, Daniel J. P0273 W335 Ozias-Akins, Peggy P0208 Nunes, Alessandra Vasconcellos P0808 Olohan, Lisa P0479, W268 Özkan Ünal, Emel W109 Nunome, Tsukasa P0847 Olsen, Christian P1145, P1171 Ozyigit, Ibrahim Ilker P1005 Nuraliev, Maxim S. P1059 Olsen, Michael S. P0532 P. VanTassell, Curtis P0277, W106, Nurkowski, Kristin W317, W573 Olsen, Odd-Arne P0631 W108, W137, W141, W144, W150, Nusbaum, Chad W090 Olson, Andrew P1119 W440 Nussbaumer, Thomas P0130, P0660 Omari, Khaled P0772 Pacheco Cruz, Igor P0916 Nuzhdin, Sergey V P0780 Omoteno, Motoyasu P0495 Padilha, Joseane P0136 Nuzhdin, Sergey V. W394 Omrak, Ayca W238 Padmakshan, Dharshana W094 Nwosu, Chigozie V. W116 Onda, Yoshihiko P0154, P0685 Page, David C P0322 Nyachiro, Joseph P0600 Ono, Eiichiro P1041 Page, Justin T. C07, P1044, W214 Nyaku, Seloame T. P0965 Ono, Hiromasa C12 Pagotto, Uberto P0344, W823 O'Connell, Jeffrey R. P0273 Onogi, Akio P0847 Paiva, Jorge A P P0974 O'Connor, Devin P0687, W095 Oo, Win Htet P0484 Paiva, Samuel W142 O'Donovan, Claire P1108, W373 Ooi, Leslie Cheng-Li W556 Paiva, Samuel Rezende P0231, P0289 O'Geen, Henriette W851 Oono, Youko P0511, P0612 Pál-Gábor, Henrietta P1029 O'Neill, Rachel W808 Ooshima, Sayaka P0860 Palhares, Alessandra P0466 Oard, James P0512 Opitz, Lennart P1167 Palkopoulou, Eleftheria W238 Oatway, Lori P0600 Oppert, Brenda P0181 Pallara, Patrizia W019 Oberlander, Kenneth P0065 Orabi, Jihad P0659 Palle, Sreenath R. P0984 Obermoeller, Dawn P0436 Oraguzie, Nnadozie C13, P0888 Palmer, Mitchell V. P0119 Ocampo, Fabiola P0210 Orbovic, Vladimir P0930 Palti, Yniv P0244, P0247, P0252, W053 Ocarez, Nallatt P0874 Orchard, Caleb P0851 Pan, Yong-Bao P0098 Ocheya, Silvano P0625, P0634 Orchard, Sandra W368, W374 Pandey, Manish K P0208, P0739, P0742 Ochiai, Takayuki P0497 Ordway, Jared W556 Pandolfi, Jose Rodrigo P0176 Oddy, V. Hutton W135 Orellana, Ariel W326 Pandya, Ravi W818, W819 Oellrich, Anika P1123, W487, W613 Paneru, Bam D P0248, P0253, W047

329 Pang, Edwin W469 Patterson, David J. W154 Pereira, Bruna F.T. P0547 Pang, Junling P0525, W585 Patterson, Thomas P0523 Pereira, Luiz F. P. P0213 Pang, Wenxing W102 Paul, Rachel E P0569 Pereira, Maria Leonor P0089 Pang, Xin P0936 Paul, Rachel E. P0518 Pereira, Willian Eduardo Lino P1103 Panitz, Frank P0285 Paul, Robin P0988, W569 Peretti, Vincenzo W110 Pant, Shankar R. P0691 Paulitz, Timothy P0461 Perez-Elizalde, Sergio W389 Panter, Stephen P0138 Paulo, Joao P0001, W308, W316 Perez-Enciso, Miguel W156 Papa, Roberto P0753, W247 Pauluzzi, Germain W356 Perez-Enriquez, Ricardo P0259 Papadimitriou, Stavros P0578 Pauluzzi, Germain C W007 Perez-Rodriguez, Paulino W389 Pappas, Gerogios P0746 Pautler, Michael P0890 Pérez de León, Adalberto A. P0307 Paradis, Francois P0165 Paux, Etienne P0597, W031, W379, Perez Enciso, Miguel W533 Paraiso, Francine C18, W033 W473, W478 Perkin, Lindsey P0181 Parameswari, B. W815 Pavy, Nathalie W319 Perkins, Andy P0343 Parco, Arnold P0488 Pawelkowicz, Magdalena P0032, P0476 Perochon, Alexandre P0185, W463 Pareek, Chandra S. P0303 Pawlowski, Wojtek P0534 Peron, Gustavo de Carvalho P0931 Paria, Nandina P0322 Payne, Adrienne P0001, W316 Perrotte, J. W324 Parich, Alexandra P0130 Payne, Thomas P0594, P0596 Perry, Daniel P0666 Parida, Laxmi W357, W434 Pazhamala, Lekha T. P0209, P0211, Perry, Emily C05, P1144, W369 Paris, Margot W634, W797 P0788 Perry, Nigel P0972 Park, Boyeong P0421 Pazos-Navarro, Maria P0777 Perseguini, Juliana Morini Kupper Park, Carissa P1157 Peace, Cameron C13, P0888, P0894, Cardoso P0758 Park, Chan Ho W606 W335 Persia, Michael P0394, P0400, P0426 Park, Cheol Soon P0484 Pearce, Stephen W183 Persia, Michael E. P0121, P0395, Park, Eun-Jeong P1087 Pearman, Peter P. W797 P0399, P0401, W028 Park, Hyesun P0299 Pearson, Les P0986 Pertea, Geo P0577, W460, W474 Park, Hyun-Seung P1081 Pecchioni, Nicola P0674 Perumal, R P0563 Park, Hyunwoo W623 Pechtl, Isabell P1182 Perumal, Sampath P1081 Park, Jee Young P1081 Pedas, Pai P0668 Perumbakkam, Sudeep W644 Park, Jeong Mee P0828 Pedersen, Jeffrey P0016 Peternelli, Luiz A. P0105 Park, Ji-Min P0977 Pederson, Gary A. P1080, W747 Peters, Leila P. P0466 Park, Jong-In P0151 Peditto, David P0648 Peters, Sander A. P0042, P0871 Park, Jong-Won W812 Peever, Tobin P0457, W207 Petersen, Bent P0323, P0324 Park, Kwang-Wook P0349 Pegg, Timothy P0504 Petersen, Jessica L. P0321, P0330 Park, Kyong-Cheul P0825 Peitsch, Manuel C P0870 Petersen, Lillian P0323 Park, Minkyu W426 Peixoto, Jane de Oliveira P0176, P0418 Peterson, Brenda P0845 Park, Robert P0642, P0678 Peixoto Junior, Rafael Favero P0180 Peterson, Daniel G. P0462, P0465, Park, Seongjin P1110, P1137 Pelàez, Pablo W493 W280 Park, So-Yon P1099 Pellegrineschi, Alessandro P0550 Peterson, Mary P0923 Park, Soon Ju W615 Pellegrini, Matteo W577 Petit, Aurélie W324 Park, Suhyoung P0826, W708 Pellegrino, Gloria W179 Petit, Morgane L. P0379 Park, Sunjung W086 Pelletier, Gervais P0975 Petrie, James W087 Park, Yong-Jin P0484, P0510 Pelletier, Julie W845 Petrik, Deborah W094 Parliament, Kelly P0523 Pellino, Marco W189 Petroli, Cesar Daniel P0514 Parnpai, Rangsun W109 Peluso, Paul P0068, P0097 Petrovska, Beata P0191 Parra, Lorena W380 Pembleton, Luke P0107, W297 Petryszak, Robert W416 Parsons, Jim W050 Pena, Roberto J. P0594, P0599 Pfannebecker, Kai C. W616 Parsons, Joshua P1077 Pendarvis, Ken P0116, W646 Pfeifer, Matthias P0576, P0631, W030, Parthasarathy, Sai P0523 Peng, Jia-Shi P0152 W432 Parupalli, Swathi P0788 Peng, Junhua P0026, W563 Pfender, William F. W099 Pasam, Raj K. W881 Peng, Ting P0125 Pham, Anh P0730, W776 Pasan, Fernando P0834 Peng, Yanhui P0199, W851 Pham, Gina P0842 Paschoal, Alexandre W180 Peng, Ze P0740 Phan, Huyen TT P0652 Pasquariello, Marianna P0674 Penha, Helen Alves P0074 Phan, Lon P1109 Pastina, Maria Marta W002 Penin, Aleksey A. P1059 Phelan, Vanessa W678 Patel, Anand W507 Penmetsa, R. Varma W211, W394 Philippe, Florian P1111 Patel, Dhwani Apurva P0469 Penmetsa, R Varma P0780, W209 Philippe, Romain W473 Pater, Dianne P0798 Pepper, Alan E. W640 Phillippy, Adam W144, W440 Paterson, Andrew H. P0558, W280, Pera, Susana P0974 Phillippy, Adam M W089 W583, W748, W810, W865 Peraldi, Antoine P0027 Phillips, Jean W761 Pathak, Bhuvan P0546, W814, W833 Percy, Richard G. C14, P0953, P0961 Phillips, Jeremy L. P1124, P1126, W409 Patil, Sangitaq P1165 Père, Marie-Christine P0168 Phillips, Mark A W637 Patil, Suyash P0788 Perea de La Torre, Claudia Samantha Phillips, Wilberth W114, W115 Patocchi, Andrea P0900, P1104 C24 Phipps, Tenisha P1093, W625 Pattathil, Sivakumar W076 Pereira, Anirene G.T. P0301 Phuke, Rahul M. P0567

330 Phutane, Megha P0027 Porembski, Stefan P0998 Purcell, Larry C P0716 Piaskowski, Julia W162 Porter, Sandra P1147 Purchase, Candice W721 Piekarski, Alissa P0173 Portis, Ezio P1135 Purdy, Sarah W077 Pierce, Brian P1129 Portis, Flavio P1135 Puritz, Jonathan B. P1025, P1033 Pierce, Tessa P1159 Portnoy, David S. P1033 Puryear, Jeffrey P0987 Piercy, R.J. P0335, P0336 Portnoy, Vitaly W227 Puzey, Joshua W523 Pietrella, Marco W019, W180 Portoneto, Laercio P0306, W152 Qaadri, Kashef P1145, P1171 Pigna, Gaia P0014 Porto Neto, Laercio R. W155 Qi, Aiming W808 Piles, Miriam P0443 Portugal, Arllet W761 Qi, Aladaer P0319 Pillet, Jeremy P0214, W323, W359 Portwood, John C10 Qi, Shan W607 Pin, Didier P0304 Posada, Huver W178 Qian, Qian W700 Pin, Pierre P0663, W882 Posbergh, Christian J P0338 Qiao, Mengmeng P0125 Pinard-van der Laan, Marie-Hélène Postlethwait, John H. W525 Qiao, Xin P0905, P0910 P0423 Potier, A. W324 Qin, Xiang W139, W453, W861 Ping, Jieqing P0705, W755 Potier, Bernard W714 Qiu, Dan P0702 Pinhasi, Ron P0475 Pouch, Milan P0833 Qiu, Jin-Long W517 Pinheiro, Kenny C P0459 Pound, Michael P. P0057, W709 Qiu, Lijuan P0705, W755 Pinheiro Martinelli, Adriana P0966 Pourkheirandish, Mohammad P0660, Qiu, Mengjie P0319 Pinnow, David P1080 P0671, W880 Qiu, Zhongwei P0319 Pinosio, Sara W186 Poux, Celine P0796 Qu, Hao P0406 Pinto, Luciana R. P0547 Powell, Charles A. P0434 Qu, Lujiang P0417 Pinzon-Latorre, David W290 Powell, Ellis J. W832 Quandt, Dietmar W618 Pipia, Ia Z. P0879 Powell, Wayne W395, W430 Quero-Garcia, José W334 Pirani, Ali P0265, P1165 Powers, Carol P0624 Quesneville, Hadi C17, P0654, W421, Pires, J. Chris W632 Powers, Stephen W808 W478, W504, W795 Pires, Jose Luis P0997, W120 Pozniak, Curtis P0575, P0588, P0620 Quintanilla, Raquel P0356, P0360 Pirintsos, Stergios Arg. P0154 Pozniak, Curtis J P0580, P0593, P0617, Quintero, Juan Camilo C24 Pirona, Raul W326 W035 Quinton-Tulloch, Mark P0479, W268 Pissaroglo, Mellissa P0752, W221 Prakapenka, Dzianis P1176 Qureshi, Naeela P0641 Pissetti, Caroline P0358 Prakash, Jai P0933 Ra, Won-Hee P0484, P0510 Pixley, Kevin P0594 Prasanna, Boddupalli M. P0532 Raanin, Keerthivasan Chandradoss Plader, Wojciech P0032, P0476 Prat, Elisa P0070, P0796 P1046, P1047, P1072, W806 Plastow, Graham S P0345, P0374, W828 Prather, Randall S W830 Rabanus-Wallace, Mark T P0475 Platt, Roy N. W279 Prazzoli, MariaLucia P0587 Rabiei, Babak P0502 Platts, Adrian W894 Preece, Justin W415 Racelis, Alexis W640 Platz, Gregory J P0678 Premaraj, Shyamaly P0374 Radisek, Sebastjan P0463, P1067 Pliego, Clara W607 Presting, Gernot W582 Radwan, Osman W561, W756 Plieske, Joerg P0047 Price, Jonathan P0479, W268 Raffin, Annie P0990 Plomion, Christophe P0989, P0990, Prieto, Pilar P0667 Raghavan, Maanasa P0324 P0992, W305, W593, W795 Prieto Barja, Pablo P0746, P0750 Ragu, Mohana W796 Plotto, Anne P0215 Prince, Silvas J. P0702 Ragupathy, Raja P1039, W291 Plowiec, Arkadiusz P0428 Prinsen, Raphaelle T.M.M. P0287, Rahimi, Mehdi P0502 Poblete, Gisselle P0912 P0288 Rahimi Ashtiani, Samira P0138 Poelchau, Monica P0432, P1118, W411 Project Research Team, the Bovine Rahman, Md. Sazzadur P0508 Poets, Ana M. P0669 Respiratory Disease Complex Rahman, Mukhlesur P0108 Poinar, Hendrik W238 Coordinated Agricultural P0312 Rai, Aswathy N P0167 Pokorn, Tine P1067 Protasio Pereira, Luiz-Filipe W180 Raina, Aparna S. P1053 Poland, Jesse P0592, P0599, P0647, Pruitt, Kim D. C04, C21, P0791, P1105, Rainey, Katy Martin P0689, P1180 P1030, W362, W538, W639, W713 P1115, P1120, P1142, W106, W273, Raithel, Seth P0134 Polevikov, Antonina P0447 W515 Rajao, Daniela W832 Polkinghorne, Adam W635 Pryer, Kathleen M. P1082, P1085 Rajaraman, Sitaram P0971 Pollastri, Susanna W308 Przybecki, Zbigniew P0032, P0476 Rajewski, John P0556 Polle, Andrea W308 Puchalski, Brent P0467 Rajput, Bhanu P1115, W273 Polley, Andreas P0047 Puchalski, Byron P0467 Rajwanshi, Ravi P0720 Pollott, Geoff E P0338 Puchta, Holger W599 Ralph, John P0027, W094 Polowick, Patricia L. P0581 Puiu, Daniela P0577, P0988, W332, Ralph, Paula P1078 Pommier, Cyril C15, C17, P0654, P1128, W460, W474, W568, W569 Ralston, Sarah P0342 W421, W504 Pujar, Anuradha P1123, W487, W613 Ramakrishnan, Srividya P1138 Ponce De Leon, F. Abel W150 Pujar, Shashikant P1115, W273 Ramalingam, Abirami P0209, W004 Poncet, Valerie W180 Puli, Chandra Obul Reddy P0568, P1079 Raman, Harsh W604 Ponniah, Sathish Kumar P1073 Pumphrey, Michael P0629, P0637, W393 Ramaraj, Thiru P0765, W712 Pons, Agueda W442 Punna, Ramu P0562, P0566, P0782, Ramaraj, Thiruvarangan P0533, P0767, Pont, Caroline P0584 W123 P1044 Porch, Timothy P0745, W169 Purcell, Catherine P0232, P0236, W051 Ramayo-Caldas, Yuliaxis P0363

331 Ramesh, Palakurthi P0568 Reguera, María W566 Ridenour, John B. P0456 Ramey, Holly R. P0280 Reich, David W238 Riedl, Ken M. P0857 Ramirez, Oscar W156 Reichert, Gert-Jan P1084 Rieseberg, Loren H. P0950, P0951, Ramirez-Gonzalez, Ricardo H. P0602, Reid, Robert W538 W197, W317, W573, W633, W849, W465 Reidel, Edwin W609 W851, W893 Ramos, John P0434 Reis, Matheus P0426 Rife, Trevor W. P0592 Ramos, Patricio P0993 Reisch, Bruce P0873, P0882, P0889, Riggio, Valentina P0293 Ramos, Rommel T. J. P0459 W012, W419 Riggs, Penny W137 Ramsay, Larissa W209 Reis Júnior, Osvaldo P0213 Rigoreau, Michel W180, W181 Ramsay, Trevor W306 Reitsma, Kathleen P1074 Rigotti, Serena W122 Ramsey, Sheila P0327 Rellán Álvarez, Rubén P1016 Rincent, Renaud P1178 Ramstein, Guillaume P. W429, W565, Ren, Longhui P0693, P0737, W866 Rincon, Gonzalo P0306 W567 Ren, Yi W225 Rinehart, Timothy A. P0922, W547 Ramunno, Luigi W108, W109 Ren, Zhuqing P0364 Rios, Juan Carlos P0912 Randhawa, Harpinder P0467 Renaut, Sebastien W197 Rios-Acosta, Lorena P0517, P0538 Randhawa, Mandeep P0639 Rendón-Anaya, Martha P0746, P0750 Rischkowsky, Barbara W026 Raney, Nancy E. W831 Rengel, David W849 Risinger, Jan P0040 Ranjan, Priya C29, P1138 Renken, Lindsey P0040 Rival, Alain W552 Rank, David P0068, P0097 Renny-Byfield, Simon W213 Rivas, Paulina P0062 Rao, Idupulapati P0752, W221 Rensing, Stefan A. P1089, W527 Rivero, Luz P0793 Rao, Rosa P0853 Resende Jr., Marcio F P0095, P0985 Rizzolatti, Carine P0663, W882 Raoul, Jérôme P0377 Resztak, Justyna A P0979 Robert-Granié, Christèle P0383, W444 Rapicavoli, Nicole P0097 Reuveni, Moshe W757 Roberts, Philip A. P0204, P0784, P0785, Rappel, Wouter-Jan P0806 Reveche, Maria Ymber V. P0489 P0786, W489, W766, W767 Rasmussen, Søren Kjærsgaard P0668 Reverter, Antonio P0306, P0430, W152, Robinson, Julie W834 Rathjen, John P. W518 W155 Robledo, Francisco P0912, W334 Rathore, Abhishek P0208, P0566, Revilleza, Jastin E. W777 Robson, Paul R. H. P0028 P0742, P0783, W009, W212, W763, Rexroad, III, Caird E. P0244, P0247, Rochfort, Simone P0138 W778 W055 Rodde, Nathalie P0070, P0663, W882 Rathore, Dheeraj P1090 Rey, Elodie W172 Röder, Marion S. P0606 Rätsch, Gunnar P0145 Rey, Jessica D. P0505 Rodgers-Melnick, Eli P0528, W008, Rattanakon, Supakan W423 Rey, M Dolores R. P0667 W720 Rattunde, Fred W002 Reyes, Jose L W493 Rodrigo, M.J. P0667 Rau, Domenico P0753 Reyes Chin-Wo, Sebastian P0460, Rodrigues, Fabiana Aparecida P0203 Raudsepp, Terje P0315, P0322, P0333 P1011, P1013, P1062, W196, W380, Rodrigues, Josiane Isabela da Silva Rauh, Brad P0552 W436 P0101 Raveendran, Muthuswamy P0073, W360 Reynaldo, Yadira W394 Rodrigues, Marcela Iara P0996 Rawat, Nidhi P0613, P0924, P0927 Reynolds, James O. P0381 Rodrigues Guimaraes, Joao F. P0095, Ray, David A. W279 Reynolds, Matthew P0594, P0596, W774 P0985 Ray, Jeffery D. P0716 Reynoso, Mauricio A. W356 Rodriguez, Juan C. W474 Razaque, Samsad P0508 Rhee, Seung Yon P0806 Rodriguez, Monica P0753 Reagan, Russell W332 Rhee, Sun-Ju P0938 Rodriguez-Alonso, Gustavo P0034, Reagon, Michael W097 Rhoads, Douglas D. P0404, P0407, P0222 Real, Daniel P0777 P0412, P0414, P0415, W642, W648, Rodriguez-Salus, Melinda P0140 Rebl, Alexander P0234 W654, W658, W664, W670, W672, Rodriguez Lopez, Carlos M P0233, Rebolledo, Boris P0062 W673 P0877, W041 Records, Angela W172, W284 Rhoads, Robert P. W025 Roe, Bruce A. P0965 Reddi, K V N Rathnakar P0568 Riaz, Summaira P0873, W418 Roest Crollius, Hugues C06, P1006 Reddy, Arjula R P0568, P0954, P1079 Ribaut, Jean-Marcel W761 Roffler, Stefan W868 Reddy, CVC Mohan P0568 Ribeca, Paolo P0390 Rogel-Gaillard, Claire P0363, P0373, Reddy, Joseph S P0167 Ribeiro-Alves, Marcelo P0966 P0443 Reddy, Lachagari V. B. P0568 Ribeiro Reis, Rafaela P0203 Rogers, Allison P0408, P0429 Reddy, Sanjay W847 Ribolla, Paulo E. Martins P0177, P0439 Rogers, Jane W172 Reddy, Umesh K. W228, W229 Ricaurte, Jaumer P0752, W221 Rogers, Jeffrey P0073, W139, W360, Redoña, Edilberto D. P0507 Ricca, Mariana W618 W453, W861 Reecy, James M. P0225, P0269, P0297, Ricci, Andrea P0575 Rognon, Gabriel P0392 P1113, P1157, P1188, W025, W054, Richards, Christopher M. W391 Rohland, Nadin W238 W106, W108, W145, W147, W158, Richards, Jonathan P0474, P0675, Rohrer, Gary A. P0370, W827 W278, W663 P0679, P0978 Rojas, J. Alejandro W286 Reed, Kent M. P0405, W656 Richards, Stephen W068, W139, W453, Rokhsar, Daniel S. P1124, P1126, W029, Rees, Jasper P0292, P1045 W861 W080, W326, W409, W713, W780, Reeves, Gregory P. P1088 Richaud, Frédérique W552 W864 Regiani, Thais P0112, W837 Richter, Jacqueline C10 Roldan-Ruiz, Isabel W431, W564 Regitano, Luciana C.A. P0290, W252 Riddle, Suzette P0310 Rolshausen, Philippe E. W418

332 Roman-Paoli, Elvin P0752, W221 Rüger, Simon W308 Salas-Leiva, Dayana E. W558 Romaniuc, Alan Roberto P1170 Ruhsam, Markus P1086 Salcedo, Adriana W894 Rombauts, Stephane W019, W202 Ruiz, Didac Santesmasses W201 Saleeba, Jennifer A. P0807 Romero-Severson, Jeanne P0969, Ruiz, Felipe de Jesús P0282, P0294 Salem, Abdelazem P0632 W312, W878 Ruiz, Manuel P1111, W448 Salem, Mohamed P0248 Ron, Mily W356 Ruperao, Pradeep P0778, P0782 Sallam, Ahmad P0665 Ronald, Pamela P1138 Rupp, Oliver P0141 Sallam, Ahmed M. A. P0311 Rong, YIng P0058 Rupp, Rachel P0379, W137 Salmon, Armel P1056, W015 Rooney, William W174 Russ, Carsten W090 Salojärvi, Jarkko T P0971, W302 Rooney, William L. P0559 Russo, Maria Anna P0585 Salse, Jerome P0584, W795 Roorkiwal, Manish P0781, P0782, Russo, Vincenzo P0355 Salvi, Silvio P0575, P0604, P0657, P0783, W009, W763, W778 Rutkoski, Jessica P0647 W508, W705 Roozeboom, Kraig L. W747 Ruttink, Tom P0195, W431, W564 Salzberg, Steven L P0577, P0988, Rosa, Guilherme J. M. P0105 Ryder, Oliver P1000 W332, W460, W474, W568, W569 Rosa, João Ricardo Bachega Feijó Rydzak, Patrick W065 Samans, Birgit P0818, P0819 P0758 Rynge, Mats P0696 Samarkoon, Thilani P0134 Rosa, Kamila O. P0290 Ryona, Imelda P0873 Sambanthamurthi, Ravigadevi W556 Rosado, Tatiana Barbosa P0007 Ryu, Ju Hyun P0132 SameerKumar, CV P0788, P0789 Rosas, Juan Carlos W169 Ryu, Sangryeol P0450 Saminathan, Thangasamy W228 Rose, Michael R. W637 Sa, Maria E.L. P0725 Samineni, Srinivasan W778 Rosen, Benjamin D. C23, P0790, P0792, Sa, Suellen P0341 Sammons, R Douglas W851 W059, W410, W876 Saad El-din Ahmed, Sahar W109 Samore, Antonia B. P0287 Roskens, A. Bruce P0682, W536 Sabates, Sofia P1030 Samorè, Antonia Bianca P0344, P0355, Ross, Jason W. P0348, W025 Sabot, François W552 W823 Ross, Pablo J. W535 Saburido Álvarez, Soledad P0746, Sampson, Juliana P1109 Ross-Ibarra, Jeffrey P0529, P0531 P0750 Sana, Maria W156 Rossignol, Pascale P0930 Sacco, Randy E. P0119 Sanabria, Yamid P0512 Rossini, Laura P0916, W326, W888 Saccomani, Massimo W804 Sanchez, Armand P0376, W442, W824 Rossoni, Attilio P0288 Sacks, Erik J. P0026, W563 Sanchez, Federico P0746, W493 Rosyara, Umesh R. P0841 Sacks, Gavin P0873, W419 Sanchez, Geisha Shaina Lyn B. P0489 Rothan, Christophe W324 Sade, Nir W566 Sanchez, Juan W603 Rothfels, Carl J. P1082, P1085, P1086 Sadia, Bushra P0946 Sanchez, Laura W678 Rothschild, Max F. P0121, P0348, Sadowski, Jan P0188 Sanchez, Leopoldo P0990, W554 P0394, P0395, P0399, P0400, P0401, Saelao, Perot P0397, P0425 Sanchez, Vanessa W558 P0426, W026, W028, W137 Safar, Jan P0191, P0591 Sanchez-Moran, Eugenio W687 Rotter, Bjorn P0733, P0941 Safranski, Timothy J. W025 Sánchez-Sevilla, José F. P0919, P0920 Rottmann, Will P0986 Sage, Rowan F. P0179 Sanchez Perez, Gabino F. P0871, W019 Rouard, Mathieu P0109, P0944, W070, Sage, Tammy L. P0179 San Cristobal, Magali P0168 W074, W679 Sager Bittara, Lauren P. P0675 Sandal, Niels P0692, W506 Roulund, Niels P1050, W433 Saha, Gopesh P0763 Sanders, William S. P0462, P0465 Roumet, P. W504 Saha, Malay C. P0024, P0137, P1048, Sanderson, Lacey-Anne W408, W872, Rounsley, Steve P1071 W078 W873 Rouse, Franchesca P0001, W316 Saha, Rajib P0535, W262 Sandhu, Hardev S. P0009, W811 Rouse, Matthew P0644 Saha, Surya W726 Sandionigi, Anna P1037 Rouse, Matthew N. W365 Sahab, Sareena P0138 Sang, Dajun W700 Rousseau-Gueutin, Mathieu W015 Sahrawat, Kanwar P0567 Sankoff, David P1019, W180 Roux, Jolanda P0458 Saied, Clare W537 Sansaloni, Carolina Paola P0514, P0594 Roux, Nicolas P0109, P0944, W070 Saintilan, Romain P0304, P0379 Sanseverino, Walter P0746 Rowe, Suzanne W390 Saint Pierre, Carolina P0594, P0596 Santalla, Marta P0746 Rowland, Diane P0740 Saito, Kazuki W734 Santana, Damaris W169 Rowland, Gordon W294 Saito, Misa P1125 Santhosh, Sam P0954 Rowland, Raymond R. R. P0225, W828 Sajjad, Mohammad P0545 Santoro, Nicholas P0027, W078, W094 Royaert, Stefan E. W116, W118 Sakai, Hiroaki P0496, P0749 Santos, Anselmo Azevedo P0074 Roy Choudhury, Dipa P1146 Sakakibara, Hitoshi W734 Santos, Jansen Rodrigo Pereira P0204, Royer, Frédéric P1162 Sakayama, Hidetoshi P1089, W527 P0784, P0785, W767 Ru, Sushan C13, P0888, P0894 Sakazono, Satomi P0799, P0800, P0801 Santus, Enrico P0285 Ruan, Yuefeng W035 Sakhale, Sandeep A P0562 Sarah, Gautier P1111 Ruas, Max P0944 Sakiroglu, Muhammet P1036 Saranga, Yehoshua P0611, P0636, Rubin, Carl-Johan P0324 Sakuma, Mari P0660 W364 Rubin, Edward M. P0324 Sakuma, Tetsushi W734 Sarazin, Alexis P0796 Rudd, Jackie C P0625, P0634 Sakurai, Tetsuya P0154, P0685 Sardos, Julie P0109, P0944 Rueda, Carlos Gustavo Martínez P0594 Sakuray, Leonardo Murai P0213 Sargolzaei, Mehdi P0283, P0298 Ruess, Holly P1074 Salamin, Nicolas W797 Sasaki, Harumi P0706 Ruff, Travis P0030 Salas, Alexis P0062 Sasaki, Takuji P0485

333 Sasaki, Yohei P1122, P1125, P1161 Schnabel, Robert D. P0275, P0280, Seetharam, Arun P0232 Saski, Christopher A. P0969, W282, P0290, P0302, P0312, P0388, P0837, Seetharam, Arun S. P0520, W412 W312 W111, W141, W147, W154, W252, Seeve, Candace P0984 Sassa, Hidenori P1063 W636 Seferian, Rhianna P0341 Sating, Richard P1165 Schnabel, Sabine W308 Segev, Ori P0447 Sato, Akihiko P0878 Schnable, James C W497 Segovia, Vanesa P0602, W465 Sato, Mayu P0799 Schnable, Patrick S. P0183, P0522, Seguin-Orlando, Andaine P0323, P0324 Satou, Kazuhito P0749 W382, W495, W900 Sehabiague, Pierre P0532 Satyawan, Dani P0747, P0762 Schneeberger, Korbinian W428 Sehgal, Deepmala W774 Saucedo-Barron, Cesar J. P0259 Schneider, Blair Kathleen P0426 Sehgal, Sunish K. W713 Saunders, Diane W519 Schneider, Jim F. P0370, W827 Seibert, Jacob T. P0348, W025 Saunders, Gary C01, P1106, W370 Schneider, Kevin W582 Seidel, Michael W559 Sauvage, Christopher C15, P0854, Schneider, Maria P. C. P0459 Sekhar, Akila Chandra P0568, P1079 P1128 Schneider, Valerie C21, P0791, P1120 Seki, Hikaru W734 Sawada, Yuji P0685 Schnell, Raymond J. W116, W118, W119 Seki, Kousuke P1063 Sawai, Satoru W734 Schnurbusch, Thorsten P0606, P0670, Sela, Hanan P1027 Sawers, Ruairidh P0594 W881 Selosse, Marc-André P1059 Sawkins, Mark W503, W761, W762 Schoel, Bernd P0045, P0061 Selsby, Joshua T. W025 Saxena, Rachit K P0788, P0789, W212 Scholten, Olga E. P1061 Selvanayagam, Sivasubramani P0562, Sayama, Takashi P0706, P0712, P0713 Scholz, Uwe P1155, W713, W889 P0566 Sayre, Brian P1188, W026, W137, Schook, Lawrence B. P0373 Semagn, Kassa P0532 W144, W440 Schrader, Lukas W524 Semel, Yaniv W505, W737 Sazuka, Takashi P1166 Schranz, M. Eric P0827 Sempéré, Guilhem P1111, W448 Sbalzarini, Marco P0578 Schranz, M Eric P0179, W627 Sen, Taner Z. C10 Scaglione, Davide P0001, W179, W316 Schreiber, Lukas P0912 Senalik, Douglas P1074, P1077, W222, Scalabrin, Simone P0001, P0575, Schreier, Spencer P0718, W626 W250 P0587, W179, W308, W316, W326 Schroeder, Julian I. P0798, P0806 Senturk Akfirat, Funda P1036 Scanlon, Michael P1010, W499 Schroeder, Mercedes P0140 Seo, Dongwon P0353 Scarano, Daria P0853 Schroeder, Steven G. P0277, W108, Seo, Seongwon P0299 Schaefer, Rob P0318 W141, W144, W155, W440 Seon, Dong W212 Schaefer, Robert W277 Schrooten, Chris P1172 Septiningsih, Endang M. P0509 Schaeffer, Mary C10 Schroyen, Martine P0225 Seraj, Zeba Islam P0508 Schaeffer, Scott P0899 Schubert, Mikkel P0323, P0324 Serapiglia, Michelle W315 Schaffer, Ari W227 Schubert, Veit W589 Serba, Desalegn P0137, W078 Schaffert, Robert W002 Schuhmacher, Rainer P0130 Serbin, Shawn P. P0518 Schafleitner, Roland P0941 Schukken, Ynte H. P0079 Sergio Cortez, Gamboa P0594 Schagat, Trista P0066, P0096 Schulman, Alan H. W871, W886 Sergio Ivan, Román Ponce P0282, Schardl, Christopher P0193 Schulman, Nina F P0284 P0294 Schatz, Michael P0097, P1138, W088, Schultner, Eva W524 Serizawa, Hiroaki P1063 W615, W819, W859 Schultz, Carolyn J. P1184 Serra, Octavio P0915 Schelkunov, Mikhail I. P1059 Schulz-Streeck, Torben P0553 Serradilla, Juan Manuel W442 Schenkel, Flavio P0283, P0298 Schumacher, Cassie A. P0076 Serrano, Jonathan P0730 Schiavini, Fausta P0285, P0287, P0288 Schuster, Stephan P0969 Servin, Bertrand P0270, P0423 Schiavo, Giuseppina P0344, P0355, Schwab, Wilfried P0918 Sese, Jun P0803 W823 Schwacke, Rainer P1134 Sessa, Emily P1082, P1086 Schijlen, Elio W019 Schwartz, David C. W139 Session, Adam W713 Schinor, Evandro Henrique P0929, W161 Schwartz, Steven P0851, P0857 Settles, A. Mark W899 Schlake, Hannah P0569 Schwarz, Erich M. P0454 Settles, Matthew P0176, P0418 Schlarbaum, Scott P0969, W312, W878 Schwarz, Flavio P0117, W437 Severin, Andrew J. P0232, P0236, Schlauch, Karen A. P0155, P1066, W347 Schwarzacher, Trude W071, W591 P0520 Schlegel, Kim W122 Schweiger, Wolfgang P0130 Sevindik, Basar P1031 Schluepmann, Henriette P1084, P1085 Schweitzer, Peter P0873, W419 Seymour, Roger P0154 Schlueter, Jessica P0699, W538 Schwinn, Kathy P0972 Sforça, Danilo A. W821 Schmickl, Roswitha P0065 Scott, Alison Dawn P0983 Shabir, Nadeen P0371 Schmidt, Carl J. P0121, P0394, P0400, Scotti, Emilio P0344, P0355, W823 Shack, Leslie A P0167 P0401, P0408, P0426, P0429, P1116, Seabury, Christopher M. P0381, W140 Shaff, Jon W002 P1150, W028, W279, W660, W770 Searle, Iain P0877 Shah, Trushar P0566 Schmidt, Eva P1182 Seaver, Samuel M. D. P0163, P1066, Shaker, Patricia D.C. P0466 Schmidt, Martha W115 P1138, W347, W784, W836 Shakiba, Ehsan P0490, W010 Schmidt, Thomas W071 Sebastian, Jose P1016 Shamimuzzaman, Md P0207 Schmidt, Ty B P0167 Sebela, Marek P0191 Shan, Yunfeng P1043 Schmitz, Robert W187 Sedbrook, John C. P0027, W083, W094 Shandu, Siphiwokuhle P0537 Schmutz, Jeremy P0003, P0570, P0699, Seefried, Franz R. P0281 Shang, Yongjin P0138 W326, W529, W713, W780, W784 Seem, Bob P0873 Shanker, Vijay P0429

334 Shanklin, John P0546, W084, W814, Shimizu, Kentaro K. P0800, P0803, Simon, Reinhard P1040 W833 W618 Simons, Margaret P0535, W262 Shanmugasundram, Achchuthan P1024 Shimizu, Takehiko P0706 Simsek, Ozhan P1031, P1101 Shannon, Grover P0702, W706 Shimizu, Tokurou C30, P1131, W163 Simsek, Senay P0615 Shanshan, Yang W682 Shimizu, Yukari P1063 Singh, A. K. P0933 Shao, David P1109 Shimizu-Inatsugi, Rie P0803 Singh, Akshay P0933 Shao, Jonathan W115 Shimpa, Lindsey P0623 Singh, Davinder P0642, P0678 Shao, MIN P0091 Shin, Chanseok P0127, P0812 Singh, Dharmerndra P0622 Shapiro, Beth G002, P0324, W239 Shin, Diana P0793 Singh, Gagandeep P1053 Sharaf, Abdoallah W824 Shin, Donghyun P0291 Singh, Jaswinder P0015, P0662 Sharbel, Tim W189, W193 Shin, Hosub P0132, P0196 Singh, Jugpreet C11, P0690, P0697, Sharbel, Timothy F. W194 Shin, Hyunsuk P0103, P0904, P0906, P0735, P0737, W223 Sharma, Govind C. P0965 P0907 Singh, Kanwardeep P0610 Sharma, Hari P0562 Shin, Sang-yoon P0127 Singh, Karam W491 Sharma, Keshav P0691 Shinozaki, Kazuo P0154, P0685 Singh, Kashmir P0832 Sharma, Mamta P0788 Shinozuka, Hiroshi P0107, W297 Singh, Muneendra W778 Sharma, Nimisha P0933 Shinozuka, Maiko P0107 Singh, Murari P0621 Sharma, Prachi P0622 Shirasawa, Kenta W100 Singh, N. K. P0933 Sharma, Rajan W436 Shirsekar, Gautam W606 Singh, Namrata P0490 Sharma, Rajiv W881 Shishkova, Svetlana P0034, P0222 Singh, Narendra P P0783, W009 Sharma, Rishu W166 Shiu, Shin-Han W522 Singh, Pawan P0594, P0596 Sharma, Sapna P0130, W432 Shockey, Jay W086, W245 Singh, Pradeep P0488 Sharma, Shailendra W563 Shomura, Ayahiko P0496 Singh, Rajinder W556 Sharma, Shiveta W563 Shotkoski, Frank P1102, W073 Singh, Ram P0340 Sharma, T. R. P0933 Showmaker, Kurt P0462, P0465 Singh, Ratnesh W299 Sharma*, Ram K. P1053 Shtratnikova, Viktoriya Ju. P1059 Singh, Ravi P. P0599, P0647, W461 Sharma Khatiwada, Sandeep P0456 Shu, Dingming P0406 Singh, S. K. P0933 Sharon, Itai W787 Shu, Shengqiang P1124, W326, W529, Singh, Shardendu K P0716 Sharpe, Andrew G. P0580, P0581, W784 Singh, Sukhwinder P0594, P0596, W461 P1039, W035, W209, W291, W476, Shuck, Kathy P0339 Singh, Surinder P0662, W087 W809 Shumaker, Ketia P0969, W231, W312, Singh, Vikas K P0788, P0789 Sharpe, Richard P0858 W878 Sinha, Neelima R. W356 Sharpe, Ted W090 Sibout, Richard W094 Sinha, Pallavi P0788 Shasha, Dennis W058 Sicheritz-Ponten, Thomas P0323, P0324 Sinha, Sangram W718 Shasidhar, Yaduru P0739 Siebert, Lydia J. P0309 Sirault, Xavier P0038 Shatters Jr., Robert G. P0434 Siemens, David P0834 Sisco, P. P0995 Shaw, Jonathan W529, W784 Siemering, Kirby P0777 Sisneros, Nick P0068 Shearer, Lindsay P0849, W689 Sierro, Nicolas P0870 Siwek, Maria P0428 Sheikh, Imran P0622 Sigel, Erin M. P1082, P1085 Skidmore, Edwin C22 Sheikh, Mehboob B P0883 Signer-Hasler, Heidi P0281 Skoglund, Pontus W238 Shekhtman, Eugene P1109 Sikora, Marcin P0303 Skoneczka, Jeffrey A P0727 Shelton, Jennifer P0134 Silva, Artur Luiz Costa P0048, P0459 Skot, Kirsten P. W430 Shem Tov, Doron W227 Silva, Claudio B. C. W821 Skot, Leif W430 Shen, Botong P0273 Silva, Fabyano F. P0366, P0368 Skowron, Waldemar P0864 Shen, Danyu W115 Silva, Herman P0912, W321, W326, Slattery, Rebecca A. P0010, W814 Shen, Jie P0435 W327, W330, W334 Slavov, Gancho T. P0028, P0274 Sheng, Zheya P0406 Silva, Joaquim Manoel da P0289, P1021, Slawinska, Anna P0428 Shepherd, Daisy W020 P1170 Sloan, Daniel P1052 Sher, Andrew P0980 Silva, Mariana de Souza e W837 Slotte, Tanja W894 Sher, Andrew W. P0981, W263 Silva, Mariana Souza P0112 Slovin, Janet P. P0921 Sherman, Jamie P0613, W032 Silva-Junior, Orzenil Bonfim P0743, Slunsky, Renate W641 Sherwood, David A. W190 P0945 Small, Ian P0071, W542 Shi, Haiying P0060 Silveira, Sylvia P0966 Smallfield, Bruce P0972 Shi, Lina P0125 Silverstein, Kevin AT P0736, P0765, Smart, Lawrence P0003, W008, W315, Shi, Qinghua W366 P0768, P0771 W720 Shi, Shanshan P1071 Sim, Sheina P0431 Smeda, John R. P0859 Shi, Yongsheng W791 Simkova, Hana P0587, P0589, P0590, Smeekens, Sjef P1084 Shi, Zi W117 P0591, W014, W471, W886 Smets, Pia W317 Shigematsu, Miku P1176 Simmonds, James P0642 Smith, Carolyn P0069 Shih, Ming-der P0201 Simmons, Alvin M. P0440 Smith, Christopher D. W524 Shikata, Masahito P0850 Simmons, Rachel E. P0249 Smith, Douglas P0373 Shim, Sang-In P0538 Simon, Phil P1074 Smith, Hazel Katherine P0001, W308, Shim, Sangrea P0709 Simon, Philipp W. P1076, P1077, W222, W316 Shimelis, Hussein P0649 W250 Smith, James R. P0716

335 Smith, Jeramiah J. P0118, P0120, Souza, Emanuel W707 Steffenson, Brian J. P0190, P0672, P0122, P0124, P0446, W743 Souza, Glaucia M. P0011, P0549, W817, P0677, W887 Smith, Jonathon E. P0456 W818, W819 Steibel, Juan P. P0225, W831 Smith, Kevin P. P0661, P0665, P0672, Souza, Layanne B. P0551 Steige, Kim W894 P1004 Souza, Marcela M. P0290 Stein, Joshua P1119, W413 Smith, Morgan C. P0159, P0161 Souza, Silvana Creste P0180 Stein, Nils P0657, P0658, P0670, W363, Smith, Scott W538 Souza, Sylvia M. W002 W508, W705, W713, W886, W889 Smith, Steven W W556 Souza-Neto, Reinaldo Rodrigues de Steinbach, Delphine C15, C17, P0654, Smith, Timothy P.L. W139, W144, W288, P1103 P1128, W421, W478, W504, W795 W440, W789, W862 Souza Junior, Manoel Teixeira P0008, Steinfartz, Sebastian P0447 Smith, Todd P1147 W553 Stella, Alessandra W109, W137, W441 Smith, Wayne P0964, W016, W685, Soysal, Ihsan W109 Stelly, David P0958, W218 W848 Spalding, Edgar W853 Stelly, David M. P0956, P0965 Smith-White, Brian C21, P0791, P1120 Spangenberg, German P0138, W297 Stenderup, Jesper P0324 Smoczynski, Rafal P0303 Spangler, Matt L. W027 Stenmark, Kurt P0310 Smolinski, Tomasz P0759 Spannagl, Manuel C17, P0654, W432, Stephen, Stuart W681 Sneller, Clay P0598 W559 Stephens, Claire S. P0409 Snowdon, Rod P0553, P0818, P0819 Spanu, Pietro W607 Sternberg, Paul W. P0454, P1020, W396 Sobczynski, Helen A. P0405 Sparks, Erin W704 Stevanato, Piergiorgio W804 Socias i Company, Rafael P0914, P0917 Specht, James E. P0705, P0708, W755 Stevens, Carlynn P0327 Soderlund, Carol W460 Speidel, Scott E. P0169, P0310, W142 Stevens, Kristian P0988, W332, W568, Soekamto, Michael P0413 Speiser, Lyndi E P0378 W569 Soh, Hye Yeon P0132 Spittle Kim, Kristi P0068, P0519 Stevens, Rick P1138 Soifer, Ilya W184 Spooner, David P1074 Stevenson, Dennis Wm. P1086, W842 Sollars, Elizabeth W313 Spotted Gar Genome Consortium W525 Stewart, Fiona J P0050 Solovieva, Elena P1148 Spring, Otmar P0460, W436 Stewart Jr., C. Neal P0014, P0020, Soltani, Ali P0760 Springer, Nathan M. P0540, P0843, P0021, P0199, P1091, P1097, W851 Soltanloo, Hassan P0115 W496 Still, David W. P1060, W470 Soltis, Douglas E. P1082 Sprink, Thorben W686 Stinchcombe, John W894 Soltis, Pamela S. P1082 Sprycha, Yves P0998 Stirnweis, Daniel P0648, W243 Somers, Daryl J. P0890, P0913, W328 Squance, Michael P0028 Stock, Patricia P1020 Sonah, Humira W706 Sreedhar, Arjun P1046, P1047, P1072, Stoces, Stepan P0195 Sonder, Kai P0514 W806 Stoddard, Thomas W600 Sone, Mikako P0800, P0801 Sreekanta, Suma P0717 Stoffel, Kevin P0956 Song, Bo P1085 Sribalusu, Venkatanaga C10 Stökl, Johannes W524 Song, Jawon P1181, W267 Sridhar, Varshini P0886 Stölting, Kai N. W634, W797 Song, Jian P0548, W811 Srinivasan, Subhashini P1046, P1047, Stones-Havas, Steven P1145, P1171 Song, Jiuzhou P0277, P0416, P0417, P1072, W806 Stoop, Marianne P0286 W024, W141, W643, W665 Sripathi, Venkateswara R. P0965 Storey, Roy W331 Song, Li P0765, P1164 Srivastava, Manish P0933 Stothard, Paul W828 Song, Liang W358 Srivastava, Manoj W190 Stougaard, Jens P0692, W506 Song, Lin P0242 Srivastava, Stuti W058 Straathof, Christina T. P0165 Song, Qijian P0101, P0699, P0708, Srour, Ali P0726 Straub, Shannon P0065, P0775 P0730 St. Clair, Savanah P0784 Strausbaugh, Carl W807 Song, Qingxin P0959, W216 Stabellini, Natalia Spagnol P0550 Strauss, Günter P0323 Song, Yan C25, P1149 Stacey, Gary P0694 Strauss, Steven W594 Song, Zhihong P0134 Stadnik, Agnieszka P0238, W037 Streich, Jared C. P1023 Songkumarn, Pattavipha W606 Stagegaard, Julia P0323 Strem, Mary W115 Sonstegard, Tad S. P0271, P0277, Staiger, Elizabeth A. P0329, P0340 Stricker, Christian P0281 P0279, P0301, W106, W108, W137, Stajner, Natasa P0463, P1067 Strickler, Susan R. P0839, W180, W725 W141, W143, W144, W150, W155, Stam, Maike W581 Strillacci, Maria G. P0287, P0288 W387, W440 St Amand, Paul P1030, W639 Strnadova, Veronika W713 Sorahi Nobar, Mona P0115 Stanca, A Michele P0587 Stromberg, Arnold J P0334 Sørensen, Anker P0053 Stanke, Mario W203 Strozzi, Francesco W106, W111 Sorgini, Crystal A. P0538 Stankova, Helena P0590, W014, W471 Strzala, Tomasz P1026 Sorrells, Mark E P0614, P0647, W746, Staton, Margaret P0969, P0995, W304, Stuardo, Marcela P0062 W763 W312, W878 Stubbs, Joe C23, P0790, P0792, W059 Soto-Cerda, Braulio W294 Staton, S. Evan P0950, W195 Studer, Bruno P1051, W300 Soucaze, Marion P0796 Staub, Jack E. P1049 Stupar, Robert M. P0717, P0722, P0771, Soula, Julie P1162 St Clair, Savanah M P0785, W767 P1004, W403, W597, W621 Sourdille, Pierre W691 Stec, Adrian O. P0722, W403, W621 Su, Baofeng P0245 Sousa, Tatiane Pires P1021 Steel, Victor P0986 Su, Handong P0525, W585 Souza, Alessandra Alves de P1103 Steffen, Joshua G. P0145 Su, Hang W587, W688 Souza, Anete P W821 Su, Wenyue P0182

336 Suarez-Gonzalez, Adriana W320 Sylvia, Megan P0161 Tao, Ye P0702 Suarez-Lopez, Victor P0259 Sysopha, Jessica W097 Tapio, Miika P0284 Subramaniam, Sabarinath W159, W481 Sze, Sing-Hoi W685, W848 Taran, Bunyamin W408 Subramanian, Jayasankar P0913, W328 Szövényi, Péter W618 Tarang, Ali R. P0502 Subramanian, Senthil P0718, P0719, Tabata, Satoshi P1121, W100 Tarekegne, Amsal P0532 W626 Tadele, Zerihun P1057 Taron, Christopher H P0050 Subudhi, Prasanta K. P0488 Tadeo, Francisco R W160 Tartarini, Stefano W326 Suda, Jan P0065 Tadiello, Alice P0892, P0893, P0902, Tatara, Edouard P0663, W882 Sudini, Harikishan P0208 P0903, W329 Tatarinova, Tatiana W093 Suggi Liverani, Furio W179 Tadmor, Yaakov (Kobi) W227, W229 Tatusova, Tatiana P0791, W516 Sugimoto, Kazuhiko P0495, P0503, Tagiri, Akemi P0660 Tavakol, Elahe W888 P0612 Taguchi, Akane P1063 Tayal, Aditi P0268, P1117 Sugiura, Masahiro P0223 Taguchi, Kazunori W805 Taylor, Daniel B P0478, W488 Suhre, Karsten W559 Tai, Thomas H. W742 Taylor, Gail P0001, W253, W308, W316 Sui, Shunzhao P1058, W550 Tainaka, Hitoshi P1166 Taylor, Jeremy F. P0275, P0280, P0290, Sullivan, Julie C23, P0790, P0792, W059 Takacs, Elizabeth M. P0873, W419 P0302, P0308, P0312, P0837, W111, Sultmanis, Stefanie P0179 Takagi, Hiroki P0788 W141, W147, W154, W252 Sumantri, Cece W109 Takagi, Kyoko P0706, P0713 Taylor, Kristen W147 Sun, Chuanyu P0273 Takahashi, Hirokazu P0800 Taylor, Lisa M. P0120 Sun, Chunyu P0156 Takahashi, Hiroyuki W805 Taylor, Nigel J. P0093, W125 Sun, Honghe W225, W229 Takahashi, Kazunori P0799 Teasdale, Matthew D. W457 Sun, Jiajie W155 Takahashi, Masakazu P0712 Tecle, Isaak Y. P1160, W724 Sun, Liang P0401, P0408, P0429, P1116 Takahira, Junko W796 Teh, Chee-Keng P0006, W555 Sun, Lianjun P0705, W755 Takai, Toshiyuki P0497 Teh, SLT W419 Sun, Luyang P0240, P0245 Takanashi, Hideki P1166 Teh, Soon Li P0887 Sun, Qi P0513, P0873, P0882, P0887, Takano, Tomoyuki P1122, P1125, Teingtham, Kanokwan P0556 W012, W419 P1141, P1161 Teixeira, Raffaella P0332 Sun, Qixin W460, W474 Takayama, Seiji P0800 Tekerek, Halil P0957 Sun, Qun P0651 Takazawa, Mai P0852 Telluri, Mohan W763 Sundararajan, Anitha P0533, P0534, Takebayashi, Yumiko W734 Temesgen, Banchgize Getie P0642 P0770 Takeuchi, Yoshinobu P0503 Tempelton, Alan P0447 Sundaresan, Venkatesan W856 Takita, Marco A. P0929, P1103, W161 Teng, Pan P0429 Sunil, Meeta P1046, P1047, P1072, Talag, Jayson W860 Tennessen, Jacob W711 W806 Talame, Valentina P0657, W508, W705 Tenreira, T. W324 Sunkar, Ramanjulu W006, W493 Talbert, Luther P0613, P0629, W032 Teotia, Sachin P0125, W729, W731 Surana, Priyanka P0192, W607 Talbot, Richard W135 Teramoto, Yumiko P1148 Suren, Haktan W317, W573 Taliercio, Earl P0700, W752 Terashima, Shin P1122, P1125, P1141, Surujdeo-Maharaj, Surendra W115 Talon, Manuel W160, W164 P1161 Suryanarayana, V P0788 Talukder, Shyamal K P1048, P1095 Terauchi, Ryohei P0788 Susko, Alexander Quentin W546 Tan, Cheng P1176 Terefe, Tarekegn P0643, P0649 Suteu, Dana P0526 Tan, Chor Tee P0625, P0634 Terenina, Elena P0361 Sutherland, Ben J. G. W438 Tan, Joon Sheong W557 Terol, Javier W160, W164 Sutter, Nathan B. P0328 Tan, Kar-Chun P0652 Terry, Matthew P0307 Sutton, Tim P0782 Tan, Xu W865 Teruya, Kuniko P0749 Suwabe, Keita P0799, P0800, P0801, Tan, Yan-Qiu P0805 Terzi, Valeria P0674 P1122, P1125 Tanabata, Takanari P0056 Tesso, Tesfaye T. P0563, W747 Suzuki, Akinori P0847 Tanaka, Charlene P0186, W677 Tetreault, Hannah P1030 Suzuki, Chika P0713 Tanaka, Yuri P0500 Thampi, Parvathy P0444 Suzuki, Go P0799, P0800, P0801, Tang, Cuiming P0215 Thao, Fue P1165 P1122, P1125 Tang, Guiliang P0125, W729 Thapa, Shree P P0449 Suzuki, Yutaka P1089, W527 Tang, Haibao P0003, W315, W377, Theißen, Günter P0797, P1008 Swain, Martin P0233, W041 W720 Thibaud-Nissen, Francoise P0051, Swaller, Timothy P0028 Tang, Ho Man P0183 P1115, W273, W514 Swamy, Mallikarjuna P0505 Tang, Jifeng P0940 Thibivilliers, Sandra W078 Swanson, John David P0113, P0149, Tang, Juliet P0539 Thilmony, Roger P0025, W566 P0159, P0161 Tang, Xiaomin P0849, W689 Thimmapuram, Jyothi P0024, P0759, Swanson, Mark P0146 Tang, Yuhong P0137 P1073 Swarbreck, David P1114, W313 Tânia, Agostini-Costa P0136 This, Patrice P0880 Swennen, Rony W070, W679 Taniguti, Lucas M. P0466 Thissen, Uwe P1189 Swiderski, Cyprianna P0343 Tanizawa, Yasuhiro C30, P1131 Thomas, Donald P0307 Swiecicka, Magdalena P0864 Tanno, Chigusa P0799 Thomas, George P0954 Swinburne, J. P0335, P0336 Tanskanen, Jaakko W871, W886 Thomas, Milton P0169, P0310, W142 Swofford, Ross P1000 Tao, Ryutaro W333, W622, W717 Thomas, Varghese W285 Syahanim, Salvatore P0005 Tao, Yaxiong P0375 Thomason, Jim P1119, P1138

337 Thompson, Henry J. P0755 Tosser-Klopp, Gwenola P0377, W137, Tuskan, Gerald A. P0003, P0217, W310, Thompson, Matthew W901 W151, W439, W446 W574, W720, W780 Thompson, Steve P0523 Toubiana, David P0855, W340 Tüyel, A. Umut P1036 Thompson, William F. W267, W741 Tounosu, Noriaki W526 Tyler, Brett W115, W674 Thomson, James P0082, P0091, P1100 Town, Christopher D W059, W315, W720 Tyler, Ludmila W097 Thomson, Michael J. P0489, P0509 Town, Christopher D. C23, P0003, Tyler-Smith, Chris W825 Thorgaard, Gary P0248 P0790, P0792, W410, W876 Tzarfati, Raanan P0611 Thornber, Carol P0159, P0161 Townsend, Belinda W808 Tzfadia, Oren P0855 Thrimawithana, Amali H. P0972 Toy, John P0016 Tzury, Galil W227 Thrower, Nick P0027 Toyoda, Atsushi C30, P0492, P1089, Uauy, Cristobal C18, P0602, P0642, Thudi, Mahendar P0781, P0782 P1131, W527 W033, W183, W465, W603 Thulin, Carl-Gustaf P0443 Toyooka, Kiminori P0685 Udall, Josh P1044 Thurber, Carrie S. P0561 Trainin, Taly P0901 Udall, Joshua A. C07, P0956, W281 Thurston, Yaqoob P0759 Tranchant-Dubreuil, Christine W180 Udvardi, Michael K. P0767 Thyssen, Gregory P0955, P0960, P0962 Traore, Amadou W442 Uhlen, Anne K. P0631 Tian, Bin P1095 Trapp, Clint P0107 Ullah, Hidayat P0527, P0536, P0545 Tian, Zhixi P0705, W753, W755 Trask, Stan P0226, P0230, P1107 Ullah, Zia P0527 Tibbits, Josquin W681 Treible, Wayne P1150 Um, Tae Young P0153, P0812 Tidwell, Jason P. P0307 Trenhaile, Melanie P0367 Umale, Pooja E. C11, P0697 Tiede, Tyler P0665 Trethowan, Richard P0619 Umekawa, Yui P0154 Tiffin, Peter L. P0765, P0768, P0771, Trick, Harold N. P0189, P1095, W352 Umemoto, Naoyuki W734 P1004 Trigiano, Robert N. P0881, W547 Uni, Zehava W655 Tilghman, Shelletta P0886 Tripahti, Leena P1102, W073 Unni, Deepak C02, P0432, P1154, W411 Tillett, Richard L. P1066, W347 Tripathi, Jaindra P1102, W073 Unni, Deepak R. P0267, P0268, P1117 Tillman, Barry P0740 Tripathi, Shailesh W778 Upadhyaya, Hari D P0208, P0739, Timms, Peter W635 Triska, Martin W093 P0742, P0783, W212 Timoney, Peter P0339 Troìa, Angelo W097 Upham, Kendall P0842 Timoshevskiy, Vladimir P0446, W743 Trovato, Andrea P0313 Uppalapati, Srinavasa R. P0137, P0774 Ting, Ngoot-Chin W556 Truco, Maria Jose P1062, W196, W380 Urbanski, Dorian F. P0692, W506 Tinker, Nicholas A. P0682, W536, W537, Trujillo, Diana P0736 Urinovska, Jana P0191 W538, W541 Trujillo, Joshua P0043, P0775 Urrutia, Maria P0918 Tinning, Matthew P0777 Truong, Sandra P0559 Usadel, Bjorn P1134, W735 Tiwari, Vijay K. P0590, W477 Trzasko, Meaghan P0149 Uszynski, Grzegorz P0052, P1129, Tixier-Boichard, Michèle P0392 Tsai, Chung-Jui P0976, W303 W502 Tizioto, Polyana C. P0290, P0308, Tsai, Mong-Hsun P0862 Utro, Filippo W357, W434 P0312 Tsai, Wen-shi P0941 Utsunomiya, Yuri Tani P0271, P0301, Toaff-Rosenstein, Rachel P0312 Tsavatapalli, Vijaya P1118 W109, W155, W387 Tobias, Christian W566 Tseng, Elizabeth P0049, P0073, P0393, Uzzaman, Md. Rasel P0316 Todd, Antonette P0757, P0759 W360 Vaattovaara, Aleksia P1133 Todd, James W811 Tsilo, Toi John P0643, P0646, P0649 Vadez, Vincent P0557, P0558 Todhunter, Rory P1193 Tsonis, Panagiotis A. P0446 Vaghchhipawala, Zarir P1099 Togawa, Roberto C P0743 Tsuchida, Cayla W380 Vaillancourt, Brieanne P0842, W567 Togawa, Roberto C. P0945 Tsuchiya, Rie P0491 Vajana, Elia W109 Tokunaga, Tsuyoshi P1166 Tsuda, Mai P0706 Valadão, Isabella B. P0011 Tollenaere, Reece P0824, W604 Tsujimoto, Hisashi P0939 Valarik, Miroslav P0589 Tollis, Marc P0445 Tsutsumi, Nobuhiro P1166 Valberg, Stephanie J. P0317, P0330, Toloue, Masoud P0040, P0436 Tuberosa, Roberto P0575, P0604, P0332, P0337 Tomaz, Tiago P0517, P0538 P0657, W508, W705 Valdes-Fragoso, Billy P0001, W308, Tomokazu, Masahiro P0612 Tublitz, Nathan P0073, W360 W316 Tomooka, Norihiko P0749 Tudor, Catalina Oana Tudor P0429 Valduriez, Patrick W448 Tonda, Raul P0360, W442 Tuggle, Christopher K. P0225, P0347, Valè, Giampiero P0587 Tondelli, Alessandro W888 W832 Valente, Guilherme Targino W821 Tondo, Cecile L. W119 Tuinstra, Mitch P0563 Valente, Luisa P1135 Tong, Wei P0484 Tullio, Rymer R. P0290 Valentini, Alessio W106, W109 Tonnis, Brandon P1080 Tulpova, Zuzana P0590 Vallarino, José G. P0919 Tononi, Paola P0587 Turakulov, Rust P0777 Valle, Giorgio W179 Toomajian, Christopher P0145, P0470 Turley, Rickie B. P0962 Valledor, Luis P0062 Torkamaneh, Davoud P0698 Turner, Sarah D. P1076 Vallejo, Roger L. P0252, W049 Torres, Eduardo P0874 Turner-Maier, Jason P1000, W090 Vallejo, Veronica P0867 Torres, G William P0305 Turnipseed, Stephanie P0686, W096 Vallejos, Carlos Eduardo P0752, W221 Torres, Maria Fernanda W559, W721 Turo, Chala J. P0468 Vallet, Jeffrey L. W827 Tortereau, Flavie P0377 Tushemereirwe, Wilberforce P1102, Valliyodan, Babu P0060, P0696, P0702 Tosky, Emily P0374 W073 Valpuesta, Victoriano P0919 Van, Sonny P0574, W474

338 Van 't Hof, Arjen P0433 Vasoya, Deepali P0419, W661 Vignes, Matthieu W849 Van Allen, Michelle W192 Vasquez-Gross, Hans C18, C19, P0988, Vijayaraghavan, Anupama P0093 van As, Pieter P0376, W824 W033, W183, W311, W569, W879 Vikram, Prashant P0594, P0596, W461 van Bers, Nikkie P0041 Vasudevan, Balaji P1099 Vila, Carles W131 van Binsbergen, Rianne P1172 Vatansever, Recep P1005 Vilar da Silva, Jose H. W651 van Boxtel, Jos W085 Vatsan, Anjana Raina C21, P0791, Vilarinho, Aloisio P0010, P1093, W625, VanBuren, Robert P0519 P1120 W814 Vandecasteele, Celine W180 Vaudin, M. P0335, P0336 Viljoen, Erika P1045 van de Geest, Henri P0871 Vaughn, Justin N P0198 Vilkki, Johanna P0284 Vandemark, George J. P0457, W207 Vaughn, Matt C23, P0790, P0792, Villa, Víctor Zamora P0594 Vandenberg, Albert W209, W408 P1113, P1181, W062, W267 Villate, Laure W795 van den Berg, Irene P0272 Vaughn, Matthew W059, W479 Villela, Luciana Cristine Vasques P0231 Van den houwe, Ines P0109 Vautrin, Sonia P0070, P0591 Vilstrup, Julia P0323 Van de Peer, Yves P0544, W202 Vázquez, Martín P. P0746 Vincent, Amy W832 Vandepoele, Klaas W431 Vee, Vanessa P0073, W139, W360, Vincent, Eric B. P0066 Vander Heiden, Jason P0060 W453, W861 Vincentz, Michel W821 van der Knaap, Esther P0856 Veeckman, Elisabeth W431, W564 Vincourt, Patrick P0950, P1162, W849 Van der Nest, Ariska P0458 Veenstra, Lynn D. P0614 Vinnakota, Abhinav C10 van der Vossen, Edwin P0940, W714 Veerkamp, Roel F. P1172 Vippin, Cina P0052 van der Werf, Adrie P1084 Veilleux, Richard P0845 Virdi, Kamaldeep S P0804 Vandewege, Michael W. W279 Veilleux, Richard E. P0842, P0846 Virk, Parminder S. P0505 Van de Wouw, Angela P0469 Vekemans, Xavier P0796 Visendi, Paul P0590, W014, W471 Van Deynze, Allen P0097, P0956, W072 Velasco, Dianne M. W219 Visger, Clayton J P1082 Van Eck, Joyce W615 Velasco, Riccardo P0892, P0893, Vishwakarma, Manish K P0739 Van Eck, Leon P0891 P0902, P0903, W329 Visser, Richard W736 Van Eenennaam, Alison P0306, P0312 Velazquez, Ahmed Missael Vargas Viswanathan, R. W815 van Eerdt, Bas P0036 P0324 Vitek, Christopher P0307 van Eijk, Michiel P0106, P0940, W511 Vellani, Tia W434 Vitte, Clémentine P0070 van Gessel, Nico W531 Vendramin, Elisa W326 Vitulo, Nicola P0587, W179 Van Glabeke, Sabine W431, W564 Vendramin, Vera P0575, W308 Vivek, Bindiganavile S. P0532 van Haeringen, Wim P0079 Venere, Paulo César P1021 Vivoda, Elisabetta W230 van Ham, Roeland P1189 Venglat, Prakash W035 Vizzotto, Giannina W326 van Heerwaarden, Joost P0992 Venkatesan, Aravind P1127, W448, Vlaic, Augustin W109 Vanhercke, Thomas W087 W841 Vlasova, Anna P0746, P0750, W201 van Kaauwen, Martijn P1061 Vensel, William P0186, W677 Vodkin, Lila P0205, P0207, P0715 Van Keuren-Jensen, Kendall P0448 Ventura, Ricardo W390 Vogel, John P1016, W099, W566, W780, Van Klink, John P0972 Verardo, Lucas L. P0366, P0368 W785 van Koeverden, Gerald P0026 Verbruggen, Nathalie P0809 Voillet, Valentin P0168 van Oeveren, Jan P0940 Verbyla, Arunas W681 Volante, Andrea P0587 van Oosterom, Erik W682 Verbyla, Klara W681 von Korff, Maria W888 van Orsouw, Nathalie J. P0940 Vercoe, Phil W135 von Wettberg, Eric J P0780, W394 van Parijs, Frederik W431, W564 Verde, Ignazio W326 Voskoboynik, Ayelet W758 VanRaden, Paul M. P0273 Verdelet, Daphné W421 Vosman, Ben P1061 Van Sluys, Marie-Anne W818, W819, Verderio, Gabriele W888 Voss, S. Randal P0446 W820 Verleih, Marieke P0234 Voytas, Dan P0093, W597, W600 Van Stijn, Tracey W146 Verma, Janu W123 Vrana, Jan P0086, P0191, P0582, Vanstraelen, Sigrid W809 Verma, Shailender Kumar P0622 P0586, W014, W471, W886 Van Tassell, Curtis P. P0279, W143 Vernimmen, Douglas P1114 Vrhovsek, Urska P0903 Vantini, Juliana da Silva P0184 Veroneze, Renata P0351 Vuong, Tri D. P0702, W706 van Workum, Wilbert P1061 Verweij, Walter P0144 Wachowski, Ludvik K W122 Varakumar, Pandit P0568, P1079 Vevey, Mario P0287 Waddell, Eli Nathaniel P0872 Varala, Kranthi K. W058 Viana, João Herbert W002 Wade, Claire W128 Varela, Eduardo Sousa P0231 Viands, Don W296 Wadl, Phillip W547 Varès, Didier W849 Vianello-Brondani, Rosana P. P0746 Wafula, Eric Kenneth P1078 Vargas, Lourdes W156 Vicentini, Renato P0012, W821 Wagner, Andreas W618 Varma, Ram P0265 Vicient, Carlos M. W871 Wagner, Geoffrey P0819 Varner, Dickson P0333 Vidal, Marjorie P0992 Wagner, Sarah T. P1078 Varshney, Rajeev K P0206, P0208, Vidal, Oriol W442 Wai, Ching Man W822 P0209, P0211, P0739, P0742, P0778, Vidigal, Bruna S. P0741, W866 Wai, Jennifer W180 P0781, P0782, P0783, P0788, P0789, Vidilla, Montse W442 Waide, Emily H. W832 W004, W009, W165, W212, W378, Vieira, Maria Lucia Carneiro P0074 Wakimoto, Hironobu P0511 W385, W425, W436, W763, W778 Viger, Maud P0001, W308, W316 Waksmunski, Andrea P1159 Vartanyan, Sergey W238 Viglino, Andrea P0313 Waldbieser, Geoff P0239, W036 Vaske, David P0111 Vignal, Alain P0392 Walenz, Brian P0765

339 Walia, Harkamal P0508 Wang, Xiaojun P0319 Wechter, Patrick W229, W230 Walker, Andrew P0873, W418 Wang, Xiaoping P0217 Weclawski, Jakub P0148 Walker, Lloyd T. P0965 Wang, Xiaowu P0814 Weeks, Nathan P0695 Wallington, Emma W603 Wang, Xinwang P0017 Weeks, Nathan T. C11, P0690, P0697, Walls, Ramona P1123, W487, W613 Wang, Xiu-Jie P0525, W585 P0737, W223 Walugembe, Muhammed P0395, P0399 Wang, Xiyin P0942, P1001, W069, Weers, Brock D. P0560, W682 Waminal, Nomar Espinosa P1081 W280, W583, W810, W865 Weglarz, Piotr W. P0704 Wanamaker, Steve P0204, P0658, Wang, Xue P0675 Wegrzyn, Jill C03, C19, P0987, P0988, P0784, P0785, W766, W767 Wang, Xuewen W746 P1153, W311, W332, W568, W569, Wandycz, Antoni P1146 Wang, Xueyan W011 W571 Wang, Changquan W085 Wang, Yan P0067 Wei, Hairong P0967, W309 Wang, Chao P0354 Wang, Yanan P0354 Wei, Sharon P1119 Wang, Chunkao P1176 Wang, Yanbo P0215, P0926 Wei, Yanling W296 Wang, Cong W587 Wang, Yanfang P0156 Weichselgartner, Tobias W524 Wang, Dechun P0734 Wang, Yanqiang P0406 Weigend, Steffen W668 Wang, Donghai W747 Wang, Yi P0156, P0221, P1043, W460, Weinig, Cynthia W101, W103 Wang, Fangfang W299 W474 Weirauch, Matthew T W358 Wang, Fei P0956 Wang, Ying P0411, P0425, P0427, Weisenfeld, Neil W090 Wang, Guo-Liang W606 W847 Weitemier, Kevin P0065, P0968 Wang, Hao P0576, W460 Wang, Yingxiang W584, W587, W688 Welch, Timothy J. P0252 Wang, Honglang P0842 Wang, Yong-Fei P0805 Wells, Darren M. P0057, W709 Wang, Hongyang P0354 Wang, Yonghong W700 Wells, James E. W288 Wang, Jaw-Fen P0862 Wang, Yuanyuan P0261 Wells, Kevin W147, W830 Wang, Ji-Rui W188 Wang, Yue-Jun P0152 Welsh, Amy P0387 Wang, Jian P0246, P0250 Wang, Yunzhu P0934 Welti, Ruth P0134 Wang, Jianchao P0319 Wang, Zan P0769 Weltzien-Rattunde, Eva W002 Wang, Jianping P0548, P0565, P0740, Wang, Zhenyi W583 Wempe, B P0563 W811 Wang, Zhenzhong W460, W474 Wen, Zixiang P0734 Wang, Jiaojiao P0694 Wang, Zhiquan P0345 Wendel, Jonathan F. W213, W631 Wang, Jin-teh P0941 Wang, Zi-Xuan P0492 Wendler, Neele W363 Wang, Jing W366 Wanke, Stefan P1078 Wendt, Toni P1090 Wang, Jirui P0228 Warburton, Marilyn P0539 Wenger, Alex P0690, W223 Wang, Juexin P0060, P0696 Ward, Jane W808 Wenzl, Peter P0594, W395, W461 Wang, Jun P0274, P0783, W009, W584 Ward, Ming P1109 Wesoły, Joanna P0864 Wang, Junping W297 Ware, Doreen P0555, P1119, P1138, Wessels, Mark P0385 Wang, Kangyu P0156 W750, W785, W858 Westergaard, Gastón P0746 Wang, Kevin P1098 Warinner, Christina G007, W240 Westhoff, Peter P0179 Wang, Li P0529, P0531, W583 Warkentin, Tom W210, W408 Weston, Dave P1138, W529, W781, Wang, Lipu P0635 Warner, Ryan M. P0867 W857 Wang, Magretha Diane P0292 Warren, Wesley W127, W667 Whalen, Jeanne W332 Wang, Min P0073, W139, W360, W453, Warschefsky, Emily W394 Wheeler, Nicholas P0969, W312, W878 W861 Warth, Benedikt P0130 Wheeler, Raymond P1165 Wang, Minghui P0882, W012 Warthmann, Norman P1023 Whelan, Sarah E. P0118 Wang, Mingli P0700, W747, W752 Wasserscheid, Jessica P1183 Whetten, Ross P0984 Wang, Ming Li P1080 Watanabe, Atsushi P0229 Whigham, Ehren W607 Wang, Mingxun W678 Watanabe, Masao P0799, P0800, Whitacre, Lynsey W252 Wang, Pauline P0773 P0801, P1122, P1125 Whitacre, Lynsey K. P0326, W154 Wang, Penghao W681 Watanabe, Satoshi P0706 Whitaker, Vance M. W335, W359 Wang, Qiang P1109 Watanabe, Tei W526 White, Paula A. P1022 Wang, Qishan W799 Waters, Amanda P0540 White, Stephen N. P0381 Wang, Rui P0680 Waters, Brian M P0605 Whitham, Steven A. P0721 Wang, Ruijia P0240 Watson, Andrea P0016 Whitlock, Michael C. W317, W573 Wang, Rui Peng P0940 Watson, Mick P1114, W788 Whitney, Brent W503 Wang, Schichen P0589, P0605, W183 Waugh, Robbie W713, W885 Whitworth, Kristin M. W830 Wang, Shan P0110 Wayne, Robert W636 Wiatros, Natalia P0480 Wang, Shichen W032 Wayne, Robert K. P0388, W131 Wicker, Thomas P0576, P0641, W460, Wang, Shuilian W109 Weaber, Robert P0296 W868, W889 Wang, Tongli W317 Wear, Emily E. W267, W741 Wideman, Robert F P0412, P0414, Wang, Wei W894 Weber, Andreas P. M P0179 W672 Wang, Weiping P0042, P0077 Weber, Andreas PM P1084, W343 Widmer, Franco P1051, W300 Wang, Wendy W. P0017 Weber, Gregory M. P0250 Wieckhorst, Silke P0553 Wang, Wenling P1093, W625 Weber, Kristina P0306 Wieczorek, Doug P0066 Wang, Xiao-Qiang P0484 Webster, Alexandre P0123, W728 Wiegert-Rininger, Krystle P0867 Wang, Xiaodong C18, W033, W603 Webster, Teresa A. P0265 Wielgus, Susan P0842

340 Wiens, Gregory D. P0252, P0254 Worley, Kim W532 Xu, Jie W629 Wierzbicki, Heliodor P1026 Worley, Kim C. P0073, W068, W139, Xu, Kejing P0135 Wiggans, George R. P0266, P0273, W360, W453, W861 Xu, Kenong P0895 P0279, W143, W150 Worren, Merete M. P0237 Xu, Lingyang P0277, W141 Wight, Charlene P. W538 Wright, Chris P0031, P0046 Xu, Pei P0784 Wijoyo, Stanley P1129 Wright, Kalen Nicole P0124 Xu, Rongyan W587 Wildhagen, Henning W308 Wright, Mark P0490 Xu, Ruo W607 Wildschutte, Julia W131 Wright, Matthew W566 Xu, Shizhong W386, W803 Wileman, Ben P0264 Wright, Stephen I. W194, W894 Xu, Steven S. P0575, P0607, P0651, Wilkerson, Curtis W094 Wrzaczek, Michael P1133 P0964, W016, W365 Wilkins, Marc R. W635 Wu, Cheng-Cang Charles P0069, W017, Xu, Weihui P0192 Wilkinson, Michael J P0233, P0475, W350 Xu, Wenwei W685 W041 Wu, Di P0969 Xu, Xiangyang P0702 Willems, Glenda W809 Wu, Haifang P0077 Xu, Xuewen P0354 Willerslev, Eske P0323, P0324 Wu, Hao P1093, W625 Xu, Xun P1085 Willhoit, Megan E. P0027 Wu, Jianzhong P0496 Xu, Yong W225, W229 Williams, Angela H. P0468 Wu, Jie P0077 Xu, Yunbi W772 Williams, John P0313, W106, W108, Wu, Jun P0905, P0908, P0909, P0910 Xu, Zhanyou P0961 W109, W110, W111 Wu, Juyou P0905 Xue, Cheng P0909 Williams, Mark A. P0846 Wu, Kati W603 Xue, Liang-Jiao P0976, W303 Williams, Paul P0539 Wu, Keyi P1191 Xue, Qingwu P0625, P0634 Williamson, Robert J. W194, W894 Wu, Le-Shin P1151 Xue, Shiming P0600 Willis, John H. P1034 Wu, Wei P0183, P0522 Xun, Xu P0783 Wilson, Joan P0030 Wu, Xiao-Lin P0266, P1191 Yacoub, Haitham P0420 Wilson, L P1030 Wu, Xiaohui P0182 Yadgary, Liran W655 Wilson, Miranda L. P0302, W252 Wu, Xiaoming P0820, P0821, W105 Yagi, Kouhei P0032 Wilson, Pip P1023 Wu, Yong-pei P0501 Yalcin Mendi, Yesim P1031, P1101 Wilson, Richard K W127 Wu, Yuye W747 Yamada, Naohiro P0706 Wincker, Patrick P0597, W210, W473, Wu, Zhe P0935 Yamada, Toshihiko P0026, W301, W563 W795 Wu, Zhiqiang P1052 Yamagishi, Michel E Beleza P0289, Windham, Michael D. W190 Wubben, Martin P0462, P0465 P1170 Wing, Rod A. P0487, W449, W698, Wuerschum, Tobias W608 Yamaguchi, Hirotaka P0847 W860 Wüest, Rafael O. W797 Yamaguchi, Naoya P0713 Wingen, Luzie U. P0057, W709 Wulff, Brande W034 Yamaguchi, Takuya P0495 Wingfield, Mike P0458 Wurah, Ornogeah P1188 Yamamoto, Eiji P0847 Wintermantel, William M. P0440 Wurm, Yannick W524 Yamamoto, Naoki P1161 Winters, Ana W076 Wyatt, Nathan A. P0650 Yamamoto, Takashi W734 Wise, Aaron W358 Wyschetzki, Katharina W524 Yamamoto, Toshio P0497 Wise, Roger P0192, P0658, W607 Wyse, Donald L. P0835 Yamane, Hisayo W333 Wisniewski, Michael P0875, W592 Xavier, Alencar P0689, P1180 Yamanouchi, Utako P0503 Wisniewski, Michael E. P0897 Xavier, Mauro A. P0547 Yamazaki, Yukiko P0491, P0492 Witek, Agnieszka I P0844 Xi, Kequan P0600 Yamini, K N. P0788 Witek, Kamil P0844 Xi, Zhenxiang P1086 Yan, Jianbing W224, W775 Wittendorp, Jon P0030 Xia, Ling P0052 Yan, Jun P1027 Wojcieszek, Michal Krzysztof P0032, Xiang, Daoquan W035 Yan, Liuling P0624 P0476 Xiang, Ruidong W135 Yan, Wei P0410 Wolf, Paul G. P1082, P1085, P1086 Xiao, Changchun W730 Yan, Yiyuan P0417 Wolfe, Cari P0279, W143 Xiao, Hua P0846 Yanagui, Karina P0543 Wolfe, Marnin W124 Xiao, Lichan W460, W474 Yandell, Mark W524, W569 Woltinge, Dennis P0940 Xiao, Qiying P0809 Yang, Dewei P0182 Womack, James P0308, W106 Xie, Fuliang P0022 Yang, Guojun W869 Won, Jungyeon P0103, P0904, P0906, Xie, Mingtang W358 Yang, Jessica P0773 P0907 Xie, Qingmei W643 Yang, Jinliang P0131 Wone, Bernard W. M. P0155 Xie, Shaojun P0525 Yang, Jin Ok P1110, P1137, P1169 Wong, Debbie P0639 Xie, Zidian W582 Yang, Jinzeng P0258 Wong, Eric A. W655 Xin, Xu W888 Yang, Kui P0354 Wong, Gane Ka-Shu P1009, P1085, Xin, Zhanguo P0555, P0561, W750 Yang, Liguo W109 P1086 Xing, Yue P0278 Yang, Ning P0410, P0417 Wong, Joan P0472, P1013, W436 Xiong, Zhongguo P1071 Yang, Sam P0956 Wood, Kelsey P0460, P0472, W436 Xu, Dong P0060, P0694, P0696 Yang, Shanshan P0873, W174, W419 Woodhouse, Margaret R. W629 Xu, Huaqin W196 Yang, Shouping P0202 Woody, Scott T W692 Xu, Jiajia W266 Yang, Tae-Jin P0437, P1081 Woolliams, John A. W533 Xu, Jiang P0077 Yang, Tianfu P0345 Worku, Mulumebet P0114 Xu, Jianlong W777 Yang, Wei P0783

341 Yang, Xiaohan P0150, W310, W347 You, Frank M. P0160, P1039, P1043, Zazula, Grant W239 Yang, Xiping P0548, P0565, W811 W188, W291, W294, W460 Zebu Genome Consortium, The W387 Yang, Yang W083 You, Weiwei P0262, W043 Zehnsdorf, Maik P0746 Yang, Yinong W244, W702 You, Youngsook P1060 Zeisek, Vojtěch P0065 Yano, Kentaro P0800, P0801, P0852, Youens-Clark, Ken P1119 Zeisler, Viktoria P0912 P1122, P1125, P1141, P1161, P1166 Young, Amy P0327 Zembower, Nicole P0969, W304, W312 Yano, Masahiro P0496, P0503, W170 Young, Carolyn W289, W298 Zeng, Erliang P1190 Yano, Ryoichi P0712 Young, Nelson D. W097 Zeng, Liang P0702 Yao, Chengguo W791 Young, Nevin D. P0736, P0765, P0768, Zeng, Peng P0702 Yao, Feng-Yong P0805 P0770, P0771 Zeng, Qianchun P1093, W625 Yao, Jianbo P0246, P0248, P0250, Youssef, Helmy M. P0670 Zeng, Qifan P0241, P0245 P0251, P0387 Yu, Chang Yeon P0026, W563 Zeng, Xi P0169 Yao, Jun P0242, P0245 Yu, Deyue W003 Zeng, Zheng P0444 Yao, Xiaoming P0274 Yu, Haowei W359 Zeng, Zixian P0842 Yao, Zhen P0227 Yu, Jiang W135 Zerlotini, Adhemar P0290 Yaping, Feng P0303 Yu, Jianming P0563, P1010, P1193, Zhai, Zhiyang P0546, W814, W833 Yaremcio, Barry P0165 W384, W747 Zhan, Shing H P1086 Yasue, Hiroshi P1148 Yu, Jie P0484 Zhang, An P0805 Yasumoto, Shuhei W734 Yu, Jing C13, C14, P0888, P0953, Zhang, Baohong P0022 Yazawa, Takayuki P0660 P0961, W874 Zhang, Chengcheng W078 Ye, Changrong P0507 Yu, John Z. P0961 Zhang, Dapeng W114 Ye, Heng W595 Yu, Obarley W212 Zhang, Dong W748 Ye, Juanying W584 Yu, Qibin P0215 Zhang, Fan P0943 Ye, Rosa P0069, W350 Yu, Qingyi W299, W812 Zhang, Feng W600 Ye, Xinfu P0182 Yu, Xiaoqing W747 Zhang, Fu-min W703 Yeam, Inhwa P0861 Yu, Yeisoo P1081, W860 Zhang, Gengyun W009 Yeaman, Sam W317, W573 Yu, Yuan P0215 Zhang, Guojie P0274 Yee, Muh-ching P1016 Yuan, Daojun W217 Zhang, Guorong P0625, P0634 Yeh, Cheng-Ting P0183, P0522 Yuan, Jiazheng P0734 Zhang, Guoyu P0943 Yelick, Katherine W713 Yuan, Jing P0094 Zhang, Haiying W225 Yen, Yang W464 Yuan, Jingwei P0410 Zhang, Hong-Bin P0156, P0319, P0964, Yendrek, Craig P0517, P0538 Yuan, Luxia W474 W016, W685, W848 Yeo, Gene W. C25, P1149 Yuan, Yaowu W617 Zhang, Hongtao P0187 Yeom, Seon-In P0863 Yucebilgili Kurtoglu, Kuaybe P1005 Zhang, Hua P1109 Yepes, Marcela W178 Yue, Chaoyin P0135 Zhang, Huanmin P0416, W643 Yerka, Melinda P0016 Yue, Chengyan W335 Zhang, Jianfeng P0773 Yesiloglu, Turgut P1101 Yue, Wei P0470 Zhang, Jianwei W860 Yi, Guoqiang P0410 Yue, Xiangpeng P0276 Zhang, Jiaren P0242, P0245 Yigit, Erbay P0043 Yun, ByoungKook P0484 Zhang, Jie W225 Yildiz, Mehtap P1077 Yun, Kil-Young P0822, P0823 Zhang, Jinbo W225 Yim, Hyung-Soon P0274 Yun, Lan P1049 Zhang, Jing P0060 Yim, Won Cheol P0150, P0155, P0218, Yurchenko, Olga W086 Zhang, Jisen W822 P1066, W347 Yurco, Julia M. P0314 Zhang, Junli P0637, W393 Yin, Chuntao P0461 Yusnizar, Yulnawati W109 Zhang, Lan W583 Yin, Hengfu W310, W347 Yuyama, Priscila Mary P0213 Zhang, Li P0752, W221 Yin, Rui P0156 Zacarías, L. P0667 Zhang, Meiping P0156, P0964, W016, Yokota, Akiho P0939 Zaccagna, Paolo P0578 W685, W848 Yokoyama, Koji P1122, P1125 Zaccaron, Alex Z. P0456 Zhang, Mingyi P0607 Yonash, Nissim W715 Zaccaron, Marcio L. P0456 Zhang, Mingyue P0909 Yonemaru, Jun-ichi P0496 Zaitlin, David P1083 Zhang, Ning W700 Yoo, Ji Hye P0026, W563 Zaldei, Alessandro P0001, W316 Zhang, Peng P1071 Yoo, Shinjae P1138 Zale, Janice P0546, W814, W833 Zhang, Qifa W386 Yoon, Duhak P0299 Zaluski, Rodrigo P0439 Zhang, Qijun P0964, W016 Yoon, Min-Young P0484 Zamir, Daniel P0855 Zhang, Shaoling P0905, P0908, P0909, Yoon, Sangwoong W566 Zander, Manuel Matias P0469 P0910 Yoon, SH P0325 Zander, Mark W358 Zhang, Shujun W109 Yordanov, Yordan W594 Zandkarimi, Hana P0194, W898 Zhang, Songhua P0113 York, Larry M. P0057, W709 Zanella, Ricardo P0176, P0418 Zhang, Wei P0607, W212 Yorke, James A W568 Zantinge, Jennifer L. P0600 Zhang, Wenguang W137 Yorke, James A. P0988, W569 Zarth, Sara P0358 Zhang, Wentao P0635 Yoshida, Takuhiro P0154, P0685 Zatoń-Dobrowolska, Magdalena P1026 Zhang, Xiao-Ning P0802, W676 Yoshinaga, Arata P1042, W293 Zatserklyana, Oleksandra P0726 Zhang, Xiaoguo P0010, W814 Yoshioka, Terutaka W163 Zayed, Adel W264 Zhang, Xiaoyu W581 Zayed, Amro P0439 Zhang, Xin P0375

342 Zhang, Xinquan P0212 Zogibi, Onizan Godian P0451 Zhang, Xinzhong P0625 Zohar, Matat P0901 Zhang, Yang P0964, W016, W685, Zohren, Jasmin P1185, W313 W848 Zorilla, Jassmine W070, W679 Zhang, Yi-Jing P0152 Zou, Hongda P0611 Zhang, Yu P0354 Zuccolo, Andrea W326 Zhang, Yuan-Ming P1193 Zumstein, Kristina W356 Zhang, Zhanyuan P1099 Zuo, Bo P0174 Zhang, Zhiwu P1158, P1193, W801 Zuo, Fuyuan W109 Zhao, Bingyu P0022, P0212, P0811 Zuo, Tao P1012 Zhao, Dongyan W870 Zurn, Jason D. P0644 Zhao, Hua P0026, W563 Zwer, Pamela P0682, W536 Zhao, Jing P0515 Zynda, Greg P1181 Zhao, Kangmei W078 Zhao, Meixia P0705, W755 Zhao, Patrick Xuechun C16, C20, P0688, P0794 Zhao, Pengshan P0671, W880 Zhao, Wei P0274 Zhao, Xinghua W190 Zhao, Yiqiang P0406 Zhao, Zhenhua P0411 Zhebentyayeva, Tatyana P0969, P0995, W312 Zheng, Chunfang P1019, W180 Zheng, Peizhong P0523 Zheng, Ping C13, C14, P0763, P0888, P0953, W162 Zheng, Xiao-ming W703 Zheng, Xiuting P0956 Zheng, Yi W229 Zhong, Gan-Yuan P0895 Zhong, Shaobin P0680 Zhou, Bo W606 Zhou, Huaijun P0397, P0411, P0425, W535, W649, W770, W847 Zhou, Hui P0098 Zhou, Peng P0765, P0768, P0771 Zhou, Ran W008, W720 Zhou, Shiguo W139 Zhou, Xiang W826 Zhou, Xin P0707 Zhou, Yongqiang P0364 Zhou, Zeyu W357 Zhou, Zhou P0710, P0732 Zhu, Feng P0175 Zhu, Jian-Kang W242 Zhu, Jianrong P0098 Zhu, Jun W848 Zhu, Lan W078 Zhu, Tingting P0574, W188, W460, W474 Zhu, Xianwen P0607 Zhu, Xinguang P0126, W342 Zia, Muhammad Anjum P0946 Ziegler, Greg W746 Zielinski, Kelsey P0552 Ziems, Laura Ashlee P0678 Zieve, Jacob C19, W311 Zimin, Aleksey P0988, W106, W524, W568, W569, W570 Zimmermann, Niklaus E. W797 Zinkgraf, Matthew W307 Zinkgraf, Matthew S. W306, W742

343 ENTRANCE Pickup Presentation Poster Networking Networking Quartzy cards by Quartzy cards by ENTRANCE Plant &AnimalGenomeXXIIIConference 0 103 102 116 118 120 125 122 127 124 129 126 128 ENTRANCE ENTRANCE COFFEE 401 SERVICE 402 403 1 100 101 200 201 300 301 400 404 2 99 102 199 202 299 302 399 405 3 98 103 198 203 298 303 398 406

105 107 109 111 119 131 133 4 97 104 197 204 297 304 397

Town &Country Resort&ConventionCenter 407 5 96 105 196 205 296 305 396 408 6 95 106 195 206 295 306 395 409 7 94 107 194 207 294 307 394

0 203 205 202 207 204 206 209 208 212 218 223 220 225 222 227 224 226 228 230 410 8 93 108 193 208 293 308 393 411 9 92 109 192 209 292 309 392 412 10 91 110 191 210 291 310 391 413 11 90 111 190 211 290 311 390 414 12 89 112 189 212 289 312 389 415 13 88 113 188 213 288 313 388 416

219 231 233 14 87 114 187 214 287 314 387 417 15 86 115 186 215 286 315 386 418 16 85 116 185 216 285 316 385 419

17 84 117 184 217 284 317 384 January 10-14,2015

302 318 323 325 320 327 324 329 326 328 330 420 18 83 118 183 218 283 318 383 421 19 82 119 182 219 282 319 382 422

Grand ExhibitHall 20 81 120 181 220 281 320 381 423 344 21 80 121 180 221 280 321 380 424 San Diego, CA 22 79 122 179 222 279 322 379 425 23 78 123 178 223 278 323 378 426

303 307 309 319 331 333 24 77 124 177 224 277 324 377 427 25 76 125 176 225 276 325 376 428 26 75 126 175 226 275 326 375 429

0 403 405 402 407 404 409 406 408 419 421 418 420 422 427 424 429 426 431 428 433 430 432 430 R R O O D P B E A S S T SERVICE

COFFEE 431 432 27 74 127 174 227 274 327 374 433 28 73 128 173 228 273 328 373 434 29 72 129 172 229 272 329 372 435 30 71 130 171 230 271 330 371 436

423 31 70 131 170 231 270 331 370 437 32 69 132 169 232 269 332 369 438 33 68 133 168 233 268 333 368 439

0 503 505 502 507 504 509 506 508 519 523 518 525 522 527 524 526 531 533 530 532 34 67 134 167 234 267 334 367 440 35 66 135 166 235 266 335 366 441 36 65 136 165 236 265 336 365 442 37 64 137 164 237 264 337 364 443 38 63 138 163 238 263 338 363 444 39 62 139 162 239 262 339 362 445 40 61 140 161 240 261 340 361 446

511 529 41 60 141 160 241 260 341 360 447 42 59 142 159 242 259 342 359 448 43 58 143 158 243 258 343 358 449

612 618 620 622 624 626 628 630 632 44 57 144 157 244 257 344 357 450 SERVICE COFFEE 45 56 145 156 245 256 345 356 451 46 55 146 155 246 255 346 355 452 47 54 147 154 247 254 347 354 453 48 53 148 153 248 253 348 353 49 52 149 152 249 252 349 352 Move In/Out Move Keep Clear for Freight for 50 51 150 151 250 251 350 351

SERVICE 613 615 617 619 621 623 625 627 629 631 633 COUNTER Plant & Animal Genome XXIII Conference January 10-14, 2015

EE EE EE 12461245 1247 1248 1249 1250 1244 1243 1242 1241 1240 1239 1238 12241195 1225 1226 1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237 1211 1212 1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1194 1193 1192 1191 1190 1189 1188 1187 1186 1185 1184 1183 1182 1209 1210 1208 1207 1206 1205 1204 1203 1202 1201 1200 1199 1198 1197 1196

RESTROOMS 1155 1156 1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170 1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1153 1154 1152 1151 1150 1149 1148 1147 1146 1145 1144 1143 1142 1141 1140 1139 1138 1137 1136 1135 1134 1133 1132 1131 1130 1129 1128 1127 2 6 7 1113 1114 1115 111 111 1118 1119 1120 1121 1122 1123 1124 1125 1126 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 111 1097 1098 1096 1095 1094 1093 1092 1091 1090 1089 1088 1087 1086 1085 1084 1083 1082 1081 1080 1079 1078 1077 1076 1075 1074 1073 1072 1071 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1041 1042 1040 1039 1038 1037 1036 1035 1034 1033 1032 1031 1030 1029 1028 1027 1026 1025 1024 1023 1022 1021 1020 1019 1018 1017 1016 1015 EE 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 985 986 984 983 982 981 980 979 978 977 976 975 974 973 972 971 970 969 968 967 966 965 964 963 962 961 960 959 958 3 8 2 954 955 956 957 949 950 951 95 95 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 94 929 930 928 927 926 925 924 923 922 921 920 919 918 917 916 915 914 913 912 911 910 909 908 907 906 905 904 903 902 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 873 874 872 871 870 869 868 867 866 865 864 863 862 861 860 859 858 857 856 855 854 853 852 851 850 849 848 847 846 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 817 818 816 815 814 813 812 811 810 809 808 807 806 805 804 803 802 801 800 799 798 797 796 795 794 793 792 791 790 3 7 8 784 785 786 78 78 789 EE 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 78 761 762 760 759 758 757 756 755 754 753 752 751 750 749 748 747 746 745 744 743 742 741 740 739 738 737 736 735 734

AGUACULTURE POSTER SESSION 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733

SUNDAY 8AM-12PM 705 706 704 703 702 701 700 699 698 697 696 695 694 693 692 691 690 689 688 687 686 685 684 683 682 681 680 679 678 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 3 2 649 650 648 647 646 645 644 643 642 641 640 639 638 637 636 635 634 633 632 631 630 629 628 627 626 625 624 62 62 8 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 61 619 620 621 593 594 592 591 590 589 588 587 586 585 584 583 582 581 580 579 578 577 576 575 574 573 572 571 570 569 568 567

EL 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 537 538 536 535 534 533 532 531 530 529 528 527 526 525 524 523 522 521 520 519 518 517 516 515 514 513 512 511

EE 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 481 482 480 479 478 477 476 475 474 473 472 471 470 469 468 467 466 465 464 463 462 461 460 459 458 457 456 455 454

EXIT

ENTRANCE Town & Country Resort & Convention Center Lower Exhibit Hall San Diego, CA

345

NOTES ______

346

NOTES ______

347 348