First Identification and Molecular Subtyping of Blastocystis Sp. in Zoo
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Are Blastocystis Species Clinically Relevant to Humans?
Are Blastocystis species clinically relevant to humans? Robyn Anne Nagel MB, BS, FRACP A thesis submitted for the degree of Doctor of Philosophy at the University of Queensland in 2015 School of Veterinary Science Title page Culture of human faecal specimen Blastocystis organisms, vacuolated and granular forms, Photographed RAN: x40 magnification, polarised light ii Abstract Blastocystis spp. are the most common enteric parasites found in human stool and yet, the life cycle of the organism is unknown and the clinical relevance uncertain. Robust cysts transmit infection, and many animals carry the parasite. Infection in humans has been linked to Irritable bowel syndrome (IBS). Although Blastocystis carriage is much higher in IBS patients, studies have not been able to confirm Blastocystis spp. are the direct cause of symptoms. Moreover, eradication is often unsuccessful. A number of approaches were utilised in order to investigate the clinical relevance of Blastocystis spp. in human IBS patients. Deconvolutional microscopy with time-lapse imaging and fluorescent spectroscopy of xenic cultures of Blastocystis spp. from IBS patients and healthy individuals was performed. Green autofluorescence (GAF), most prominently in the 557/576 emission spectra, was observed in the vacuolated, granular, amoebic and cystic Blastocystis forms. This first report of GAF in Blastocystis showed that a Blastocystis-specific fluorescein-conjugated antibody could be partially distinguished from GAF. Surface pores of 1m in diameter were observed cyclically opening and closing over 24 hours and may have nutritional or motility functions. Vacuolated forms, extruded a viscous material slowly over 12 hours, a process likely involving osmoregulation. Tear- shaped granules were observed exiting from the surface of an amoebic form but their identity and function could not be elucidated. -
Eukaryotes Blastocystis Species and Other Microbial Cluster Assembly
Evolution of the Cytosolic Iron-Sulfur Cluster Assembly Machinery in Blastocystis Species and Other Microbial Eukaryotes Anastasios D. Tsaousis, Eleni Gentekaki, Laura Eme, Daniel Gaston and Andrew J. Roger Eukaryotic Cell 2014, 13(1):143. DOI: 10.1128/EC.00158-13. Published Ahead of Print 15 November 2013. Downloaded from Updated information and services can be found at: http://ec.asm.org/content/13/1/143 http://ec.asm.org/ These include: SUPPLEMENTAL MATERIAL Supplemental material REFERENCES This article cites 50 articles, 28 of which can be accessed free at: http://ec.asm.org/content/13/1/143#ref-list-1 on February 24, 2014 by Dalhousie University CONTENT ALERTS Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this article), more» Information about commercial reprint orders: http://journals.asm.org/site/misc/reprints.xhtml To subscribe to to another ASM Journal go to: http://journals.asm.org/site/subscriptions/ Evolution of the Cytosolic Iron-Sulfur Cluster Assembly Machinery in Blastocystis Species and Other Microbial Eukaryotes Anastasios D. Tsaousis,a,b Eleni Gentekaki,a Laura Eme,a Daniel Gaston,a Andrew J. Rogera ‹Centre for Comparative Genomics and Evolutionary Bioinformatics, Dalhousie University, Department of Biochemistry and Molecular Biology, Halifax, Nova Scotia, Canadaa; Laboratory of Molecular and Evolutionary Parasitology, School of Biosciences, University of Kent, Canterbury, United Kingdomb The cytosolic iron/sulfur cluster assembly (CIA) machinery is responsible for the assembly of cytosolic and nuclear iron/sulfur clusters, cofactors that are vital for all living cells. This machinery is uniquely found in eukaryotes and consists of at least eight Downloaded from proteins in opisthokont lineages, such as animals and fungi. -
Nauka Technologia Jakość Science Technology Quality
Nauka Technologia Jakość Science Technology Quality Nr 2 (119) Kraków 2019 Rok 26 Redaktor naczelny: prof. dr hab. Lesław Juszczak; e-mail: [email protected]; tel. 12 662-47-78 Zastępca redaktora naczelnego: dr hab. Mariusz Witczak; e-mail: [email protected] Sekretarz redakcji (kontakt z autorami): mgr inż. Jadwiga Ślawska; e-mail: [email protected]; tel. 12 662-48-30; 609-800-458 Redaktorzy tematyczni: prof. dr hab. Grażyna Jaworska (żywność pochodzenia roślinnego), prof. dr hab. Danuta Kołożyn-Krajewska (mikrobiologia, bezpieczeństwo i higiena żywności), prof. dr hab. Krzysztof Krygier (technologia tłuszczów, żywność funkcjonalna), prof. dr hab. Irena Ozimek (zachowania konsumen- tów na rynku żywności), prof. dr hab. Edward Pospiech (nauka o mięsie), dr hab. Anna S. Tarczyńska (mle- czarstwo, zarządzanie jakością) Redaktor językowy (język polski): dr Anna Piechnik Native speaker: Stanley Holt (Bolton, UK) Redaktor statystyczny: dr hab. Mariusz Witczak Stali współpracownicy: dr Grażyna Morkis (Kraków) Rada Naukowa: prof. dr hab. Tadeusz Sikora (przewodniczący), prof. dr hab. Barbara Baraniak, prof. dr Henryk Daun (USA), prof. dr hab. Teresa Fortuna, prof. dr hab. Mariola Friedrich, prof. dr Jozef Golian (Słowacja), prof. dr hab. Anna Gramza-Michałowska, prof. dr hab. Waldemar Gustaw, prof. dr Jerzy Jankun (USA), prof. dr hab. Henryk Jeleń, prof. dr Miroslava Kačániová (Słowacja), prof. dr hab. Agnieszka Kita, prof. dr Józef Korolczuk (Francja), prof. dr hab. Andrzej Lenart, prof. dr hab. Zdzisława Libudzisz, prof. dr hab. Katarzyna Majewska, prof. dr hab. Jan Oszmiański, prof. dr hab. Mariusz Piskuła, prof. dr Jan Pokorny (Czechy), prof. dr Roman Przybylski (Kanada), prof. dr hab. Piotr Przybyłowski, prof. -
Ectocarpus: an Evo‑Devo Model for the Brown Algae Susana M
Coelho et al. EvoDevo (2020) 11:19 https://doi.org/10.1186/s13227-020-00164-9 EvoDevo REVIEW Open Access Ectocarpus: an evo-devo model for the brown algae Susana M. Coelho1* , Akira F. Peters2, Dieter Müller3 and J. Mark Cock1 Abstract Ectocarpus is a genus of flamentous, marine brown algae. Brown algae belong to the stramenopiles, a large super- group of organisms that are only distantly related to animals, land plants and fungi. Brown algae are also one of only a small number of eukaryotic lineages that have evolved complex multicellularity. For many years, little information was available concerning the molecular mechanisms underlying multicellular development in the brown algae, but this situation has changed with the emergence of Ectocarpus as a model brown alga. Here we summarise some of the main questions that are being addressed and areas of study using Ectocarpus as a model organism and discuss how the genomic information, genetic tools and molecular approaches available for this organism are being employed to explore developmental questions in an evolutionary context. Keywords: Ectocarpus, Life-cycle, Sex determination, Gametophyte, Sporophyte, Brown algae, Marine, Complex multicellularity, Phaeoviruses Natural habitat and life cycle Ectocarpus is a cosmopolitan genus, occurring world- Ectocarpus is a genus of small, flamentous, multicellu- wide in temperate and subtropical regions, and has been lar, marine brown algae within the order Ectocarpales. collected on all continents except Antarctica [1]. It is pre- Brown algae belong to the stramenopiles (or Heter- sent mainly on rocky shores where it grows on abiotic okonta) (Fig. 1a), a large eukaryotic supergroup that (rocks, pebbles, dead shells) and biotic (other algae, sea- is only distantly related to animals, plants and fungi. -
A Distinct Lineage of Giant Viruses Brings a Rhodopsin Photosystem to Unicellular Marine Predators
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators David M. Needhama,1, Susumu Yoshizawab,1, Toshiaki Hosakac,1, Camille Poiriera,d, Chang Jae Choia,d, Elisabeth Hehenbergera,d, Nicholas A. T. Irwine, Susanne Wilkena,2, Cheuk-Man Yunga,d, Charles Bachya,3, Rika Kuriharaf, Yu Nakajimab, Keiichi Kojimaf, Tomomi Kimura-Someyac, Guy Leonardg, Rex R. Malmstromh, Daniel R. Mendei, Daniel K. Olsoni, Yuki Sudof, Sebastian Sudeka, Thomas A. Richardsg, Edward F. DeLongi, Patrick J. Keelinge, Alyson E. Santoroj, Mikako Shirouzuc, Wataru Iwasakib,k,4, and Alexandra Z. Wordena,d,4 aMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039; bAtmosphere & Ocean Research Institute, University of Tokyo, Chiba 277-8564, Japan; cLaboratory for Protein Functional & Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan; dOcean EcoSystems Biology Unit, GEOMAR Helmholtz Centre for Ocean Research, 24105 Kiel, Germany; eDepartment of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; fGraduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama 700-8530, Japan; gLiving Systems Institute, School of Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4SB, United Kingdom; hDepartment of Energy Joint Genome Institute, Walnut Creek, CA 94598; iDaniel K. Inouye Center for Microbial Oceanography, University of Hawaii, Manoa, Honolulu, HI 96822; jDepartment of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, CA 93106; and kDepartment of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo 113-0032, Japan Edited by W. Ford Doolittle, Dalhousie University, Halifax, Canada, and approved August 8, 2019 (received for review May 27, 2019) Giant viruses are remarkable for their large genomes, often rivaling genomes that range up to 2.4 Mb (Fig. -
How Is the COVID-19 Outbreak Affecting Wildlife Around the World?
Open Journal of Ecology, 2020, 10, 497-517 https://www.scirp.org/journal/oje ISSN Online: 2162-1993 ISSN Print: 2162-1985 How Is the COVID-19 Outbreak Affecting Wildlife around the World? Abdel Fattah N. Abd Rabou Department of Biology, Faculty of Science, Islamic University of Gaza, Gaza Strip, Palestine How to cite this paper: Abd Rabou, A.N. Abstract (2020) How Is the COVID-19 Outbreak Affecting Wildlife around the World? Open The COVID-19 is the infectious disease caused by the most recently discov- Journal of Ecology, 10, 497-517. ered coronavirus at an animal market in Wuhan, China. Many wildlife spe- https://doi.org/10.4236/oje.2020.108032 cies have been suggested as possible intermediate sources for the transmission Received: June 2, 2020 of COVID-19 virus from bats to humans. The quick transmission of COVID-19 Accepted: August 1, 2020 outbreak has imposed quarantine measures across the world, and as a result, Published: August 4, 2020 most of the world’s towns and cities fell silent under lockdowns. The current Copyright © 2020 by author(s) and study comes to investigate the ways by which the COVID-19 outbreak affects Scientific Research Publishing Inc. wildlife globally. Hundreds of internet sites and scientific reports have been This work is licensed under the Creative reviewed to satisfy the needs of the study. Stories of seeing wild animals Commons Attribution International roaming the quiet, deserted streets and cities during the COVID-19 outbreak License (CC BY 4.0). http://creativecommons.org/licenses/by/4.0/ have been posted in the media and social media. -
Controlled Sampling of Ribosomally Active Protistan Diversity in Sediment-Surface Layers Identifies Putative Players in the Marine Carbon Sink
The ISME Journal (2020) 14:984–998 https://doi.org/10.1038/s41396-019-0581-y ARTICLE Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink 1,2 1 1 3 3 Raquel Rodríguez-Martínez ● Guy Leonard ● David S. Milner ● Sebastian Sudek ● Mike Conway ● 1 1 4,5 6 7 Karen Moore ● Theresa Hudson ● Frédéric Mahé ● Patrick J. Keeling ● Alyson E. Santoro ● 3,8 1,9 Alexandra Z. Worden ● Thomas A. Richards Received: 6 October 2019 / Revised: 4 December 2019 / Accepted: 17 December 2019 / Published online: 9 January 2020 © The Author(s) 2020. This article is published with open access Abstract Marine sediments are one of the largest carbon reservoir on Earth, yet the microbial communities, especially the eukaryotes, that drive these ecosystems are poorly characterised. Here, we report implementation of a sampling system that enables injection of reagents into sediments at depth, allowing for preservation of RNA in situ. Using the RNA templates recovered, we investigate the ‘ribosomally active’ eukaryotic diversity present in sediments close to the water/sediment interface. We 1234567890();,: 1234567890();,: demonstrate that in situ preservation leads to recovery of a significantly altered community profile. Using SSU rRNA amplicon sequencing, we investigated the community structure in these environments, demonstrating a wide diversity and high relative abundance of stramenopiles and alveolates, specifically: Bacillariophyta (diatoms), labyrinthulomycetes and ciliates. The identification of abundant diatom rRNA molecules is consistent with microscopy-based studies, but demonstrates that these algae can also be exported to the sediment as active cells as opposed to dead forms. -
A 13-Day Wildlife Safari To
Tanzania Safari March 4–17, 2019 with Mark Faherty Optional Extension to Kenya: March 17–22, 2019 Wildlife Crossing, Yellow-billed Storks ©Classic Escapes; Pool, © Tarangire Safari Lodge Tanzania/Kenya, Mar 4–22, 2019 with Mark Faherty Tour Overview The greatest wildlife spectacle on earth! Even if you have been there before, it “never gets old.” Our tour includes world-class birding and abundant wildlife views of the big mammals: elephant, Giraffe, zebra, African Lion, Leopard, and Cheetah in the famous national parks and of Arusha, Tarangire, Lake Manyara, Ngorongoro (conservation area), and, of course, the Serengeti. Arusha National Park is a small but popular park with great birding and extinct volcanoes covered in thick forest. Tarangire National Park is famous for the many baobab trees and high elephant populations. Lake Manyara National Park is a comparatively compact area nestled beneath the cliffs of the Great Rift Valley with spring-fed forests, thick acacia bush, and a soda lake, which, at times, holds a large variety of waterbirds including flamingos, ibises, storks, and ducks. Ngorongoro is the largest unbroken volcanic caldera in the world, but also famous for the grasslands and lakes of the crater floor, where we may find the endangered Black Rhinoceros. The main tour ends in the Serengeti. A vast unspoiled, rolling savannah and woodlands, which hosts the most spectacular concentration of animals during migration and calving. Over one million Blue Wildebeests (along with hundreds of thousands of Thomson’s Gazelles and Common Zebras can be found in the huge park during February- March. A moderately paced tour with good-to-excellent accommodations (in lodges as well as tents). -
Build-A-Bird
Sedgwick Museum of Earth Sciences BUILD-A-BIRD WHAT IS BUILD-A-BIRD? HOW DOES BUILD-A- Build-a-bird is a fun crafts activity to help BIRD WORK? people learn all about different types of In the HOW TO document you will birds. The aim is to teach you how different find a worksheet and some dif- birds are adapted to different environments. ferent bird templates to cut out An adaptation is when part of the body be- and stick onto the worksheet. comes specialised for a certain function that You can cut out the head, body, means the animal has a better chance of sur- wings and legs of each of these vival in a particular environment. You have templates, then combine them in the chance to build your own bird with a any way you wish! combination of adaptations that you choose! BIRD ADAPTATIONS We have prepared some information sheets below about eight different types of birds. Most or all of these should be familiar to you. You can learn about the adaptations that different types of birds have and what environments they live in. The environment they live in determines what kinds of adaptations they have. Use these information sheets to decide what your own build-a-bird will look like. Be creative! ENVIRONMENTS Once you’ve built your bird, think about the adaptations it has and Build a bird how they relate to its lifestyle and where it yourself! lives. What food might it eat? How does it move around? Can it fly, swim or run? Lizzy Steell, Albert Chen & Daniel Field Sedgwick Museum of Earth Sciences BUILD-A-BIRD: GROUND BIRDS BILL Many ground birds have a gently curved bill (beak) they may use ENVIRONMENT to peck at the ground, eating a Ground birds may spend most diet of plants, seeds and insects. -
Horizontal Gene Transfer Facilitated the Evolution of Plant Parasitic Mechanisms in the Oomycetes
Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes Thomas A. Richardsa,b,1, Darren M. Soanesa, Meredith D. M. Jonesa,b, Olga Vasievac, Guy Leonarda,b, Konrad Paszkiewicza, Peter G. Fosterb, Neil Hallc, and Nicholas J. Talbota aBiosciences, University of Exeter, Exeter EX4 4QD, United Kingdom; bDepartment of Zoology, Natural History Museum, London SW7 5BD, United Kingdom; and cSchool of Biological Sciences, University of Liverpool, Liverpool L69 7ZB, United Kingdom Edited by W. Ford Doolittle, Dalhousie University, Halifax, Canada, and approved July 27, 2011 (received for review March 31, 2011) Horizontal gene transfer (HGT) can radically alter the genomes of ramorum, for example, whereas the Irish potato famine of the microorganisms, providing the capacity to adapt to new lifestyles, 19th century was caused by the late blight parasite Phytophthora environments, and hosts. However, the extent of HGT between infestans. Important crop diseases caused by fungi include the eukaryotes is unclear. Using whole-genome, gene-by-gene phylo- devastating rice blast disease caused by M. oryzae and the rusts, genetic analysis we demonstrate an extensive pattern of cross- smuts, and mildews that affect wheat, barley, and maize. In this kingdom HGT between fungi and oomycetes. Comparative study we report that HGT between fungi and oomycetes has genomics, including the de novo genome sequence of Hyphochy- occurred to a far greater degree than hitherto recognized (19). trium catenoides, a free-living sister of the oomycetes, shows that Our previous analysis suggested four strongly supported cases of these transfers largely converge within the radiation of oomycetes HGT, but by using a whole-genome, gene-by-gene phylogenetic that colonize plant tissues. -
Seven Gene Phylogeny of Heterokonts
ARTICLE IN PRESS Protist, Vol. 160, 191—204, May 2009 http://www.elsevier.de/protis Published online date 9 February 2009 ORIGINAL PAPER Seven Gene Phylogeny of Heterokonts Ingvild Riisberga,d,1, Russell J.S. Orrb,d,1, Ragnhild Klugeb,c,2, Kamran Shalchian-Tabrizid, Holly A. Bowerse, Vishwanath Patilb,c, Bente Edvardsena,d, and Kjetill S. Jakobsenb,d,3 aMarine Biology, Department of Biology, University of Oslo, P.O. Box 1066, Blindern, NO-0316 Oslo, Norway bCentre for Ecological and Evolutionary Synthesis (CEES),Department of Biology, University of Oslo, P.O. Box 1066, Blindern, NO-0316 Oslo, Norway cDepartment of Plant and Environmental Sciences, P.O. Box 5003, The Norwegian University of Life Sciences, N-1432, A˚ s, Norway dMicrobial Evolution Research Group (MERG), Department of Biology, University of Oslo, P.O. Box 1066, Blindern, NO-0316, Oslo, Norway eCenter of Marine Biotechnology, 701 East Pratt Street, Baltimore, MD 21202, USA Submitted May 23, 2008; Accepted November 15, 2008 Monitoring Editor: Mitchell L. Sogin Nucleotide ssu and lsu rDNA sequences of all major lineages of autotrophic (Ochrophyta) and heterotrophic (Bigyra and Pseudofungi) heterokonts were combined with amino acid sequences from four protein-coding genes (actin, b-tubulin, cox1 and hsp90) in a multigene approach for resolving the relationship between heterokont lineages. Applying these multigene data in Bayesian and maximum likelihood analyses improved the heterokont tree compared to previous rDNA analyses by placing all plastid-lacking heterotrophic heterokonts sister to Ochrophyta with robust support, and divided the heterotrophic heterokonts into the previously recognized phyla, Bigyra and Pseudofungi. Our trees identified the heterotrophic heterokonts Bicosoecida, Blastocystis and Labyrinthulida (Bigyra) as the earliest diverging lineages. -
Namibia Birding and Nature Tour September 13-25, 2014 Tour Species List
P.O. Box 16545 Portal, AZ. 85632 PH: (866) 900-1146 www.caligo.com [email protected] [email protected] www.naturalistjourneys.com Naturalist Journeys: Namibia Birding and Nature Tour September 13-25, 2014 Tour Species List Dalton Gibbs of Birding Africa and Peg Abbott of Naturalist Journeys, with five participants: Andrea, Alex, Ty, Mimi, and Penny BIRDS Common Ostrich – Seen regularly in the first days of the trip in open terrain, strutting through just amazing landscapes with colorful escarpments amid seas of arid grassland. Numerous at Etosha, we could view their dominance behaviors and also some courting display, some of the males were starting to get very red necks and legs as they came into prime condition. Helmeted Guineafowl – Widespread and regularly seen throughout the journeys. The most tame were at Weltevrede where they posed on the gate, strutted about the farm and serenaded us at the end of each day. They came into the waterholes of Etosha in large groups, 20-50 at a time, vocal and jumpy, always alert. One by the roadside on the last day made this an everyday species for the trip. Red-billed Spurfowl – first seen in a wash as we approached Remhoogte Pass, coming off the escarpment onto the coastal plain on the first day from Windhoek. Widespread – seen on seven days of the trip, in all but our most arid locations. Saw some on the Dik Dik Drive of Etosha. And at the Waterberg they were abundant, at dawn their calls were deafening! Swainson’s Spurfowl – recognized by different calling, Peg spotted a family group as we entered the fort area of Namutoni in Etosha, active at the road margin.