A Partial Ordering of Knots Through Diagrammatic Unknotting
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The Borromean Rings: a Video About the New IMU Logo
The Borromean Rings: A Video about the New IMU Logo Charles Gunn and John M. Sullivan∗ Technische Universitat¨ Berlin Institut fur¨ Mathematik, MA 3–2 Str. des 17. Juni 136 10623 Berlin, Germany Email: {gunn,sullivan}@math.tu-berlin.de Abstract This paper describes our video The Borromean Rings: A new logo for the IMU, which was premiered at the opening ceremony of the last International Congress. The video explains some of the mathematics behind the logo of the In- ternational Mathematical Union, which is based on the tight configuration of the Borromean rings. This configuration has pyritohedral symmetry, so the video includes an exploration of this interesting symmetry group. Figure 1: The IMU logo depicts the tight config- Figure 2: A typical diagram for the Borromean uration of the Borromean rings. Its symmetry is rings uses three round circles, with alternating pyritohedral, as defined in Section 3. crossings. In the upper corners are diagrams for two other three-component Brunnian links. 1 The IMU Logo and the Borromean Rings In 2004, the International Mathematical Union (IMU), which had never had a logo, announced a competition to design one. The winning entry, shown in Figure 1, was designed by one of us (Sullivan) with help from Nancy Wrinkle. It depicts the Borromean rings, not in the usual diagram (Figure 2) but instead in their tight configuration, the shape they have when tied tight in thick rope. This IMU logo was unveiled at the opening ceremony of the International Congress of Mathematicians (ICM 2006) in Madrid. We were invited to produce a short video [10] about some of the mathematics behind the logo; it was shown at the opening and closing ceremonies, and can be viewed at www.isama.org/jms/Videos/imu/. -
Conservation of Complex Knotting and Slipknotting Patterns in Proteins
Conservation of complex knotting and PNAS PLUS slipknotting patterns in proteins Joanna I. Sułkowskaa,1,2, Eric J. Rawdonb,1, Kenneth C. Millettc, Jose N. Onuchicd,2, and Andrzej Stasiake aCenter for Theoretical Biological Physics, University of California at San Diego, La Jolla, CA 92037; bDepartment of Mathematics, University of St. Thomas, Saint Paul, MN 55105; cDepartment of Mathematics, University of California, Santa Barbara, CA 93106; dCenter for Theoretical Biological Physics , Rice University, Houston, TX 77005; and eCenter for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland Edited by* Michael S. Waterman, University of Southern California, Los Angeles, CA, and approved May 4, 2012 (received for review April 17, 2012) While analyzing all available protein structures for the presence of ers fixed configurations, in this case proteins in their native folded knots and slipknots, we detected a strict conservation of complex structures. Then they may be treated as frozen and thus unable to knotting patterns within and between several protein families undergo any deformation. despite their large sequence divergence. Because protein folding Several papers have described various interesting closure pathways leading to knotted native protein structures are slower procedures to capture the knot type of the native structure of and less efficient than those leading to unknotted proteins with a protein or a subchain of a closed chain (1, 3, 29–33). In general, similar size and sequence, the strict conservation of the knotting the strategy is to ensure that the closure procedure does not affect patterns indicates an important physiological role of knots and slip- the inherent entanglement in the analyzed protein chain or sub- knots in these proteins. -
Complete Invariant Graphs of Alternating Knots
Complete invariant graphs of alternating knots Christian Soulié First submission: April 2004 (revision 1) Abstract : Chord diagrams and related enlacement graphs of alternating knots are enhanced to obtain complete invariant graphs including chirality detection. Moreover, the equivalence by common enlacement graph is specified and the neighborhood graph is defined for general purpose and for special application to the knots. I - Introduction : Chord diagrams are enhanced to integrate the state sum of all flype moves and then produce an invariant graph for alternating knots. By adding local writhe attribute to these graphs, chiral types of knots are distinguished. The resulting chord-weighted graph is a complete invariant of alternating knots. Condensed chord diagrams and condensed enlacement graphs are introduced and a new type of graph of general purpose is defined : the neighborhood graph. The enlacement graph is enriched by local writhe and chord orientation. Hence this enhanced graph distinguishes mutant alternating knots. As invariant by flype it is also invariant for all alternating knots. The equivalence class of knots with the same enlacement graph is fully specified and extended mutation with flype of tangles is defined. On this way, two enhanced graphs are proposed as complete invariants of alternating knots. I - Introduction II - Definitions and condensed graphs II-1 Knots II-2 Sign of crossing points II-3 Chord diagrams II-4 Enlacement graphs II-5 Condensed graphs III - Realizability and construction III - 1 Realizability -
Ribbon Concordances and Doubly Slice Knots
Ribbon concordances and doubly slice knots Ruppik, Benjamin Matthias Advisors: Arunima Ray & Peter Teichner The knot concordance group Glossary Definition 1. A knot K ⊂ S3 is called (topologically/smoothly) slice if it arises as the equatorial slice of a (locally flat/smooth) embedding of a 2-sphere in S4. – Abelian invariants: Algebraic invari- Proposition. Under the equivalence relation “K ∼ J iff K#(−J) is slice”, the commutative monoid ants extracted from the Alexander module Z 3 −1 A (K) = H1( \ K; [t, t ]) (i.e. from the n isotopy classes of o connected sum S Z K := 1 3 , # := oriented knots S ,→S of knots homology of the universal abelian cover of the becomes a group C := K/ ∼, the knot concordance group. knot complement). The neutral element is given by the (equivalence class) of the unknot, and the inverse of [K] is [rK], i.e. the – Blanchfield linking form: Sesquilin- mirror image of K with opposite orientation. ear form on the Alexander module ( ) sm top Bl: AZ(K) × AZ(K) → Q Z , the definition Remark. We should be careful and distinguish the smooth C and topologically locally flat C version, Z[Z] because there is a huge difference between those: Ker(Csm → Ctop) is infinitely generated! uses that AZ(K) is a Z[Z]-torsion module. – Levine-Tristram-signature: For ω ∈ S1, Some classical structure results: take the signature of the Hermitian matrix sm top ∼ ∞ ∞ ∞ T – There are surjective homomorphisms C → C → AC, where AC = Z ⊕ Z2 ⊕ Z4 is Levine’s algebraic (1 − ω)V + (1 − ω)V , where V is a Seifert concordance group. -
THE JONES SLOPES of a KNOT Contents 1. Introduction 1 1.1. The
THE JONES SLOPES OF A KNOT STAVROS GAROUFALIDIS Abstract. The paper introduces the Slope Conjecture which relates the degree of the Jones polynomial of a knot and its parallels with the slopes of incompressible surfaces in the knot complement. More precisely, we introduce two knot invariants, the Jones slopes (a finite set of rational numbers) and the Jones period (a natural number) of a knot in 3-space. We formulate a number of conjectures for these invariants and verify them by explicit computations for the class of alternating knots, the knots with at most 9 crossings, the torus knots and the (−2, 3,n) pretzel knots. Contents 1. Introduction 1 1.1. The degree of the Jones polynomial and incompressible surfaces 1 1.2. The degree of the colored Jones function is a quadratic quasi-polynomial 3 1.3. q-holonomic functions and quadratic quasi-polynomials 3 1.4. The Jones slopes and the Jones period of a knot 4 1.5. The symmetrized Jones slopes and the signature of a knot 5 1.6. Plan of the proof 7 2. Future directions 7 3. The Jones slopes and the Jones period of an alternating knot 8 4. Computing the Jones slopes and the Jones period of a knot 10 4.1. Some lemmas on quasi-polynomials 10 4.2. Computing the colored Jones function of a knot 11 4.3. Guessing the colored Jones function of a knot 11 4.4. A summary of non-alternating knots 12 4.5. The 8-crossing non-alternating knots 13 4.6. -
A Knot-Vice's Guide to Untangling Knot Theory, Undergraduate
A Knot-vice’s Guide to Untangling Knot Theory Rebecca Hardenbrook Department of Mathematics University of Utah Rebecca Hardenbrook A Knot-vice’s Guide to Untangling Knot Theory 1 / 26 What is Not a Knot? Rebecca Hardenbrook A Knot-vice’s Guide to Untangling Knot Theory 2 / 26 What is a Knot? 2 A knot is an embedding of the circle in the Euclidean plane (R ). 3 Also defined as a closed, non-self-intersecting curve in R . 2 Represented by knot projections in R . Rebecca Hardenbrook A Knot-vice’s Guide to Untangling Knot Theory 3 / 26 Why Knots? Late nineteenth century chemists and physicists believed that a substance known as aether existed throughout all of space. Could knots represent the elements? Rebecca Hardenbrook A Knot-vice’s Guide to Untangling Knot Theory 4 / 26 Why Knots? Rebecca Hardenbrook A Knot-vice’s Guide to Untangling Knot Theory 5 / 26 Why Knots? Unfortunately, no. Nevertheless, mathematicians continued to study knots! Rebecca Hardenbrook A Knot-vice’s Guide to Untangling Knot Theory 6 / 26 Current Applications Natural knotting in DNA molecules (1980s). Credit: K. Kimura et al. (1999) Rebecca Hardenbrook A Knot-vice’s Guide to Untangling Knot Theory 7 / 26 Current Applications Chemical synthesis of knotted molecules – Dietrich-Buchecker and Sauvage (1988). Credit: J. Guo et al. (2010) Rebecca Hardenbrook A Knot-vice’s Guide to Untangling Knot Theory 8 / 26 Current Applications Use of lattice models, e.g. the Ising model (1925), and planar projection of knots to find a knot invariant via statistical mechanics. Credit: D. Chicherin, V.P. -
Notes on the Self-Linking Number
NOTES ON THE SELF-LINKING NUMBER ALBERTO S. CATTANEO The aim of this note is to review the results of [4, 8, 9] in view of integrals over configuration spaces and also to discuss a generalization to other 3-manifolds. Recall that the linking number of two non-intersecting curves in R3 can be expressed as the integral (Gauss formula) of a 2-form on the Cartesian product of the curves. It also makes sense to integrate over the product of an embedded curve with itself and define its self-linking number this way. This is not an invariant as it changes continuously with deformations of the embedding; in addition, it has a jump when- ever a crossing is switched. There exists another function, the integrated torsion, which has op- posite variation under continuous deformations but is defined on the whole space of immersions (and consequently has no discontinuities at a crossing change), but depends on a choice of framing. The sum of the self-linking number and the integrated torsion is therefore an invariant of embedded curves with framings and turns out simply to be the linking number between the given embedding and its small displacement by the framing. This also allows one to compute the jump at a crossing change. The main application is that the self-linking number or the integrated torsion may be added to the integral expressions of [3] to make them into knot invariants. We also discuss on the geometrical meaning of the integrated torsion. 1. The trivial case Let us start recalling the case of embeddings and immersions in R3. -
CROSSING CHANGES and MINIMAL DIAGRAMS the Unknotting
CROSSING CHANGES AND MINIMAL DIAGRAMS ISABEL K. DARCY The unknotting number of a knot is the minimal number of crossing changes needed to convert the knot into the unknot where the minimum is taken over all possible diagrams of the knot. For example, the minimal diagram of the knot 108 requires 3 crossing changes in order to change it to the unknot. Thus, by looking only at the minimal diagram of 108, it is clear that u(108) ≤ 3 (figure 1). Nakanishi [5] and Bleiler [2] proved that u(108) = 2. They found a non-minimal diagram of the knot 108 in which two crossing changes suffice to obtain the unknot (figure 2). Lower bounds on unknotting number can be found by looking at how knot invariants are affected by crossing changes. Nakanishi [5] and Bleiler [2] used signature to prove that u(108)=2. Figure 1. Minimal dia- Figure 2. A non-minimal dia- gram of knot 108 gram of knot 108 Bernhard [1] noticed that one can determine that u(108) = 2 by using a sequence of crossing changes within minimal diagrams and ambient isotopies as shown in figure. A crossing change within the minimal diagram of 108 results in the knot 62. We then use an ambient isotopy to change this non-minimal diagram of 62 to a minimal diagram. The unknot can then be obtained by changing one crossing within the minimal diagram of 62. Bernhard hypothesized that the unknotting number of a knot could be determined by only looking at minimal diagrams by using ambient isotopies between crossing changes. -
A Symmetry Motivated Link Table
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 15 August 2018 doi:10.20944/preprints201808.0265.v1 Peer-reviewed version available at Symmetry 2018, 10, 604; doi:10.3390/sym10110604 Article A Symmetry Motivated Link Table Shawn Witte1, Michelle Flanner2 and Mariel Vazquez1,2 1 UC Davis Mathematics 2 UC Davis Microbiology and Molecular Genetics * Correspondence: [email protected] Abstract: Proper identification of oriented knots and 2-component links requires a precise link 1 nomenclature. Motivated by questions arising in DNA topology, this study aims to produce a 2 nomenclature unambiguous with respect to link symmetries. For knots, this involves distinguishing 3 a knot type from its mirror image. In the case of 2-component links, there are up to sixteen possible 4 symmetry types for each topology. The study revisits the methods previously used to disambiguate 5 chiral knots and extends them to oriented 2-component links with up to nine crossings. Monte Carlo 6 simulations are used to report on writhe, a geometric indicator of chirality. There are ninety-two 7 prime 2-component links with up to nine crossings. Guided by geometrical data, linking number and 8 the symmetry groups of 2-component links, a canonical link diagram for each link type is proposed. 9 2 2 2 2 2 2 All diagrams but six were unambiguously chosen (815, 95, 934, 935, 939, and 941). We include complete 10 tables for prime knots with up to ten crossings and prime links with up to nine crossings. We also 11 prove a result on the behavior of the writhe under local lattice moves. -
Gauss' Linking Number Revisited
October 18, 2011 9:17 WSPC/S0218-2165 134-JKTR S0218216511009261 Journal of Knot Theory and Its Ramifications Vol. 20, No. 10 (2011) 1325–1343 c World Scientific Publishing Company DOI: 10.1142/S0218216511009261 GAUSS’ LINKING NUMBER REVISITED RENZO L. RICCA∗ Department of Mathematics and Applications, University of Milano-Bicocca, Via Cozzi 53, 20125 Milano, Italy [email protected] BERNARDO NIPOTI Department of Mathematics “F. Casorati”, University of Pavia, Via Ferrata 1, 27100 Pavia, Italy Accepted 6 August 2010 ABSTRACT In this paper we provide a mathematical reconstruction of what might have been Gauss’ own derivation of the linking number of 1833, providing also an alternative, explicit proof of its modern interpretation in terms of degree, signed crossings and inter- section number. The reconstruction presented here is entirely based on an accurate study of Gauss’ own work on terrestrial magnetism. A brief discussion of a possibly indepen- dent derivation made by Maxwell in 1867 completes this reconstruction. Since the linking number interpretations in terms of degree, signed crossings and intersection index play such an important role in modern mathematical physics, we offer a direct proof of their equivalence. Explicit examples of its interpretation in terms of oriented area are also provided. Keywords: Linking number; potential; degree; signed crossings; intersection number; oriented area. Mathematics Subject Classification 2010: 57M25, 57M27, 78A25 1. Introduction The concept of linking number was introduced by Gauss in a brief note on his diary in 1833 (see Sec. 2 below), but no proof was given, neither of its derivation, nor of its topological meaning. Its derivation remained indeed a mystery. -
Tait's Flyping Conjecture for 4-Regular Graphs
CORE Metadata, citation and similar papers at core.ac.uk Provided by Elsevier - Publisher Connector Journal of Combinatorial Theory, Series B 95 (2005) 318–332 www.elsevier.com/locate/jctb Tait’s flyping conjecture for 4-regular graphs Jörg Sawollek Fachbereich Mathematik, Universität Dortmund, 44221 Dortmund, Germany Received 8 July 1998 Available online 19 July 2005 Abstract Tait’s flyping conjecture, stating that two reduced, alternating, prime link diagrams can be connected by a finite sequence of flypes, is extended to reduced, alternating, prime diagrams of 4-regular graphs in S3. The proof of this version of the flyping conjecture is based on the fact that the equivalence classes with respect to ambient isotopy and rigid vertex isotopy of graph embeddings are identical on the class of diagrams considered. © 2005 Elsevier Inc. All rights reserved. Keywords: Knotted graph; Alternating diagram; Flyping conjecture 0. Introduction Very early in the history of knot theory attention has been paid to alternating diagrams of knots and links. At the end of the 19th century Tait [21] stated several famous conjectures on alternating link diagrams that could not be verified for about a century. The conjectures concerning minimal crossing numbers of reduced, alternating link diagrams [15, Theorems A, B] have been proved independently by Thistlethwaite [22], Murasugi [15], and Kauffman [6]. Tait’s flyping conjecture, claiming that two reduced, alternating, prime diagrams of a given link can be connected by a finite sequence of so-called flypes (see [4, p. 311] for Tait’s original terminology), has been shown by Menasco and Thistlethwaite [14], and for a special case, namely, for well-connected diagrams, also by Schrijver [20]. -
Knot Theory: an Introduction
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