Lost & Found Fungi Project Report, November-December 2015
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Morinagadepsin, a Depsipeptide from the Fungus Morinagamyces Vermicularis Gen. Et Comb. Nov
microorganisms Article Morinagadepsin, a Depsipeptide from the Fungus Morinagamyces vermicularis gen. et comb. nov. Karen Harms 1,2 , Frank Surup 1,2,* , Marc Stadler 1,2 , Alberto Miguel Stchigel 3 and Yasmina Marin-Felix 1,* 1 Department Microbial Drugs, Helmholtz Centre for Infection Research, Inhoffenstrasse 7, 38124 Braunschweig, Germany; [email protected] (K.H.); [email protected] (M.S.) 2 Institute of Microbiology, Technische Universität Braunschweig, Spielmannstrasse 7, 38106 Braunschweig, Germany 3 Mycology Unit, Medical School and IISPV, Universitat Rovira i Virgili, C/ Sant Llorenç 21, 43201 Reus, Tarragona, Spain; [email protected] * Correspondence: [email protected] (F.S.); [email protected] (Y.M.-F.) Abstract: The new genus Morinagamyces is introduced herein to accommodate the fungus Apiosordaria vermicularis as inferred from a phylogenetic study based on sequences of the internal transcribed spacer region (ITS), the nuclear rDNA large subunit (LSU), and partial fragments of ribosomal polymerase II subunit 2 (rpb2) and β-tubulin (tub2) genes. Morinagamyces vermicularis was analyzed for the production of secondary metabolites, resulting in the isolation of a new depsipeptide named morinagadepsin (1), and the already known chaetone B (3). While the planar structure of 1 was elucidated by extensive 1D- and 2D-NMR analysis and high-resolution mass spectrometry, the absolute configuration of the building blocks Ala, Val, and Leu was determined as -L by Marfey’s method. The configuration of the 3-hydroxy-2-methyldecanyl unit was assigned as 22R,23R by Citation: Harms, K.; Surup, F.; Stadler, M.; Stchigel, A.M.; J-based configuration analysis and Mosher’s method after partial hydrolysis of the morinagadepsin Marin-Felix, Y. -
An Annotated Check-List of Ascomycota Reported from Soil and Other Terricolous Substrates in Egypt A
Journal of Basic & Applied Mycology 2 (2011): 1-27 1 © 2010 by The Society of Basic & Applied Mycology (EGYPT) An annotated check-list of Ascomycota reported from soil and other terricolous substrates in Egypt A. F. Moustafa* & A. M. Abdel – Azeem Department of Botany, Faculty of Science, University of Suez *Corresponding author: e-mail: Canal, Ismailia 41522, Egypt [email protected] Received 26/6/2010, Accepted 6/4 /2011 ____________________________________________________________________________________________________ Abstract: By screening of available sources of information, it was possible to figure out a range of 310 taxa that could be representing Egyptian Ascomycota up to the present time. In this treatment, concern was given to ascomycetous fungi of almost all terricolous substrates while phytopathogenic and aquatic forms are not included. According to the scheme proposed by Kirk et al. (2008), reported taxa in Egypt belonged to 88 genera in 31 families, and 11 orders. In view of this scheme, very few numbers of taxa remained without certain taxonomic position (incertae sedis). It is also worthy to be mentioned that among species included in the list, twenty-eight are introduced to the ascosporic mycobiota as novel taxa based on type materials collected from Egyptian habitats. The list includes also 19 species which are considered new records to the general mycobiota of Egypt. When species richness and substrate preference, as important ecological parameters, are considered, it has been noticed that Egyptian Ascomycota shows some interesting features noteworthy to be mentioned. At the substrate level, clay soils, came first by hosting a range of 108 taxa followed by desert soils (60 taxa). -
Molecular Systematics of the Sordariales: the Order and the Family Lasiosphaeriaceae Redefined
Mycologia, 96(2), 2004, pp. 368±387. q 2004 by The Mycological Society of America, Lawrence, KS 66044-8897 Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae rede®ned Sabine M. Huhndorf1 other families outside the Sordariales and 22 addi- Botany Department, The Field Museum, 1400 S. Lake tional genera with differing morphologies subse- Shore Drive, Chicago, Illinois 60605-2496 quently are transferred out of the order. Two new Andrew N. Miller orders, Coniochaetales and Chaetosphaeriales, are recognized for the families Coniochaetaceae and Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 Chaetosphaeriaceae respectively. The Boliniaceae is University of Illinois at Chicago, Department of accepted in the Boliniales, and the Nitschkiaceae is Biological Sciences, Chicago, Illinois 60607-7060 accepted in the Coronophorales. Annulatascaceae and Cephalothecaceae are placed in Sordariomyce- Fernando A. FernaÂndez tidae inc. sed., and Batistiaceae is placed in the Euas- Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 comycetes inc. sed. Key words: Annulatascaceae, Batistiaceae, Bolini- aceae, Catabotrydaceae, Cephalothecaceae, Ceratos- Abstract: The Sordariales is a taxonomically diverse tomataceae, Chaetomiaceae, Coniochaetaceae, Hel- group that has contained from seven to 14 families minthosphaeriaceae, LSU nrDNA, Nitschkiaceae, in recent years. The largest family is the Lasiosphaer- Sordariaceae iaceae, which has contained between 33 and 53 gen- era, depending on the chosen classi®cation. To de- termine the af®nities and taxonomic placement of INTRODUCTION the Lasiosphaeriaceae and other families in the Sor- The Sordariales is one of the most taxonomically di- dariales, taxa representing every family in the Sor- verse groups within the Class Sordariomycetes (Phy- dariales and most of the genera in the Lasiosphaeri- lum Ascomycota, Subphylum Pezizomycotina, ®de aceae were targeted for phylogenetic analysis using Eriksson et al 2001). -
Molecular Systematics of Zopfiella and Allied Genera
mycological research 110 (2006) 359– 368 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres Molecular Systematics of Zopfiella and allied genera: evidence from multi-gene sequence analyses Lei CAI*, Rajesh JEEWON, Kevin D. HYDE Centre for Research in Fungal Diversity, Department of Ecology and Biodiversity, The University of Hong Kong, Pokfulam Rd, Hong Kong SAR, PR China article info abstract Article history: This study aims to reveal the phylogenetic relationships of Zopfiella and allied genera in the Received 22 June 2005 Sordariales. Multiple gene sequences (partial 28 S rDNA, ITS/5.8 S rDNA and partial b-tubu- Received in revised form lin) were analysed using MP and Bayesian analyses. Analyses of different gene datasets 10 December 2005 were performed individually and then combined to infer phylogenies. Phylogenetic analy- Accepted 4 January 2006 ses show that currently recognised Zopfiella species are polyphyletic. Based on sequence Published online 20 March 2006 analyses and morphology, it appears that Zopfiella should be restricted to species having as- Corresponding Editor: cospores with a septum in the dark cell. Our molecular analysis also shows that Zopfiella David L. Hawksworth should be placed in Lasiosphaeriaceae rather than Chaetomiaceae. Cercophora and Podospora are also polyphyletic, which is in agreement with previous studies. Our analyses show Keywords: that species possessing a Cladorrhinum anamorph are phylogenetically closely related. In Ascomycota addition, there are several strongly supported clades, characterised by species possessing Lasiosphaeriaceae divergent morphological characters. It is difficult to predict which characters are phyloge- Molecular phylogenetics netically informative for delimiting these clades. Sordariales ª 2006 The British Mycological Society. -
An Annotated Check-List of Ascomycota Reported from Soil and Other Terricolous Substrates in Egypt A
J ournal of Basic & Applied Mycology 2 (2011): 1-27 © 2010 by The Society of Basic & Applied Mycology (EGYPT) An annotated check-list of Ascomycota reported from soil and other terricolous substrates in Egypt A. F. Moustafa* & A. M. Abdel - Azeem Depar tment of Botany, Faculty of Science, Univer sity of Suez *Corresponding author: e-mail: Canal, lsmailia 4 1522, Egypt Moustafa_ [email protected] Received 26/6/20 I 0, Accepted 6/4 /2011 Abstract By screening of available sources of intormation, it was possible to tigure out a range of 310 taxa that could be representing Egyptian Ascomycota up to the present time. In this treatment. concern was given to ascomycetous fungi of almost all terricolous substrates while phytopathogenic and aquatic torms are not included. According to the scheme proposed by Kirk et a!. (2008). reported taxa in Egypt belonged to 88 genera in 31 families, and l l orders. In view of this scheme. very few numbers of taxa remained without certain taxonomic position (im:ertae sedis). It is also worthy to be mentioned that among species included in the list. twenty-eight are introduced to the ascosporic mycobiota as novel taxa based on type materials collected ti·om Egyptian habitats. The list includes also 19 species which are considered new records to the general mycobiota of Egypt. When species richness and substrate preference, as impotiant ecological parameters. are considered. it has been noticed that Egyptian Ascomycota shows some interesting features noteworthy to be mentioned. At the substrate level, clay soils. came first by hosting a range of I 08 taxa to Ilowed by deseti soils (60 taxa). -
Precipitation Patterns and Fungal Community Succession in a Seasonally Dry Secondary Tropical Savanna Sara R
University of New Mexico UNM Digital Repository Biology ETDs Electronic Theses and Dissertations Spring 5-13-2017 Precipitation Patterns and Fungal Community Succession in a Seasonally Dry Secondary Tropical Savanna Sara R. Lopez University of New Mexico - Main Campus Follow this and additional works at: https://digitalrepository.unm.edu/biol_etds Part of the Biology Commons, and the Desert Ecology Commons Recommended Citation Lopez, Sara R.. "Precipitation Patterns and Fungal Community Succession in a Seasonally Dry Secondary Tropical Savanna." (2017). https://digitalrepository.unm.edu/biol_etds/204 This Dissertation is brought to you for free and open access by the Electronic Theses and Dissertations at UNM Digital Repository. It has been accepted for inclusion in Biology ETDs by an authorized administrator of UNM Digital Repository. For more information, please contact [email protected]. Sara R. López-Rodríguez Candidate Biology Department This dissertation is approved, and it is acceptable in quality and form for publication: Approved by the Dissertation Committee: Donald O. Natvig, Chairperson Scott Collins Diana Northup Andrea Porras-Alfaro i PRECIPITATION PATTERNS AND FUNGAL COMMUNITY SUCCESSION IN A SEASONALLY DRY SECONDARY TROPICAL SAVANNA by SARA R. LÓPEZ-RODRÍGUEZ B.S., Biology, Universidad del valle, 2000 M.Sc., Biology, Universidad de Puerto Rico, 2007 DISSERTATION Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Biology The University of New Mexico Albuquerque, New Mexico May, 2017 ii ACKNOWLEDGMENTS I would like to thank Dr. Donald O. Natvig for his firm guidance and for teaching me that persistence and the correct attitude constitute the key for success in a scientific career. -
Tássio Brito De Oliveira Fungos Na Compostagem Da
UNIVERSIDADE ESTADUAL PAULISTA “JÚLIO DE MESQUITA FILHO” unesp INSTITUTO DE BIOCIÊNCIAS – RIO CLARO PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS (ÁREA: MICROBIOLOGIA APLICADA) TÁSSIO BRITO DE OLIVEIRA FUNGOS NA COMPOSTAGEM DA TORTA DE FILTRO: DIVERSIDADE, GENÔMICA E POTENCIAL BIOTECNOLÓGICO Tese apresentada ao Instituto de Biociências, do Câmpus de Rio Claro, Universidade Estadual Paulista, como parte dos requisitos para obtenção do título de Doutor em Ciências Biológicas (Área: Microbiologia Aplicada). Rio Claro Dezembro – 2016 TÁSSIO BRITO DE OLIVEIRA FUNGOS NA COMPOSTAGEM DA TORTA DE FILTRO: DIVERSIDADE, GENÔMICA E POTENCIAL BIOTECNOLÓGICO Tese apresentada ao Instituto de Biociências, do Câmpus de Rio Claro, Universidade Estadual Paulista, como parte dos requisitos para obtenção do título de Doutor em Ciências Biológicas (Área: Microbiologia Aplicada). Orientador: Prof. Dr. André Rodrigues Co-orientadora: Profª. Drª. Eleni Gomes Rio Claro Dezembro – 2016 589.2 Oliveira, Tássio Brito de O48f Fungos na compostagem da torta de filtro : diversidade, genômica e potencial biotecnológico / Tássio Brito de Oliveira. - Rio Claro, 2016 127 f. : il., figs., gráfs., tabs., fots. Tese (doutorado) - Universidade Estadual Paulista, Instituto de Biociências de Rio Claro Orientador: André Rodrigues Coorientadora: Eleni Gomes 1. Fungos. 2. Pirosequenciamento. 3. Cana-de-açúcar. 4. Enzimas lignocelulolíticas. 5. Tratamento de resíduo. 6. Fungos termofílicos. I. Título. Ficha Catalográfica elaborada pela STATI - Biblioteca da UNESP Campus de Rio Claro/SP AGRADECIMENTOS Ao meu orientador, Dr. André Rodrigues, quem muito admiro pela competência profissional e genialidade, pela oportunidade, dedicação e incentivo à pesquisa durante sua orientação, que me abriu caminhos e diversas colaborações, permitindo meu crescimento profissional e pessoal. À minha co-orientadora, Drª. -
Ascomycota, Fungi)
Fungal Diversity DOI 10.1007/s13225-014-0296-3 Coprophilous contributions to the phylogeny of Lasiosphaeriaceae and allied taxa within Sordariales (Ascomycota, Fungi) Åsa Kruys & Sabine M. Huhndorf & Andrew N. Miller Received: 28 November 2013 /Accepted: 12 July 2014 # School of Science 2014 Abstract The phylogenetic relationships of Keywords Ascomal wall . Ascomycete . β-tubulin . LSU Lasiosphaeriaceae are complicated in that the family is nrDNA . Systematics,Taxonomy paraphyletic and includes Sordariaceae and Chaetomiaceae, as well as several polyphyletic genera. This study focuses on the phylogenetic relationships of the coprophilous genera, Introduction Anopodium, Apodospora, Arnium, Fimetariella and Zygospermella. They are traditionally circumscribed based Sordariales is a large group of microfungi that occur world- on ascospore characters, which have proven homoplasious wide as degraders of dung, wood, plant material, and soil in other genera within the family. Our results based on LSU (Cannon and Kirk 2007). The order includes several well- nrDNA and ß–tubulin sequences distinguish four lineages of known members including species of Chaetomium that are Lasiosphaeriaceae taxa. Anopodium joins the clade of mor- common indoor contaminants associated with high humidity, phologically similar, yellow-pigmented species of and the model organisms Neurospora crassa, Podospora Cercophora and Lasiosphaeria. Apodospora is monophyletic anserina, Sordaria fimicola,andS. macrospora and joins a larger group of taxa with unclear affinities to each -
I Managing with Fire
Managing with fire: effects of recurring prescribed fire on soil and root-associated fungal communities By Alena K Oliver A THESIS submitted in partial fulfillment of the requirements for the degree MASTER OF SCIENCE Division of Biology College of Arts and Sciences KANSAS STATE UNIVERSITY Manhattan, Kansas 2020 Approved by: Major Professor Ari Jumpponen i Copyright ALENA OLIVER 2020 ii Abstract Prescribed fire is a necessary management tool used to reduce fuel loads and to maintain fire-adapted ecosystems over time. Although the effects of fire on vegetation and soil properties are well understood, the long-term impacts of different fire regimes on soil fungi, root-inhabiting and ectomycorrhizal (ECM) fungi remain largely unknown. Previous studies show that high intensity wildfires reduce soil fungal biomass and alter fungal communities, however the effects of repeated low intensity prescribed fires are less understood. Studies described in this thesis took advantage of a long-term (>25 years) fire management regime in southern yellow pine stands in the southeastern United States to analyze the effects of repeated prescribed fires on soil fungi, root-associated and ECM fungal communities. The fire management regimes included five fire treatments varying in season (winter and summer) and interval length (two-year, three-year, six-year, and unburned control) allowing us to address effects of burn season and fire frequency on these fungal communities. We used 454-pyrosequencing to analyze ECM roots to specifically focus on the root-associate fungi and ECM. After a pilot study comparing the use of non- proofreading and proofreading polymerases to generate deep high throughput sequence data on soil fungal communities using Illumina MiSeq technology, proofreading polymerase was chosen to create amplicon libraries to minimize overestimation of community richness and underestimation of community evenness. -
“Fungi Fimicoli Italici”: an Update on the Occurrence of Coprophilous Basidiomycetes and Ascomycetes in Italy with New Records and Descriptions
Mycosphere Additions to “Fungi Fimicoli Italici”: An update on the occurrence of coprophilous Basidiomycetes and Ascomycetes in Italy with new records and descriptions. Doveri F* Via Baciocchi 9, I–57126–Livorno. Doveri F. 2011 – Addition to “Fungi Fimicoli Italici”: An update on the occurrence of coprophilous Basidiomycetes and Ascomycetes in Italy with new records and descriptions. Mycosphere 2(4), 331–427. “Fungi Fimicoli Italici”, the first monograph on coprophilous fungi from Italy, is regarded as the starting point of a survey on Basidiomycetes and Ascomycetes obligatorily or facultatively growing on any kind of dung. All fimicolous species recorded from Italy and described in that work or in subsequent author's papers are listed and their dung sources are mentioned. The occurrence on dung of different genera and species is reported in separate Tables, and their frequency on different types of excrements is discussed and compared with other parts of the world. An update on the families Gymnoascaceae, Microascaceae and Sporormiaceae, and keys to genera of Gymnoascaceae and Microascaceae, and to Italian species of Gymnoascus s.l. and Sporormiella with 8-celled ascospores are provided. Chaetomidium fimeti, C. ancistrocladum, C. murorum, Gymnoascus dankaliensis, G. littoralis, G. ruber, Hypocopra equorum, Iodophanus difformis, Kernia cauquensis, Lophotrichus bartlettii, Orbicula parietina, Pithoascus intermedius, and Sporormiella affinis are first described from Italy. Key words – damp chambers – fimicolous fungi – frequency – keys – natural state – survey Article Information Received 7 March 2011 Accepted 18 April 2011 Published online 14 September 2011 *Corresponding author: Francesco Doveri – e-mail – [email protected] Introduction The present work must be regarded as “Fungi Fimicoli Italici” (Doveri 2004a) is complementary to the paper recently published the first monograph on Basidiomycetes and in this journal (Doveri 2010b). -
Coprophilous Fungi from Brazil: Updated Identification Keys to All Recorded Species
Phytotaxa 436 (2): 104–124 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.436.2.2 Coprophilous fungi from Brazil: updated identification keys to all recorded species ROGER FAGNER RIBEIRO MELO1*, NICOLE HELENA DE BRITO GONDIM1, ANDRÉ LUIZ CABRAL MONTEIRO DE AZEVEDO SANTIAGO1, LEONOR COSTA MAIA1 & ANDREW NICHOLAS MILLER2 1Universidade Federal de Pernambuco, Centro de Biociências, Departamento de Micologia, Av. da Engenharia, s/n, 50740‒600, Recife, Pernambuco, Brazil 2University of Illinois at Urbana-Champaign, Illinois Natural History Survey, 1816 South Oak Street, Champaign, IL 61820, USA Correspondence: [email protected] Abstract Taxonomic records of coprophilous fungi from Brazil are revisited. In total, 271 valid species names, including representatives of Ascomycota (187), Basidiomycota (32), Kickxellomycota (2), Mucoromycota (45) and Zoopagomycota (5), are reported from herbivore dung. Identification keys for coprophilous fungi from Brazil are provided, including both recent surveys (2011–2019) and historical literature. Keywords: Agaricales, dung fungi, Mucorales, taxonomy Introduction Fungi able to germinate, live and feed on herbivore dung form a restricted group of microorganisms, commonly referred to as coprophilous fungi (Bell 2005, Kirschner et al. 2015). This ecological group can include highly specialized species that can survive the harse environment of an animal’s gastrointestinal tract, symbionts in an animal’s digestive tract or even generalists, non-specialized species, able to efficiently exploit these substrates (Richardson 2001b). These fungi represent an important component of ecosystems, responsible for recycling the nutrients in animal dung, and provide an important resource for experimental ecology (Krug et al. -
A Bibliography of Podospora and Schizothecium, a Key to the Species, and a Description of Podospora Dasypogon Newly Recorded from Italy
PAGINE DI MICOLOGIA A bibliography of Podospora and Schizothecium, a key to the species, and a description of Podospora dasypogon newly recorded from Italy FRANCESCO DOVERI Via Baciocchi, 9 - I 57126 Livorno - E-mail: [email protected] ABSTRACT An update of Podospora and Schizothecium is presented, based on recent literature. An overview of the genera, and their subfamily, family and order is given, and a collection of Podospora dasypogon new to Italy is described. The author provides additional records of species of Podospora s.l. described in his previous works, and colour photographs of most taxa recorded from Italy, and a dichotomous key to all Podospora s.str. and Schizothecium species. Key words: Systematics, Sordariales, Lasiosphaeriaceae, Podosporoideae, Podospora s.str., Schizothecium, worldwide key. INTRODUCTION Recent molecular studies (HUHNDORF ET AL., 2004; CAI ET AL., 2005; MILLER & HUHNDORF, 2005) have confirmed the independence of Schizothecium Corda from Podospora Ces., which LUNDQVIST (1972), followed by BARRASA & SOLÁNS (1989), had already proved basing his conclusions on clear developmental and morphological differences. We reported (DOVERI, 2004a; DOVERI & COUÈ, 2007) the reasons why a current of thought (FURUYA & UDAGAWA, 1972; KRUG & KHAN, 1989; BELL & MAHONEY, 1995; KIRK ET AL., 2001; DOVERI, 2004A; CHANG & WANG, 2005) had chosen to keep Schizothecium as a synonym of Podospora, and why we have changed our opinion (DOVERI & COUÉ, 2007), to agree with LUNDQVIST (1972). We have dealt partly with Podospora s.l. (inclusive of Schizothecium) (CACIALLI ET AL., 1997; DOVERI ET AL., 1998; DOVERI ET AL., 2000), and provided a worldwide key to Podospora spp. with asci with 4 or more than 8 spores (DOVERI, 2004a).