NPM-ALK Is a Key Regulator of the Oncoprotein FOXM1 in ALK-Positive Anaplastic Large Cell Lymphoma
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Parameter IV Dose (1 Mg/Kg) Oral Dose (10 Mg/Kg)
AG-221, a First-in-Class Therapy Targeting Acute Myeloid Leukemia Harboring Oncogenic IDH2 Mutations Katharine Yen, Jeremy Travins, Fang Wang, Muriel D. David, Erin Artin, Kimberly Straley, Anil Padyana, Stefan Gross, Byron DeLaBarre, Erica Tobin, Yue Chen, Raj Nagaraja, Sung Choe, Lei Jin, Zenon Konteatis, Giovanni Cianchetta, Jeffrey O. Saunders, Francesco G. Salituro, Cyril Quivoron, Paule Opolon, Olivia Bawa, Véronique Saada, Angélo Paci, Sophie Broutin, Olivier Bernard, Stéphane de Botton, Benoît S. Marteyn, Monika Pilichowska, YingXia Xu, Cheng Fang, Fan Jiang, Wentao Wei, Shengfang Jin, Lee Silverman, Wei Liu, Hua Yang, Lenny Dang, Marion Dorsch, Virginie Penard-Lacronique, Scott A. Biller, Shin-San Michael Su SUPPLEMENTARY TABLES Supplementary Table 1. Drug metabolism and pharmacokinetic attributes of AG-221 Parameter IV dose (1 mg/kg) Oral dose (10 mg/kg) CL (l/h/kg) 0.83 ± 0.10 NA Vss (l/kg) 5.5 ± 1.6 NA AUC (h.ng/ml) 1,200 ± 130 5,000 ± 610 t1/2 (h) 5.4 ± 1.8 5.4 ± 1.2 F (%) NA 41 ± 5.0 IV and oral pharmacokinetic parameters of AG-221 in male Sprague-Dawley rats (mean ± s.d., n = 3). AUC, area under plasma concentration curve; CL, clearance; F, absolute oral bioavailability; IV, intravenous; NA, not applicable; t1/2, terminal half-life; Vss, volume of distribution at steady state. Page 1 of 12 Supplementary Table 2. Selectivity of AG-221 confirmed by testing against a panel of kinases Enzyme IC50 of AG-221 IC50 of reference Reference (nM) (nM) P13K >10,000 9.1 PI 103 JNK2 >10,000 5741.2 Staurosporine AKT1 >10,000 9.8 Staurosporine -
Predicting FOXM1-Mediated Gene Regulation Through the Analysis of Genome-Wide FOXM1 Binding Sites in MCF-7, K562, SK-N-SH, GM12878 and ECC-1 Cell Lines
International Journal of Molecular Sciences Article Predicting FOXM1-Mediated Gene Regulation through the Analysis of Genome-Wide FOXM1 Binding Sites in MCF-7, K562, SK-N-SH, GM12878 and ECC-1 Cell Lines 1, , 2, 1 3,4 Keunsoo Kang * y, Yoonjung Choi y, Hoo Hyun Kim , Kyung Hyun Yoo and Sungryul Yu 5,* 1 Department of Microbiology, College of Science & Technology, Dankook University, Cheonan 31116, Korea; [email protected] 2 Deargen Inc., Daejeon 34051, Korea; [email protected] 3 Laboratory of Biomedical Genomics, Department of Biological Sciences, Sookmyung Women’s University, Seoul 04310, Korea; [email protected] 4 Research Institute of Women’s Health, Sookmyung Women’s University, Seoul 04310, Korea 5 Department of Clinical Laboratory Science, Semyung University, Jecheon 27136, Korea * Correspondence: [email protected] (K.K.); [email protected] (S.Y.); Tel.: +82-41-550-3456 (K.K.); +82-43-649-1418 (S.Y.) These authors contributed equally to the work. y Received: 22 June 2020; Accepted: 24 August 2020; Published: 26 August 2020 Abstract: Forkhead box protein M1 (FOXM1) is a key transcription factor (TF) that regulates a common set of genes related to the cell cycle in various cell types. However, the mechanism by which FOXM1 controls the common gene set in different cellular contexts is unclear. In this study, a comprehensive meta-analysis of genome-wide FOXM1 binding sites in ECC-1, GM12878, K562, MCF-7, and SK-N-SH cell lines was conducted to predict FOXM1-driven gene regulation. Consistent with previous studies, different TF binding motifs were identified at FOXM1 binding sites, while the NFY binding motif was found at 81% of common FOXM1 binding sites in promoters of cell cycle-related genes. -
NPM1-ALK (Human) Recombinant Gene Summary: the 2;5 Chromosomal Translocation Is Protein Frequently Associated with Anaplastic Large Cell Lymphomas (Alcls)
NPM1-ALK (Human) Recombinant Gene Summary: The 2;5 chromosomal translocation is Protein frequently associated with anaplastic large cell lymphomas (ALCLs). The translocation creates a fusion Catalog Number: P5782 gene consisting of the ALK (anaplastic lymphoma kinase) gene and the nucleophosmin (NPM) gene: the 3' Regulation Status: For research use only (RUO) half of ALK, derived from chromosome 2, is fused to the 5' portion of NPM from chromosome 5. A recent study Product Description: Human NPM1-ALK (BAA08343.1, shows that the product of the NPM-ALK fusion gene is 1 a.a. - 680 a.a.) partial recombinant protein with GST oncogenic. The deduced amino acid sequences reveal tag expressed in Baculovirus infected Sf21 cells. that ALK is a novel receptor protein-tyrosine kinase having a putative transmembrane domain and an Host: Insect extracellular domain. These sequences are absent in the product of the transforming NPM-ALK gene. ALK shows Theoretical MW (kDa): 103 the greatest sequence similarity to LTK (leukocyte tyrosine kinase). ALK plays an important role in the Applications: Func, SDS-PAGE development of the brain and exerts its effects on (See our web site product page for detailed applications specific neurons in the nervous system. [provided by information) RefSeq] Protocols: See our web site at http://www.abnova.com/support/protocols.asp or product page for detailed protocols Form: Liquid Preparation Method: Baculovirus infected insect cell (Sf21) expression system Purification: Glutathione sepharose chromatography Purity: 81 % by SDS-PAGE/CBB staining Activity: The activity was measured by off-chip mobility shift assay. The enzyme was incubated with fluorescence-labeled substrate and Mg (or Mn)/ATP. -
Activation of AKT/AP1/Foxm1 Signaling Confers Sorafenib Resistance to Liver Cancer Cells
ONCOLOGY REPORTS 42: 785-796, 2019 Activation of AKT/AP1/FoxM1 signaling confers sorafenib resistance to liver cancer cells DONGJING YAN1*, XIAOJING YAN2*, XUFANG DAI3,4*, LINGXI CHEN2, LIANGBO SUN2, TAO LI2, FENGTIAN HE2, JIQIN LIAN2 and WANGWEI CAI1 1Department of Biochemistry and Molecular Biology, Hainan Medical College, Haikou, Hainan 571199; 2Department of Biochemistry and Molecular Biology, Army Medical University, Chongqing 400038; 3Department of Educational Science College, Chongqing Normal University; 4Chongqing Key Laboratory of Psychological Diagnosis and Educational Technology for Children with Special Needs, Chongqing 400047, P.R. China Received December 5, 2018; Accepted June 6, 2019 DOI: 10.3892/or.2019.7192 Abstract. Sorafenib is the first‑line drug used in the treatment the AKT/AP1/FoxM1 signaling axis is an important determi- of liver cancer; however, drug resistance seriously limits the nant of sorafenib tolerance. clinical response to sorafenib. The present study investigated the molecular mechanisms of sorafenib resistance in liver Introduction cancer cells. The data indicated that forkhead box M1 (FoxM1) was significantly overexpressed in sorafenib‑resistant cells, at Liver cancer, the most common primary liver tumor, is the third the mRNA and protein levels. Knockdown of FoxM1 rendered leading cause of cancer mortality globally (1). Surgical resec- drug‑tolerant cells sensitive to sorafenib. Furthermore, FoxM1 tion, thermal ablation and liver transplantation are the current was upregulated at the transcriptional -
Increased Expression of NPM1 Suppresses P27kip1 Function in Cancer Cells
cancers Article Increased Expression of NPM1 Suppresses p27Kip1 Function in Cancer Cells Tatsuya Kometani, Takuya Arai and Taku Chibazakura * Department of Bioscience, Tokyo University of Agriculture 1-1-1, Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan; [email protected] (T.K.); [email protected] (T.A.) * Correspondence: [email protected] Received: 4 August 2020; Accepted: 5 October 2020; Published: 8 October 2020 Simple Summary: Cancer malignancy frequently correlates with a low expression of p27Kip1, a major cyclin-dependent kinase inhibitor, and the p27 protein level has been reportedly responsible for its antiproliferative function. However, we found the function of overexpressed p27 is suppressed in some cancer cells, suggesting that p27 function is also regulated independently of its protein level. The aim of this study was to clarify this unknown p27 regulatory mechanism and its impact on cancer proliferation. We isolated nucleophosmin isoform 1 (NPM1), which is highly expressed in variety of cancers, as a novel p27-interacting protein. Overexpressing NPM1 in normal cells suppressed and silencing NPM1 in cancer cells rescued the p27 function, respectively, in vitro. Moreover, NPM1 silencing and p27 induction in cancer cells significantly suppressed their proliferation in mouse xenografts. Our findings reveal that NPM1 is a novel p27 functional suppressor and a potential anti-cancer target, especially in cancers with normal p27 expression. Abstract: p27Kip1, a major cyclin-dependent kinase inhibitor, is frequently expressed at low levels in cancers, which correlates with their malignancy. However, in this study, we found a qualitative suppression of p27 overexpressed in some cancer cells. By proteomic screening for factors interacting with p27, we identified nucleophosmin isoform 1 (NPM1) as a novel p27-interacting factor and observed that NPM1 protein was expressed at high levels in some cancer cells. -
SUPPLEMENTAL FIGURE LEGENDS Supplemental Figure S1. RBPJ
Xie et al. SUPPLEMENTAL FIGURE LEGENDS Supplemental Figure S1. RBPJ correlates with BTIC marker expression. A-D. The TCGA GBM dataset was downloaded and correlations analyzed by R. RBPJ mRNA levels were highly correlated with (A) Olig2, (B) Sox2, (C) CD133, and (D) Sox4 levels. E. RBPJ is preferentially expressed in proneural glioblastomas. The glioblastoma TCGA dataset was interrogated for RBPJ mRNA expression segregated by transcriptional profile. The proneural tumors were further divided into G-CIMP (glioma CpG-island methylator phenotype) or non-G-CIMP. **, p < 0.01. ****, p < 0.0001. *****, p < 0.00001. Supplemental Figure S2. Targeting RBPJ induces BTIC apoptosis. A. 3691 BTICs were transduced with shCONT, shRBPJ-1, or shRBPJ-2. Lysates were prepared and immunoblotted with the indicated antibodies. shRNA-mediated knockdown of RBPJ was associated with increased cleaved (activated) PARP. B. 3691 BTICs were transduced with shCONT, shRBPJ-1, or shRBPJ-2. Apoptosis measured by Annexin V staining. Data are presented as mean ± SEM (two- way ANOVA; **, p < 0.01; n = 3). Supplemental Figure S3. Targeting RBPJ does not affect non-BTIC proliferation. Non-BTICs (Top, 3691; Bottom, 4121) were transduced with shCONT, shRBPJ-1, or shRBPJ-2. Cell proliferation was measured by CellTiter-Glo. 42 Xie et al. Supplemental Figure S4. RBPJ induces transcriptional profiles in BTICs distinct from Notch activation. A. In parallel experiments, 3691 BTICs were either treated with DAPT (at either 5 μM or 10 μM) vs. vehicle control (DMSO) or transduced with shRBPJ vs. shCONT. RNA-Seq was performed and the results displayed as a heat map with normalization to the relevant control. -
Core Transcription Factors, Oct4, Sox2 and Nanog, Individually Form Complexes with Nucleophosmin (Npm1) to Control Embryonic Stem
www.impactaging.com AGING, November 2010, Vol 2 N 11 Research Paper Core transcription factors, Oct4, Sox2 and Nanog, individually form complexes with nucleophosmin (Npm1) to control embryonic stem (ES) cell fate determination Helena Johansson and Stina Simonsson Department of Medical Biochemistry and Cell Biology; Institute of Biomedicine; University of Gothenburg, box 440, 405 30 Gothenburg, Västra Götaland; Sweden Key words: Npm1, Oct4, Sox2, Nanog, ES cells, Tpt1 Received: 10/25/10; accepted: 11/10/10; published on line: 11/12/10 Corresponding author: Stina Simonsson, PhD; E‐mail: [email protected] Copyright: © Johansson and Simonsson. This is an open‐access article distributed under the terms of the Creative Commons A ttribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Abstract: Embryonic stem (ES) cells have therapeutic potential in regenerative medicine, although the molecular mechanism controlling their pluripotency is not completely understood. Depending on interaction partners most proteins can be involved in several different cellular mechanisms. We screened for novel protein‐protein interactions using in situ proximity ligation assays together with specific antibodies directed against known important ES cell proteins. We found that all three core transcription factors, namely Oct4, Sox2 and Nanog, individually formed complexes with nucleophosmin (Npm1). We showed that the Npm1/Sox2 complex was sustained when cells were induced to differentiate by retinoic acid, while decreased in the other differentiation pathways. Moreover, Oct4 also formed individual complexes with translationally controlled tumor protein (Tpt1). Downregulation of Npm1 or Tpt1 increased mRNA levels for genes involved in mesoderm and ectoderm differentiation pathways, respectively, indicative of their involvement in ES cell maintenance. -
Next Generation Gene Sequencing -Solid Tumor
Cancer‐related Mutaon Analysis Next Generaon Gene Sequencing for Solid Tumors Assay Summary IU Health Molecular Pathology Laboratory now offers high throughput sequencing for hot spot mutations found in clinically relevant cancer genes. In addition to a general panel of 48 genes, selected panels have been developed for a more tailored application in specific cancers. Comparing to single gene assay, these panels offer a more comprehensive and economic way to assess prognosis and/or treatment options for cancer patients at the initial diagnosis or at the relapse. Orderable Name: Use IU Health Molecular Pathology requisition; Call 317.491.6417 for requisition. Panels include: Lung cancer panel AKT1, ALK, BRAF, EGFR, KRAS, MET, NRAS, PIK3CA, PTEN Colon cancer panel APC, AKT1, BRAF, KRAS, NRAS, PIK3CA, PTEN, SMAD4 Gastrointestinal stromal tumor (GIST) panel BRAF, KIT, PDGFRA Melanoma panel BRAF, CTNNB1, GNA11, GNAQ, KIT, NRAS Ovarian cancer panel BRAF, KRAS, PIK3CA, PTEN Thyroid cancer panel KIT, BRAF, RET Breast cancer panel AKT1, ERBB2, PIK3CA Oncology sequencing panel ABL1, AKT1, ALK, APC, ATM, BRAF, CDH1, CDKN2A, CSF1R, CTNNB1, EGFR, ERBB2, ERBB4, FBXW7, FGFR1, FGFR2, FGFR3, FLT3, GNA11, GNAQ, GNAS, HNF1A, HRAS, IDH1, JAK2, JAK3, KDR, KIT, KRAS, MET, MLH1, MPL, NOTCH1, NPM1, NRAS, PDGFRA, PIK3CA, PTEN, PTPN11, RB1, RET, SMAD4, SMARCB1, SMO, SRC, STK11, TP53, VHL Clinical Utility: This test is useful for the assessment of prognosis and/or treatment options for individuals with cancers at initial diagnosis or at replase1. Clinical Information: The Oncology Sequencing Solid Tumor Panel is a highly multiplexed targeted resequencing assay for detecting somatic mutations across hundreds of mutational hotspots in cancer genomes. -
The Roles of FOXM1 in Pancreatic Stem Cells and Carcinogenesis Ming Quan1,3, Peipei Wang2, Jiujie Cui1,3, Yong Gao2 and Keping Xie3*
Quan et al. Molecular Cancer 2013, 12:159 http://www.molecular-cancer.com/content/12/1/159 REVIEW Open Access The roles of FOXM1 in pancreatic stem cells and carcinogenesis Ming Quan1,3, Peipei Wang2, Jiujie Cui1,3, Yong Gao2 and Keping Xie3* Abstract Pancreatic ductal adenocarcinoma (PDAC) has one of the poorest prognoses among all cancers. Over the past several decades, investigators have made great advances in the research of PDAC pathogenesis. Importantly, identification of pancreatic cancer stem cells (PCSCs) in pancreatic cancer cases has increased our understanding of PDAC biology and therapy. PCSCs are responsible for pancreatic tumorigenesis and tumor progression via a number of mechanisms, including extensive proliferation, self-renewal, high tumorigenic ability, high propensity for invasiveness and metastasis, and resistance to conventional treatment. Furthermore, emerging evidence suggests that PCSCs are involved in the malignant transformation of pancreatic intraepithelial neoplasia. The molecular mechanisms that control PCSCs are related to alterations of various signaling pathways, for instance, Hedgehog, Notch, Wnt, B-cell-specific Moloney murine leukemia virus insertion site 1, phosphoinositide 3-kinase/AKT, and Nodal/Activin. Also, authors have reported that the proliferation-specific transcriptional factor Forkhead box protein M1 is involved in PCSC self-renewal and proliferation. In this review, we describe the current knowledge about the signaling pathways related to PCSCs and the early stages of PDAC development, highlighting the pivotal roles of Forkhead box protein M1 in PCSCs and their impacts on the development and progression of pancreatic intraepithelial neoplasia. Keywords: Transcription factors, Oncogenic switch, Progression, Stem cells, Therapeutic targets, Molecular biomarkers Introduction roles of pancreatic CSCs (PCSCs) in pancreatic cancer de- The incidence of pancreatic cancer is increasing annu- velopment and progression is imperative. -
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Probe List Series Stem Cell Research RNAscope® Probes for Stem Cells Research Get probes for your gene of interest designed and manufactured in two weeks. Featured Publications using Detection of Stem Cell Markers gene of interest, as for example long non-coding RNAscope® Technology RNA. The RNAscope® assay allows you to visualize The rapid and expansive field of stem cell biology and quantify virtually any gene from any genome in Wnts produced by Osterix- has demonstrated the remarkable capabilities any tissue. expressing osteolineage cells of these cells to self-renew, differentiate, and regulate their proliferation and reprogram. Yet the field is still burgeoning with differentiation. studies trying to elucidate stem cell populations, Tan SH. et. al. Proc Natl Acad Sci USA. 2014. Dec 9;111(49): characterize stem cell markers, and identify the ® E5262-71.PMID: 25422448 signals secreted from stem cells. RNAscope in situ hybridization (ISH) technology enables cell- Characterization of LGR5 stem specific localization of RNA transcripts quickly cells in colorectal adenomas and and precisely for markers of stem cell populations. carcinomas. The RNAscope® assay can be used to: Baker AM. et. al. Sci Rep. 2015 Mar 2;5:8654.PMID: 25728748 • Identify, characterize, and locate stem PMID: 25728748 cell populations • Reveal markers of stem cell maintenance Pontin functions as an essential coactivator for Oct4-dependent and regeneration lincRNA expression in mouse • Identify long non-coding RNAs in stem cells FIGURE 1. Detection of TP63 mRNA expression in embryonic stem cells. ® • Detect stem cell markers when no reliable human prostate FFPE tissue using RNAscope 2.0 HD Boo K. -
FOXM1 Is a Transcriptional Target of Erα and Has a Critical Role in Breast
Oncogene (2010) 29, 2983–2995 & 2010 Macmillan Publishers Limited All rights reserved 0950-9232/10 $32.00 www.nature.com/onc ORIGINAL ARTICLE FOXM1 is a transcriptional target of ERa and has a critical role in breast cancer endocrine sensitivity and resistance J Millour1, D Constantinidou1, AV Stavropoulou1, MSC Wilson1, SS Myatt1, JM-M Kwok1, K Sivanandan1, RC Coombes1, RH Medema2, J Hartman3, AE Lykkesfeldt4 and EW-F Lam1 1Department of Surgery and Cancer, Imperial College London, London, UK; 2Department of Medical Oncology, University Medical Center Utrecht, Utrecht, The Netherlands; 3Department of Oncology and Pathology, Karolinska Institutet, Stockholm, Sweden and 4Department of Breast Cancer Research, Institute of Cancer Biology, Danish Cancer Society, Copenhagen, Denmark In this study, we investigated the regulation of FOXM1 Introduction expression by estrogen receptor a (ERa) and its role in hormonal therapy and endocrine resistance. FOXM1 Breast cancer is the second most prevalent cause of protein and mRNA expression was regulated by ER- cancer death in the western hemisphere and displays a ligands, including estrogen, tamoxifen (OHT) and fulves- complex aeitology. The forkhead box (FOX) family trant (ICI182780; ICI) in breast carcinoma cell lines. member FOXM1 was previously reported to be elevated Depletion of ERa by RNA interference (RNAi) in MCF-7 in breast cancer as well as in carcinomas of other origins cells downregulated FOXM1 expression. Reporter gene (Pilarsky et al., 2004). FOXM1 is expressed in prolifer- assays showed that ERa activates FOXM1 transcription ating adult tissues and in response to injury or repair through an estrogen-response element (ERE) located (Korver et al., 1997a, b; Ye et al., 1999; Leung et al., within the proximal promoter region. -
Molecular Pathology Tests
Cleveland Clinic Laboratories Molecular Pathology Tests Molecular Cytogenetics IGK PCR (BIOMED-2 Primers) Chromosome Studies TCRB PCR (BIOMED-2 Primers) Postnatal: TCRG PCR (BIOMED-2 Primers) Peripheral blood IGH (Southern blot) Fibroblasts TCRß (Southern blot) Products of Conception: BCL2 mbr (PCR) CVS (chorionic villi) p210 BCR/ABL1( RT-PCR, quantitative) Placenta p190 BCR/ABL1( RT-PCR, quantitative) Skin BCR/ABL Kinase Domain Mutation Analysis Bone PML/RARA RT-PCR, qualitative Cancer: Nucleophosmin gene (NPM1) mutation analysis ** Bone Marrow FLT3 Gene Mutations Leukemic blood JAK2 V617F mutation (PCR) Lymph node Fluorescence in-situ hybridization Fatty tumors 5q Renal tissue ALK Chromosomal Microarray BCL2 Whole Genome microarray (Oligo array) BCL6 BCR/ABL1 Molecular Genetic Pathology BIRC3(API2)/MALT1 Alpha-1-Antitrypsin genotyping (S and Z alleles) CBFB/MYH11 (inv 16) CYP2C9 and VKORC1 Warfarin PGX CLL (13q,11q, 17p,+12) CYP2C19 Clopidogrel PGX ETV6/RUNX1 (TEL/AML1) CYP2D6 FGFR1 CYP2D6 Tamoxifen PGX IGH Cystic fibrosis [ACOG panel] (PCR) IGH/BCL2 DNA fingerprinting for identity (STR;PCR) IGH/CCND1 Factor V Leiden (PCR) IGH/MALT1 Fragile X syndrome (FMR1) DNA analysis (PCR) IGH/MYC HFE [Hereditary Hemochromatosis] (PCR) MALT1(18q21) MTHFR (PCR) MLL PLA1, PLA2 (PCR) MYC Progenitor cell engraftment monitoring (STR;PCR) Myelodysplasia (-5/5q, -7/7q,+8,-20q) Prothrombin G20210A (PCR) Plasma cell myeloma [13q, IGH, TP53, t(11,14), t(4;14), Transthyretin (TTR) exon sequencing t(14;16)] VWF exon 28 sequencing PDGFRA PDGFRB Molecular Hematopathology