The Role of Microorganisms on the Formation of a Stalactite

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The Role of Microorganisms on the Formation of a Stalactite EGU Journal Logos (RGB) Open Access Open Access Open Access Advances in Annales Nonlinear Processes Geosciences Geophysicae in Geophysics Open Access Open Access Natural Hazards Natural Hazards and Earth System and Earth System Sciences Sciences Discussions Open Access Open Access Atmospheric Atmospheric Chemistry Chemistry and Physics and Physics Discussions Open Access Open Access Atmospheric Atmospheric Measurement Measurement Techniques Techniques Discussions Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Open Access Biogeosciences Discuss., 10, 6563–6603, 2013 Open Access www.biogeosciences-discuss.net/10/6563/2013/ Biogeosciences Biogeosciences BGD doi:10.5194/bgd-10-6563-2013 Discussions © Author(s) 2013. CC Attribution 3.0 License. 10, 6563–6603, 2013 Open Access Open Access This discussion paper is/has been under review for the journal BiogeosciencesClimate (BG). Climate The role of Please refer to the correspondingof finalthe Past paper in BG if available. of the Past Discussions microorganisms on the formation of a Open Access The role of microorganisms on the Open Access stalactite Earth System Earth System formation of aDynamics stalactite in BotovskayaDynamics M. Pacton et al. Discussions Open Access Cave, Siberia – palaeoenvironmental Open Access Geoscientific Geoscientific Title Page implicationsInstrumentation Instrumentation Methods and Methods and Abstract Introduction Data Systems Data Systems 1 1 1 2 3 M. Pacton , S. F. M. Breitenbach , F. A. Lechleitner , A. Vaks , C. Rollion-BardDiscussions , Conclusions References Open Access 4 5 Open Access 1 O. S. Gutareva , A. V. Osinzev , and C. Vasconcelos Geoscientific Geoscientific Tables Figures 1 Model Development Geological Institute,Model ETH-Z urich,Development¨ Sonneggstrasse 5, 8092 Zurich, Switzerland 2 Discussions Department of Earth Sciences, University of Oxford, South Parks Road, Oxford OX1 3AN, UK J I 3 Open Access Centre de Recherches Petrographiques´ etGeochimiques,Open Access UMR 7358, Universite´ de Lorraine, 54500 Vandoeuvre-lHydrologyes-Nancy,` and France Hydrology and J I 4Institute of Earth’s Crust, RussianEarth System Academy of Sciences, Siberian Branch,Earth System 128 Lermontova Back Close Street, Irkutsk 664033, Russia Sciences Sciences 5 Arabica Speleological Club, Mamin-Sibiryak Street, Irkutsk 554082, Box 350,Discussions Russia Full Screen / Esc Open Access Open Access Received: 20 March 2013 – Accepted: 29 March 2013 – Published:Ocean 8 April 2013Science Ocean Science Printer-friendly Version Correspondence to: M. Pacton ([email protected]) Discussions Published by Copernicus Publications on behalf of the European Geosciences Union. Interactive Discussion Open Access Open Access 6563 Solid Earth Solid Earth Discussions Open Access Open Access The Cryosphere The Cryosphere Discussions Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | Abstract BGD Calcitic speleothems in caves can form through abiogenic, biogenic, or a combination of both processes. Many issues conspire to make the assessment of biogenicity diffi- 10, 6563–6603, 2013 cult, especially when focusing on old speleothem deposits. This study reports a multi- 5 proxy analysis of a Siberian stalactite, combining high-resolution microscopy, isotope The role of geochemistry and microbially enhanced mineral precipitation laboratory experiments. microorganisms on The contact between growth layers in a stalactite exhibits a biogenic isotopic sig- the formation of a nature; coupled with morphological evidence this supports a microbial origin of calcite stalactite crystals. SIMS δ13C data suggest that microbially mediated speleothem formation oc- 10 curred repeatedly for short intervals before abiotic precipitation took over. The studied M. Pacton et al. stalactite also contains iron and manganese oxides that have been mediated by micro- bial activity through extracellular polymeric substances (EPS)-influenced organomin- eralization processes. The latter reflect palaeoenvironmental changes that occurred Title Page more than 500 000 yr ago, possibly related to the presence of a peat bog above the Abstract Introduction 15 cave at that time. Microbial activity can initiate calcite deposition in the aphotic zone of caves before Conclusions References inorganic precipitation of speleothem carbonates. This study highlights the importance Tables Figures of microbially induced fractionation that can result in large negative δ13C excursions. The micro-scale biogeochemical processes imply that microbial activity has only negli- 13 J I 20 gible effects on the bulk δ C signature in speleothems, which is more strongly affected by CO2 degassing and the hostrock signature. J I Back Close 1 Introduction Full Screen / Esc The growth of speleothems, such as stalactites and stalagmites, through the precipita- tion of calcite has commonly been viewed as an abiogenic process (e.g. Kendall and Printer-friendly Version 25 Broughton, 1978; Broughton, 1983a, b, c). However, there is a growing body of re- search suggesting that microbes may play an important role in carbonate precipitation Interactive Discussion 6564 Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | during speleothem growth (e.g. Jones and Motyka, 1987; Northup and Lavoie, 2001; Mulec et al., 2007; Jones, 2010; Baskar et al., 2005, 2006). In caves, a variety of precip- BGD itation and dissolution processes results in the deposition of carbonate speleothems, 10, 6563–6603, 2013 silicates, iron and manganese oxides, sulfur compounds, and nitrates, but also the 5 breakdown of limestone host rock. Cave microbes mediate a wide range of destructive and constructive processes that collectively can influence the growth of speleothems The role of and their internal crystal fabric (Jones, 2010). Constructive processes include microbe microorganisms on calcification, trapping and binding by filamentous microbes, and/or mineral precipita- the formation of a tion (Canaveras˜ et al., 2001; Jones, 2001). Destructive processes include microbially stalactite 10 influenced corrosion or dissolution of mineral surfaces that can occur through mechan- ical attack, secretion of exoenzymes, organic and mineral acids (e.g. sulfuric acid), and M. Pacton et al. a variety of other mechanisms (for a summary please refer to Sand, 1997). Of par- ticular interest in cave dissolution processes are reactions involving iron-, sulfur-, and Title Page manganese oxidizing bacteria (Northup and Lavoie, 2001). Iron oxides and hydroxides 15 are most often observed as coatings or crusts and as powder on clastic cave walls, Abstract Introduction but they also exist as typical speleothems such as stalactites (e.g. Caldwell and Cald- well, 1980; Jones and Motyka, 1987). Several descriptive studies have established the Conclusions References association of bacteria with iron deposits in caves, but experimental evidence for an Tables Figures active microbial role in the formation of iron deposits in caves is still lacking (Northup 20 and Lavoie, 2001). J I With regard to flora and fauna, caves are usually divided into two segments: (i) a twi- light zone and (ii) an aphotic zone, characterized by no light and few microbes (Jones, J I 2010). In this study we focus on a stalactite found in the aphotic zone. The sample Back Close contains mainly calcite and ferromanganese oxides which is unusual in this continental 25 setting as they are widely encountered in warm environments (e.g. Spilde et al., 2005). Full Screen / Esc The presence of microbes does not automatically imply that they played a role in the formation of the surrounding minerals because they may simply have been buried dur- Printer-friendly Version ing mineral precipitation (Polyak and Cokendolpher, 1992; Forti, 2001). Assessment of the exact role that the microbes played in the mineral precipitation is usually considered Interactive Discussion 6565 Discussion Paper | Discussion Paper | Discussion Paper | Discussion Paper | impossible to determine (Jones, 2010). However, by combining microscopical and geo- chemical evidence at a high spatial resolution, we aim to precisely constrain the role of BGD microbes in stalactite formation in this cave. 10, 6563–6603, 2013 Calcite δ13C has been interpreted to reflect surface vegetation changes (C3 vs. C4: 5 Brook et al., 1990; Dorale et al., 1992; Bar-Matthews et al., 1997; Hou et al., 2003; Den- niston et al., 2007), although more recent studies point to cave air ventilation as a major The role of influence (Tremaine et al., 2011). It has been demonstrated that degassing of CO2 from microorganisms on the dripwater controls the rate of calcite precipitation (Mickler et al., 2004, 2006; Spotl¨ the formation of a et al., 2005; Bourges et al., 2006; Baldini et al., 2008; Kowalczk and Froelich, 2010), stalactite 10 as well as the isotopic composition of dripwater and subsequent calcite (Mattey et al., 2008; Muhlinghaus¨ et al., 2007, 2009; Oster et al., 2010; Frisia et al., 2011; Lambert M. Pacton et al. and Aharon, 2011). These studies show that – if carefully evaluated – δ13C can be used as paleoclimatic indicator. However, the potential impact of microbial activity on Title Page carbon isotope fractionation is usually overlooked in paleoclimate studies. We aim to 15 investigate this impact in detail in the current work. Abstract Introduction Conclusions References 2 Study site Tables Figures Botovskaya cave is located in Siberia (55◦ 170 5900 N, 105◦ 190 4600 E, 750 m a.s.l.) (Fig. 1 and Fig. S3 in Vaks
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