Approaching Ancient Disease from a One
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Environment-Dependent Variation in Gut Microbiota of an Oviparous Lizard (Calotes Versicolor)
animals Article Environment-Dependent Variation in Gut Microbiota of an Oviparous Lizard (Calotes versicolor) Lin Zhang 1,2,*,† , Fang Yang 3,†, Ning Li 4 and Buddhi Dayananda 5 1 School of Basic Medical Sciences, Hubei University of Chinese Medicine, Wuhan 430065, China 2 State Key Laboratory of Microbial Technology, Institute of Microbial Technology, Shandong University, Qingdao 266237, China 3 School of Laboratory Medicine, Hubei University of Chinese Medicine, Wuhan 430065, China; [email protected] 4 College of Food Science, Nanjing Xiaozhuang University, Nanjing 211171, China; [email protected] 5 School of Agriculture and Food Sciences, The University of Queensland, Brisbane, QLD 4072, Australia; [email protected] * Correspondence: [email protected] † These authors contributed equally to this work. Simple Summary: The different gut sections potentially provide different habitats for gut microbiota. We found that Bacteroidetes, Firmicutes, and Proteobacteria were the three primary phyla in gut micro- biota of C. versicolor. The relative abundance of dominant phyla Bacteroidetes and Firmicutes exhibited an increasing trend from the small intestine to the large intestine, and there was a higher abun- dance of genus Bacteroides (Class: Bacteroidia), Coprobacillus and Eubacterium (Class: Erysipelotrichia), Parabacteroides (Family: Porphyromonadaceae) and Ruminococcus (Family: Lachnospiraceae), and Family Odoribacteraceae and Rikenellaceae in the hindgut, and some metabolic pathways were higher in the hindgut. Our results reveal the variations of gut microbiota composition and metabolic pathways in Citation: Zhang, L.; Yang, F.; Li, N.; different parts of the lizards’ intestine. Dayananda, B. Environment- Dependent Variation in Gut Abstract: Vertebrates maintain complex symbiotic relationships with microbiota living within their Microbiota of an Oviparous Lizard gastrointestinal tracts which reflects the ecological and evolutionary relationship between hosts and (Calotes versicolor). -
Characterization of Environmental and Cultivable Antibiotic- Resistant Microbial Communities Associated with Wastewater Treatment
antibiotics Article Characterization of Environmental and Cultivable Antibiotic- Resistant Microbial Communities Associated with Wastewater Treatment Alicia Sorgen 1, James Johnson 2, Kevin Lambirth 2, Sandra M. Clinton 3 , Molly Redmond 1 , Anthony Fodor 2 and Cynthia Gibas 2,* 1 Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA; [email protected] (A.S.); [email protected] (M.R.) 2 Department of Bioinformatics and Genomics, University of North Carolina at Charlotte, Charlotte, NC 28223, USA; [email protected] (J.J.); [email protected] (K.L.); [email protected] (A.F.) 3 Department of Geography & Earth Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-704-687-8378 Abstract: Bacterial resistance to antibiotics is a growing global concern, threatening human and environmental health, particularly among urban populations. Wastewater treatment plants (WWTPs) are thought to be “hotspots” for antibiotic resistance dissemination. The conditions of WWTPs, in conjunction with the persistence of commonly used antibiotics, may favor the selection and transfer of resistance genes among bacterial populations. WWTPs provide an important ecological niche to examine the spread of antibiotic resistance. We used heterotrophic plate count methods to identify Citation: Sorgen, A.; Johnson, J.; phenotypically resistant cultivable portions of these bacterial communities and characterized the Lambirth, K.; Clinton, -
A Study of Brucella Inner Lipopolysaccharide Sections
A mis aitas A Joseba La vida es una obra de teatro que no permite ensayos; por eso canta, ríe, baila, llora y vive intensamente cada momento de tu vida antes que el telón baje y la obra termine sin aplausos. Charles Chaplin Agradecimientos He leído un proverbio Masai que dice que Si quieres ir rápido camina solo, si quieres llegar lejos ve acompañado. Nada de lo que he conseguido hubiera sido posible sin todos y cada uno de los que me habéis acompañado y ayudado a construir este camino. Por eso, quiero agradecer, en primer lugar, a todo el Departamento de Microbiología y Parasitología de la Universidad de Navarra por hacerme sentir como en casa. Sois una gran familia, gracias por acogerme con los brazos abiertos desde el día en que llegué. Gracias a las doctoras Maite Iriarte y Raquel Conde por la excelente dirección de este trabajo, el apoyo y el cariño que me habéis dado durante estos años. Raquel, gracias por estar en todo momento disponible para resolver mis dudas, por alegrarte de las buenas noticias (incluso a veces más que yo) y hacerme ver que las malas eran menos malas. Porque sin ti nada de esto hubiera sido posible. Por involucrarte siempre con ilusión y saber transmitirme ganas de aprender. Maite, por la paciencia, por enseñarme a escribir entendiendo el porqué de las cosas y hacer que las ideas cobrasen sentido; por tu implicación en esta recta final de la tesis. Gracias también al Doctor Ignacio Moriyón, por ser el alma del grupo Brucella, gracias por tus consejos y ayuda, por enseñarnos a mirar con otros ojos. -
Brucellosis 2014 International Research Conference
SCHEDULE 2014 Federal Institute for Risk Assessment Brucellosis 2014 International Research Conference BERLIN | 9–12 September 2014 Imprint Abstracts Brucellosis 2014 International Research Conference All authors are responsible for the content of their respective abstracts. Federal Institute for Risk Assessment Communication and Public Relations Office Max-Dohrn-Straße 8–10 10589 Berlin Germany Berlin 2014 222 Pages Photo: flobox/Quelle: PHOTOCASE Printing: cover, content pages and bookbinding BfR-printing house Brucellosis 2014 International Research Conference 3 Welcoming Addresses Andreas Hensel President of the Federal Institute for Risk Assessment (BfR) Welcoming address by the President of the Federal Institute for Risk Assessment More than 100 years after the first description of Micrococcus melitensis by Sir David Bruce, brucellosis is still of major public health concern both in endemic and non-endemic countries all over the world. The impact on animal and human health is tremendous and eradication and control of this zoonotic disease remains a global and interdisciplinary challenge. Alt- hough eradicated in German livestock brucellosis is still a matter of interest because it has emerged as a disease among immigrants associated with diagnostic delays, possibly result- ing in treatment failures, relapses, chronic courses, focal complications, and a high case- fatality rate. The identification of health risks is the guiding principle for our work in the field of food safety and consumer protection. A total of 800 employees spare no effort to prove that no risk is more fun . I am delighted to host the Brucellosis 2014 International Research Conference at the Federal Institute for Risk Assessment, here in Berlin, the capital city of Germany, which was home and domain of so many Nobel laureates. -
Product Information Sheet for NR-50276
Product Information Sheet for NR-50276 Brucella melitensis, Strain 16MΔvjbR abortion and infertility. Transmission from animal to human via contact with infected animal products or through the air may lead to Malta (or undulant) fever, a long debilitating Catalog No. NR-50276 disease treatable by a prolonged course of antibiotics. This reagent is the property of the U.S. Government. Brucella species are recognized as potential agricultural, civilian, and military bioterrorism agents.4 For research use only. Not for human use. Material Provided: Contributor: Each vial contains approximately 0.7 mL of bacterial culture Thomas A. Ficht, Professor, College of Veterinary Medicine in Tryptic Soy broth supplemented with 10% glycerol. and Biological Sciences, Department of Veterinary Pathobiology, Texas A&M University, College Station, Texas, Note: If homogeneity is required for your intended use, please USA purify prior to initiating work. Manufacturer: Packaging/Storage: BEI Resources NR-50276 was packaged aseptically, in screw-capped plastic cryovials. The product is provided frozen and should be Product Description: stored at -60°C or colder immediately upon arrival. For long- Bacteria Classification: Brucellaceae, Brucella term storage, the vapor phase of a liquid nitrogen freezer is Species: Brucella melitensis recommended. Freeze-thaw cycles should be avoided. Biotype/Biovar: 1 Strain: 16MΔvjbR Growth Conditions: Original Source: Brucella melitensis (B. melitensis), strain Note: Passage of this organism can result in the accumulation 16MΔvjbR -
Identification of an Unusual Brucella Strain
Tiller et al. BMC Microbiology 2010, 10:23 http://www.biomedcentral.com/1471-2180/10/23 RESEARCH ARTICLE Open Access Identification of an unusual Brucella strain (BO2) from a lung biopsy in a 52 year-old patient with chronic destructive pneumonia Rebekah V Tiller1, Jay E Gee1, David R Lonsway1, Sonali Gribble2,3, Scott C Bell2, Amy V Jennison4, John Bates4, Chris Coulter2,3, Alex R Hoffmaster1, Barun K De1* Abstract Background: Brucellosis is primarily a zoonotic disease caused by Brucella species. There are currently ten Brucella spp. including the recently identified novel B. inopinata sp. isolated from a wound associated with a breast implant infection. In this study we report on the identification of an unusual Brucella-like strain (BO2) isolated from a lung biopsy in a 52-year-old patient in Australia with a clinical history of chronic destructive pneumonia. Results: Standard biochemical profiles confirmed that the unusual strain was a member of the Brucella genus and the full-length 16S rRNA gene sequence was 100% identical to the recently identified B. inopinata sp. nov. (type strain BO1T). Additional sequence analysis of the recA, omp2a and 2b genes; and multiple locus sequence analysis (MLSA) demonstrated that strain BO2 exhibited significant similarity to the B. inopinata sp. compared to any of the other Brucella or Ochrobactrum species. Genotyping based on multiple-locus variable-number tandem repeat analysis (MLVA) established that the BO2 and BO1Tstrains form a distinct phylogenetic cluster separate from the other Brucella spp. Conclusion: Based on these molecular and microbiological characterizations, we propose that the BO2 strain is a novel lineage of the newly described B. -
Research Collection
Research Collection Doctoral Thesis Development and application of molecular tools to investigate microbial alkaline phosphatase genes in soil Author(s): Ragot, Sabine A. Publication Date: 2016 Permanent Link: https://doi.org/10.3929/ethz-a-010630685 Rights / License: In Copyright - Non-Commercial Use Permitted This page was generated automatically upon download from the ETH Zurich Research Collection. For more information please consult the Terms of use. ETH Library DISS. ETH NO.23284 DEVELOPMENT AND APPLICATION OF MOLECULAR TOOLS TO INVESTIGATE MICROBIAL ALKALINE PHOSPHATASE GENES IN SOIL A thesis submitted to attain the degree of DOCTOR OF SCIENCES of ETH ZURICH (Dr. sc. ETH Zurich) presented by SABINE ANNE RAGOT Master of Science UZH in Biology born on 25.02.1987 citizen of Fribourg, FR accepted on the recommendation of Prof. Dr. Emmanuel Frossard, examiner PD Dr. Else Katrin Bünemann-König, co-examiner Prof. Dr. Michael Kertesz, co-examiner Dr. Claude Plassard, co-examiner 2016 Sabine Anne Ragot: Development and application of molecular tools to investigate microbial alkaline phosphatase genes in soil, c 2016 ⃝ ABSTRACT Phosphatase enzymes play an important role in soil phosphorus cycling by hydrolyzing organic phosphorus to orthophosphate, which can be taken up by plants and microorgan- isms. PhoD and PhoX alkaline phosphatases and AcpA acid phosphatase are produced by microorganisms in response to phosphorus limitation in the environment. In this thesis, the current knowledge of the prevalence of phoD and phoX in the environment and of their taxonomic distribution was assessed, and new molecular tools were developed to target the phoD and phoX alkaline phosphatase genes in soil microorganisms. -
Brucella Genomics: Macro and Micro Evolution
International Journal of Molecular Sciences Review Brucella Genomics: Macro and Micro Evolution Marcela Suárez-Esquivel 1 , Esteban Chaves-Olarte 2, Edgardo Moreno 1 and Caterina Guzmán-Verri 1,2,* 1 Programa de Investigación en Enfermedades Tropicales, Escuela de Medicina Veterinaria, Universidad Nacional, Heredia 3000, Costa Rica; [email protected] (M.S.-E.); [email protected] (E.M.) 2 Centro de Investigación en Enfermedades Tropicales, Facultad de Microbiología, Universidad de Costa Rica, San José 1180, Costa Rica; [email protected] * Correspondence: [email protected] Received: 1 September 2020; Accepted: 11 October 2020; Published: 20 October 2020 Abstract: Brucella organisms are responsible for one of the most widespread bacterial zoonoses, named brucellosis. The disease affects several species of animals, including humans. One of the most intriguing aspects of the brucellae is that the various species show a ~97% similarity at the genome level. Still, the distinct Brucella species display different host preferences, zoonotic risk, and virulence. After 133 years of research, there are many aspects of the Brucella biology that remain poorly understood, such as host adaptation and virulence mechanisms. A strategy to understand these characteristics focuses on the relationship between the genomic diversity and host preference of the various Brucella species. Pseudogenization, genome reduction, single nucleotide polymorphism variation, number of tandem repeats, and mobile genetic elements are unveiled markers for host adaptation and virulence. Understanding the mechanisms of genome variability in the Brucella genus is relevant to comprehend the emergence of pathogens. Keywords: Brucella; brucellosis; genome reduction; pseudogene; IS711; SNPs 1. Introduction The Proteobacteria phylum represents the most extensive bacteria domain known. -
The Changing Ecology: Novel Reservoirs, New Threats Georgios Pappas
The changing ecology: novel reservoirs, new threats Georgios Pappas To cite this version: Georgios Pappas. The changing ecology: novel reservoirs, new threats. International Journal of Antimicrobial Agents, Elsevier, 2010, 36, 10.1016/j.ijantimicag.2010.06.013. hal-00632724 HAL Id: hal-00632724 https://hal.archives-ouvertes.fr/hal-00632724 Submitted on 15 Oct 2011 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Accepted Manuscript Title: The changing Brucella ecology: novel reservoirs, new threats Author: Georgios Pappas PII: S0924-8579(10)00254-2 DOI: doi:10.1016/j.ijantimicag.2010.06.013 Reference: ANTAGE 3349 To appear in: International Journal of Antimicrobial Agents Please cite this article as: Pappas G, The changing Brucella ecology: novel reservoirs, new threats, International Journal of Antimicrobial Agents (2010), doi:10.1016/j.ijantimicag.2010.06.013 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. -
1 Preventing Laboratory-Acquired Brucellosis in the Era of MALDI-TOF
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 20 July 2020 doi:10.20944/preprints202007.0465.v1 1 Preventing Laboratory-acquired Brucellosis in the Era of MALDI-TOF Technology and Molecular Tests Pablo Yagupsky, MD Clinical Microbiology Laboratory, Soroka University Medical Center, Ben-Gurion University of the Negev, Beer-Sheva, Israel Manuscript word count: 4111 Abstract word count: 199 Corresponding Author: Pablo Yagupsky, Clinical Microbiology Laboratory, Soroka University Medical Center, Ben-Gurion University of the Negev, Beer-Sheva, Israel 84101. Phone number: (972) 506264359. Fax number: (972) 86403541. e-mail: [email protected] Abstract © 2020 by the author(s). Distributed under a Creative Commons CC BY license. Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 20 July 2020 doi:10.20944/preprints202007.0465.v1 2 Brucellosis is one of the most common etiologies of laboratory-acquired infections worldwide, and handling of living brucellae should be performed in a Class II biological safety cabinet. The low infecting dose, multiple portals of entry to the body, the great variety of potentially contaminated specimens, and the unspecific clinical manifestations of human infections facilitate the unintentional transmission of brucellae to laboratory personnel. Work accidents such as spillage of culture media cause only a small minority of exposures, whereas >80% of events result from unfamiliarity with the phenotypic features of the genus, misidentification of isolates, and unsafe laboratory practices such as aerosolization of bacteria and working on an open bench without protective goggles or gloves. Although the bacteriological diagnosis of brucellae by traditional methods is simple, the Gram stain and the biochemical profile of the organism, as determined by commercial kits, can be misleading, resulting in inadvertent exposure and contagion. -
Horizontal Gene Transfer to a Defensive Symbiont with a Reduced Genome
bioRxiv preprint doi: https://doi.org/10.1101/780619; this version posted September 24, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Horizontal gene transfer to a defensive symbiont with a reduced genome 2 amongst a multipartite beetle microbiome 3 Samantha C. Waterwortha, Laura V. Flórezb, Evan R. Reesa, Christian Hertweckc,d, 4 Martin Kaltenpothb and Jason C. Kwana# 5 6 Division of Pharmaceutical Sciences, School of Pharmacy, University of Wisconsin- 7 Madison, Madison, Wisconsin, USAa 8 Department of Evolutionary Ecology, Institute of Organismic and Molecular Evolution, 9 Johannes Gutenburg University, Mainz, Germanyb 10 Department of Biomolecular Chemistry, Leibniz Institute for Natural Products Research 11 and Infection Biology, Jena, Germanyc 12 Department of Natural Product Chemistry, Friedrich Schiller University, Jena, Germanyd 13 14 #Address correspondence to Jason C. Kwan, [email protected] 15 16 17 18 1 bioRxiv preprint doi: https://doi.org/10.1101/780619; this version posted September 24, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 19 ABSTRACT 20 The loss of functions required for independent life when living within a host gives rise to 21 reduced genomes in obligate bacterial symbionts. Although this phenomenon can be 22 explained by existing evolutionary models, its initiation is not well understood. -
Taxonomic Hierarchy of the Phylum Proteobacteria and Korean Indigenous Novel Proteobacteria Species
Journal of Species Research 8(2):197-214, 2019 Taxonomic hierarchy of the phylum Proteobacteria and Korean indigenous novel Proteobacteria species Chi Nam Seong1,*, Mi Sun Kim1, Joo Won Kang1 and Hee-Moon Park2 1Department of Biology, College of Life Science and Natural Resources, Sunchon National University, Suncheon 57922, Republic of Korea 2Department of Microbiology & Molecular Biology, College of Bioscience and Biotechnology, Chungnam National University, Daejeon 34134, Republic of Korea *Correspondent: [email protected] The taxonomic hierarchy of the phylum Proteobacteria was assessed, after which the isolation and classification state of Proteobacteria species with valid names for Korean indigenous isolates were studied. The hierarchical taxonomic system of the phylum Proteobacteria began in 1809 when the genus Polyangium was first reported and has been generally adopted from 2001 based on the road map of Bergey’s Manual of Systematic Bacteriology. Until February 2018, the phylum Proteobacteria consisted of eight classes, 44 orders, 120 families, and more than 1,000 genera. Proteobacteria species isolated from various environments in Korea have been reported since 1999, and 644 species have been approved as of February 2018. In this study, all novel Proteobacteria species from Korean environments were affiliated with four classes, 25 orders, 65 families, and 261 genera. A total of 304 species belonged to the class Alphaproteobacteria, 257 species to the class Gammaproteobacteria, 82 species to the class Betaproteobacteria, and one species to the class Epsilonproteobacteria. The predominant orders were Rhodobacterales, Sphingomonadales, Burkholderiales, Lysobacterales and Alteromonadales. The most diverse and greatest number of novel Proteobacteria species were isolated from marine environments. Proteobacteria species were isolated from the whole territory of Korea, with especially large numbers from the regions of Chungnam/Daejeon, Gyeonggi/Seoul/Incheon, and Jeonnam/Gwangju.