Studies Toward the Comprehension of Fungal-Macroalgae Interaction in Cold Marine Regions from a Biotechnological Perspective
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Calcium Affects Polyphosphate and Lipid Accumulation in Mucoromycota Fungi
Journal of Fungi Article Calcium Affects Polyphosphate and Lipid Accumulation in Mucoromycota Fungi Simona Dzurendova 1,*, Boris Zimmermann 1 , Achim Kohler 1, Kasper Reitzel 2 , Ulla Gro Nielsen 3 , Benjamin Xavier Dupuy--Galet 1 , Shaun Leivers 4 , Svein Jarle Horn 4 and Volha Shapaval 1 1 Faculty of Science and Technology, Norwegian University of Life Sciences, Drøbakveien 31, 1433 Ås, Norway; [email protected] (B.Z.); [email protected] (A.K.); [email protected] (B.X.D.–G.); [email protected] (V.S.) 2 Department of Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark; [email protected] 3 Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark; [email protected] 4 Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Christian Magnus Falsens vei 1, 1433 Ås, Norway; [email protected] (S.L.); [email protected] (S.J.H.) * Correspondence: [email protected] or [email protected] Abstract: Calcium controls important processes in fungal metabolism, such as hyphae growth, cell wall synthesis, and stress tolerance. Recently, it was reported that calcium affects polyphosphate and lipid accumulation in fungi. The purpose of this study was to assess the effect of calcium on the accumulation of lipids and polyphosphate for six oleaginous Mucoromycota fungi grown under different phosphorus/pH conditions. A Duetz microtiter plate system (Duetz MTPS) was used for the cultivation. The compositional profile of the microbial biomass was recorded using Fourier-transform infrared spectroscopy, the high throughput screening extension (FTIR-HTS). -
Characterization of Two Undescribed Mucoralean Species with Specific
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 26 March 2018 doi:10.20944/preprints201803.0204.v1 1 Article 2 Characterization of Two Undescribed Mucoralean 3 Species with Specific Habitats in Korea 4 Seo Hee Lee, Thuong T. T. Nguyen and Hyang Burm Lee* 5 Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture and Life Sciences, 6 Chonnam National University, Gwangju 61186, Korea; [email protected] (S.H.L.); 7 [email protected] (T.T.T.N.) 8 * Correspondence: [email protected]; Tel.: +82-(0)62-530-2136 9 10 Abstract: The order Mucorales, the largest in number of species within the Mucoromycotina, 11 comprises typically fast-growing saprotrophic fungi. During a study of the fungal diversity of 12 undiscovered taxa in Korea, two mucoralean strains, CNUFC-GWD3-9 and CNUFC-EGF1-4, were 13 isolated from specific habitats including freshwater and fecal samples, respectively, in Korea. The 14 strains were analyzed both for morphology and phylogeny based on the internal transcribed 15 spacer (ITS) and large subunit (LSU) of 28S ribosomal DNA regions. On the basis of their 16 morphological characteristics and sequence analyses, isolates CNUFC-GWD3-9 and CNUFC- 17 EGF1-4 were confirmed to be Gilbertella persicaria and Pilobolus crystallinus, respectively.To the 18 best of our knowledge, there are no published literature records of these two genera in Korea. 19 Keywords: Gilbertella persicaria; Pilobolus crystallinus; mucoralean fungi; phylogeny; morphology; 20 undiscovered taxa 21 22 1. Introduction 23 Previously, taxa of the former phylum Zygomycota were distributed among the phylum 24 Glomeromycota and four subphyla incertae sedis, including Mucoromycotina, Kickxellomycotina, 25 Zoopagomycotina, and Entomophthoromycotina [1]. -
Bitter Rot of Apples
Bitter Rot of Apples: Recent Changes in What We Know and Implications for Disease Management (A review of recent literature and perspectives on what we still need to learn) Compiled for a presentation at the Cumberland-Shenandoah Fruit Workers Conference in Winchester, VA, December 1-2, 2016 Dave Rosenberger, Plant Pathologist and Professor Emeritus Cornell’s Hudson Valley Lab, Highland, NY Apple growers, private consultants, and extension specialists have all noted that bitter rot is increasingly common and is causing sporadic but economically significant losses throughout the northeastern and north central apple growing regions of North America. Forty years ago, bitter rot was considered a “southern disease” and apples with bitter rot were rarely observed in northern production regions. Four factors have probably contributed to the increasing incidence of bitter rot in these regions. First, as a result of global warming, we have more days during summer with warm wetting events that are essential for initiating bitter rot infections and perhaps for increasing inoculum within orchards before the bitter rot pathogens move to apple fruit. Second, some new cultivars (e.g., Honeycrisp) are very susceptible to infection. Third, we are also growing more late-maturing cultivars such as Cripps Pink that may be picked in early November, and these cultivars may need additional fungicide sprays during September and/or early October if they are to be fully protected from bitter rot. Finally, mancozeb fungicides are very effective against Colletotrichum species, and the season-long use of mancozeb may have suppressed Colletotrichum populations in apple orchards prior to 1990 when the mancozeb labels were changed to prohibit applications during summer (i.e., within 77 days of harvest). -
Fungal Evolution: Major Ecological Adaptations and Evolutionary Transitions
Biol. Rev. (2019), pp. 000–000. 1 doi: 10.1111/brv.12510 Fungal evolution: major ecological adaptations and evolutionary transitions Miguel A. Naranjo-Ortiz1 and Toni Gabaldon´ 1,2,3∗ 1Department of Genomics and Bioinformatics, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain 2 Department of Experimental and Health Sciences, Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain 3ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain ABSTRACT Fungi are a highly diverse group of heterotrophic eukaryotes characterized by the absence of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from rare, part of the evolutionary success of the group resides in their ability to grow indefinitely as a cylindrical multinucleated cell (hypha). Armed with these morphological traits and with an extremely high metabolical diversity, fungi have conquered numerous ecological niches and have shaped a whole world of interactions with other living organisms. Herein we survey the main evolutionary and ecological processes that have guided fungal diversity. We will first review the ecology and evolution of the zoosporic lineages and the process of terrestrialization, as one of the major evolutionary transitions in this kingdom. Several plausible scenarios have been proposed for fungal terrestralization and we here propose a new scenario, which considers icy environments as a transitory niche between water and emerged land. We then focus on exploring the main ecological relationships of Fungi with other organisms (other fungi, protozoans, animals and plants), as well as the origin of adaptations to certain specialized ecological niches within the group (lichens, black fungi and yeasts). -
Study of Soil Fungi in the Territory of Kapan City and Its Surrounding
PROCEEDINGS OF THE YEREVAN STATE UNIVERSITY C h e m i s t r y a n d B i o l o g y 2018, 52(3), p. 193–197 Bi o l o g y STUDY OF SOIL FUNGI IN THE TERRITORY OF KAPAN CITY AND ITS SURROUNDING R. E. MATEVOSYAN , S. G. NANAGULYAN **, I. M. ELOYAN, T. A. YESAYAN Chair of Botany and Mycology YSU, Armenia During the studies of micromycetes-decomposers of Kapan City and its surrounding, 32 species of fungi were detected, 8 of which belong to Zygomycetes and 24 belong to Ascomycetes classes. In the studied soils there were widespread species of genus Penicillium (9), Aspergillus (8) and representatives of mucoral fungi (8 species). Keywords: soil fungi, micromycetes, dilution method, contaminated territory. Introduction. Fungi are very important organisms in terrestrial ecosystem function. Micromycetes-decomposers, which are found in the soil, in a large number, and diverse species are active components of biogenocenosis. The negative impact on the environment of Armenia is extended by air emission of a number of industrial enterprises, the technological processes of which where developed out of the view of their conservation. As a result, various toxic chemicals settle on the soil. The mycelium of soil fungi absorbs nutrients from the roots it has colonized, surface organic matter or from the soil. From this point of view, it is of great interest to conduct mycological analysis of soils on the territories or surroundings of industrial factories with the aim of studying the effect of industrial wastes and emissions on the changes of the soil mycobiota. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Gut Mycobiota Alterations in Patients with COVID-19 and H1N1 Infections
ARTICLE https://doi.org/10.1038/s42003-021-02036-x OPEN Gut mycobiota alterations in patients with COVID- 19 and H1N1 infections and their associations with clinical features Longxian Lv1,3, Silan Gu1,3, Huiyong Jiang1,3, Ren Yan1,3, Yanfei Chen1,3, Yunbo Chen1, Rui Luo1, Chenjie Huang1, ✉ Haifeng Lu1, Beiwen Zheng1, Hua Zhang1, Jiafeng Xia1, Lingling Tang2, Guoping Sheng2 & Lanjuan Li 1 The relationship between gut microbes and COVID-19 or H1N1 infections is not fully understood. Here, we compared the gut mycobiota of 67 COVID-19 patients, 35 H1N1- infected patients and 48 healthy controls (HCs) using internal transcribed spacer (ITS) 3- 1234567890():,; ITS4 sequencing and analysed their associations with clinical features and the bacterial microbiota. Compared to HCs, the fungal burden was higher. Fungal mycobiota dysbiosis in both COVID-19 and H1N1-infected patients was mainly characterized by the depletion of fungi such as Aspergillus and Penicillium, but several fungi, including Candida glabrata, were enriched in H1N1-infected patients. The gut mycobiota profiles in COVID-19 patients with mild and severe symptoms were similar. Hospitalization had no apparent additional effects. In COVID-19 patients, Mucoromycota was positively correlated with Fusicatenibacter, Aspergillus niger was positively correlated with diarrhoea, and Penicillium citrinum was negatively corre- lated with C-reactive protein (CRP). In H1N1-infected patients, Aspergillus penicilloides was positively correlated with Lachnospiraceae members, Aspergillus was positively correlated with CRP, and Mucoromycota was negatively correlated with procalcitonin. Therefore, gut mycobiota dysbiosis occurs in both COVID-19 patients and H1N1-infected patients and does not improve until the patients are discharged and no longer require medical attention. -
Microbial Community Structure in Rice, Crops, and Pastures Rotation Systems with Different Intensification Levels in the Temperate Region of Uruguay
Supplementary Material Microbial community structure in rice, crops, and pastures rotation systems with different intensification levels in the temperate region of Uruguay Sebastián Martínez Table S1. Relative abundance of the 20 most abundant bacterial taxa of classified sequences. Relative Taxa Phylum abundance 4,90 _Bacillus Firmicutes 3,21 _Bacillus aryabhattai Firmicutes 2,76 _uncultured Prosthecobacter sp. Verrucomicrobia 2,75 _uncultured Conexibacteraceae bacterium Actinobacteria 2,64 _uncultured Conexibacter sp. Actinobacteria 2,14 _Nocardioides sp. Actinobacteria 2,13 _Acidothermus Actinobacteria 1,50 _Bradyrhizobium Proteobacteria 1,23 _Bacillus Firmicutes 1,10 _Pseudolabrys_uncultured bacterium Proteobacteria 1,03 _Bacillus Firmicutes 1,02 _Nocardioidaceae Actinobacteria 0,99 _Candidatus Solibacter Acidobacteria 0,97 _uncultured Sphingomonadaceae bacterium Proteobacteria 0,94 _Streptomyces Actinobacteria 0,91 _Terrabacter_uncultured bacterium Actinobacteria 0,81 _Mycobacterium Actinobacteria 0,81 _uncultured Rubrobacteria Actinobacteria 0,77 _Xanthobacteraceae_uncultured forest soil bacterium Proteobacteria 0,76 _Streptomyces Actinobacteria Table S2. Relative abundance of the 20 most abundant fungal taxa of classified sequences. Relative Taxa Orden abundance. 20,99 _Fusarium oxysporum Ascomycota 11,97 _Aspergillaceae Ascomycota 11,14 _Chaetomium globosum Ascomycota 10,03 _Fungi 5,40 _Cucurbitariaceae; uncultured fungus Ascomycota 5,29 _Talaromyces purpureogenus Ascomycota 3,87 _Neophaeosphaeria; uncultured fungus Ascomycota -
Introduced and Indigenous Fungi of the Ross Island Historic Huts and Pristine Areas of Antarctica
Polar Biol DOI 10.1007/s00300-011-1060-8 ORIGINAL PAPER Introduced and indigenous fungi of the Ross Island historic huts and pristine areas of Antarctica R. L. Farrell • B. E. Arenz • S. M. Duncan • B. W. Held • J. A. Jurgens • R. A. Blanchette Received: 12 February 2011 / Revised: 20 June 2011 / Accepted: 29 June 2011 Ó Springer-Verlag 2011 Abstract This review summarizes research concerning historic sites, and one historic site showed noticeably higher Antarctic fungi at the century-old historic huts of the Heroic diversity, which led to the conclusion that this is a variable Period of exploration in the Ross Dependency 1898–1917 that should not be generalized. Cultured fungi were cold and fungi in pristine terrestrial locations. The motivation of active, and the broader scientific significance of this finding the research was initially to identify potential fungal causes was that climate change (warming) may not adversely affect of degradation of the historic huts and artifacts. The these fungal species unless they were out-competed by new research was extended to study fungal presence at pristine arrivals or unfavorable changes in ecosystem domination sites for comparison purposes and to consider the role of occur. fungi in the respective ecosystems. We employed classical microbiology for isolation of viable organisms, and culture- Keywords Terrestrial Á Climate change Á Biodiversity Á independent DNA analyses. The research provided baseline Adaptation data on microbial biodiversity. Principal findings were that there is significant overlap of the yeasts and filamentous fungi isolated from the historic sites, soil, and historic- Introduction introduced materials (i.e., wood, foodstuffs) and isolated from environmental samples in pristine locations. -
Fungal Pathogenesis in Humans the Growing Threat
Fungal Pathogenesis in Humans The Growing Threat Edited by Fernando Leal Printed Edition of the Special Issue Published in Genes www.mdpi.com/journal/genes Fungal Pathogenesis in Humans Fungal Pathogenesis in Humans The Growing Threat Special Issue Editor Fernando Leal MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade Special Issue Editor Fernando Leal Instituto de Biolog´ıa Funcional y Genomica/Universidad´ de Salamanca Spain Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Genes (ISSN 2073-4425) from 2018 to 2019 (available at: https://www.mdpi.com/journal/genes/special issues/Fungal Pathogenesis Humans Growing Threat). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03897-900-5 (Pbk) ISBN 978-3-03897-901-2 (PDF) Cover image courtesy of Fernando Leal. c 2019 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Special Issue Editor ...................................... vii Fernando Leal Special Issue: Fungal Pathogenesis in Humans: The Growing Threat Reprinted from: Genes 2019, 10, 136, doi:10.3390/genes10020136 .................. -
Genomic and Fossil Windows Into the Secret Lives of the Most Ancient Fungi
REVIEWS Genomic and fossil windows into the secret lives of the most ancient fungi Mary L. Berbee 1 ✉ , Christine Strullu- Derrien 2,3, Pierre- Marc Delaux 4, Paul K. Strother5, Paul Kenrick 2, Marc- André Selosse 3,6 and John W. Taylor 7 Abstract | Fungi have crucial roles in modern ecosystems as decomposers and pathogens, and they engage in various mutualistic associations with other organisms, especially plants. They have a lengthy geological history, and there is an emerging understanding of their impact on the evolution of Earth systems on a large scale. In this Review, we focus on the roles of fungi in the establishment and early evolution of land and freshwater ecosystems. Today, questions of evolution over deep time are informed by discoveries of new fossils and evolutionary analysis of new genomes. Inferences can be drawn from evolutionary analysis by comparing the genes and genomes of fungi with the biochemistry and development of their plant and algal hosts. We then contrast this emerging picture against evidence from the fossil record to develop a new, integrated perspective on the origin and early evolution of fungi. Fungi are crucial for thriving land plant communities as enzymes surely kept pace3,16,17. Comparative analy- mycorrhizal symbionts1,2 and decomposers3. For perhaps sis of genomes of land plants18 and their closest algal 500 million years4,5, fungi have been supplying land plants relatives19,20 reveals the evolutionary origins of constitu- with phosphorus and other minerals, thereby speeding ents of plant immune systems that are fundamental both up photosynthesis and contributing to the drawdown for defence against fungal parasites and for the evolution 6–8 mycorrhizae21 1Department of Botany, of atmospheric carbon dioxide . -
<I>Cryptosporiopsis Ericae</I>
MYCOTAXON Volume 112, pp. 457–461 April–June 2010 Cadophora malorum and Cryptosporiopsis ericae isolated from medicinal plants of the Orchidaceae in China Juan Chen, Hai-Ling Dong, Zhi-Xia Meng & Shun-Xing Guo* [email protected] Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, & Peking Union Medical College Beijing 100194, P. R. China Abstract —Two species in the anamorphic genera Cadophora and Cryptosporiopsis are newly recorded as endophytes from medicinal plants of the Orchidaceae in China. Cadophora malorum was isolated from a stem of Bletilla striata in Hubei Province, and Cryptosporiopsis ericae from a root of Spiranthes sinensis in Tibet. These are the first records of these fungi from plants of the Orchidaceae. Key words — endophytic fungi, taxonomy Introduction Orchids are unique among plants in their modes of nutrition (myco- heterotrophy) involving direct and often obligate relationships with fungi (Leake 1994). Thus, fungi are critical for an orchid’s growth and development. Orchid mycorrhizas have been historically regarded as the third distinct structural lineage of mycorrhizas in addition to ecto-related and arbuscular mycorrhizas (Imhof 2009). Recently, non-mycorrhizal endophytic fungi associated with orchids have been shown to serve as potential growth promoters and source of bioactivity substances (Guo & Wang 2001), implying further application in the fields of cultivation and natural medicine. During a survey of endophytic fungi associated with traditional medicinal plants of Bletilla striata (Thunb.) Rchb.f. and Spiranthes sinensis (Pers.) Ames (Orchidaceae) in China, Cadophora malorum and Cryptosporiopsis ericae were isolated from plant tissues. These are the first records of these anamorphic species from orchids.