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Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes Author(S): Srikar Chamala, Nicolás García, Grant T
MarkerMiner 1.0: A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes Author(s): Srikar Chamala, Nicolás García, Grant T. Godden, Vivek Krishnakumar, Ingrid E. Jordon- Thaden, Riet De Smet, W. Brad Barbazuk, Douglas E. Soltis, and Pamela S. Soltis Source: Applications in Plant Sciences, 3(4) Published By: Botanical Society of America DOI: http://dx.doi.org/10.3732/apps.1400115 URL: http://www.bioone.org/doi/full/10.3732/apps.1400115 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. ApApplicatitionsons Applications in Plant Sciences 2015 3 ( 4 ): 1400115 inin PlPlant ScienSciencesces S OFTWARE NOTE M ARKERMINER 1.0: A NEW APPLICATION FOR PHYLOGENETIC 1 MARKER DEVELOPMENT USING ANGIOSPERM TRANSCRIPTOMES S RIKAR C HAMALA 2,12 , N ICOLÁS G ARCÍA 2,3,4 * , GRANT T . G ODDEN 2,3,5 * , V IVEK K RISHNAKUMAR 6 , I NGRID E. -
Cucurbitaceae”
1 UF/IFAS EXTENSION SARASOTA COUNTY • A partnership between Sarasota County, the University of Florida, and the USDA. • Our Mission is to translate research into community initiatives, classes, and volunteer opportunities related to five core areas: • Agriculture; • Lawn and Garden; • Natural Resources and Sustainability; • Nutrition and Healthy Living; and • Youth Development -- 4-H What is Sarasota Extension? Meet The Plant “Cucurbitaceae” (Natural & Cultural History of Cucurbits or Gourd Family) Robert Kluson, Ph.D. Ag/NR Ext. Agent, UF/IFAS Extension Sarasota Co. 4 OUTLINE Overview of “Meet The Plant” Series Introduction to Cucubitaceae Family • What’s In A Name? Natural History • Center of origin • Botany • Phytochemistry Cultural History • Food and other uses 5 Approach of Talks on “Meet The Plant” Today my talk at this workshop is part of a series of presentations intended to expand the awareness and familiarity of the general public with different worldwide and Florida crops. It’s not focused on crop production. Provide background information from the sciences of the natural and cultural history of crops from different plant families. • 6 “Meet The Plant” Series Titles (2018) Brassicaceae Jan 16th Cannabaceae Jan 23rd Leguminaceae Feb 26th Solanaceae Mar 26th Cucurbitaceae May 3rd 7 What’s In A Name? Cucurbitaceae the Cucurbitaceae family is also known as the cucurbit or gourd family. a moderately size plant family consisting of about 965 species in around 95 genera - the most important for crops of which are: • Cucurbita – squash, pumpkin, zucchini, some gourds • Lagenaria – calabash, and others that are inedible • Citrullus – watermelon (C. lanatus, C. colocynthis) and others • Cucumis – cucumber (C. -
Nematicidal and Antimicrobial Evaluation of Extracts, Nanosized Materials, and Fractions, of Selected Plants, and the Identification of the Bioactive Phytochemicals
Nematicidal and antimicrobial evaluation of extracts, nanosized materials, and fractions, of selected plants, and the identification of the bioactive phytochemicals Dissertation zur Erlangung des Grades des Doktors der Naturwissenschaften der Naturwissenschaftlich-Technischen Fakultät der Universität des Saarlandes von Adel Al-Marby July Saarbrücken 2017 Tag des Kolloquiums: 14-07-2017 Dekan: Prof. Dr. rer. nat. Guido Kickelbick Prüfungsvorsitzender: Prof. Dr. Ingolf Bernhardt Berichterstatter: Prof. Dr. Claus Jacob Prof. Dr.Thorsten Lehr Akad. Mitarbeiter: Dr. Aravind Pasula i Diese Dissertation wurde in der Zeit von Februar 2014 bis Februar 2017 unter Anleitung von Prof. Dr. Claus Jacob im Arbeitskreis für Bioorganische Chemie, Fachrichtung Pharmazie der Universität des Saarlandes durchgeführt. Bei Herr Prof. Dr. Claus Jacob möchte ich mich für die Überlassung des Themas und die wertvollen Anregungen und Diskussionen herzlich bedanken ii Erklärung Ich erkläre hiermit an Eides statt, dass ich die vorliegende Arbeit selbständig und ohne unerlaubte fremde Hilfe angefertigt, andere als die angegebenen Quellen und Hilfsmittel nicht benutzt habe. Die aus fremden Quellen direkt oder indirekt übernommenen Stellen sind als solche kenntlich gemacht. Die Arbeit wurde bisher in gleicher oder ähnlicher Form keinem anderen Prüfungsamt vorgelegt und auch nicht veröffentlicht. Saarbruecken, Datum aA (Unterschrift) iii Dedicated to My Beloved Family iv Table of Contents Table of Contents Erklärung .................................................................................................................................................... -
Developmental Biology of Exacum Styer Group
DEVELOPMENTAL BIOLOGY OF EXACUM STYER GROUP POLLEN AS RELATED TO HAPLOID INDUCTION by TSAN-YU CHIU BSc. (Horticultural Science), Taiwan, 2003 A THESIS SUBMITTED IN PARTIAL FULLFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE in The FACULTY OF GRADUATE STUDIES (Plant Science) The University of British Columbia August, 2006 © Tsan-Yu Chiu, 2006 ABSTRACT Exacum Styer Group, a group of interspecific hybrids, possesses several valuable traits for ornamental use. However, current production techniques are limited to asexual reproduction of selected genotypes. Typically, inbred line development is highly desirable for commercial introduction of Fl hybrids as well as to facilitate genetic research. Unfortunately, this group suffers from severe inbreeding depression, precluding sexually derived inbred lines. In order to avoid inbreeding depression, double haploid plant development is one alternative approach. Therefore, this research developed fundamental information related to the successful application of this technology. Initially, fourteen genotypes were evaluated for pollen viability ranging from 0% to 80.5%. Three genotypes, with different levels of pollen viability, were selected and characterized for microsporogenesis, microgametogenesis, pollen morphology, and chromosome number. Microsporogenesis was normal among all three selected genotypes. However, the low fertility genotype and sterile genotype did not complete normal microgametogenesis and were found to have abnormal exine structure, perhaps indicating a dysfunctional tapetum layer. In contrast, the fertile genotype completed microgametogenesis, produced normal exine, and produced functional pollen grains. At anthesis, pollen was shed at the bi-nucleate stage. The chromosome numbers of the three genotypes evaluated ranged from 50 (fertile genotype) to 66 (low pollen viability). The individual chromosomes ranged in size from 0.3 um (dot-shaped) to 2.65 um (rod-shaped) with all three genotypes containing each form. -
Age Structure and Growth of Dracaena Cinnabari Populations on Socotra
Trees (2004) 18:43–53 DOI 10.1007/s00468-003-0279-6 ORIGINAL ARTICLE Radim Adolt · Jindrich Pavlis Age structure and growth of Dracaena cinnabari populations on Socotra Received: 10 January 2003 / Accepted: 28 May 2003 / Published online: 26 July 2003 Springer-Verlag 2003 Abstract Unique Dracaena cinnabari woodlands on blood resin is available (Himmelreich et al. 1995; Socotra Island—relics of the Mio-Pliocene xerophile- Vachalkova et al. 1995), too few studies on growth sclerophyllous southern Tethys Flora—were examined in dynamic, phenology and ageing of arborescent Dracaena detail, especially with regard to their age structure. sp. have been implemented. Detailed statistical analyses of sets of 50 trees at four The age of fabulous dragon trees is thus still generally localities were performed in order to define a model clouded in overestimation by Humboldt (1814) who reflecting relationships between specific growth habit and hypothesized that a huge Dracaena draco with 15 m stem actual age. The problematic nature of determining the age girth from Orotava, Tenerife was several thousand years of an individual tree or specific populations of D. old. A more probable average figure of up to 700 years cinnabari is illustrated by three models relating to orders old was suggested by Bystrm (1960). However, later of branching, frequency of fruiting, etc. which allow the observations by Symon (1974) and Magdefrau (1975) actual tree age to be calculated. Based on statistical brought both a precise record of the age of cultivated trees analyses as well as direct field observations, D. cinnabari and also the first clues on determination of ageing. -
Exacum Paucisquamum (C.B
Taiwania, 57(3): 300-304, 2012 NOTE Exacum paucisquamum (C.B. Clarke) Klack. - a New Record of Mycoheterotroph (Gentianaceae) to the Flora of Hong Kong Paul Pui-Hay But(1*), Ming Li(2), Mathew Siu-Ming Wan(1) and Yiu-Man Chan(1) 1. School of Life Sciences, The Chinese University of Hong Kong (CUHK), 48-52 Tai Po Road, Shatin, N.T., Hong Kong, P.R. China. 2. State Key Laboratory of Phytochemistry and Plant Resources in West China, Institute of Chinese Medicine, The Chinese University of Hong Kong, 48-52 Tai Po Road, Shatin, N.T., Hong Kong, P.R. China. * Corresponding author. Tel: +852-9366-0328; Email: [email protected] Dedicated to Prof Shiu-Ying Hu (1910-2012) (Manuscript received 3 Febuary 2012; accepted 10 May 2012) ABSTRACT: A mycoheterotroph was found growing on Tai Mo Shan. Morphological characters and DNA sequence of the ITS region confirmed that it is Exacum paucisquamum (Gentianaceae). It is a new record to Hong Kong and also a new low altitude and the southern-most range of its distribution in China. KEY WORDS: Cotylanthera paucisquama, Exacum paucisquamum, Gentianaceae, Hong Kong, mycoheterotroph, taxonomy. INTRODUCTION min (White et al., 1990). The amplicons were purified TM using Gel-M Gel extraction system (Viogene) before Gentianaceae is a big dicotyledonous family of 87 bidirectional DNA sequencing performed in BGI-Hong genera and about 1,650 species, which are distributed Kong. The DNA sequence was deposited in GenBank. mainly in temperate regions and high altitudes (Struwe A total of 115 ITS sequences of species in the tribe et al., 2002). -
Dispersal Events the Gourd Family (Cucurbitaceae) and Numerous Oversea Gourds Afloat: a Dated Phylogeny Reveals an Asian Origin
Downloaded from rspb.royalsocietypublishing.org on 8 March 2009 Gourds afloat: a dated phylogeny reveals an Asian origin of the gourd family (Cucurbitaceae) and numerous oversea dispersal events Hanno Schaefer, Christoph Heibl and Susanne S Renner Proc. R. Soc. B 2009 276, 843-851 doi: 10.1098/rspb.2008.1447 Supplementary data "Data Supplement" http://rspb.royalsocietypublishing.org/content/suppl/2009/02/20/276.1658.843.DC1.ht ml References This article cites 35 articles, 9 of which can be accessed free http://rspb.royalsocietypublishing.org/content/276/1658/843.full.html#ref-list-1 Subject collections Articles on similar topics can be found in the following collections taxonomy and systematics (58 articles) ecology (380 articles) evolution (450 articles) Email alerting service Receive free email alerts when new articles cite this article - sign up in the box at the top right-hand corner of the article or click here To subscribe to Proc. R. Soc. B go to: http://rspb.royalsocietypublishing.org/subscriptions This journal is © 2009 The Royal Society Downloaded from rspb.royalsocietypublishing.org on 8 March 2009 Proc. R. Soc. B (2009) 276, 843–851 doi:10.1098/rspb.2008.1447 Published online 25 November 2008 Gourds afloat: a dated phylogeny reveals an Asian origin of the gourd family (Cucurbitaceae) and numerous oversea dispersal events Hanno Schaefer*, Christoph Heibl and Susanne S. Renner Systematic Botany, University of Munich, Menzinger Strasse 67, 80638 Munich, Germany Knowing the geographical origin of economically important plants is important for genetic improvement and conservation, but has been slowed by uneven geographical sampling where relatives occur in remote areas of difficult access. -
Punica Granatum L.): Features and Medicinal Properties—A Review
plants Review Punica protopunica Balf., the Forgotten Sister of the Common Pomegranate (Punica granatum L.): Features and Medicinal Properties—A Review José Antonio Guerrero-Solano 1 , Osmar Antonio Jaramillo-Morales 2,* , Tania Jiménez-Cabrera 1, Thania Alejandra Urrutia-Hernández 3, Alejandro Chehue-Romero 1, Elena G. Olvera-Hernández 1 and Mirandeli Bautista 1,* 1 Academic Area of Pharmacy, Institute of Health Sciences, Autonomous University of the State of Hidalgo, San Agustin Tlaxiaca, Hidalgo 42160, Mexico; [email protected] (J.A.G.-S.); [email protected] (T.J.-C.); [email protected] (A.C.-R.); [email protected] (E.G.O.-H.) 2 Department of Nursing and Obstetrics, Division of Life Sciences, University of Guanajuato, Ex Hacienda el Copal Km 9 Irapuato-Silao highway ap 311, Irapuato, Guanajuato 36500, Mexico 3 Academic Area of Food Chemistry, Institute of Basic Sciences and Engineering, Autonomous University of the State of Hidalgo, Pachuca-Tulancingo km 4.5 Carboneras, Pachuca de Soto, Hidalgo 42184, Mexico; [email protected] * Correspondence: [email protected] (O.A.J.-M.); [email protected] (M.B.) Received: 1 September 2020; Accepted: 12 September 2020; Published: 16 September 2020 Abstract: Punica protopunica Balf. is one of only two species housed by the Punica genera. Punica protopunica. Balf., known as Socotran pomegranate, is an endemic, isolated species found only in Socotra archipelago in the northwestern Indian Ocean, and is considered to be the ancestor of pomegranate. This review stems from the fact that in many Punica granatum L. articles, Punica protopunica Balf. is mentioned, but just in an informative way, without mentioning their taxonomic and genetic relationship and their medicinal properties. -
Seed Shape Quantification in the Order Cucurbitales
ISSN 2226-3063 e-ISSN 2227-9555 Modern Phytomorphology 12: 1–13, 2018 https://doi.org/10.5281/zenodo.1174871 RESEARCH ARTICLE Seed shape quantification in the order Cucurbitales Emilio Cervantes 1, 2*, José Javier Martín Gómez 1 1 Instituto de Recursos Naturales y Agrobiología de Salamanca-Consejo Superior de Investigaciones Científicas (IRNASA–CSIC), Cordel de Merinas 40, 37008 Salamanca, Spain; * [email protected] 2 Grupo de Investigación Reconocido Bases Moleculares del Desarrollo, Universidad de Salamanca (GIR BMD-USAL), Edificio Departamental, Campus Miguel de Unamuno, 37007 Salamanca, Spain Received: 03.10.2017 | Accepted: 23.01.2018 | Published: 17.02.2018 Abstract Seed shape quantification in diverse species of the families belonging to the order Cucurbitales is done based on the comparison of seed images with geometric figures. Quantification of seed shape is a useful tool in plant description for phenotypic characterization and taxonomic analysis. J index gives the percent of similarity of the image of a seed with a geometric figure and it is useful in taxonomy for the study of relationships between plant groups. Geometric figures used as models in the Cucurbitales are the ovoid, two ellipses with different x/y ratios and the outline of the Fibonacci spiral. The images of seeds have been compared with these figures and values of J index obtained. The results obtained for 29 species in the family Cucurbitaceae support a relationship between seed shape and species ecology. Simple seed shape, with images resembling simple geometric figures like the ovoid, ellipse or the Fibonacci spiral, may be a feature in the basal clades of taxonomic groups. -
Phylogenetic Relationships of Ibervillea and Tumamoca (Coniandreae, Cucurbita- Ceae), Two Genera of the Dry Lands of North America
Phytotaxa 201 (3): 197–206 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.201.3.3 Phylogenetic relationships of Ibervillea and Tumamoca (Coniandreae, Cucurbita- ceae), two genera of the dry lands of North America RAFAEL LIRA1*, VICTORIA SOSA2, TALITHA LEGASPI1 & PATRICIA DÁVILA1** 1Unidad de Biología, Tecnología y Prototipos (UBIPRO), Facultad de Estudios Superiores Iztacala, Universidad Nacional Autónoma de México; *email: [email protected]; **email: [email protected] 2Biología Evolutiva, Instituto de Ecología AC, Carretera antigua a Coatepec 351, El Haya, 91070 Xalapa, Veracruz, Mexico; email: [email protected] Abstract We examine the limits and phylogenetic relationships of Ibervillea and Tumamoca belonging to tribe Coniandreae in the Cucurbitaceae. These taxa are found in xeric areas from southern United States to Guatemala. There has been no previous phylogenetic studies considering all their taxa together, just partially. Furthermore, we include as well species of Dieterlea, another similar and sympatric genus which recognition is under debate, formerly considered as a synonym of Ibervillea. Using molecular and morphological characters we performed molecular and total evidence parsimony and Bayesian analyses. Our re- sults confirm that species in Ibervillea and Dieterlea are part of a monophyletic group, supporting the integration of both genera as proposed in previous phylogenetic and taxonomic studies. By examining all the species of the three genera, our results are the first to suggest that Tumamoca is also part of this monophyletic group. Therefore we propose that the species of Ibervillea, Dieterlea, and one species of Tumamoca should be included into the same genus. -
Overview of Biotope Types of Socotra Island
10.2478/jlecol-2014-0004 Journal of Landscape Ecology (2013), Vol: 6 / No. 3. OVERVIEW OF BIOTOPE TYPES OF SOCOTRA ISLAND HANA HABROVÁ AND ANTONÍN BUČEK Department of Forest Botany, Dendrology and Geobiocoenology, Mendel University in Brno, Zemědělská 3, 613 00 Brno, Czech Republic, e-mail: [email protected], [email protected] Received: 10th March 2014, Accepted: 18th April 2013 ABSTRACT The study describes main biotopes of Socotra Island. The biotopes were distinguished and described during complex field observations on more than 250 localities of Socotra between years 1999-2004. Classification of biotopes is based on differences in physiognomy, structure and species composition of the vegetation component of present biocoenoses. Groups of biotope types differ, above all, in the physiognomy and structure of vegetation. Biotope types are divided according to composition of dominant species. In this manner, 13 groups of biotopes and 39 biotope types were distinguished and described. Keywords: Socotra Island, biotope type classification, geobiocoenological approach INTRODUCTION The present condition of biotopes on the island of Socotra is the result of long-term activities of man on the landscape, particularly through cattle grazing. The structure and species composition of biotopes distinguish in relation to the type and intensity of anthropogenic impacts, which show different consequences in particular types of geobiocoenes with a range of permanent ecological conditions. There are various approaches to biotope classification (e.g. Chytrý et al., 2010; Pählsson, 2008). We utilised the geobiocoenological approach (Maděra, 1998), based on the comparison of the natural (potential) and current state of geobiocoenoses in the landscape. In differentiating the current state of geobiocoenoses in the landscape, a formation- physiognomical approach is used.