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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
Checklist of Serranid and Epinephelid Fishes (Perciformes: Serranidae & Epinephelidae) of India
Journal of the Ocean Science Foundation 2021, Volume 38 Checklist of serranid and epinephelid fishes (Perciformes: Serranidae & Epinephelidae) of India AKHILESH, K.V. 1, RAJAN, P.T. 2, VINEESH, N. 3, IDREESBABU, K.K. 4, BINEESH, K.K. 5, MUKTHA, M. 6, ANULEKSHMI, C. 1, MANJEBRAYAKATH, H. 7, GLADSTON, Y. 8 & NASHAD M. 9 1 ICAR-Central Marine Fisheries Research Institute, Mumbai Regional Station, Maharashtra, India. Corresponding author: [email protected]; Email: [email protected] 2 Andaman & Nicobar Regional Centre, Zoological Survey of India, Port Blair, India. Email: [email protected] 3 Department of Health & Family Welfare, Government of West Bengal, India. Email: [email protected] 4 Department of Science and Technology, U.T. of Lakshadweep, Kavaratti, India. Email: [email protected] 5 Southern Regional Centre, Zoological Survey of India, Chennai, Tamil Nadu, India. Email: [email protected] 6 ICAR-Central Marine Fisheries Research Institute, Visakhapatnam Regional Centre, Andhra Pradesh, India. Email: [email protected] 7 Centre for Marine Living Resources and Ecology, Kochi, Kerala, India. Email: [email protected] 8 ICAR-Central Island Agricultural Research Institute, Port Blair, Andaman and Nicobar Islands, India. Email: [email protected] 9 Fishery Survey of India, Port Blair, Andaman and Nicobar Islands, 744101, India. Email: [email protected] Abstract We provide an updated checklist of fishes of the families Serranidae and Epinephelidae reported or listed from India, along with photographs. A total of 120 fishes in this group are listed as occurring in India based on published literature, of which 25 require further confirmation and validation. We confirm here the presence of at least 95 species in 22 genera occurring in Indian marine waters. -
Cirrhitidae 3321
click for previous page Perciformes: Percoidei: Cirrhitidae 3321 CIRRHITIDAE Hawkfishes by J.E. Randall iagnostic characters: Oblong fishes (size to about 30 cm), body depth 2 to 4.6 times in standard Dlength. A fringe of cirri on posterior edge of anterior nostril. Two indistinct spines on opercle. A row of canine teeth in jaws, the longest usually anteriorly in upper jaw and half-way back on lower jaw; a band of villiform teeth inside the canines, broader anteriorly (in lower jaw only anteriorly). One or more cirri projecting from tips of interspinous membranes of dorsal fin. Dorsal fin continuous, with X spines and 11 to 17 soft rays, notched between spinous and soft portions; anal fin with III spines and 5 to 7 (usually 6) soft rays; pectoral fins with 14 rays, the lower 5 to 7 rays unbranched and usually enlarged, with the membranes deeply incised; pelvic fins with I spine and 5 soft rays. Principal caudal-fin rays 15. Branchiostegal rays 6. Scales cycloid. Swimbladder absent. Vertebrae 26. Colour: variable with species. cirri lower pectoral-fin rays thickened and unbranched Remarks: The hawkfish family consists of 10 genera and 38 species, 33 of which occur in the Indo-Pacific region; 19 species are found in the Western Central Pacific. Habitat, biology, and fisheries: Cirrhitids are bottom-dwelling fishes of coral reefs or rocky substrata; the majority occur in shallow water. They use their thickened lower pectoral-fin rays to wedge themselves in position in areas subject to surge. All species are carnivorous, feeding mainly on benthic crustaceans. -
Mediterranean Marine Science
Mediterranean Marine Science Vol. 18, 2017 “New Mediterranean Biodiversity Records” (March 2017) LIPEJ L. Marine Biology Station, National Institute of Biology, Fornače 61, 6630 Piran ACEVEDO I. Museo Nacional de Ciencias Naturales (MNCN-CSIC), José Gutiérrez Abascal, 2, 28006 Madrid AKEL E.H.K. Fishery Biology Lab, National Institute of Oceanography and Fisheries Kait-Bey, Alexandria ANASTASOPOULOU A. Hellenic Center of Marine Research, 46.7 km Athens Sounio ave., P.O. Box 712, 19013 Anavyssos ANGELIDIS A. Kapetan Vangeli 5, 54646 Thessaloniki AZZURRO E. Institute for Environmental Protection and Research (ISPRA), STS Livorno, Piazzale dei Marmi 2, 57123, Livorno CASTRIOTA L. Institute for Environmental Protection and Research, ISPRA,Via S. Puglisi 9, STS- Palermo, 90143 Palermo ÇELIK M. Faculty of Fisheries, Muğla Sıtkı Koçman University, 48000, Kötekli, Muğla CILENTI L. C.N.R. – ISMAR, UOS Lesina, Via Pola, 4 – 71010 Lesina (FG) CROCETTA F. Hellenic Center of Marine Research, 46.7 km Athens Sounio ave., P.O. Box 712, 19013 Anavyssos DEIDUN A. Department of Geosciences, University of Malta, Msida MSD 2080 DOGRAMMATZI A. Hellenic Center of Marine Research, 46.7 km Athens Sounio ave., P.O. Box 712, 19013 Anavyssos FALAUTANO M. Institute for Environmental http://epublishing.ekt.gr | e-Publisher: EKT | Downloaded at 21/02/2020 06:27:07 | Protection and Research, ISPRA,Via S. Puglisi 9, STS- Palermo, 90143 Palermo FERNÁNDEZ-ÁLVAREZ Institut de Ciències del Mar F.Á. (CSIC), Passeig Maritim 37–49, 08003 Barcelona GENNAIO R. Regional Agency for Environmental Protection (ARPA) Puglia, Lecce Department, Via Miglietta 1, 73100, Lecce INSACCO G. Museo Civico di Storia Naturale, via degli Studi 9, 97013 Comiso (RG) KATSANEVAKIS S. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Phylogeny of the Epinephelinae (Teleostei: Serranidae)
BULLETIN OF MARINE SCIENCE, 52(1): 240-283, 1993 PHYLOGENY OF THE EPINEPHELINAE (TELEOSTEI: SERRANIDAE) Carole C. Baldwin and G. David Johnson ABSTRACT Relationships among epinepheline genera are investigated based on cladistic analysis of larval and adult morphology. Five monophyletic tribes are delineated, and relationships among tribes and among genera of the tribe Grammistini are hypothesized. Generic com- position of tribes differs from Johnson's (1983) classification only in the allocation of Je- boehlkia to the tribe Grammistini rather than the Liopropomini. Despite the presence of the skin toxin grammistin in the Diploprionini and Grammistini, we consider the latter to be the sister group of the Liopropomini. This hypothesis is based, in part, on previously un- recognized larval features. Larval morphology also provides evidence of monophyly of the subfamily Epinephelinae, the clade comprising all epinepheline tribes except Niphonini, and the tribe Grammistini. Larval features provide the only evidence of a monophyletic Epine- phelini and a monophyletic clade comprising the Diploprionini, Liopropomini and Gram- mistini; identification of larvae of more epinephelines is needed to test those hypotheses. Within the tribe Grammistini, we propose that Jeboehlkia gladifer is the sister group of a natural assemblage comprising the former pseudogrammid genera (Aporops, Pseudogramma and Suttonia). The "soapfishes" (Grammistes, Grammistops, Pogonoperca and Rypticus) are not monophyletic, but form a series of sequential sister groups to Jeboehlkia, Aporops, Pseu- dogramma and Suttonia (the closest of these being Grammistops, followed by Rypticus, then Grammistes plus Pogonoperca). The absence in adult Jeboehlkia of several derived features shared by Grammistops, Aporops, Pseudogramma and Suttonia is incongruous with our hypothesis but may be attributable to paedomorphosis. -
Redalyc.First Record of the Dusky Grouper Epinephelus Marginatus
Hidrobiológica ISSN: 0188-8897 [email protected] Universidad Autónoma Metropolitana Unidad Iztapalapa México Vinicius Condin, Mario; Seyboth, Elisa; Paes Vieira, João; Varela-Jr, Antônio Sergio; Pedro Barreiros, João; Favaro, Luís Fernando; Miranda Garcia, Alexandre First record of the dusky grouper Epinephelus marginatus (Actinopterygii: Epinephelidae) undergoing sexual transition in the South Western Atlantic, Brazil Hidrobiológica, vol. 23, núm. 3, 2013, pp. 446-449 Universidad Autónoma Metropolitana Unidad Iztapalapa Distrito Federal, México Available in: http://www.redalyc.org/articulo.oa?id=57832087020 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative 446 Hidrobiológica 2013, 23 (3): 446-449 NOTAS DiciembreNotas 2013 First record of the dusky grouper Epinephelus marginatus (Actinopterygii: Epinephelidae) undergoing sexual transition in the South Western Atlantic, Brazil Primer registro del mero Epinephelus marginatus (Actinopterygii: Epinephelidae) en transición sexual en el Atlántico Sudoccidental, Brasil Mario Vinicius Condini1, Elisa Seyboth1, João Paes Vieira1, Antônio Sergio Varela-Jr.2, João Pedro Barreiros3, Luís Fernando Favaro4 and Alexandre Miranda Garcia1 1 Universidade Federal do Rio Grande, Instituto de Oceanografia, Laboratório de Ictiologia, 474, CEP 96.201-900, Rio Grande, RS, Brasil 2 Universidade Federal do Rio Grande, Instituto de Ciências Biológicas, Laboratório de Histologia, CEP 96.201-900, Rio Grande, RS, Brasil 3 Universidade dos Açores, Departamento de Ciências Agrárias and Azorean Biodiversity Group (CITA-A), 9701-851 Angra do Heroísmo, Portugal 4 Universidade Federal do Paraná, Departamento de Biologia Celular, Setor de Ciências Biológicas, Curitiba, PR, Brasil e-mail: [email protected] Condini M. -
Gadiformes: Moridae), with Description of a New Species from Saint Peter and Saint Paul Archipelago, Equatorial Atlantic
Zootaxa 4671 (1): 067–080 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2019 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4671.1.5 http://zoobank.org/urn:lsid:zoobank.org:pub:2DAC5AD3-6DAA-4D57-9FF0-C024174BAC0C Review of the Brazilian species of Physiculus (Gadiformes: Moridae), with description of a new species from Saint Peter and Saint Paul Archipelago, equatorial Atlantic ALESSANDRA M. A. PIRES1, ALFREDO CARVALHO-FILHO2,4, RÔMULO C. P. FERREIRA1, DANIELLE VIANA1, DIOGO NUNES3 & FABIO H. V. HAZIN1. ¹Universidade Federal Rural de Pernambuco, Rua Dom Manuel de Medeiros, s/n, Dois Irmãos, 52171-900, Recife, PE, Brasil E-mail: [email protected] ²Fish Bizz Ltda. Rua Moncorvo Filho 51, 05424-070, São Paulo, SP, Brasil. E-mail: [email protected] 3Unidade Acadêmica de Serra Talhada, Universidade Federal Rural de Pernambuco Fazenda Saco, Serra Talhada-PE, Brasil. 4Corresponding author Abstract Three valid species of the genus Physiculus are known from the Brazilian marine waters. A fourth, new species, Physiculus cirm n. sp.., is described based on seventeen specimens collected in the surroundings of Saint Peter and Saint Paul Archipelago, equatorial Atlantic. A review of the Brazilian species of Physiculus is provided, as well as a key to the species of the genus reported from the Atlantic Ocean. The new species is distinguished from all its congeners, except P. cynodon and P. karrerae, by the large number of longitudinal series of scales (156–189 vs. 70–150). P. cynodon from the Northern Pacific has about 200 longitudinal series of scales, and it differs from the new species by the number of rays of the first dorsal fin (6–8 vs. -
New Zealand Fishes a Field Guide to Common Species Caught by Bottom, Midwater, and Surface Fishing Cover Photos: Top – Kingfish (Seriola Lalandi), Malcolm Francis
New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing Cover photos: Top – Kingfish (Seriola lalandi), Malcolm Francis. Top left – Snapper (Chrysophrys auratus), Malcolm Francis. Centre – Catch of hoki (Macruronus novaezelandiae), Neil Bagley (NIWA). Bottom left – Jack mackerel (Trachurus sp.), Malcolm Francis. Bottom – Orange roughy (Hoplostethus atlanticus), NIWA. New Zealand fishes A field guide to common species caught by bottom, midwater, and surface fishing New Zealand Aquatic Environment and Biodiversity Report No: 208 Prepared for Fisheries New Zealand by P. J. McMillan M. P. Francis G. D. James L. J. Paul P. Marriott E. J. Mackay B. A. Wood D. W. Stevens L. H. Griggs S. J. Baird C. D. Roberts‡ A. L. Stewart‡ C. D. Struthers‡ J. E. Robbins NIWA, Private Bag 14901, Wellington 6241 ‡ Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, 6011Wellington ISSN 1176-9440 (print) ISSN 1179-6480 (online) ISBN 978-1-98-859425-5 (print) ISBN 978-1-98-859426-2 (online) 2019 Disclaimer While every effort was made to ensure the information in this publication is accurate, Fisheries New Zealand does not accept any responsibility or liability for error of fact, omission, interpretation or opinion that may be present, nor for the consequences of any decisions based on this information. Requests for further copies should be directed to: Publications Logistics Officer Ministry for Primary Industries PO Box 2526 WELLINGTON 6140 Email: [email protected] Telephone: 0800 00 83 33 Facsimile: 04-894 0300 This publication is also available on the Ministry for Primary Industries website at http://www.mpi.govt.nz/news-and-resources/publications/ A higher resolution (larger) PDF of this guide is also available by application to: [email protected] Citation: McMillan, P.J.; Francis, M.P.; James, G.D.; Paul, L.J.; Marriott, P.; Mackay, E.; Wood, B.A.; Stevens, D.W.; Griggs, L.H.; Baird, S.J.; Roberts, C.D.; Stewart, A.L.; Struthers, C.D.; Robbins, J.E. -
Two New Species of the Genus Chelidoperca (Perciformes: Serranidae) from the Andaman Sea, Eastern Indian Ocean
Zootaxa 4927 (1): 087–103 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2021 See end page footer ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4927.1.5 http://zoobank.org/urn:lsid:zoobank.org:pub:15753AC7-5399-465F-81A4-959F8984C587 Two new species of the genus Chelidoperca (Perciformes: Serranidae) from the Andaman Sea, eastern Indian Ocean PETER N. PSOMADAKIS1,2*, OFER GON2,4 & THAUNG HTUT3 1Food and Agriculture Organization of the United Nations, Viale delle Terme di Caracalla, 00153, Rome, Italy 2South African Institute for Aquatic Biodiversity, Private Bag 1015, Makhanda (formerly Grahamstown) 6140, South Africa 3Wildlife Conservation Society-Myanmar Program, P.O. Box 11041 Kamayut, Yangon, Myanmar 3 http://orcid.org/0000-0002-8608-991X 4 http://orcid.org/0000-0002-1179-8842 *Corresponding author: �[email protected]; http://orcid.org/0000-0002-2141-9471 Abstract Two new species of the genus Chelidoperca are described from specimens collected in 2015 and 2018 from the Andaman Sea, off the coast of Myanmar during trawl bottom surveys conducted by the R/V Dr. Fridtjof Nansen. Chelidoperca myathantuni sp. nov. is described based on 15 specimens (74.3–129.5 mm SL) from 101–185 m depth, which can be distinguished from all congeners by the following combination of characters: 3 (2 full-sized plus 1 half-sized) scale rows between lateral line and middle of spinous dorsal-fin base; 42–44 (modally 44) pored lateral-line scales; 16 pectoral-fin rays; interorbital scales extending to mid-orbit level; scales on ventral surface of lower jaw restricted to the angular (not extending onto the dentary); enlarged caniniform teeth on the upper jaw; side of body with longitudinal dashed black stripe; dorsal fin pale yellow with reddish pigment mostly restricted at base of spines and rays.