630.00 Lilianae, Monocots
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Complete Chloroplast Genomes Shed Light on Phylogenetic
www.nature.com/scientificreports OPEN Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae) Ju Namgung1,4, Hoang Dang Khoa Do1,2,4, Changkyun Kim1, Hyeok Jae Choi3 & Joo‑Hwan Kim1* Allioideae includes economically important bulb crops such as garlic, onion, leeks, and some ornamental plants in Amaryllidaceae. Here, we reported the complete chloroplast genome (cpDNA) sequences of 17 species of Allioideae, fve of Amaryllidoideae, and one of Agapanthoideae. These cpDNA sequences represent 80 protein‑coding, 30 tRNA, and four rRNA genes, and range from 151,808 to 159,998 bp in length. Loss and pseudogenization of multiple genes (i.e., rps2, infA, and rpl22) appear to have occurred multiple times during the evolution of Alloideae. Additionally, eight mutation hotspots, including rps15-ycf1, rps16-trnQ-UUG, petG-trnW-CCA , psbA upstream, rpl32- trnL-UAG , ycf1, rpl22, matK, and ndhF, were identifed in the studied Allium species. Additionally, we present the frst phylogenomic analysis among the four tribes of Allioideae based on 74 cpDNA coding regions of 21 species of Allioideae, fve species of Amaryllidoideae, one species of Agapanthoideae, and fve species representing selected members of Asparagales. Our molecular phylogenomic results strongly support the monophyly of Allioideae, which is sister to Amaryllioideae. Within Allioideae, Tulbaghieae was sister to Gilliesieae‑Leucocoryneae whereas Allieae was sister to the clade of Tulbaghieae‑ Gilliesieae‑Leucocoryneae. Molecular dating analyses revealed the crown age of Allioideae in the Eocene (40.1 mya) followed by diferentiation of Allieae in the early Miocene (21.3 mya). The split of Gilliesieae from Leucocoryneae was estimated at 16.5 mya. -
Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis Kåre Bremer Uppsala University
Aliso: A Journal of Systematic and Evolutionary Botany Volume 22 | Issue 1 Article 3 2006 Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis Kåre Bremer Uppsala University Thomas Janssen Muséum National d'Histoire Naturelle Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Bremer, Kåre and Janssen, Thomas (2006) "Gondwanan Origin of Major Monocot Groups Inferred from Dispersal-Vicariance Analysis," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 22: Iss. 1, Article 3. Available at: http://scholarship.claremont.edu/aliso/vol22/iss1/3 Aliso 22, pp. 22-27 © 2006, Rancho Santa Ana Botanic Garden GONDWANAN ORIGIN OF MAJOR MONO COT GROUPS INFERRED FROM DISPERSAL-VICARIANCE ANALYSIS KARE BREMERl.3 AND THOMAS JANSSEN2 lDepartment of Systematic Botany, Evolutionary Biology Centre, Norbyvagen l8D, SE-752 36 Uppsala, Sweden; 2Museum National d'Histoire Naturelle, Departement de Systematique et Evolution, USM 0602: Taxonomie et collections, 16 rue Buffon, 75005 Paris, France 3Corresponding author ([email protected]) ABSTRACT Historical biogeography of major monocot groups was investigated by biogeographical analysis of a dated phylogeny including 79 of the 81 monocot families using the Angiosperm Phylogeny Group II (APG II) classification. Five major areas were used to describe the family distributions: Eurasia, North America, South America, Africa including Madagascar, and Australasia including New Guinea, New Caledonia, and New Zealand. In order to investigate the possible correspondence with continental breakup, the tree with its terminal distributions was fitted to the geological area cladogram «Eurasia, North America), (Africa, (South America, Australasia») and to alternative area cladograms using the TreeFitter program. -
Full of Beans: a Study on the Alignment of Two Flowering Plants Classification Systems
Full of beans: a study on the alignment of two flowering plants classification systems Yi-Yun Cheng and Bertram Ludäscher School of Information Sciences, University of Illinois at Urbana-Champaign, USA {yiyunyc2,ludaesch}@illinois.edu Abstract. Advancements in technologies such as DNA analysis have given rise to new ways in organizing organisms in biodiversity classification systems. In this paper, we examine the feasibility of aligning two classification systems for flowering plants using a logic-based, Region Connection Calculus (RCC-5) ap- proach. The older “Cronquist system” (1981) classifies plants using their mor- phological features, while the more recent Angiosperm Phylogeny Group IV (APG IV) (2016) system classifies based on many new methods including ge- nome-level analysis. In our approach, we align pairwise concepts X and Y from two taxonomies using five basic set relations: congruence (X=Y), inclusion (X>Y), inverse inclusion (X<Y), overlap (X><Y), and disjointness (X!Y). With some of the RCC-5 relationships among the Fabaceae family (beans family) and the Sapindaceae family (maple family) uncertain, we anticipate that the merging of the two classification systems will lead to numerous merged solutions, so- called possible worlds. Our research demonstrates how logic-based alignment with ambiguities can lead to multiple merged solutions, which would not have been feasible when aligning taxonomies, classifications, or other knowledge or- ganization systems (KOS) manually. We believe that this work can introduce a novel approach for aligning KOS, where merged possible worlds can serve as a minimum viable product for engaging domain experts in the loop. Keywords: taxonomy alignment, KOS alignment, interoperability 1 Introduction With the advent of large-scale technologies and datasets, it has become increasingly difficult to organize information using a stable unitary classification scheme over time. -
Generic Classification of Amaryllidaceae Tribe Hippeastreae Nicolás García,1 Alan W
TAXON 2019 García & al. • Genera of Hippeastreae SYSTEMATICS AND PHYLOGENY Generic classification of Amaryllidaceae tribe Hippeastreae Nicolás García,1 Alan W. Meerow,2 Silvia Arroyo-Leuenberger,3 Renata S. Oliveira,4 Julie H. Dutilh,4 Pamela S. Soltis5 & Walter S. Judd5 1 Herbario EIF & Laboratorio de Sistemática y Evolución de Plantas, Facultad de Ciencias Forestales y de la Conservación de la Naturaleza, Universidad de Chile, Av. Santa Rosa 11315, La Pintana, Santiago, Chile 2 USDA-ARS-SHRS, National Germplasm Repository, 13601 Old Cutler Rd., Miami, Florida 33158, U.S.A. 3 Instituto de Botánica Darwinion, Labardén 200, CC 22, B1642HYD, San Isidro, Buenos Aires, Argentina 4 Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Postal Code 6109, 13083-970 Campinas, SP, Brazil 5 Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, U.S.A. Address for correspondence: Nicolás García, [email protected] DOI https://doi.org/10.1002/tax.12062 Abstract A robust generic classification for Amaryllidaceae has remained elusive mainly due to the lack of unequivocal diagnostic characters, a consequence of highly canalized variation and a deeply reticulated evolutionary history. A consensus classification is pro- posed here, based on recent molecular phylogenetic studies, morphological and cytogenetic variation, and accounting for secondary criteria of classification, such as nomenclatural stability. Using the latest sutribal classification of Hippeastreae (Hippeastrinae and Traubiinae) as a foundation, we propose the recognition of six genera, namely Eremolirion gen. nov., Hippeastrum, Phycella s.l., Rhodolirium s.str., Traubia, and Zephyranthes s.l. A subgeneric classification is suggested for Hippeastrum and Zephyranthes to denote putative subclades. -
(Monocot): the Story of a Gene Family Expansion Alberto Cenci, Nathalie Chantret, Mathieu Rouard
Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion Alberto Cenci, Nathalie Chantret, Mathieu Rouard To cite this version: Alberto Cenci, Nathalie Chantret, Mathieu Rouard. Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion. Frontiers in Plant Science, Frontiers, 2018, 9, 10.3389/fpls.2018.01843. hal-02621636 HAL Id: hal-02621636 https://hal.inrae.fr/hal-02621636 Submitted on 26 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License fpls-09-01843 December 8, 2018 Time: 15:6 # 1 ORIGINAL RESEARCH published: 11 December 2018 doi: 10.3389/fpls.2018.01843 Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion Alberto Cenci1*, Nathalie Chantret2 and Mathieu Rouard1 1 Bioversity International, Parc Scientifique Agropolis II, Montpellier, France, 2 AGAP, INRA, CIRAD, Université de Montpellier, Montpellier, France Plant cell walls play a fundamental role in several plant traits and also influence crop use as livestock nutrition or biofuel production. The Glycosyltransferase family 61 (GT61) is involved in the synthesis of cell wall xylans. -
Species List For: Valley View Glades NA 418 Species
Species List for: Valley View Glades NA 418 Species Jefferson County Date Participants Location NA List NA Nomination and subsequent visits Jefferson County Glade Complex NA List from Gass, Wallace, Priddy, Chmielniak, T. Smith, Ladd & Glore, Bogler, MPF Hikes 9/24/80, 10/2/80, 7/10/85, 8/8/86, 6/2/87, 1986, and 5/92 WGNSS Lists Webster Groves Nature Study Society Fieldtrip Jefferson County Glade Complex Participants WGNSS Vascular Plant List maintained by Steve Turner Species Name (Synonym) Common Name Family COFC COFW Acalypha virginica Virginia copperleaf Euphorbiaceae 2 3 Acer rubrum var. undetermined red maple Sapindaceae 5 0 Acer saccharinum silver maple Sapindaceae 2 -3 Acer saccharum var. undetermined sugar maple Sapindaceae 5 3 Achillea millefolium yarrow Asteraceae/Anthemideae 1 3 Aesculus glabra var. undetermined Ohio buckeye Sapindaceae 5 -1 Agalinis skinneriana (Gerardia) midwestern gerardia Orobanchaceae 7 5 Agalinis tenuifolia (Gerardia, A. tenuifolia var. common gerardia Orobanchaceae 4 -3 macrophylla) Ageratina altissima var. altissima (Eupatorium rugosum) white snakeroot Asteraceae/Eupatorieae 2 3 Agrimonia pubescens downy agrimony Rosaceae 4 5 Agrimonia rostellata woodland agrimony Rosaceae 4 3 Allium canadense var. mobilense wild garlic Liliaceae 7 5 Allium canadense var. undetermined wild garlic Liliaceae 2 3 Allium cernuum wild onion Liliaceae 8 5 Allium stellatum wild onion Liliaceae 6 5 * Allium vineale field garlic Liliaceae 0 3 Ambrosia artemisiifolia common ragweed Asteraceae/Heliantheae 0 3 Ambrosia bidentata lanceleaf ragweed Asteraceae/Heliantheae 0 4 Ambrosia trifida giant ragweed Asteraceae/Heliantheae 0 -1 Amelanchier arborea var. arborea downy serviceberry Rosaceae 6 3 Amorpha canescens lead plant Fabaceae/Faboideae 8 5 Amphicarpaea bracteata hog peanut Fabaceae/Faboideae 4 0 Andropogon gerardii var. -
A Comparison of Size and Sexual Expression in Populations of Arisaema Macrospathum Benth
G. DIERINGER, L. CABRERA R., 2000 31 A comparison of size and sexual expression in populations of Arisaema macrospathum Benth. and A. dracontium (L.) Schott (Araceae) G. Dieringer and L Cabrera R. Department of Biological Sciences University of Texas at Brownsville Brownsville, TX 78520, USA ABSTRACT KEYWORDS The sexual expression or breeding sys Arisaema macrospathum, Araceae, sex tem for tropical populations of Arisaema ual expression, cloud forest, Mexico. macrospathum was compared with that of its temperate counterpart, A. dracontium. INTRODUCTION Although A. macrospathum populations Arisaema macrospathum Benth., A. are morphologically very similar to A. dra dracontium (L.) Schott and A. triphyllum contium, they differ markedly in sexual (L.) Schott are the three Arisaema species expression. Temperate populations of A. found in North America (Correll & John dracontium are andromonoecious, while ston, 1979; Gleason & Cronquist, 1991; those of A. macrospathum occurring in McVaugh, 1993). These perennial species cloud forest were found to bear only uni are distributed mostly in temperate regions sexual flowers, staminate or pistillate with from southern Canada (Ontario and Que monoecious individuals completely lack bec; Yang et aI., 1999) through the eastern ing. Male plants produced a mean of 42.7 United States and south into Mexico, par flowers/spadix while females produced a ticularly along the montane east coast mean of 60.9. For males, number of flow (Johnston et ai., 1989: McVaugh, 1993). Ar ers/spadix showed a significant, positive isaema dracontium and A. triphyllum relationship with plant size as measured have been the subject of a number of eco by basal stern diameter, but no relation logical and evolutionary studies (Bierzy ship was detected for females. -
Threatened and Endangered Species List
Effective April 15, 2009 - List is subject to revision For a complete list of Tennessee's Rare and Endangered Species, visit the Natural Areas website at http://tennessee.gov/environment/na/ Aquatic and Semi-aquatic Plants and Aquatic Animals with Protected Status State Federal Type Class Order Scientific Name Common Name Status Status Habit Amphibian Amphibia Anura Gyrinophilus gulolineatus Berry Cave Salamander T Amphibian Amphibia Anura Gyrinophilus palleucus Tennessee Cave Salamander T Crustacean Malacostraca Decapoda Cambarus bouchardi Big South Fork Crayfish E Crustacean Malacostraca Decapoda Cambarus cymatilis A Crayfish E Crustacean Malacostraca Decapoda Cambarus deweesae Valley Flame Crayfish E Crustacean Malacostraca Decapoda Cambarus extraneus Chickamauga Crayfish T Crustacean Malacostraca Decapoda Cambarus obeyensis Obey Crayfish T Crustacean Malacostraca Decapoda Cambarus pristinus A Crayfish E Crustacean Malacostraca Decapoda Cambarus williami "Brawley's Fork Crayfish" E Crustacean Malacostraca Decapoda Fallicambarus hortoni Hatchie Burrowing Crayfish E Crustacean Malocostraca Decapoda Orconectes incomptus Tennessee Cave Crayfish E Crustacean Malocostraca Decapoda Orconectes shoupi Nashville Crayfish E LE Crustacean Malocostraca Decapoda Orconectes wrighti A Crayfish E Fern and Fern Ally Filicopsida Polypodiales Dryopteris carthusiana Spinulose Shield Fern T Bogs Fern and Fern Ally Filicopsida Polypodiales Dryopteris cristata Crested Shield-Fern T FACW, OBL, Bogs Fern and Fern Ally Filicopsida Polypodiales Trichomanes boschianum -
The Fossil Record of Angiosperm Families in Relation to Baraminology
The Proceedings of the International Conference on Creationism Volume 7 Article 31 2013 The Fossil Record of Angiosperm Families in Relation to Baraminology Roger W. Sanders Bryan College Follow this and additional works at: https://digitalcommons.cedarville.edu/icc_proceedings DigitalCommons@Cedarville provides a publication platform for fully open access journals, which means that all articles are available on the Internet to all users immediately upon publication. However, the opinions and sentiments expressed by the authors of articles published in our journals do not necessarily indicate the endorsement or reflect the views of DigitalCommons@Cedarville, the Centennial Library, or Cedarville University and its employees. The authors are solely responsible for the content of their work. Please address questions to [email protected]. Browse the contents of this volume of The Proceedings of the International Conference on Creationism. Recommended Citation Sanders, Roger W. (2013) "The Fossil Record of Angiosperm Families in Relation to Baraminology," The Proceedings of the International Conference on Creationism: Vol. 7 , Article 31. Available at: https://digitalcommons.cedarville.edu/icc_proceedings/vol7/iss1/31 Proceedings of the Seventh International Conference on Creationism. Pittsburgh, PA: Creation Science Fellowship THE FOSSIL RECORD OF ANGIOSPERM FAMILIES IN RELATION TO BARAMINOLOGY Roger W. Sanders, Ph.D., Bryan College #7802, 721 Bryan Drive, Dayton, TN 37321 USA KEYWORDS: Angiosperms, flowering plants, fossils, baramins, Flood, post-Flood continuity criterion, continuous fossil record ABSTRACT To help estimate the number and boundaries of created kinds (i.e., baramins) of flowering plants, the fossil record has been analyzed. To designate the status of baramin, a criterion is applied that tests whether some but not all of a group’s hierarchically immediate subgroups have a fossil record back to the Flood (accepted here as near the Cretaceous-Paleogene boundary). -
History and Current Status of Systematic Research with Araceae
HISTORY AND CURRENT STATUS OF SYSTEMATIC RESEARCH WITH ARACEAE Thomas B. Croat Missouri Botanical Garden P. O. Box 299 St. Louis, MO 63166 U.S.A. Note: This paper, originally published in Aroideana Vol. 21, pp. 26–145 in 1998, is periodically updated onto the IAS web page with current additions. Any mistakes, proposed changes, or new publications that deal with the systematics of Araceae should be brought to my attention. Mail to me at the address listed above, or e-mail me at [email protected]. Last revised November 2004 INTRODUCTION The history of systematic work with Araceae has been previously covered by Nicolson (1987b), and was the subject of a chapter in the Genera of Araceae by Mayo, Bogner & Boyce (1997) and in Curtis's Botanical Magazine new series (Mayo et al., 1995). In addition to covering many of the principal players in the field of aroid research, Nicolson's paper dealt with the evolution of family concepts and gave a comparison of the then current modern systems of classification. The papers by Mayo, Bogner and Boyce were more comprehensive in scope than that of Nicolson, but still did not cover in great detail many of the participants in Araceae research. In contrast, this paper will cover all systematic and floristic work that deals with Araceae, which is known to me. It will not, in general, deal with agronomic papers on Araceae such as the rich literature on taro and its cultivation, nor will it deal with smaller papers of a technical nature or those dealing with pollination biology. -
Chapter 24: Plant Reproduction and Response
Plant Reproduction 24 and Response 694 S ON CU O F TEKS 10B THE GREEN LEMONS For years, a California warehouse had stored freshly picked green lemons before they were shipped to market. The warehouse managers knew that the lemons would always be ripe and yellow Pollen grains from the common and ready to ship to market about five ragweed (SEM 1000∙) days after they arrived. Or so they thought. One year, for safety reasons, they decided to replace the warehouse’s kerosene heaters with modern electric ones. Then, much to their surprise, when they began to pack their first shipment of five-day-old lemons, they had to stop. The fruit they expected to ship were still a bright, and very unripe, green. All the lemons had been grown under similar conditions. A variable had changed after the lemons were harvested, and the lemons had failed to ripen. What could it have been? Look for clues in this chapter to the mystery of the still- green lemons. Then, solve the mystery. Never Stop Exploring Your World. Finding the solution to The Green Lemons mystery is only the beginning. Take a video field trip with the ecogeeks of Untamed Science to see where this mystery leads. Texas Essential Knowledge and Skills READINESS TEKS: 10B Describe the interactions that occur among systems that perform the functions of transport, reproduction, and response in plants. SUPPORTING TEKS: 5B Examine specialized cells, including roots, stems, and leaves of plants; and animal cells such as blood, muscle, and epithelium. 12B Compare variations and adaptations of organisms in different ecosystems. -
An Encyclopedia of Shade Perennials This Page Intentionally Left Blank an Encyclopedia of Shade Perennials
An Encyclopedia of Shade Perennials This page intentionally left blank An Encyclopedia of Shade Perennials W. George Schmid Timber Press Portland • Cambridge All photographs are by the author unless otherwise noted. Copyright © 2002 by W. George Schmid. All rights reserved. Published in 2002 by Timber Press, Inc. Timber Press The Haseltine Building 2 Station Road 133 S.W. Second Avenue, Suite 450 Swavesey Portland, Oregon 97204, U.S.A. Cambridge CB4 5QJ, U.K. ISBN 0-88192-549-7 Printed in Hong Kong Library of Congress Cataloging-in-Publication Data Schmid, Wolfram George. An encyclopedia of shade perennials / W. George Schmid. p. cm. ISBN 0-88192-549-7 1. Perennials—Encyclopedias. 2. Shade-tolerant plants—Encyclopedias. I. Title. SB434 .S297 2002 635.9′32′03—dc21 2002020456 I dedicate this book to the greatest treasure in my life, my family: Hildegarde, my wife, friend, and supporter for over half a century, and my children, Michael, Henry, Hildegarde, Wilhelmina, and Siegfried, who with their mates have given us ten grandchildren whose eyes not only see but also appreciate nature’s riches. Their combined love and encouragement made this book possible. This page intentionally left blank Contents Foreword by Allan M. Armitage 9 Acknowledgments 10 Part 1. The Shady Garden 11 1. A Personal Outlook 13 2. Fated Shade 17 3. Practical Thoughts 27 4. Plants Assigned 45 Part 2. Perennials for the Shady Garden A–Z 55 Plant Sources 339 U.S. Department of Agriculture Hardiness Zone Map 342 Index of Plant Names 343 Color photographs follow page 176 7 This page intentionally left blank Foreword As I read George Schmid’s book, I am reminded that all gardeners are kindred in spirit and that— regardless of their roots or knowledge—the gardening they do and the gardens they create are always personal.