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Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales
TAXON 57 (1) • February 2008: 53–65 Winkworth & al. • Campanulid phylogeny MOLECULAR PHYLOGENETICS Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales Richard C. Winkworth1,2, Johannes Lundberg3 & Michael J. Donoghue4 1 Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461–CEP 05422-970, São Paulo, SP, Brazil. [email protected] (author for correspondence) 2 Current address: School of Biology, Chemistry, and Environmental Sciences, University of the South Pacific, Private Bag, Laucala Campus, Suva, Fiji 3 Department of Phanerogamic Botany, The Swedish Museum of Natural History, Box 50007, 104 05 Stockholm, Sweden 4 Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, P.O. Box 208106, New Haven, Connecticut 06520-8106, U.S.A. Broad-scale phylogenetic analyses of the angiosperms and of the Asteridae have failed to confidently resolve relationships among the major lineages of the campanulid Asteridae (i.e., the euasterid II of APG II, 2003). To address this problem we assembled presently available sequences for a core set of 50 taxa, representing the diver- sity of the four largest lineages (Apiales, Aquifoliales, Asterales, Dipsacales) as well as the smaller “unplaced” groups (e.g., Bruniaceae, Paracryphiaceae, Columelliaceae). We constructed four data matrices for phylogenetic analysis: a chloroplast coding matrix (atpB, matK, ndhF, rbcL), a chloroplast non-coding matrix (rps16 intron, trnT-F region, trnV-atpE IGS), a combined chloroplast dataset (all seven chloroplast regions), and a combined genome matrix (seven chloroplast regions plus 18S and 26S rDNA). Bayesian analyses of these datasets using mixed substitution models produced often well-resolved and supported trees. -
New Species and Combinations in the African Restionaceae
Available online at www.sciencedirect.com South African Journal of Botany 77 (2011) 415–424 www.elsevier.com/locate/sajb New species and combinations in the African Restionaceae H.P. Linder Institute of Systematic Botany, University of Zurich, Zollikerstrasse 107, CH-8008 Zurich, Switzerland Received 13 January 2010; received in revised form 28 June 2010; accepted 19 October 2010 Abstract Eight new species of the African Restionaceae (Restionoideae) are described, viz.: Cannomois anfracta, Cannomois arenicola, Cannomois grandis, Nevillea vlokii, Thamnochortus kammanassiae, Willdenowia pilleata, Restio uniflorus and Restio mkambatiae. A key to the species of Cannomois is provided, as well as a table comparing the characters of the three species in Nevillea. For all new species, notes on the affinities of the species and their habitats are provided. Two new combinations, Cannomois primosii (Pillans) H.P. Linder and Cannomois robusta (Kunth) H. P. Linder, are made. © 2010 SAAB. Published by Elsevier B.V. All rights reserved. Keywords: Cape Floristic Region; Restionaceae; Restionoideae; South Africa; Taxonomy 1. Introduction variable species can be sensibly divided or from the discovery in the field of species not collected before. Restionaceae are widespread in the Southern Hemisphere, The taxonomy of the African Restionaceae is regularly with a main concentration of species in southern Africa (358 updated and available in the Intkey format, either on a CD avail- species) and Australia (ca. 170 species), and with only one able from the Bolus Herbarium, or as a free download from my species in Southeast Asia and in South America (Briggs, 2001; website at http://www.systbot.uzh.ch/Bestimmungsschluessel/ Linder et al., 1998; Meney and Pate, 1999). -
Science and Stewardship to Protect and Sustain Wilderness Values
Using Biodiversity Stewardship as a Means to Secure the Natural Wild Values on Communal Land in South Africa Kevin McCann, Dr Roelie Kloppers, and Dr Andrew Venter Abstract—South Africa is one of the most biodiversity-rich coun- These voluntary Biodiversity Stewardship agreements are charac- tries in the world, with much valuable biodiversity situated on a terised by innovative, pro-poor green enterprise-based approaches to range of different land tenure types, including state, private and sustainable development and the conservation of biodiversity. They communal land. Despite this, these wild lands are being lost at an aim to create a green economy where the conservation of ecosystems unprecedented rate, with the resultant loss of natural areas and and biodiversity is the foundation of sustainable development and associated ecosystem services. The challenge lies in the need to where a closer alignment of environmental and economic systems protect the unique biodiversity, by integrating the development is imperative, ensuring direct community benefit through improved needs of poverty-stricken communities with the need to secure the natural resource management. remaining natural wild places, and thereby secure the very areas on which these communities rely for their daily requirements (water, firewood, medicinal plants). Biodiversity Stewardship is increasingly becoming the principal strategy to secure land, in favour of more traditional methods such Introduction ______________________ as land acquisition. This mechanism recognises landowners as cus- As a developing country that needs to reduce poverty lev- todians of their land, and promotes and supports the wise use and els and ensure sustainable livelihoods for its people, South management of natural resources and biodiversity, through the form Africa faces critical challenges relating to the need to protect of voluntary legal agreements, thereby making rural landowners biodiversity and at the same time implement programmes effective “stewards” of their land. -
Phylogeny and Subfamilial Classification of the Grasses (Poaceae) Author(S): Grass Phylogeny Working Group, Nigel P
Phylogeny and Subfamilial Classification of the Grasses (Poaceae) Author(s): Grass Phylogeny Working Group, Nigel P. Barker, Lynn G. Clark, Jerrold I. Davis, Melvin R. Duvall, Gerald F. Guala, Catherine Hsiao, Elizabeth A. Kellogg, H. Peter Linder Source: Annals of the Missouri Botanical Garden, Vol. 88, No. 3 (Summer, 2001), pp. 373-457 Published by: Missouri Botanical Garden Press Stable URL: http://www.jstor.org/stable/3298585 Accessed: 06/10/2008 11:05 Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/page/info/about/policies/terms.jsp. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/action/showPublisher?publisherCode=mobot. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. JSTOR is a not-for-profit organization founded in 1995 to build trusted digital archives for scholarship. We work with the scholarly community to preserve their work and the materials they rely upon, and to build a common research platform that promotes the discovery and use of these resources. For more information about JSTOR, please contact [email protected]. -
Rates of Molecular Evolution and Diversification in Plants: Chloroplast
Duchene and Bromham BMC Evolutionary Biology 2013, 13:65 http://www.biomedcentral.com/1471-2148/13/65 RESEARCH ARTICLE Open Access Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlate with species-richness in the Proteaceae David Duchene* and Lindell Bromham Abstract Background: Many factors have been identified as correlates of the rate of molecular evolution, such as body size and generation length. Analysis of many molecular phylogenies has also revealed correlations between substitution rates and clade size, suggesting a link between rates of molecular evolution and the process of diversification. However, it is not known whether this relationship applies to all lineages and all sequences. Here, in order to investigate how widespread this phenomenon is, we investigate patterns of substitution in chloroplast genomes of the diverse angiosperm family Proteaceae. We used DNA sequences from six chloroplast genes (6278bp alignment with 62 taxa) to test for a correlation between diversification and the rate of substitutions. Results: Using phylogenetically-independent sister pairs, we show that species-rich lineages of Proteaceae tend to have significantly higher chloroplast substitution rates, for both synonymous and non-synonymous substitutions. Conclusions: We show that the rate of molecular evolution in chloroplast genomes is correlated with net diversification rates in this large plant family. We discuss the possible causes of this relationship, including molecular evolution driving diversification, speciation increasing the rate of substitutions, or a third factor causing an indirect link between molecular and diversification rates. The link between the synonymous substitution rate and clade size is consistent with a role for the mutation rate of chloroplasts driving the speed of reproductive isolation. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
Arctic and Boreal Plant Species Decline at Their Southern Range Limits in the Rocky Mountains
Ecology Letters, (2017) 20: 166–174 doi: 10.1111/ele.12718 LETTER Arctic and boreal plant species decline at their southern range limits in the Rocky Mountains Abstract Peter Lesica1,2* and Climate change is predicted to cause a decline in warm-margin plant populations, but this hypoth- Elizabeth E. Crone3 esis has rarely been tested. Understanding which species and habitats are most likely to be affected is critical for adaptive management and conservation. We monitored the density of 46 populations representing 28 species of arctic-alpine or boreal plants at the southern margin of their ranges in the Rocky Mountains of Montana, USA, between 1988 and 2014 and analysed population trends and relationships to phylogeny and habitat. Marginal populations declined overall during the past two decades; however, the mean trend for 18 dicot populations was À5.8% per year, but only À0.4% per year for the 28 populations of monocots and pteridophytes. Declines in the size of peripheral populations did not differ significantly among tundra, fen and forest habitats. Results of our study support predicted effects of climate change and suggest that vulnerability may depend on phylogeny or associated anatomical/physiological attributes. Keywords arctic-alpine plants, boreal plants, climate change, fens, marginal populations, peripheral popula- tions, range margins, Rocky Mountains. Ecology Letters (2017) 20: 166–174 2009; Sexton et al. 2009; Brusca et al. 2013), which suggests INTRODUCTION that in some cases climate does not determine a species’ range. Climate of the earth is changing at an unprecedented rate Nonetheless, most plant ecologists believe that climate is an (Jackson & Overpeck 2000; IPCC 2013) and is predicted to important factor determining geographic range limits. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
Orchid Seed Coat Morphometrics. Molvray and Kores. 1995
American Journal of Botany 82(11): 1443-1454. 1995 . CHARACTER ANALYSIS OF THE SEED COAT IN SPIRANTHOIDEAE AND ORCHIDOIDEAE, WITH SPECIAL REFERENCE TO THE DIURIDEAE (ORCHIDACEAE)I MIA MOLVRAy2 AND PAUL J. KORES Department of Biological Sciences, Loyola University, New Orleans, Louisiana 70118 Previous work on seed types within Orchidaceae has demonstrated that characters associated with the seed coat may have considerable phylogenetic utility. Application of the se characters has been complicated in practice by the absence of quan titative descriptors and in some instances by their apparent lack of congruity with the taxa under con sideration. Using quantitative descriptors of size and shape, we have demonstrated that some of the existing seed classes do not represent well delimited, discrete entities, and we have proposed new seed classes to meet these criteria. In the spiranthoid-orchidoid complex, the characters yielding the most clearly delimited shape classes are cell number and variability and degree and stochasticity of medial cell elongation. Of lesser, but still appreciable, significance are the pre sence of varying types and degrees of intercellular gaps, and some, but not all, features of cell walls. Four seed classes are evident on the basis of these characters in Spiranthoideae and Orchidoideae. These seed types are briefly described, and their distribution among the taxa examined for this study is reported. It is hoped that these more strictly delimited seed classes will faci litate phylogenetic analysis in the family. Phylogenetic relationships within the Orchidaceae delimitation of the seed coat characters within the two have been discussed extensively in a series of recent pub putatively most primitive subfamilies of monandrous or lications by Garay (1960, 1972), Dressler (1981, 1986, chids and evaluates the util ity of these characters for the 1990a, b, c, 1993), Rasmussen (1982, 1986), Burns-Bal purpose of phylogenetic inference, extends this avenue of ogh and Funk (1986), and Chase et aI. -
Vicariance, Climate Change, Anatomy and Phylogeny of Restionaceae
Botanical Journal of the Linnean Society (2000), 134: 159–177. With 12 figures doi:10.1006/bojl.2000.0368, available online at http://www.idealibrary.com on Under the microscope: plant anatomy and systematics. Edited by P. J. Rudall and P. Gasson Vicariance, climate change, anatomy and phylogeny of Restionaceae H. P. LINDER FLS Bolus Herbarium, University of Cape Town, Rondebosch 7701, South Africa Cutler suggested almost 30 years ago that there was convergent evolution between African and Australian Restionaceae in the distinctive culm anatomical features of Restionaceae. This was based on his interpretation of the homologies of the anatomical features, and these are here tested against a ‘supertree’ phylogeny, based on three separate phylogenies. The first is based on morphology and includes all genera; the other two are based on molecular sequences from the chloroplast genome; one covers the African genera, and the other the Australian genera. This analysis corroborates Cutler’s interpretation of convergent evolution between African and Australian Restionaceae. However, it indicates that for the Australian genera, the evolutionary pathway of the culm anatomy is much more complex than originally thought. In the most likely scenario, the ancestral Restionaceae have protective cells derived from the chlorenchyma. These persist in African Restionaceae, but are soon lost in Australian Restionaceae. Pillar cells and sclerenchyma ribs evolve early in the diversification of Australian Restionaceae, but are secondarily lost numerous times. In some of the reduction cases, the result is a very simple culm anatomy, which Cutler had interpreted as a primitively simple culm type, while in other cases it appears as if the functions of the ribs and pillars may have been taken over by a new structure, protective cells developed from epidermal, rather than chlorenchyma, cells. -
Leaf Anatomy of Bruniaceae: Ecological, Systematic and Phylogenetic Aspects
Botanical Journal of ike Linnean Society (1991), 107: 1-34. With 54 figures Leaf anatomy of Bruniaceae: ecological, systematic and phylogenetic aspects SHERWIN CARLQUIST, F.L.S. • Rancho Santa Ana Botanic Garden and Department of Biology, Pomona College, Claremont, California 91711, U.S.A. Received August 1989, accepted for publication October 1989 CARLQUIST, S., 1991. Leaf anatomy of Bruniaceae: ecological systematic and phylogenetic aspects. Quantitative and qualitative data are given for 60 species of the 12 genera of Bruniaceae; most data are based on liquid-preserved material. Leaves of Bruniaceae are basically linear (broader forms are probably derived) with an apicula that contains phellogen activity. Most bruniaceous leaves have some degree of isolateral construction, with transition to normal bifacial construction in a few species, but more commonly transition to 'inverse' bifacial structure (stomata on adaxial face, palisade on abaxial face). The latter type is correlated with the tendency for leaves to be appressed to stems. Tannins and very likely other dark-staining materials are very characteristic of mesophyll cells. Six genera have a large strand of fibres on the midvein and rhomboidal crystals in bundle sheath cells. The other six genera have few or no fibres on veins and have druses in mesophyll cells (but not in bundle sheath cells;. These distinctions may relate to intrafamilial taxonomy, but they also support the primitive position usually accorded to Audouinia, Thamnea and Tittmannia. A key to genera based on leaf antomy is offered. Details of epidermal cell shape, cuticular relief and trichome form and structure based on scanning electron microscopy are given. -
Nectar Distribution and Nectarivorous Bird Foraging Behaviour at Different Spatial Scales
Nectar distribution and nectarivorous bird foraging behaviour at different spatial scales by Anina Coetzee Dissertation presented for the Degree of Doctor of Philosophy in the Faculty of Science, at Stellenbosch University Supervisor: Prof. Anton Pauw Co-supervisor: Dr. Phoebe Barnard March 2016 Stellenbosch University https://scholar.sun.ac.za Declaration By submitting this thesis electronically, I declare that the entirety of the work contained therein is my own original work, that I am the authorship owner thereof (unless to the extent explicitly otherwise stated) and that I have not previously in its entirety or in part submitted it for obtaining any qualification. March 2016 Copyright © 2016 Stellenbosch University of Stellenbosch All rights reserved i Stellenbosch University https://scholar.sun.ac.za Abstract While foraging strategies of animals may be shaped by the distribution of their food resources, these strategies in turn also affect the ecology and evolution of their resources. In this regard, African systems, of all the different bird-pollination systems worldwide, have been least studied. I investigated the relationships between these aspects at population, community and landscape levels in the bird-pollination systems of the Cape Floristic Region. This biodiversity hotspot in the southwest of South Africa contains an unusually high number of bird-pollinated plant species relative to the number of pollinating bird species. Chapter 2 describes how I experimentally tested which nectar resource traits affect sunbird foraging behaviour at the small scale within populations. Sunbirds’ behaviour was largely determined by visual signals and distances between nectar resources. The birds showed flower colour preferences, but no flower constancy (selective foraging only on one flower type).