bioRxiv preprint doi: https://doi.org/10.1101/680488; this version posted June 24, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. A phylogenomic analysis of Nepenthes (Nepenthaceae) Bruce Murphyab*, Félix Foresta, Timothy Barracloughb, James Rosindellb, Sidonie Bellota, Robyn Cowana, Michal Golosc, Matthew Jebbd, Martin Cheeka a Royal Botanic Gardens Kew, Richmond, Surrey TW9 3AE, U.K b Department of Life Sciences, Imperial College, Silwood Park Campus, Ascot, Berks. SL5 7PY, UK c School of Biological Sciences, University of Bristol, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK d National Botanic Gardens, Glasnevin, Dublin, ROI D09 VY63 Corresponding author at Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey, TW9 3DS, UK email address:
[email protected] Abstract Nepenthaceae is one of the largest carnivorous plant families and features ecological and morphological adaptations indicating an impressive adaptive radiation. However, investigation of evolutionary and taxonomic questions is hindered by poor phylogenetic understanding, with previous molecular studies based on limited loci and taxa. We use high-throughput sequencing with a target-capture methodology based on a 353-loci, probe set to recover sequences for 197 samples, representing 151 described or putative Nepenthes species. Phylogenetic analyses were performed using supermatrix and maximum quartet species tree approaches. Our analyses confirm five Western outlier taxa, followed by N. danseri, as successively sister to the remainder of the group. We also find mostly consistent recovery of two major Southeast Asian clades.