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LAB Publications from 2014 Laboratories of Analytical Biology Publications from 2014 Publications listed in alphabetical order. Andrade, SCS, H Montenegro, M Strand, M Schwartz, H Kajihara, JL Norenburg, JM Turbeville, P Sundberg, & G Giribet. 2014. Phylogenomics of ribbon worms (phylum Nemertea). Molecular Biology & Evolution. doi:10.1093/molbev/msu253 Appelhans, MS, J Wen & WL Wagner. 2014. A molecular phylogeny of Acronychia, Euodia, Melicope and relatives (Rutaceae) reveals polyphyletic genera and key innovations for species richness. Molecular Phylogenetics & Evolution: in press. Appelhans, MS, J Wen , KR Wood, GJ Allan, EA Zimmer & WL Wagner. 2014. Molecular phylogenetic analysis of Hawaiian Rutaceae (Melicope, Platydesma & Zanthoxylum) and their different colonization patterns. Botanical Journal of the Linnean Society 174(3): 425-448. doi:10.1111/boj.12123 Baeza, JA, RT Bauer, J Okuno & M Thiel. 2014. Molecular phylogeny of hinge-beak shrimps (Decapoda: Caridea: Rhynchocinetes and Cinetorhyncus) and allies: a formal test of familiar and generic monophyly using a multilocus phylogeny. Zoological Journal of the Linnean Society: in press. Baldwin, CC & GD Johnson. 2014. Connectivity across the Caribbean Sea: DNA barcoding and morphology unite an enigmatic fish larva from the Florida Straits with a new species of sea bass from deep reefs off Curaçao. PLoS ONE 9(5): e97661. Baldwin, CC & DR Robertson. 2014. A new Liopropoma sea bass (Serranidae: Epinephelinae: Liopropomini) from deep reefs off Curaçao, southern Caribbean, with comments on depth distributions of western Atlantic liopropomins. Zookeys 409: 71-92. Betancur-R R & G Ortí. 2014. Molecular evidence for the monophyly of flatfishes (Carangimorpharia: Pleuronectiformes). Molecular Phylogenetics & Evolution 73: 18-22. doi:10.1016/j.ympev.2014.01.006 Betancur-R R, G Naylor, & G Ortí. 2014. Conserved genes, sampling error, and phylogenomic inference. Systematic Biology. doi: 10.1093/sysbio/syt073 Bowen, BW, K Shanker, N Yasuda, MCMD Malay, S von der Heyden, G Paulay, LA Rocha, KA Selkoe, PH Barber, ST Williams, HA Lessios, ED Crandall, G Bernardi, CP Meyer , KE Carpenter & RJ Toonen. 2014. Phylogeography unplugged: comparative surveys in the genomic era. Bulletin of Marine Science 90(1): 13-46. Bracken-Grissom, HD, ST Ahyong, RD Wilkinson, RM Feldmann, CE Schweitzer, JW Breinholt, M Bendall, F Palero, T-Y Chan, DL Felder, R Robles, K-H Chu, L-M Tsang, D Kim, JW Martin, & KA Crandall. 2014. The emergence of lobsters: Phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida). Systematic Biology 63(4):457-479. doi:10.1093/sysbio/syu008 Brady, SG, BL Fisher, TR Schultz, & PS Ward. 2014. The rise of the army ants: Diversification of the specialized predatory doryline ants. BMC Evolutionary Biology 14:e93. doi: 10.1186/1471-2148-14-93 Brix, S, F Leese, T Riehl & TC Kihara. 2014. A new genus and new species of Desmosomatidae Sars, 1897 (Isopoda) from the east South-Atlantic abyss described by means of integrative taxonomy. Marine Biodiversity: online 3 May 2014. DOI: 10.1007/s12526-014-0218-3. Buffington, ML, E Perkovsky, & SG Brady . 2014. The description of Rovnoeucoila typanomorphaBuffington & Perkovsky, a new genus and species of fossil eucoiline, with observations on the asynchronous evolution of Diglyphosematini (Hymenoptera: Figitidae: Eucoilinae). Proceedings of the Entomological Society of Washington 116: 243–254. doi: 10.4289/0013-8797.116.3.243 Callicrate, T, RB Dikow, JW Thomas, JC Mullikin, ED Jarvis, RC Fleischer & NISC Comparative Sequencing Program. 2014. Genomic resources for the endangered Hawaiian honeycreepers. BMC Genomics 15: 1098. doi: 10.1186/1471-2164-15-1098. Chen, H, S Sun, JL Norenburg, & P Sundberg. 2014. Mutation and selection cause codon usage and bias in mitochondrial genomes of ribbon worms (Nemertea). PLoS ONE 9: e85631. doi:10.1371/journal.pone.0085631 Chen, J, J Zhao, DL Erickson, N Xia & WJ Kress. 2014. Testing DNA barcodes in closely related species of Curcuma (Zingiberaceae) from Myanmar and China. Molecular Ecology Resources: early view. doi: 10.1111/1755-0998.12319. Chin, S-W, J Shaw, R Haberle, J Wen & D Potter. 2014. Diversification of almonds, peaches, plums and cherries - molecular systematics and biogeographic history of Prunus (Rosaceae). Molecular Phylogenetics & Evolution 76: 34-48. doi:10.1016/j.ympev.2014.02.024 Cialdella, AM, SM Sede, K Romaschenko, PM Peterson, RJ Soreng, FO Zuloaga & O Morrone. 2014. Phylogeny of Nassella (Stipeae, Pooideae, Poaceae) based on analyses of chloroplast and nuclear ribosomal DNA and morphology. Systematic Botany 39: 814−828. dx.doi.org/10.1600/036364414X681419 Cochran, AT, J Prado & E Schuettpelz. 2014. Tryonia, a new taenitidoid fern genus segregated from Jamesonia and Eriosorus (Pteridaceae). PhytoKeys 35: 23–43. Connolly, SR, MA MacNeil, MJ Caley, E Cripps, M Hisano, LM Thibaut, BD Bhattacharya, L Benedetti- Cecchi, RE Brainard, A Brandt, F Bulleri, KE Ellingsen, S Kaiser, N Knowlton, I Kröncke, K Linse, E Maggi, TD O'Hara, L Plaisance, GCB Poore, SK Sarkar, KK Satpathy, U Schückel, A Williams & RS Wilson. 2014. Commonness and rarity in the marine biosphere. Proceedings of the National Academy of Sciences, USA: in press. Conway, KW, CC Baldwin & MD White. 2014. Cryptic diversity and venom glands in western Atlantic clingfishes of the genus Acyrtus (Teleostei: Gobiesocidae). PLoS ONE 9(5): e97664. Davies, N, D Field, L Amaral-Zettler, MS Clark, J Deck, A Drummond, DP Faith, J Geller, J Gilbert, FO Glockner, PR Hirsch, J-A Leong, CP Meyer , et al & GOs-COS. 2014. The founding charter of the Genomic Observatories Network. GigaScience 3:2. Deeds, JR, SM Handy, F Fry Jr., H Granade, JT Williams, M Powers, R Shipp & LA Weigt. 2014. Protocol for building a reference standard sequence library for DNA-based seafood identification. Journal of AOAC International 97(6): 1-14. doi: 10.5740/jaoacint.14-111 Delrieu-Trottin, E, JT Williams & S Planes. 2014. Macropharyngodon pakoko, a new species of wrasse (Teleostei: Labridae) endemic to the Marquesas Islands, French Polynesia. Zootaxa 3857 (3): 433– 443. https://dx.doi.org/10.11646/zootaxa.3857.3.6 Erickson, DL, FA Jones, NG Swenson, N Pei, N Bourg, W Chen, SJ Davies, X Ge, Z Hao, RW Howe, C-L Huang, A Larson, S Lum, JA Lutz, K Ma, M Meegaskumbura, X Mi, JD Parker, I Fang-Sun, J Wright, AT Wolf, W Ye, D Xing, JK Zimmerman & WJ Kress. 2014. Comparative evolutionary diversity and phylogenetic structure across multiple forest dynamics plots: a mega-phylogeny approach. Frontiers in Genetics: doi: 10.3389/fgene.2014.00358. Escovar, JE, R González, ML Quiñones, RC Wilkerson, F Ruiz, BA Harrison. 2014. Morphology of the larvae, male genitalia and DNA sequences of Anopheles (Kerteszia) pholidotus (Diptera: Culicidae) from Colombia. Mem Inst Oswaldo Cruz, Rio de Janeiro: 1-7, 2014. Faircloth, BC, MG Branstetter, ND White & SG Brady . 2014. Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera. Molecular Ecology Resources DOI: 10.1111/1755-0998.12328. Faulde, MK, LM Rueda & BA Kaireh. 2014. First record of the Asian malaria vector Anopheles stephensi and its possible role in resurgence of malaria in Djibouti, Horn of Africa (Diptera, Culicidae). Acta Tropica 139: 39-43. Foley, DH, M-Y Linton, JF Ruiz-Lopez, JE Conn, MAM Sallum, MM Póvoa, E Bergo, I Sucupira & RC Wilkerson. 2014. Using occurrence data to explore the evolution and disease importance of species within the Neotropical Anopheles albitarsis group (Diptera, Culicidae). Journal of Vector Ecology 39(1): 168-181. doi:10.1111/j.1948-7134.2014.12084.x Funk, VA, G Sancho, N Roque, CL Kelloff, I Ventosa-Rodríguez, M Diazgranado, JM Bonifacino & R Chan. 2014. A Phylogeny of the Gochnatieae: Understanding a critically placed tribe in the Compositae. Taxon. 63(4): 859–882. Geller, J, CP Meyer , M Parker & H Hawk. 2014. Redesign of PCR primers for mitochondrial cytochrome c oxidase subunit I for marine invertebrates and application in all-taxa biotic surveys. Molecular Ecology Resources: In press. Grossmann MM, AG Collins & DJ Lindsay. 2014. Description of the eudoxid stages of Lensia havock and Lensia leloupi (Cnidaria: Siphonophora: Calycophorae), with a review of all known Lensia eudoxid bracts. Biodiversity & Systematics: in press. Gunay, F, B Alten, F Simsek, A Aldemir & Y-M Linton. 2014. Barcoding Turkish Culex mosquitoes to facilitate arbovirus vector incrimination studies reveals hidden diversity and new potential vectors. Acta Tropica; (available online). DOI: 10.1016/j.actatropica.2014.10.013 Harasewych, MG. 2014. Systematics and phylogeography of Cerion sensu stricto (Mollusca: Gastropoda: Pulmonata: Cerionidae) from Aruba, Curaçao and Bonaire. Journal of Molluscan Studies: in press. Harasewych, MG & RE Petit. 2014. Morphology and systematic relationships of Brocchinia clenchiPetit, 1986 (Mollusca, Caenogastropoda, Cancellariidae) from the Azores. In: Martins, AMF (ed.) The Marine Fauna and Flora of the Azores (Proceedings of the 4rd International Workshop of Malacology and Marine Biology, São Miguel, 2011). Açoreana, Supplement: in press. Horn, JW, Z Xi, R Riina, JA Peirson, Y Yang, BL Dorsey, PE Berry, CC Davis & KJ Wurdack. 2014. Evolutionary bursts in Euphorbia (Euphorbiaceae) are linked with photosynthetic pathway. Evolution 68(12): 3485-3504. doi:10.1111/evo.12534 Hubert, N, B Espiau, C Meyer & S Planes. 2014. Identifying ichtyoplankton of a coral
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