Noel T. Keen 1940–2002
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Soybean Resistance Genes Specific for Different Pseudomonas Syringue Avirwlence Genes Are Auelic, Or Closely Linked, at the RPG1 Locus
Copyright 0 1995 by the Genetics Society of America Soybean Resistance Genes Specific for Different Pseudomonas syringue Avirwlence Genes are AUelic, or Closely Linked, at the RPG1 Locus Tom Ashfield,* Noel T. Keen,+ Richard I. Buzzell: and Roger W. Innes* *Department of Biology, Indiana University, Bloomington, Indiana 47405, $Department of Plant Pathology, University of California, Riverside, California 92521, and fAgriculture & Agri-food Canada, Research Station, Harrow, Ontario NOR lG0, Canada Manuscript received July6, 1995 Accepted for publication September 11, 1995 ABSTRACT RPGl and RPMl are disease resistance genes in soybean and Arabidopsis, respectively, that confer resistance to Pseudomonas syringae strains expressing the avirulence gene awB. RPMl has recently been demonstrated to have a second specificity, also conferring resistance to P. syringae strains expressing [email protected] we show that alleles, or closely linked genes, exist at the RPGl locus in soybean that are specific for either awB or awR@ml and thus can distinguish between these two avirulence genes. ESISTANCE displayed by particular plant cultivars genes specific to avirulence genes of both the soybean R to specific races of a pathogen is often mediated pathogen Psgand the tomato pathogen Pst. The inabil- by single dominant resistance genes (R-genes). Typi- ity of Pstto cause disease in any soybean cultivarcan be cally, these R-genes interact with single dominant “avir- explained, atleast in part, by the presence of a battery of ulence” (aw) genes in the pathogen. Such specific in- resistance genes in soybean that correspond to one or teractions between races of pathogens and cultivars of more avirulence genes present in all Pst strains. -
Pseudomonas Syringae Subsp. Savastanoi (Ex Smith) Subsp
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, Apr. 1982, p. 146-169 Vol. 32. No. 2 0020-771 3/82/020166-O4$02.OO/O Pseudomonas syringae subsp. savastanoi (ex Smith) subsp. nov., nom. rev., the Bacterium Causing Excrescences on Oleaceae and Neriurn oleander L. J. D. JANSE Department of Bacteriology, Plant Protection Service, 6700 HC, Wageningen, The Netherlands From a study of the so-called bacterial canker of ash, caused by a variant of “Pseudomonas savastanoi” (Smith) Stevens, it became evident that this variant and the variants of “P. savastanoi” which cause olive knot and oleander knot can be distinguished from one another on the basis of their pathogenicity and host range. All isolates of “P. savastanoi” were recently classified by Dye et al. (Plant Pathol. 59:153-168,1980) as members of a single pathovar of P. syringae van Hall. It appears, however, that these isolates differ sufficiently from the other members of P. syringae to justify subspecies rank for them. The following classification and nomenclature are therefore proposed: Pseudomonas syringae subsp. savastanoi (ex Smith) subsp. nov., nom. rev., to include the olive pathogen (pathovar oleae), the ash pathogen (pathovar fraxini), and the oleander pathogen (pathovar nerii). The type strain of P. syringae subsp. savastanoi is ATCC 13522 (= NCPPB 639). “Pseudomonas savastanoi” (Smith 1908) Ste- mended in the International Code of Nomencla- vens 1913 was previously used as the name of ture of Bacteria (8). the bacterium which causes pernicious excres- According to the available data, the present cences on several species of the Oleaceae. classificationand nomenclature of the organisms (Names in quotation marks are not on the Ap- under discussion are inadequate. -
Erwinia Chrysanthemi the Facts
Erwinia chrysanthemi (Dickeya spp.) The Facts Compiled for the British Potato Council by; Dr John Elphinstone, Central Science Laboratory Dr Ian Toth, Scottish Crop Research Institute Erwinia chrysanthemi (Dickeya spp.) – The Facts Contents Executive Summary 1. Introduction 2. The pathogen 3. Symptoms • Distinction from symptoms caused by P. atrosepticum and P. carotovorum • Distinction from other diseases 4. Geographical distribution • Presence in GB • Europe • Overseas 5. Biology, survival and dissemination of the pathogen • Factors influencing disease development • Dissemination • Survival 6. Assessment of Risk and Economic Loss • Quarantine status • Potential GB economic impact • Economic impact to overseas markets 7. Control • Statutory (certification) • On farm • Specific approaches and control measures in other countries • Best practice guide 8. Diagnostic methods 9. Knowledge gaps 10. Threats, Opportunities and Recommendations 11. References 12. Glossary of terms 2 © British Potato Council 2007 Erwinia chrysanthemi (Dickeya spp.) – The Facts Executive Summary The pathogen Erwinia chrysanthemi (Echr) is a complex of different bacteria now reclassified as species of Dickeya. While D. dadantii and D. zeae (formerly Echr biovar 3 or 8) are pathogens of potato in warmer countries, D. dianthicola (formerly Echr biovar 1 and 7) appears to be spreading on potatoes in Europe. The revised nomenclature of these pathogens has distinguished them from other soft rot erwiniae (including P. atrosepticum and P. carotovorum). Symptoms Symptoms of soft rot disease on potato tubers are similar whether caused by Dickeya or Pectobacterium spp. In the field, disease develops following movement of either pathogen from the stem base. Whereas P. atrosepticum typically causes blackleg symptoms under cool wet conditions, symptoms due to Dickeya spp. -
Phytophthora Damping Off and Root Rot of Soybean Anne E
FACT SHEET Agriculture and Natural Resources AC-17-09 Phytophthora Damping Off and Root Rot of Soybean Anne E. Dorrance and Dennis Mills Department of Plant Pathology The Ohio State University hytophthora damping off and root rot have been increased use of no-tillage and reduced tillage residue Pthe most destructive diseases of soybeans in Ohio management systems, however, Phytophthora damp- for more than 50 years. When rainfall saturates fields ing off and root rot has become a serious problem in soon after planting, severe seedling kill can result other areas of Ohio as well. The soil-borne pathogen in yield losses greater than 50% in individual fields. that causes this disease (Phytophthora sojae) can be Phytophthora seed rot and pre-emergence damping found in most agricultural soils in the state. off are one of the major causes of replanting on heavy soils. Historically, statewide yield losses average 11% Symptoms in years with wet springs and 8% in years with more Phytophthora normal planting seasons. can attack soy- The disease is most severe in poorly drained soils bean plants at any with high clay content. Traditionally, the northwest stage of develop- section of the state has had severe problems with ment. Symptoms Phytophthora damping off and root rot. With the in young plants include rapid yel- lowing and wilt- ing accompanied by a soft rot and collapse of the root. More ma- ture plants gener- ally show reduced vigor and may be gradually killed as the growing Figure 2. Phytophthora stem season progresses. rot—adult plant showing stem Figure 1. -
Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco
microorganisms Article Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco Saïd Oulghazi 1,2, Mohieddine Moumni 1, Slimane Khayi 3 ,Kévin Robic 2,4, Sohaib Sarfraz 5, Céline Lopez-Roques 6,Céline Vandecasteele 6 and Denis Faure 2,* 1 Department of Biology, Faculty of Sciences, Moulay Ismaïl University, 50000 Meknes, Morocco; [email protected] (S.O.); [email protected] (M.M.) 2 Institute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, 91198 Gif-sur-Yvette, France; [email protected] 3 Biotechnology Research Unit, CRRA-Rabat, National Institut for Agricultural Research (INRA), 10101 Rabat, Morocco; [email protected] 4 National Federation of Seed Potato Growers (FN3PT-RD3PT), 75008 Paris, France 5 Department of Plant Pathology, University of Agriculture Faisalabad Sub-Campus Depalpur, 38000 Okara, Pakistan; [email protected] 6 INRA, US 1426, GeT-PlaGe, Genotoul, 31320 Castanet-Tolosan, France; [email protected] (C.L.-R.); [email protected] (C.V.) * Correspondence: [email protected] Received: 28 April 2020; Accepted: 9 June 2020; Published: 13 June 2020 Abstract: Dickeya and Pectobacterium pathogens are causative agents of several diseases that affect many crops worldwide. This work investigated the species diversity of these pathogens in Morocco, where Dickeya pathogens have only been isolated from potato fields recently. To this end, samplings were conducted in three major potato growing areas over a three-year period (2015–2017). Pathogens were characterized by sequence determination of both the gapA gene marker and genomes using Illumina and Oxford Nanopore technologies. -
Roq1 Mediates Recognition of the Xanthomonas and Pseudomonas Effector Proteins Xopq and Hopq1
The Plant Journal (2017) 92, 787–795 doi: 10.1111/tpj.13715 Roq1 mediates recognition of the Xanthomonas and Pseudomonas effector proteins XopQ and HopQ1 Alex Schultink, Tiancong Qi, Arielle Lee, Adam D. Steinbrenner and Brian Staskawicz* Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA Received 2 July 2017; revised 30 August 2017; accepted 4 September 2017; published online 11 October 2017. *For correspondence (e-mail [email protected]). SUMMARY Xanthomonas spp. are phytopathogenic bacteria that can cause disease on a wide variety of plant species resulting in significant impacts on crop yields. Limited genetic resistance is available in most crop species and current control methods are often inadequate, particularly when environmental conditions favor dis- ease. The plant Nicotiana benthamiana has been shown to be resistant to Xanthomonas and Pseudomonas due to an immune response triggered by the bacterial effector proteins XopQ and HopQ1, respectively. We used a reverse genetic screen to identify Recognition of XopQ 1 (Roq1), a nucleotide-binding leucine-rich repeat (NLR) protein with a Toll-like interleukin-1 receptor (TIR) domain, which mediates XopQ recognition in N. benthamiana. Roq1 orthologs appear to be present only in the Nicotiana genus. Expression of Roq1 was found to be sufficient for XopQ recognition in both the closely-related Nicotiana sylvestris and the dis- tantly-related beet plant (Beta vulgaris). Roq1 was found to co-immunoprecipitate with XopQ, suggesting a physical association between the two proteins. Roq1 is able to recognize XopQ alleles from various Xan- thomonas species, as well as HopQ1 from Pseudomonas, demonstrating widespread potential application in protecting crop plants from these pathogens. -
Isolation and Identification of Bacterial Glum Blotch and Leaf Blight on Wheat (Triticum Aestivum L.) in Iran
African Journal of Biotechnology Vol. 9 (20), pp. 2860-2865, 17 May, 2010 Available online at http://www.academicjournals.org/AJB ISSN 1684–5315 © 2010 Academic Journals Full Length Research Paper Isolation and identification of bacterial glum blotch and leaf blight on wheat (Triticum aestivum L.) in Iran Mostafa Niknejad Kazempour1*, Maesomeh Kheyrgoo1, Hassan Pedramfar1 and Heshmat Rahimian2 1Department Plant Pathology, Faculty of Agricultural Sciences, University of Guilan, Rasht – Iran. 2Department Plant Pathology, Faculty of Agricultural Sciences, Mazanderan University, Sary – Iran. Accepted 27 March, 2009 Basal glume blotch and leaf blight of wheat caused by Pseudomonas syringae pv. atrofaciens and P. syringae pv. syringae respectively are the bacterial diseases of wheat in Iran. The disease causes damage on wheat which leads to lots of yield and crop losses in the host plants. During the spring and summer of 2005-2006 different wheat fields in Guilan province (Roodsar, Langrud, Rostamabad, loshan, and Roodbar) were surveyed. Samples were collected from infected wheats with glumes blotch and leaf blight. Infected tissues were washed with sterile distilled water and crushed in peptone water. Then 50 µl of the extract were cultured on King’s B and NA media containing cyclohexamide (50 µg/ml). After 48 to 72 h, bacterial colonies were selected and purified. On the basis of morphological, physiological and biochemical characteristics, pathogenicity and PCR with specific primers, the isolated were placed in two groups. The first group consists of 20 isolates that caused leaf blight, identified as P. syringae pv. Syringae, while the second group is made up of 18 isolates that caused basal glumes blotch identified as P. -
Characteristic of Pseudomonas Syringae Pv. Atrofaciens Isolated from Weeds of Wheat Field
applied sciences Article Characteristic of Pseudomonas syringae pv. atrofaciens Isolated from Weeds of Wheat Field Liudmyla Butsenko 1, Lidiia Pasichnyk 1 , Yuliia Kolomiiets 2, Antonina Kalinichenko 3,* , Dariusz Suszanowicz 3 , Monika Sporek 4 and Volodymyr Patyka 1 1 Zabolotny Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, 03143 Kyiv, Ukraine; [email protected] (L.B.); [email protected] (L.P.); [email protected] (V.P.) 2 Department of Ecobiotechnology and Biodiversity, National University of Life and Environmental Sciences of Ukraine, 03143 Kyiv, Ukraine; [email protected] 3 Institute of Environmental Engineering and Biotechnology, University of Opole, 45-040 Opole, Poland; [email protected] 4 Institute of Biology, University of Opole, 45-040 Opole, Poland; [email protected] * Correspondence: [email protected]; Tel.: +48-787-321-587 Abstract: The aim of this study was the identification of the causative agent of the basal glume rot of wheat Pseudomonas syringae pv. atrofaciens from the affected weeds in wheat crops, and determination of its virulent properties. Isolation of P. syringae pv. atrofaciens from weeds of wheat crops was carried out by classical microbiological methods. To identify isolated bacteria, their morphological, cultural, biochemical, and serological properties as well as fatty acids and Random Amplification of Polymorphic DNA (RAPD)-PCR (Polymerase chain reaction) profiles with the OPA-13 primer were studied. Pathogenic properties were investigated by artificial inoculation of wheat plants and weed plants, from which bacteria were isolated. For the first time, bacteria that are virulent both for weeds and wheat were isolated from weeds growing in wheat crops. -
Characterization of Bacterial Communities Associated
www.nature.com/scientificreports OPEN Characterization of bacterial communities associated with blood‑fed and starved tropical bed bugs, Cimex hemipterus (F.) (Hemiptera): a high throughput metabarcoding analysis Li Lim & Abdul Hafz Ab Majid* With the development of new metagenomic techniques, the microbial community structure of common bed bugs, Cimex lectularius, is well‑studied, while information regarding the constituents of the bacterial communities associated with tropical bed bugs, Cimex hemipterus, is lacking. In this study, the bacteria communities in the blood‑fed and starved tropical bed bugs were analysed and characterized by amplifying the v3‑v4 hypervariable region of the 16S rRNA gene region, followed by MiSeq Illumina sequencing. Across all samples, Proteobacteria made up more than 99% of the microbial community. An alpha‑proteobacterium Wolbachia and gamma‑proteobacterium, including Dickeya chrysanthemi and Pseudomonas, were the dominant OTUs at the genus level. Although the dominant OTUs of bacterial communities of blood‑fed and starved bed bugs were the same, bacterial genera present in lower numbers were varied. The bacteria load in starved bed bugs was also higher than blood‑fed bed bugs. Cimex hemipterus Fabricus (Hemiptera), also known as tropical bed bugs, is an obligate blood-feeding insect throughout their entire developmental cycle, has made a recent resurgence probably due to increased worldwide travel, climate change, and resistance to insecticides1–3. Distribution of tropical bed bugs is inclined to tropical regions, and infestation usually occurs in human dwellings such as dormitories and hotels 1,2. Bed bugs are a nuisance pest to humans as people that are bitten by this insect may experience allergic reactions, iron defciency, and secondary bacterial infection from bite sores4,5. -
Review Ten Things to Know About Oomycete Effectors
MOLECULAR PLANT PATHOLOGY (2009) 10(6), 795–803 DOI: 10.1111/J.1364-3703.2009.00593.X Review Ten things to know about oomycete effectors SEBASTIAN SCHORNACK1, EDGAR HUITEMA1, LILIANA M. CANO1, TOLGA O. BOZKURT1, RICARDO OLIVA1, MIREILLE VAN DAMME1, SIMON SCHWIZER1, SYLVAIN RAFFAELE1, ANGELA CHAPARRO-GARCIA1, RHYS FARRER1, MARIA EUGENIA SEGRETIN1, JORUNN BOS1, BRIAN J. HAAS2, MICHAEL C. ZODY2, CHAD NUSBAUM2, JOE WIN1, MARCO THINES1,3 AND SOPHIEN KAMOUN1,* 1The Sainsbury Laboratory, Norwich, NR4 7UH, UK 2Broad Institute of MIT and Harvard, Cambridge, MA 02141, USA 3University of Hohenheim, Institute of Botany 210, 70593 Stuttgart, Germany sity of Wales, Bangor, UK, summed up the general feeling by SUMMARY declaring the oomycetes to be a ‘fungal geneticist’s nightmare’ Long considered intractable organisms by fungal genetic (Shaw, 1983). research standards, the oomycetes have recently moved to the In 1984, 1 year after David Shaw’s gloomy quip, Brian centre stage of research on plant–microbe interactions. Recent Staskawicz, Doug Dahlbeck and Noel Keen reported the first work on oomycete effector evolution, trafficking and function cloning of a plant pathogen avirulence gene from the bacterium has led to major conceptual advances in the science of plant Pseudomonas syringae pv. glycinea (Staskawicz et al., 1984). pathology. In this review, we provide a historical perspective on This landmark event ushered in a golden age for research into oomycete genetic research and summarize the state of the art in plant–microbe interactions during which bacteria and a handful effector biology of plant pathogenic oomycetes by describing of fungi became the organisms of choice for molecular studies what we consider to be the 10 most important concepts about on host specificity and disease resistance (see other reviews in oomycete effectors.mpp_593 795..804 this issue). -
Sotwp 2016.Pdf
STATE OF THE WORLD’S PLANTS OF THE WORLD’S STATE 2016 The staff and trustees of the Royal Botanic Gardens, Kew and the Kew Foundation would like to thank the Sfumato Foundation for generously funding the State of the World’s Plants project. State of the World’s Plants 2016 Citation This report should be cited as: RBG Kew (2016). The State of the World’s Plants Report – 2016. Royal Botanic Gardens, Kew ISBN: 978-1-84246-628-5 © The Board of Trustees of the Royal Botanic Gardens, Kew (2016) (unless otherwise stated) Printed on 100% recycled paper The State of the World’s Plants 1 Contents Introduction to the State of the World’s Plants Describing the world’s plants 4 Naming and counting the world’s plants 10 New plant species discovered in 2015 14 Plant evolutionary relationships and plant genomes 18 Useful plants 24 Important plant areas 28 Country focus: status of knowledge of Brazilian plants Global threats to plants 34 Climate change 40 Global land-cover change 46 Invasive species 52 Plant diseases – state of research 58 Extinction risk and threats to plants Policies and international trade 64 CITES and the prevention of illegal trade 70 The Nagoya Protocol on Access to Genetic Resources and Benefit Sharing 76 References 80 Contributors and acknowledgments 2 Introduction to the State of the World’s Plants Introduction to the State of the World’s Plants This is the first document to collate current knowledge on as well as policies and international agreements that are the state of the world’s plants. -
A Secreted Metal-Binding Protein Protects Necrotrophic Phytopathogens from Reactive Oxygen Species
ARTICLE https://doi.org/10.1038/s41467-019-12826-x OPEN A secreted metal-binding protein protects necrotrophic phytopathogens from reactive oxygen species Lulu Liu1,5, Virginie Gueguen-Chaignon2,5, Isabelle R Gonçalves1,5, Christine Rascle1, Martine Rigault3, Alia Dellagi3, Elise Loisel1, Nathalie Poussereau1, Agnès Rodrigue 1, Laurent Terradot 4*& Guy Condemine 1* 1234567890():,; Few secreted proteins involved in plant infection common to necrotrophic bacteria, fungi and oomycetes have been identified except for plant cell wall-degrading enzymes. Here we study a family of iron-binding proteins that is present in Gram-negative and Gram-positive bacteria, fungi, oomycetes and some animals. Homolog proteins in the phytopathogenic bacterium Dickeya dadantii (IbpS) and the fungal necrotroph Botrytis cinerea (BcIbp) are involved in plant infection. IbpS is secreted, can bind iron and copper, and protects the bacteria against H2O2- induced death. Its 1.7 Å crystal structure reveals a classical Venus Fly trap fold that forms dimers in solution and in the crystal. We propose that secreted Ibp proteins binds exogenous metals and thus limit intracellular metal accumulation and ROS formation in the microorganisms. 1 Microbiologie Adaptation et Pathogénie, UMR 5240 CNRS, Université de Lyon, INSA de Lyon, 69622 Villeurbanne, France. 2 Protein Science Facility, SFR BioSciences, UMS3444/US8, 69367 Lyon, France. 3 Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech, 78026 Versailles, France. 4 Molecular Microbiology and Structural Biochemistry, UMR