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Full Curriculum Vitae
C. R. Smith July 2017 Curriculum Vitae CRAIG RANDALL SMITH Address: Department of Oceanography University of Hawaii at Manoa 1000 Pope Road Honolulu, HI 96822 Telephone: 808-956-7776 email: [email protected] Education: B.S., 1977, with high honors, Biological Science, Michigan State University Ph.D., Dec 1983, Biological Oceanography, University of California at San Diego, Scripps Institution of Oceanography Professional Experience: 1975-1976: Teaching Assistant, Biological Science Program, Michigan State University 1976: Summer Student Fellow, Woods Hole Oceanographic Institution 1976-1977: Research Assistant, Microbiology Department, Michigan State University 1977-1981: Research Assistant, Program for the Study of Sub- Seabed Disposal of Radioactive Waste, Scripps Institution of Oceanography 1981-1983: Associate Investigator, O.N.R. grant entitled, "The Impact of Large Organic Falls on a Bathyal Benthic Community," Scripps Institution of Oceanography 1983-1984: Postdoctoral Scholar, Woods Hole Oceanographic Institution 1985-1986: Postdoctoral Research Associate, School of Oceanography, University of Washington 1986-1988: Research Assistant Professor, School of Oceanography, University of Washington 1988-1995: Associate Professor, Department of Oceanography, University of Hawaii at Manoa 1995-1998, 2004-2007: Chair, Biological Oceanography Division, University of Hawaii at Manoa 1997-1998, 2006-2007: Associate Chair, Department of Oceanography 1995-present: Professor, Department of Oceanography, University of Hawaii at Manoa Major Research -
Biodiversity and Trophic Ecology of Hydrothermal Vent Fauna Associated with Tubeworm Assemblages on the Juan De Fuca Ridge
Biogeosciences, 15, 2629–2647, 2018 https://doi.org/10.5194/bg-15-2629-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge Yann Lelièvre1,2, Jozée Sarrazin1, Julien Marticorena1, Gauthier Schaal3, Thomas Day1, Pierre Legendre2, Stéphane Hourdez4,5, and Marjolaine Matabos1 1Ifremer, Centre de Bretagne, REM/EEP, Laboratoire Environnement Profond, 29280 Plouzané, France 2Département de sciences biologiques, Université de Montréal, C.P. 6128, succursale Centre-ville, Montréal, Québec, H3C 3J7, Canada 3Laboratoire des Sciences de l’Environnement Marin (LEMAR), UMR 6539 9 CNRS/UBO/IRD/Ifremer, BP 70, 29280, Plouzané, France 4Sorbonne Université, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France 5CNRS, UMR7144, Station Biologique de Roscoff, 29680 Roscoff, France Correspondence: Yann Lelièvre ([email protected]) Received: 3 October 2017 – Discussion started: 12 October 2017 Revised: 29 March 2018 – Accepted: 7 April 2018 – Published: 4 May 2018 Abstract. Hydrothermal vent sites along the Juan de Fuca community structuring. Vent food webs did not appear to be Ridge in the north-east Pacific host dense populations of organised through predator–prey relationships. For example, Ridgeia piscesae tubeworms that promote habitat hetero- although trophic structure complexity increased with ecolog- geneity and local diversity. A detailed description of the ical successional stages, showing a higher number of preda- biodiversity and community structure is needed to help un- tors in the last stages, the food web structure itself did not derstand the ecological processes that underlie the distribu- change across assemblages. -
Comparative Composition, Diversity and Trophic Ecology of Sediment Macrofauna at Vents, Seeps and Organic Falls
Review Comparative Composition, Diversity and Trophic Ecology of Sediment Macrofauna at Vents, Seeps and Organic Falls Angelo F. Bernardino1*, Lisa A. Levin2, Andrew R. Thurber3, Craig R. Smith4 1 Departamento de Oceanografia e Ecologia, Universidade Federal do Espı´rito Santo, Goiabeiras, Vito´ ria, Esp´ı rito Santo, Brazil, 2 Center for Marine Biodiversity and Conservation; Integrative Oceanography Division, Scripps Institution of Oceanography, La Jolla, California, United States of America,3 College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, Oregon, United States of America,4 Department of Oceanography, School of Ocean and Earth Science and Technology, University of Hawaii, Honolulu, Hawaii, United States of America communities. Sulfide is toxic to most metazoan taxa [1,2], Abstract: Sediments associated with hydrothermal vent- although some sediment-dwelling taxa have adapted to conditions ing, methane seepage and large organic falls such as of low oxygen and appear capable of tolerating the presence of whale, wood and plant detritus create deep-sea networks sulfide. Due to high local production, metazoans in reducing of soft-sediment habitats fueled, at least in part, by the sediments in the deep sea are often released from the extreme food oxidation of reduced chemicals. Biological studies at limitation prevalent in the background community (e.g. [3]). deep-sea vents, seeps and organic falls have looked at Instead, chemical toxicity may drive infaunal community macrofaunal taxa, but there has yet to be a systematic comparison of the community-level attributes of sedi- structure. In this meta-analysis we ask which taxa are common ment macrobenthos in various reducing ecosystems. -
Annelida: Dorvilleidae) Associated with the Coral Lophelia Pertusa (Anthozoa: Caryophylliidae)
ARTICLE A new species of Ophryotrocha (Annelida: Dorvilleidae) associated with the coral Lophelia pertusa (Anthozoa: Caryophylliidae) Vinicius da Rocha Miranda¹²; Andrielle Raposo Rodrigues¹³ & Ana Claudia dos Santos Brasil¹⁴ ¹ Universidade Federal Rural do Rio de Janeiro (UFRRJ), Instituto de Ciências Biológicas e da Saúde (ICBS), Departamento de Biologia Animal, Laboratório de Polychaeta. Seropédica, RJ, Brasil. ² ORCID: http://orcid.org/0000-0002-4591-184X. E-mail: [email protected] (corresponding author) ³ ORCID: http://orcid.org/0000-0001-9152-355X. E-mail: [email protected] ⁴ ORCID: http://orcid.org/0000-0002-0611-9948. E-mail: [email protected] Abstract. Ophryotrocha is the most speciose genus within Dorvilleidae, with species occurring in a great variety of environments around the globe. In Brazil, records of Ophryotrocha are scarce and no specific identification is provided for any of the records. Herein we describe a new species of Dorvilleidae, Ophryotrocha zitae sp. nov. Adult and larval specimens were found in the axis of a fragment of the cold-water coral Lophelia pertusa, sampled off São Paulo’s coast, at a depth of 245 m. Both forms are described and illustrated. This new species resembles O. puerilis, O. adherens and O. eutrophila, but can be distinguished based on differences in its mandible and on chaetae shape and arrangement. Key-Words. Epibiont; Cold-water Coral; Deep-sea; Eunicida, Associated fauna. INTRODUCTION sette glands on the posterior region of the body (Ockelmann & Åkesson, 1990; Heggoy et al., 2007; The Family Dorvilleidae is comprised of 38 val‑ Paxton & Åkesson, 2011). These species also bear id genera, many of which are monospecific (Read, a complex buccal apparatus comprising a pair of 2016) and others, despite more specious, pres‑ mandibles and maxillae, the latter being either ent evident morphological homogeny (Rouse & “P‑type” or “K‑type”, and the presence of one or Pleijel, 2001). -
Comparative Phylogeography of Two Symbiotic Dorvilleid Polychaetes (Iphitime Cuenoti and Ophryotrocha Mediterranea) with Contrasting Host and Bathymetric Patterns
Comparative phylogeography of two symbiotic dorvilleid polychaetes (Iphitime cuenoti and Ophryotrocha mediterranea) with contrasting host and bathymetric patterns Patricia Lattig (PL)1, Isabel Muñoz (IM)2, Daniel Martin (DM)3, Pere Abelló (PA)4, Annie Machordom (AM)1 1 Museo Nacional de Ciencias Naturales (MNCN-CSIC), C. José Gutiérrez Abascal 2, 28006, Madrid-Spain 2. Instituto Español de Oceanografía, Centro Oceanográfico de Santander (IEO). Promontorio San Martín s/n. 39004, Santander (CANTABRIA)-ESPAÑA 3. Centre d’Estudis Avançats de Blanes (CEAB–CSIC), Carrer d’accés a la Cala Sant Francesc 14, 17300 Blanes (Girona), Catalunya, Spain. 4. Institut de Ciències del Mar (ICM-CSIC), Passeig Marítim de la Barceloneta, 37-49. E-08003 Barcelona, Catalunya, Spain. Corresponding author: PL. Museo Nacional de Ciencias Naturales (MNCN-CSIC), C. José Gutiérrez Abascal 2, 28006, Madrid-Spain. Corresponding mail address: [email protected], fax: 915645078 Running tittle: Phylogeography of two crab-associated Dorvilleidae Abstract Two symbiotic polychaetes living in brachyuran crabs in the western Mediterranean and nearby Atlantic were analysed to determine their phylogeographical patterns and the possible effects of known oceanographic barriers in the study area. The analysed species live in hosts inhabiting well-differentiated depths, a factor which may be crucial for understanding the different patterns observed in each species. Iphitime cuenoti was found in four different host crabs between 100 and 600 m depth and showed some level of genetic homogeneity, reflected in a star-like haplotype network. Furthermore, barrier effects were not observed. In contrast, Ophryotrocha mediterranea was exclusively found in a single host crab species living between 600 and 1200 m depth. -
Systematics, Evolution and Phylogeny of Annelida – a Morphological Perspective
Memoirs of Museum Victoria 71: 247–269 (2014) Published December 2014 ISSN 1447-2546 (Print) 1447-2554 (On-line) http://museumvictoria.com.au/about/books-and-journals/journals/memoirs-of-museum-victoria/ Systematics, evolution and phylogeny of Annelida – a morphological perspective GÜNTER PURSCHKE1,*, CHRISTOPH BLEIDORN2 AND TORSTEN STRUCK3 1 Zoology and Developmental Biology, Department of Biology and Chemistry, University of Osnabrück, Barbarastr. 11, 49069 Osnabrück, Germany ([email protected]) 2 Molecular Evolution and Animal Systematics, University of Leipzig, Talstr. 33, 04103 Leipzig, Germany (bleidorn@ rz.uni-leipzig.de) 3 Zoological Research Museum Alexander König, Adenauerallee 160, 53113 Bonn, Germany (torsten.struck.zfmk@uni- bonn.de) * To whom correspondence and reprint requests should be addressed. Email: [email protected] Abstract Purschke, G., Bleidorn, C. and Struck, T. 2014. Systematics, evolution and phylogeny of Annelida – a morphological perspective . Memoirs of Museum Victoria 71: 247–269. Annelida, traditionally divided into Polychaeta and Clitellata, is an evolutionary ancient and ecologically important group today usually considered to be monophyletic. However, there is a long debate regarding the in-group relationships as well as the direction of evolutionary changes within the group. This debate is correlated to the extraordinary evolutionary diversity of this group. Although annelids may generally be characterised as organisms with multiple repetitions of identically organised segments and usually bearing certain other characters such as a collagenous cuticle, chitinous chaetae or nuchal organs, none of these are present in every subgroup. This is even true for the annelid key character, segmentation. The first morphology-based cladistic analyses of polychaetes showed Polychaeta and Clitellata as sister groups. -
Ophyryotrocha Puerilis
HELGOLANDER MEERESUNTERSUCHUNGEN Helgol~inder Meeresunters. 36, 215-222 (1983) Evaluation of the pair-culture effect in Ophryotrocha puerilis (Polychaeta: Dorvilleidae). II. Conditions for the moult of the upper jaw B. Kegel* & H.-D. Pfannenstiel Institut ffir Allgemeine Zoologie, Freie Universit8t Berlin; K6nigin-Luise-Str. 1-3, D-IO00 Berlin 33, Federal Republic of Germany ABSTRACT: The conditions for moult of the upper jaw of Ophryotrocha puerilis were determined in isolated individuals and in groups of various sizes. The frequency of formation of the complicated upper jaw in both isolated individuals and in groups varies to a considerable extent. Although formation of the upper jaw and sex reversal normally are associated processes, the relationship of these two processes is not very well understood. Histological investigations at the light microscopic level demonstrate that the dental apparatus is an elaboration of the ectodermal stomodaeum which is considered to be a highly specialized part of the cuticle in the pharyngeal region of the gut. INTRODUCTION The existence of jaws in the pharyngeal region of the foregut is a characteristic feature of eunicid polychaetes including the family Dorvilleidae. These structures are modified parts of the cuticle which are thick and sclerous. They represent elaborations of the ectodermal stomodaeum. The dental apparatus in the dorvilleid genus Ophryotrocha is composed of two rods (mandible) and two forceps-like maxillae with a number of maxillary plates connected to the maxillae (Fig. 4a). The maxillae and the plates are moulted from time to time. In at least two species the newly moulted jaw always is of the same appearance as the old one (O. -
Benthic Invertebrate Species Richness & Diversity At
BBEENNTTHHIICC INVVEERTTEEBBRRAATTEE SPPEECCIIEESSRRIICCHHNNEESSSS && DDIIVVEERRSSIITTYYAATT DIIFFFFEERRENNTTHHAABBIITTAATTSS IINN TTHHEEGGRREEAATEERR CCHHAARRLLOOTTTTEE HAARRBBOORRSSYYSSTTEEMM Charlotte Harbor National Estuary Program 1926 Victoria Avenue Fort Myers, Florida 33901 March 2007 Mote Marine Laboratory Technical Report No. 1169 The Charlotte Harbor National Estuary Program is a partnership of citizens, elected officials, resource managers and commercial and recreational resource users working to improve the water quality and ecological integrity of the greater Charlotte Harbor watershed. A cooperative decision-making process is used within the program to address diverse resource management concerns in the 4,400 square mile study area. Many of these partners also financially support the Program, which, in turn, affords the Program opportunities to fund projects such as this. The entities that have financially supported the program include the following: U.S. Environmental Protection Agency Southwest Florida Water Management District South Florida Water Management District Florida Department of Environmental Protection Florida Coastal Zone Management Program Peace River/Manasota Regional Water Supply Authority Polk, Sarasota, Manatee, Lee, Charlotte, DeSoto and Hardee Counties Cities of Sanibel, Cape Coral, Fort Myers, Punta Gorda, North Port, Venice and Fort Myers Beach and the Southwest Florida Regional Planning Council. ACKNOWLEDGMENTS This document was prepared with support from the Charlotte Harbor National Estuary Program with supplemental support from Mote Marine Laboratory. The project was conducted through the Benthic Ecology Program of Mote's Center for Coastal Ecology. Mote staff project participants included: Principal Investigator James K. Culter; Field Biologists and Invertebrate Taxonomists, Jay R. Leverone, Debi Ingrao, Anamari Boyes, Bernadette Hohmann and Lucas Jennings; Data Management, Jay Sprinkel and Janet Gannon; Sediment Analysis, Jon Perry and Ari Nissanka. -
Annelida: Dorvilleidae)
A Comprehensive Ultrastructure and Transcriptome Analyses of Early Regeneration in Ophryotrocha Xiamen Sp. Nov. (Annelida: Dorvilleidae) Ruanni Chen Minjiang University Irum Mukhtar Minjiang University Shurong Wei Minjiang University Siyi Wu Minjiang University Jianming Chen ( [email protected] ) Minjiang University https://orcid.org/0000-0003-0400-3092 Research article Keywords: New species, Ophryotrocha, early regeneration, transcriptome, annelid Posted Date: October 26th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-96086/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/23 Abstract Background In recent years, signicant progress has been made using powerful genetic approaches with newly developed models for understanding on regeneration, however, the molecular and cellular basis of early regeneration remains unclear. Annelids of the genus Ophryotrocha have long been subjects of research use as model species in ecological, toxicological, reproductive, and regenerative investigations. Although, Ophryotrocha spp., are amenable to molecular, cellular, and functional analyses, still in need to explore new model organisms in this genus to understand regeneration mechanisms. Here, we focus on a newly identied Ophryotrocha species for its early regeneration developmental mode. Results Based on detailed morphological (K-maxillae, rosette gland, and chromosome number) and molecular analyses, we present, O. xiamen as a new suitable model species to investigate the early regeneration mechanism. The comparative transcriptome analysis showed the gene expression patterns were related to transcriptional regulation, energy metabolism proles and structure and signal transduction during early stages of regeneration. Data also exhibited that genes such as neurotrypsin, Nos2, DMBT1, SCO spondin, and endotubin associated to regulate inammation, enterocyte differentiation, apoptosis, and neuroepithelial, were up-regulated during early regeneration stages (wound healing and blastema formation). -
A New Ophryotrocha Species (Polychaeta: Dorvilleidae) From
Journal of the Marine Biological Association of the United Kingdom, 2014, 94(1), 115–119. # Marine Biological Association of the United Kingdom, 2013 doi:10.1017/S0025315413001082 A new Ophryotrocha species (Polychaeta: Dorvilleidae) from circalittoral seabeds of the Cantabrian Sea (north-east Atlantic Ocean) jorge nu’ n~ez1, rodrigo riera2 and yolanda maggio1 1Benthos Laboratory, Department of Animal Biology, University of La Laguna, 38206 La Laguna, Tenerife, Canary Islands, Spain, 2Centro de Investigaciones Medioambientales del Atla´ntico (CIMA SL), Arzobispo Elı´as Yanes, 44, 38206 La Laguna, Tenerife, Canary Islands, Spain (Present address: Department of Biodiversity, Qatar Environment and Energy Research Institute (QEERI), 5825 Doha, Qatar) One new dorvilleid species belonging to the genus Ophryotrocha Clapare`de & Mecznikow, 1869 is described. The studied material was collected in circalittoral seabeds (70–100 m depth) in the Cantabrian Sea (north-east Atlantic Ocean). The new species Ophryotrocha cantabrica is characterized by having well-developed antennae and palps, parapodia with long dorsal cirrus, sub-triangular acicular lobes and inferior chaetal lobe well-developed, as well as the presence of P-type maxillae and bifid mandibles slightly tagged. The most closely related Ophryotrocha species are O. longidentata Josefson, 1975 and O. lobifera Oug, 1978; however, both species have biarticulated palps. Other differences with O. cantabrica sp. nov. are: body size and shape, parapodia morphology and number of setae, as well as the shape of mandibles and maxillae. Keywords: Polychaeta, Dorvilleidae, Ophryotrocha, circalittoral, Cantabrian Sea, Atlantic Ocean Submitted 12 April 2013; accepted 5 July 2013; first published online 6 August 2013 INTRODUCTION Paxton & A˚ kesson, 2007, 2010, 2011). -
Annelida) Systematics and Biodiversity
diversity Review The Current State of Eunicida (Annelida) Systematics and Biodiversity Joana Zanol 1, Luis F. Carrera-Parra 2, Tatiana Menchini Steiner 3, Antonia Cecilia Z. Amaral 3, Helena Wiklund 4 , Ascensão Ravara 5 and Nataliya Budaeva 6,* 1 Departamento de Invertebrados, Museu Nacional, Universidade Federal do Rio de Janeiro, Horto Botânico, Quinta da Boa Vista s/n, São Cristovão, Rio de Janeiro, RJ 20940-040, Brazil; [email protected] 2 Departamento de Sistemática y Ecología Acuática, El Colegio de la Frontera Sur, Chetumal, QR 77014, Mexico; [email protected] 3 Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas, SP 13083-862, Brazil; [email protected] (T.M.S.); [email protected] (A.C.Z.A.) 4 Department of Marine Sciences, University of Gothenburg, Carl Skottbergsgata 22B, 413 19 Gothenburg, Sweden; [email protected] 5 CESAM—Centre for Environmental and Marine Studies, Departamento de Biologia, Universidade de Aveiro, Campus de Santiago, 3810-193 Aveiro, Portugal; [email protected] 6 Department of Natural History, University Museum of Bergen, University of Bergen, Allégaten 41, 5007 Bergen, Norway * Correspondence: [email protected] Abstract: In this study, we analyze the current state of knowledge on extant Eunicida systematics, morphology, feeding, life history, habitat, ecology, distribution patterns, local diversity and exploita- tion. Eunicida is an order of Errantia annelids characterized by the presence of ventral mandibles and dorsal maxillae in a ventral muscularized pharynx. The origin of Eunicida dates back to the late Citation: Zanol, J.; Carrera-Parra, Cambrian, and the peaks of jaw morphology diversity and number of families are in the Ordovician. -
Whale-Fall Ecosystems: Recent Insights Into Ecology, Paleoecology, and Evolution
MA07CH24-Smith ARI 28 October 2014 12:32 Whale-Fall Ecosystems: Recent Insights into Ecology, Paleoecology, and Evolution Craig R. Smith,1 Adrian G. Glover,2 Tina Treude,3 Nicholas D. Higgs,4 and Diva J. Amon1 1Department of Oceanography, University of Hawaii, Honolulu, Hawaii 96822; email: [email protected], [email protected] 2Department of Life Sciences, Natural History Museum, SW7 5BD London, United Kingdom; email: [email protected] 3GEOMAR Helmholtz Centre for Ocean Research Kiel, 24148 Kiel, Germany; email: [email protected] 4Marine Institute, Plymouth University, PL4 8AA Plymouth, United Kingdom; email: [email protected] Annu. Rev. Mar. Sci. 2015. 7:571–96 Keywords First published online as a Review in Advance on ecological succession, chemosynthesis, speciation, vent/seep faunas, September 10, 2014 Osedax, sulfate reduction The Annual Review of Marine Science is online at marine.annualreviews.org Abstract This article’s doi: Whale falls produce remarkable organic- and sulfide-rich habitat islands at 10.1146/annurev-marine-010213-135144 Access provided by 168.105.82.76 on 01/12/15. For personal use only. the seafloor. The past decade has seen a dramatic increase in studies of mod- Copyright c 2015 by Annual Reviews. ern and fossil whale remains, yielding exciting new insights into whale-fall All rights reserved Annu. Rev. Marine. Sci. 2015.7:571-596. Downloaded from www.annualreviews.org ecosystems. Giant body sizes and especially high bone-lipid content allow great-whale carcasses to support a sequence of heterotrophic and chemosyn- thetic microbial assemblages in the energy-poor deep sea.