Page 1 of 13 Pleasersc Do Not Advances Adjust Margins

Total Page:16

File Type:pdf, Size:1020Kb

Page 1 of 13 Pleasersc Do Not Advances Adjust Margins RSC Advances This is an Accepted Manuscript, which has been through the Royal Society of Chemistry peer review process and has been accepted for publication. Accepted Manuscripts are published online shortly after acceptance, before technical editing, formatting and proof reading. Using this free service, authors can make their results available to the community, in citable form, before we publish the edited article. This Accepted Manuscript will be replaced by the edited, formatted and paginated article as soon as this is available. You can find more information about Accepted Manuscripts in the Information for Authors. Please note that technical editing may introduce minor changes to the text and/or graphics, which may alter content. The journal’s standard Terms & Conditions and the Ethical guidelines still apply. In no event shall the Royal Society of Chemistry be held responsible for any errors or omissions in this Accepted Manuscript or any consequences arising from the use of any information it contains. www.rsc.org/advances Page 1 of 13 PleaseRSC do not Advances adjust margins RSC Advances ARTICLE Changes to amino acid composition of bloodmeal after chemical oxidation Received 00th January 20xx, a a a b Accepted 00th January 20xx T. M. Hicks, C. J. R. Verbeek, M. C. Lay, and M. Manley-Harris DOI: 10.1039/x0xx00000x Bovine-derived bloodmeal can be decoloured using peracetic acid, extruded and injection moulded into a yellow translucent bioplastic. This plastic has different properties to extruded and injection moulded bloodmeal, in that it does www.rsc.org/ not require sodium sulfite or urea to be extrudable. The effect of oxidation on the physical and chemical characteristics of the proteins during bloodmeal decolouring with PAA was studied by assessing changes in the amino acid profile. Polymer interactions, hydrophilicity and the destruction of cysteine crosslinks were measured indirectly by assessing protein Manuscript solubility, molecular weight distribution and by synchrotron FT-IR analysis. Increasing peracetic acid concentration resulted in an increased loss of iron due to destruction of the porphyrin groups, increased solubility due to destruction or conversion of aromatic amino acids into hydrophilic groups, destruction of lysine, reduced protein content due to increased salt content in the final product, and a larger amount of smaller protein peptides but with a similar average molecular weight to bloodmeal. Amino acid analysis showed an increase in cysteine content in the product, FTIR of the sulfur groups revealed that these were heavily oxidised, such that some would be unable to participate in disulfide bonds thereby increasing protein solubility. performing a specific function in the overall decolouring and Introduction deodorising mechanisms.10 The presence of several reactive species and the formation of A semi-transparent bioplastic has been produced from free radicals, resulted in oxidative damage to the proteins as bloodmeal by decolouring it using commercial peracetic acid 11 1-3 the radicals underwent auto-reduction reactions. (PAA) followed by extrusion. Decolouring bloodmeal using 3 Consequently, treating proteins with oxidising agents leads to – 5 wt% PAA has been found to result in the lowering of the o o 2 undesired side effects, including modification of amino acid glass transition temperature from ~225 C to ~35 – 45 C and residues, protein hydrolysis or chain cleavage and protein also to require different processing aids for extrusion. In Accepted aggregation.7, 12 The type of damage and the extent of contrast to thermoplastic prepared from untreated bloodmeal, modification varied depending on the reduction potential and once decoloured, bloodmeal no longer required sodium sulfite 2 concentration of the oxidant, as well as the presence of other reduction of the cysteine crosslinks in order to be extruded. species which exhibited anti-oxidant or free radical scavenging Peracetic acid, which is an equilibrium mixture of peracetic properties. acid, hydrogen peroxide and acetic acid, has been used Bleaching wool with performic or peracetic acid selectively extensively since the early 1940s due to growing concerns over oxidised cystine (disulfide crosslinks), methionine and the environmental impact of chlorine. It is used as a bleaching 4-7 tryptophan side chains with minimal significant degradation of agent for textiles, as a disinfectant, as well as in wastewater the other amino-acids.13 However, a later study indicated that treatment. It does not form harmful disinfection by-products performic acid also degraded serine, threonine, tyrosine, and decomposes safely when discharged into the 8, 9 phenylalanine and histidine, while PAA oxidation resulted in environment. the conversion of all cystine to cysteic acid, with only small Common oxidants such as hydrogen peroxide are unable to losses of tyrosine, phenylalanine and histidine.14 Oxidation of degrade all of the haem present in bloodmeal due to the 3, 10 cystine bonds also occurs during hydrogen peroxide bleaching various oxidation states of haem-iron in haemoglobin. of human hair (keratin is highly crosslinked as a result of However, peracetic acid adequately removed the colour from disulfide bonds between cysteine residues). As a result, bloodmeal, with each component of the PAA solution Advances oxidation of hair and wool by hydrogen peroxide or peracetic acid led to a loss in tensile strength proportional to the 15-17 a. number of cystine residues degraded. Oxidation of bovine School of Engineering b. serum albumin and aldolase proteins with PAA was found to School of Science 18 Faculty of Science and Engineering, University of Waikato, Private Bag 3105, induce chain fragmentation. Hamilton 3240, New Zealand Oxidation of amino acids in proteins is dependent on oxidant † Footnotes relating to the title and/or authors should appear here. Electronic Supplementary Information (ESI) available: [details of any strength, concentration, pH and a range of other chemical supplementary information available should be included here]. See RSC This journal is © The Royal Society of Chemistry 20xx J. Name., 2013, 00, 1-3 | 1 Please do not adjust margins PleaseRSC do not Advances adjust margins Page 2 of 13 ARTICLE Journal Name conditions. The most recent investigation into the effect of This paper describes the effect of oxidation during bloodmeal PAA oxidation on dairy proteins, indicated that the amount of decolouring using PAA on the physical and chemical carbonyl groups increased while thiol (SH) groups decreased; characteristics of the proteins manifested by changes in the tryptophan and methionine were most vulnerable to oxidation amino acid profile. Polymer interactions and hydrophilicity while lysine was not affected.7 Neither peptide cleavage, nor were measured indirectly by assessing protein solubility and protein aggregation occurred to any significant extent.7 This is molecular weight distribution, while the destruction of probably as a result of the protective effect of short chain cysteine crosslinks was measured via synchrotron FT-IR carboxylic acids (or their salts) on proteins exposed to analysis. 23, 34-36 hydrogen peroxide, which has been attributed to their action as chelating agents (inhibiting Fenton-type reactions) or as scavengers of reactive oxygen species and free radicals;19, 20 Experimental both of the latter cause protein hydrolysis. This concurs with Materials peracetic acid decolouring of bloodmeal, in which the presence of acetic acid (or sulfuric acid) inhibited the reactivity Bovine bloodmeal was obtained from Wallace Corporation Ltd, of hydrogen peroxide.10 New Zealand and sieved to utilise particles under 710 µm. Helices, sheets, turns and coils which define the secondary Peracetic acid, an equilibrium mixture of peracetic acid, structure of the protein are modified by oxidation.21, 22 Amino hydrogen peroxide, acetic acid and water (Proxitane Sanitizer acids show a propensity to form particular types of secondary 5%) was purchased from Solvay Interox Pty Ltd Auckland, New structures, with most amino acids showing preference for only Zealand and diluted with distilled water to the appropriate Manuscript one type (Table 1),23 although, the periodicity and positioning concentration for decolouring (Table 2). Hydrogen peroxide of polar and non-polar residues in the amino acid sequence is (30 wt% EMSURE, ISO) was purchased from Merck, Auckland, known to have a greater influence on a peptide’s final New Zealand. Analytical grade glacial acetic acid, sodium secondary structure.24 Selective oxidation of certain amino hydroxide, sodium dodecyl sulfate, sodium chloride, acids may influence the formation of specific secondary monosodium phosphate and disodium phosphate were structures by changing the ability to form H bonds between purchased from ThermoFisher Scientific, Auckland, New C=O and NH groups. Zealand. The sensitivity of particular amino acid residues to oxidation by Bloodmeal Decolouring oxidants has been shown to vary between proteins and results from their position and interaction within the protein Bloodmeal was decoloured by adding 450 g of a 1 – 5 wt% structure.25 peracetic acid solution, or 26 wt% hydrogen peroxide (with or Oxidation of amino acids has been shown to cause increases in without 6.6 wt% acetic acid) to 150 g bloodmeal and reacting local flexibility or rigidity in the protein chain, leading to an the mixture under constant agitation for 10 min in a Kenwood 37 alteration in its secondary structure,21,
Recommended publications
  • Metabolic Engineering of Escherichia Coli for Poly(3-Hydroxybutyrate)
    Lin et al. Microb Cell Fact (2015) 14:185 DOI 10.1186/s12934-015-0369-3 RESEARCH Open Access Metabolic engineering of Escherichia coli for poly(3‑hydroxybutyrate) production via threonine bypass Zhenquan Lin1,2,3†, Yan Zhang1,2,3†, Qianqian Yuan1,2,3,4, Qiaojie Liu1,2,3, Yifan Li1,2,3, Zhiwen Wang1,2,3, Hongwu Ma4*, Tao Chen1,2,3,5* and Xueming Zhao1,2,3 Abstract Background: Poly(3-hydroxybutyrate) (PHB), have been considered to be good candidates for completely biode- gradable polymers due to their similar mechanical properties to petroleum-derived polymers and complete biodeg- radability. Escherichia coli has been used to simulate the distribution of metabolic fluxes in recombinant E. coli pro- ducing poly(3-hydroxybutyrate) (PHB). Genome-scale metabolic network analysis can reveal unexpected metabolic engineering strategies to improve the production of biochemicals and biofuels. Results: In this study, we reported the discovery of a new pathway called threonine bypass by flux balance analysis of the genome-scale metabolic model of E. coli. This pathway, mainly containing the reactions for threonine synthesis and degradation, can potentially increase the yield of PHB and other acetyl-CoA derived products by reutilizing the CO2 released at the pyruvate dehydrogenase step. To implement the threonine bypass for PHB production in E. coli, we deregulated the threonine and serine degradation pathway and enhanced the threonine synthesis, resulting in 2.23-fold improvement of PHB titer. Then, we overexpressed glyA to enhance the conversion of glycine to serine and activated transhydrogenase to generate NADPH required in the threonine bypass.
    [Show full text]
  • Effect of Peptide Histidine Isoleucine on Water and Electrolyte Transport in the Human Jejunum
    Gut: first published as 10.1136/gut.25.6.624 on 1 June 1984. Downloaded from Gut, 1984, 25, 624-628 Alimentary tract and pancreas Effect of peptide histidine isoleucine on water and electrolyte transport in the human jejunum K J MORIARTY, J E HEGARTY, K TATEMOTO, V MUTT, N D CHRISTOFIDES, S R BLOOM, AND J R WOOD From the Department of Gastroenterology, St Bartholomew's Hospital, London, The Liver Unit, King's College Hospital, London, Department ofMedicine, Hammersmith Hospital, London, and Department of Biochemistry, Karolinska Institute, Stockholm, Sweden SUMMARY Peptide histidine isoleucine, a 27 amino acid peptide with close amino acid sequence homology to vasoactive intestinal peptide and secretin, is distributed throughout the mammalian intestinal tract, where it has been localised to intramural neurones. An intestinal perfusion technique has been used to study the effect of intravenous peptide histidine isoleucine (44.5 pmol/kg/min) on water and electrolyte transport from a plasma like electrolyte solution in human jejunum in vivo. Peptide histidine isoleucine infusion produced peak plasma peptide histidine isoleucine concentrations in the range 2000-3000 pmolIl, flushing, tachycardia and a reduction in diastolic blood pressure. Peptide histidine isoleucine caused a significant inhibition of net absorption of water, sodium, potassium and bicarbonate and induced a net secretion of chloride, these changes being completely reversed during the post-peptide histidine isoleucine period. These findings suggest that endogenous peptide histidine isoleucine may participate in the neurohumoral regulation of water and electrolyte transport in the human jejunum. http://gut.bmj.com/ Peptide histidine isoleucine, isolated originally from INTESTINAL PERFUSION mammalian small intestine, is a 27-amino acid After an eight hour fast, each subject swallowed a peptide having close amino acid sequence homology double lumen intestinal perfusion tube, incorpo- to vasoactive intestinal peptide and secretin.
    [Show full text]
  • Isoleucine, an Essential Amino Acid, Prevents Liver Metastases of Colon Cancer by Antiangiogenesis Kazumoto Murata1 and Masami Moriyama2
    Research Article Isoleucine, an Essential Amino Acid, Prevents Liver Metastases of Colon Cancer by Antiangiogenesis Kazumoto Murata1 and Masami Moriyama2 1The First Department of Internal Medicine, Mie University School of Medicine, Tsu, Mie, Japan and 2Microbiology and Immunology, Keio University School of Medicine, Tokyo, Japan Abstract infection in the airways of cystic fibrosis (8), and susceptibility to salmonella infection in mouse intestinal tracts (9). In addition to In spite of recent advances in the treatment of colon cancer, h multiple liver metastases of colon cancer are still difficult to their direct antimicrobial activities, -defensins are strong treat. Some chemotherapeutic regimens have been reported to chemotactic factors for memory T cells and dendritic cells, be efficient, but there is a high risk of side effects associated suggesting that they also play an important role in acquired immunity (10–12). h-defensins are also inducible by inflammatory with these. Here, we show that isoleucine, an essential amino a h acid, prevents liver metastases in a mouse colon cancer cytokines, such as tumor necrosis factor- and interleukin-1 (13, 14). Recently, Fehlbaum et al. (15) reported that isoleucine metastatic model. Because isoleucine is a strong inducer of h B-defensin, we first hypothesized that it prevented liver and its analogues are highly specific inducers of -defensins. We thus originally hypothesized that isoleucine may contribute to metastases via the accumulation of dendritic cells or memory B tumor immunity through both innate and acquired immunity by T cells through up-regulation of -defensin. However, neither h B-defensin nor immunologic responses were induced by induction of -defensins.
    [Show full text]
  • Workshop 1 – Biochemistry (Chem 160)
    Workshop 1 – Biochemistry (Chem 160) 1. Draw the following peptide at pH = 7 and make sure to include the overall charge, label the N- and C-terminus, the peptide bond and the -carbon. AVDKY Give the overall charge of the peptide at pH = 3 and 12. 2. Draw a titration curve for Arg, make sure to label the different points. Determine the pI for Arg. 3. Nonpolar solute + water = solution a. What is the S of the universe, system and surroundings? The S of the universe would decrease this is why it is not spontaneous, the S of the system would increase but to a lesser extent to which the S of the surrounding would decrease S universe = S system + S surroundings 4. What is the hydrophobic effect and explain why it is thermodynamically favorable. The hydrophobic effect is when hydrophobic molecules tend to clump together burying them and placing hydrophilic molecules on the outside. The reason this is thermodynamically favorable is because it frees caged water molecules when burying clumping the hydrophobic molecules together. 5. Urea dissolves very readily in water, but the solution becomes very cold as the urea dissolves. How is this possible? Urea dissolves in water because when dissolving there is a net increase in entropy of the universe. The heat exchange, getting colder only reflects the enthalpy (H) component of the total energy change. The entropy change is high enough to offset the enthalpy component and to add up to an overall -G 6. A mutation that changes an alanine residue in the interior of a protein to valine is found to lead to a loss of activity.
    [Show full text]
  • The Optimum Isoleucine:Lysine Ratio in Starter Diets to Maximize Growth Performance of the Early-Weaned Pig
    Kansas Agricultural Experiment Station Research Reports Volume 0 Issue 10 Swine Day (1968-2014) Article 837 2000 The optimum isoleucine:lysine ratio in starter diets to maximize growth performance of the early-weaned pig B W. James Robert D. Goodband Michael D. Tokach See next page for additional authors Follow this and additional works at: https://newprairiepress.org/kaesrr Part of the Other Animal Sciences Commons Recommended Citation James, B W.; Goodband, Robert D.; Tokach, Michael D.; Nelssen, Jim L.; and DeRouchey, Joel M. (2000) "The optimum isoleucine:lysine ratio in starter diets to maximize growth performance of the early-weaned pig," Kansas Agricultural Experiment Station Research Reports: Vol. 0: Iss. 10. https://doi.org/10.4148/ 2378-5977.6677 This report is brought to you for free and open access by New Prairie Press. It has been accepted for inclusion in Kansas Agricultural Experiment Station Research Reports by an authorized administrator of New Prairie Press. Copyright 2000 Kansas State University Agricultural Experiment Station and Cooperative Extension Service. Contents of this publication may be freely reproduced for educational purposes. All other rights reserved. Brand names appearing in this publication are for product identification purposes only. No endorsement is intended, nor is criticism implied of similar products not mentioned. K-State Research and Extension is an equal opportunity provider and employer. The optimum isoleucine:lysine ratio in starter diets to maximize growth performance of the early-weaned pig Abstract A total of 360 weanling pigs (initially 12.3 lb BW and approximately 18 d of age) was used in a 14-d growth assay to determine the optimal isoleucine:lysine ratio to maximize growth performance.
    [Show full text]
  • Cysteine Dioxygenase 1 Is a Metabolic Liability for Non-Small Cell Lung Cancer Authors: Yun Pyo Kang1, Laura Torrente1, Min Liu2, John M
    bioRxiv preprint doi: https://doi.org/10.1101/459602; this version posted November 1, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Cysteine dioxygenase 1 is a metabolic liability for non-small cell lung cancer Authors: Yun Pyo Kang1, Laura Torrente1, Min Liu2, John M. Asara3,4, Christian C. Dibble5,6 and Gina M. DeNicola1,* Affiliations: 1 Department of Cancer Physiology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL, USA 2 Proteomics and Metabolomics Core Facility, Moffitt Cancer Center and Research Institute, Tampa, FL, USA 3 Division of Signal Transduction, Beth Israel Deaconess Medical Center, Boston, MA, USA 4 Department of Medicine, Harvard Medical School, Boston, MA, USA 5 Department of Pathology and Cancer Center, Beth Israel Deaconess Medical Center, Boston, MA, USA 6 Department of Pathology, Harvard Medical School, Boston, MA, USA *Correspondence to: [email protected]. Keywords: KEAP1, NRF2, cysteine, CDO1, sulfite Summary NRF2 is emerging as a major regulator of cellular metabolism. However, most studies have been performed in cancer cells, where co-occurring mutations and tumor selective pressures complicate the influence of NRF2 on metabolism. Here we use genetically engineered, non-transformed primary cells to isolate the most immediate effects of NRF2 on cellular metabolism. We find that NRF2 promotes the accumulation of intracellular cysteine and engages the cysteine homeostatic control mechanism mediated by cysteine dioxygenase 1 (CDO1), which catalyzes the irreversible metabolism of cysteine to cysteine sulfinic acid (CSA). Notably, CDO1 is preferentially silenced by promoter methylation in non-small cell lung cancers (NSCLC) harboring mutations in KEAP1, the negative regulator of NRF2.
    [Show full text]
  • 1 Abietic Acid R Abrasive Silica for Polishing DR Acenaphthene M (LC
    1 abietic acid R abrasive silica for polishing DR acenaphthene M (LC) acenaphthene quinone R acenaphthylene R acetal (see 1,1-diethoxyethane) acetaldehyde M (FC) acetaldehyde-d (CH3CDO) R acetaldehyde dimethyl acetal CH acetaldoxime R acetamide M (LC) acetamidinium chloride R acetamidoacrylic acid 2- NB acetamidobenzaldehyde p- R acetamidobenzenesulfonyl chloride 4- R acetamidodeoxythioglucopyranose triacetate 2- -2- -1- -β-D- 3,4,6- AB acetamidomethylthiazole 2- -4- PB acetanilide M (LC) acetazolamide R acetdimethylamide see dimethylacetamide, N,N- acethydrazide R acetic acid M (solv) acetic anhydride M (FC) acetmethylamide see methylacetamide, N- acetoacetamide R acetoacetanilide R acetoacetic acid, lithium salt R acetobromoglucose -α-D- NB acetohydroxamic acid R acetoin R acetol (hydroxyacetone) R acetonaphthalide (α)R acetone M (solv) acetone ,A.R. M (solv) acetone-d6 RM acetone cyanohydrin R acetonedicarboxylic acid ,dimethyl ester R acetonedicarboxylic acid -1,3- R acetone dimethyl acetal see dimethoxypropane 2,2- acetonitrile M (solv) acetonitrile-d3 RM acetonylacetone see hexanedione 2,5- acetonylbenzylhydroxycoumarin (3-(α- -4- R acetophenone M (LC) acetophenone oxime R acetophenone trimethylsilyl enol ether see phenyltrimethylsilyl... acetoxyacetone (oxopropyl acetate 2-) R acetoxybenzoic acid 4- DS acetoxynaphthoic acid 6- -2- R 2 acetylacetaldehyde dimethylacetal R acetylacetone (pentanedione -2,4-) M (C) acetylbenzonitrile p- R acetylbiphenyl 4- see phenylacetophenone, p- acetyl bromide M (FC) acetylbromothiophene 2- -5-
    [Show full text]
  • Amino Acid Chemistry
    Handout 4 Amino Acid and Protein Chemistry ANSC 619 PHYSIOLOGICAL CHEMISTRY OF LIVESTOCK SPECIES Amino Acid Chemistry I. Chemistry of amino acids A. General amino acid structure + HN3- 1. All amino acids are carboxylic acids, i.e., they have a –COOH group at the #1 carbon. 2. All amino acids contain an amino group at the #2 carbon (may amino acids have a second amino group). 3. All amino acids are zwitterions – they contain both positive and negative charges at physiological pH. II. Essential and nonessential amino acids A. Nonessential amino acids: can make the carbon skeleton 1. From glycolysis. 2. From the TCA cycle. B. Nonessential if it can be made from an essential amino acid. 1. Amino acid "sparing". 2. May still be essential under some conditions. C. Essential amino acids 1. Branched chain amino acids (isoleucine, leucine and valine) 2. Lysine 3. Methionine 4. Phenyalanine 5. Threonine 6. Tryptophan 1 Handout 4 Amino Acid and Protein Chemistry D. Essential during rapid growth or for optimal health 1. Arginine 2. Histidine E. Nonessential amino acids 1. Alanine (from pyruvate) 2. Aspartate, asparagine (from oxaloacetate) 3. Cysteine (from serine and methionine) 4. Glutamate, glutamine (from α-ketoglutarate) 5. Glycine (from serine) 6. Proline (from glutamate) 7. Serine (from 3-phosphoglycerate) 8. Tyrosine (from phenylalanine) E. Nonessential and not required for protein synthesis 1. Hydroxyproline (made postranslationally from proline) 2. Hydroxylysine (made postranslationally from lysine) III. Acidic, basic, polar, and hydrophobic amino acids A. Acidic amino acids: amino acids that can donate a hydrogen ion (proton) and thereby decrease pH in an aqueous solution 1.
    [Show full text]
  • The Role of Some of the Krebs Cycle Reactions in the Biosynthetic Functions of Thiobacillus Thioparus
    AN ABSTRACT OF THE THESIS OF Gerald G. Still for the PhD in Chemistry (Name) (Degree) (Major) Date thesis is presented May 14, 1965 Title THE ROLE OF SOME OF THE KREBS CYCLE REACTIONS IN THE BIOSYNTHETIC FUNCTIONS OF THIOBACILLUS THIOPARUS Abstract approved Redacted for Privacy (Major professor) Aseptic radiorespirometry has been used to examine the utilization of external carbon sources by proliferat- ing Thiobacillus thioparus cells. These studies reveal that glucose, galactose, mannose, fructose, ribose, DL- glutamate, and L- aspartate were not utilized by this chemoautotrophic organism. However, it has been shown that trace amounts of acetate, glycine, DL- serine, DL- alanine, succinate and fumarate can be utilized by T. thioparus cells. To elucidate the nature of the biosynthetic pathways operative in this bacteria, proliferating cell cultures were allowed to metabolize specifically 14C labeled substrates. The resulting 14C labeled cells were sub- sequently hydrolyzed, their amino acids isolated and subjected to degradation experiments. Examination of the respective fates of the label in DL- alanine- 2 -14C, acetate- 1 -14C, or acetate -2 -14C in the cellular metabolism revealed that the Krebs Cycle path- way is not functioning as a respiratory mechanism in T. thioparus. However, most of the reactions of the Krebs Cycle pathway are involved in the biosynthesis of carbon skeletons for various amino acids. A CO2 fixa- tion pathway of the C3 +C1 type is instrumental in provid- ing C4 dicarboxylic acids and those amino acids derived therefrom. Acetate can be incorporated into a -keto- glutarate and those amino acids derived therefrom, but cannot be incorporated into the C4 dicarboxylic acids.
    [Show full text]
  • Biomoleculesbiomolecules
    1414Unit Objectives BiomoleculesBiomolecules After studying this Unit, you will be able to • explain the characteristics of “It is the harmonious and synchronous progress of chemical biomolecules like carbohydrates, reactions in body which leads to life”. proteins and nucleic acids and hormones; • classify carbohydrates, proteins, A living system grows, sustains and reproduces itself. nucleic acids and vitamins on the The most amazing thing about a living system is that it basis of their structures; is composed of non-living atoms and molecules. The • explain the difference between pursuit of knowledge of what goes on chemically within DNA and RNA; a living system falls in the domain of biochemistry. Living • describe the role of biomolecules systems are made up of various complex biomolecules in biosystem. like carbohydrates, proteins, nucleic acids, lipids, etc. Proteins and carbohydrates are essential constituents of our food. These biomolecules interact with each other and constitute the molecular logic of life processes. In addition, some simple molecules like vitamins and mineral salts also play an important role in the functions of organisms. Structures and functions of some of these biomolecules are discussed in this Unit. 14.114.114.1 Carbohydrates Carbohydrates are primarily produced by plants and form a very large group of naturally occurring organic compounds. Some common examples of carbohydrates are cane sugar, glucose, starch, etc. Most of them have a general formula, Cx(H2O)y, and were considered as hydrates of carbon from where the name carbohydrate was derived. For example, the molecular formula of glucose (C6H12O6) fits into this general formula, C6(H2O)6. But all the compounds which fit into this formula may not be classified as carbohydrates.
    [Show full text]
  • Mechanistic Study of Cysteine Dioxygenase, a Non-Heme
    MECHANISTIC STUDY OF CYSTEINE DIOXYGENASE, A NON-HEME MONONUCLEAR IRON ENZYME by WEI LI Presented to the Faculty of the Graduate School of The University of Texas at Arlington in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY THE UNIVERSITY OF TEXAS AT ARLINGTON August 2014 Copyright © by Student Name Wei Li All Rights Reserved Acknowledgements I would like to thank Dr. Pierce for your mentoring, guidance and patience over the five years. I cannot go all the way through this without your help. Your intelligence and determination has been and will always be an example for me. I would like to thank my committee members Dr. Dias, Dr. Heo and Dr. Jonhson- Winters for the directions and invaluable advice. I also would like to thank all my lab mates, Josh, Bishnu ,Andra, Priyanka, Eleanor, you all helped me so I could finish my projects. I would like to thank the Department of Chemistry and Biochemistry for the help with my academic and career. At Last, I would like to thank my lovely wife and beautiful daughter who made my life meaningful and full of joy. July 11, 2014 iii Abstract MECHANISTIC STUDY OF CYSTEINE DIOXYGENASE A NON-HEME MONONUCLEAR IRON ENZYME Wei Li, PhD The University of Texas at Arlington, 2014 Supervising Professor: Brad Pierce Cysteine dioxygenase (CDO) is an non-heme mononuclear iron enzymes that catalyzes the O2-dependent oxidation of L-cysteine (Cys) to produce cysteine sulfinic acid (CSA). CDO controls cysteine levels in cells and is a potential drug target for some diseases such as Parkinson’s and Alzhermer’s.
    [Show full text]
  • Importance of Acidic, Proline/Serine/Threonine-Rich, And
    Proc. Natl. Acad. Sci. USA Vol. 94, pp. 2501–2506, March 1997 Immunology Importance of acidic, prolineyserineythreonine-rich, and GTP- binding regions in the major histocompatibility complex class II transactivator: Generation of transdominant- negative mutants KEH-CHUANG CHIN*†,GEORGE G.-X. LI†‡, AND JENNY P.-Y. TING†‡ *Department of Biochemistry and Biophysics, †Lineberger Comprehensive Cancer Center, and ‡Department of Microbiology–Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599-7295 Communicated by George Stark, Cleveland Clinic Foundation, Cleveland, OH, December 31, 1996 (received for review September 3, 1996) ABSTRACT The class II transactivator (CIITA) is a (11). CIITA was cloned by its ability to complement RJ2.2.5, master transcription regulator of gene products involved in an in vitro-generated MHC class II negative cell derived from the exogenous antigen presentation pathway, including major Raji (11, 18). Several groups, including our own, have shown histocompatibility complex (MHC) class II, invariant chain, that CIITA is induced by IFN-g and that transfection of CIITA and DM. An extensive analysis of the putative functional alone into cells is sufficient to activate MHC class II (19–21), domains of CIITA is undertaken here to explore the action of invariant chain (19, 22), and HLA-DM genes (22). CIITA. Antibodies to CIITA protein were produced to verify A major issue in the field concerns the mode of action of that these mutant proteins are expressed. Both acidic and CIITA. Although CIITA is a strong transactivator, it does not prolineyserineythreonine-rich domains are essential for class bind MHC class II promoter elements, nor does it appear to II MHC promoter activation.
    [Show full text]