Risk Assessment of Vibrio Parahaemolyticus in Seafood
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BACTERIAL and PHAGE INTERACTIONS INFLUENCING Vibrio Parahaemolyticus ECOLOGY
University of New Hampshire University of New Hampshire Scholars' Repository Master's Theses and Capstones Student Scholarship Spring 2016 BACTERIAL AND PHAGE INTERACTIONS INFLUENCING Vibrio parahaemolyticus ECOLOGY Ashley L. Marcinkiewicz University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/thesis Recommended Citation Marcinkiewicz, Ashley L., "BACTERIAL AND PHAGE INTERACTIONS INFLUENCING Vibrio parahaemolyticus ECOLOGY" (2016). Master's Theses and Capstones. 852. https://scholars.unh.edu/thesis/852 This Thesis is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Master's Theses and Capstones by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. BACTERIAL AND PHAGE INTERACTIONS INFLUENCING Vibrio parahaemolyticus ECOLOGY BY ASHLEY MARCINKIEWICZ Bachelor of Arts, Wells College, 2011 THESIS Submitted to the University of New Hampshire In Partial Fulfillment of The Requirements for the Degree of Master of Science in Microbiology May, 2016 This thesis has been examined and approved in partial fulfillment of the requirements for the degree of Masters of Science in Microbiology by: Thesis Director, Cheryl A. Whistler Associate Professor of Molecular, Cellular, and Biomedical Sciences Stephen H. Jones Research Associate Professor of Natural Resources and the Environment Jeffrey T. Foster Assistant Professor of Molecular, Cellular, and Biomedical Sciences On April 15th, 2016 Original approved signatures are on file with the University of New Hampshire Graduate School. iii TABLE OF CONTENTS ACKNOWLEDGEMENTS………………………………………………………... vi LIST OF TABLES………………………………………………………………… vii LIST OF FIGURES…….………………………………………………………….. viii ABSTRACT………………………………………………………………………. -
(Crisprs) in Pandemic and Non-Pandemic Vibrio Parahaemolyticus Isolates from Seafood Sources
microorganisms Article Characterization and Analysis of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) in Pandemic and Non-Pandemic Vibrio parahaemolyticus Isolates from Seafood Sources Nawaporn Jingjit 1, Sutima Preeprem 2, Komwit Surachat 3,4 and Pimonsri Mittraparp-arthorn 1,4,* 1 Division of Biological Science, Faculty of Science, Prince of Songkla University, Hat Yai 90110, Songkla, Thailand; [email protected] 2 Microbiology Program, Faculty of Science Technology and Agriculture, Yala Rajabhat University, Muang District, Yala 95000, Yala, Thailand; [email protected] 3 Division of Computational Science, Faculty of Science, Prince of Songkla University, Hat Yai 90110, Songkhla, Thailand; [email protected] 4 Molecular Evolution and Computational Biology Research Unit, Faculty of Science, Prince of Songkla University, Hat Yai 90110, Songkhla, Thailand * Correspondence: [email protected]; Tel.: +66-74-288-314 Abstract: Vibrio parahaemolyticus is one of the significant seafood-borne pathogens causing gastroen- teritis in humans. Clustered regularly interspaced short palindromic repeats (CRISPR) are commonly Citation: Jingjit, N.; Preeprem, S.; Surachat, K.; Mittraparp-arthorn, P. detected in the genomes of V. parahaemolyticus and the polymorphism of CRISPR patterns has been Characterization and Analysis of applied as a genetic marker for tracking its evolution. In this work, a total of 15 pandemic and Clustered Regularly Interspaced 36 non-pandemic V. parahaemolyticus isolates obtained from seafood between 2000 and 2012 were Short Palindromic Repeats (CRISPRs) characterized based on hemolytic activity, antimicrobial susceptibility, and CRISPR elements. The in Pandemic and Non-Pandemic results showed that 15/17 of the V. parahaemolyticus seafood isolates carrying the thermostable direct Vibrio parahaemolyticus Isolates from hemolysin gene (tdh+) were Kanagawa phenomenon (KP) positive. -
Whole-Body Microbiota of Sea Cucumber
J. Microbiol. Biotechnol. (2017), 27(10), 1753–1762 https://doi.org/10.4014/jmb.1707.07067 Research Article Review jmb Whole-Body Microbiota of Sea Cucumber (Apostichopus japonicus) from South Korea for Improved Seafood Management S Tae-Yoon Kim1,3, Jin-Jae Lee1,3, Bong-Soo Kim1,3*, and Sang Ho Choi2,3* 1Department of Life Science, Multidisciplinary Genome Institute, Hallym University, Chuncheon 24252, Republic of Korea 2Department of Agricultural Biotechnology, Center for Food Safety and Toxicology, Seoul National University, Seoul 08826, Republic of Korea 3Food-borne Pathogen Omics Research Center (FORC), Seoul National University, Seoul 08826, Republic of Korea Received: July 27, 2017 Revised: August 24, 2017 Sea cucumber (Apostichopus japonicus) is a popular seafood source in Asia, including South Accepted: August 28, 2017 Korea, and its consumption has recently increased with recognition of its medicinal First published online properties. However, because raw sea cucumber contains various microbes, its ingestion can August 31, 2017 cause foodborne illness. Therefore, analysis of the microbiota in the whole body of sea *Corresponding authors cucumber can extend our understanding of foodborne illness caused by microorganisms and B.S.K. help to better manage products. We collected 40 sea cucumbers from four different sites in Phone: +82-33-248-2093; Fax: +82-33-256-3420; August and November, which are known as the maximum production areas in Korea. The E-mail: [email protected] microbiota was analyzed by an Illumina MiSeq system, and bacterial amounts were quantified S.H.C. by real-time PCR. The diversity and bacterial amounts in sea cucumber were higher in August Phone: +82-2-880-4857; Fax: +82-2-873-5095; than in November. -
Enterovibrio, Grimontia (Grimontia Hollisae, Formerly Vibrio Hollisae), Listonella, Photobacterium (Photobacterium Damselae
VIBRIOSIS (Non-Cholera Vibrio spp) Genera in the family Vibrionaceae currently include: Aliivibrio, Allomonas, Catenococcus, Enterovibrio, Grimontia (Grimontia hollisae, formerly Vibrio hollisae), Listonella, Photobacterium (Photobacterium damselae, formerly Vibrio damselae), Salinivibrio, and Vibrio species including V. cholerae non-O1/non-O139, V. parahaemolyticus, V. vulnificus, V. fluvialis, V. furnissii, and V. mimicus alginolyticus and V. metschnikovi. (Not all of these have been recognized to cause human illness.) REPORTING INFORMATION • Class B2: Report by the end of the business week in which the case or suspected case presents and/or a positive laboratory result to the local public health department where the patient resides. If patient residence is unknown, report to the local public health department in which the reporting health care provider or laboratory is located. • Reporting Form(s) and/or Mechanism: Ohio Confidential Reportable Disease form (HEA 3334, rev. 1/09), Positive Laboratory Findings for Reportable Disease form (HEA 3333, rev. 8/05), the local health department via the Ohio Disease Reporting System (ODRS) or telephone. • The Centers for Disease Control and Prevention (CDC) requests that states collect information on the Cholera and Other Vibrio Illness Surveillance Report (52.79 E revised 08/2007) (COVIS), available at http://www.cdc.gov/nationalsurveillance/PDFs/CDC5279_COVISvibriosis.pdf. Reporting sites should use the COVIS reporting form to assist in local disease investigation and traceback activities. Information collected from the form should be entered into ODRS and sent to the Ohio Department of Health (ODH). • Additional reporting information, with specifics regarding the key fields for ODRS Reporting can be located in Section 7. AGENTS Vibrio parahaemolyticus; Vibrio cholerae non-O1 (does not agglutinate in O group-1 sera), strains other than O139; Vibrio vulnificus and Photobacterium damselae (formerly Vibrio damselae) and Grimontia hollisae (formerly Vibrio hollisae), V. -
Protecting the Safety and Quality of Live Oysters Through the Integration of Predictive Microbiology in Cold Supply Chains
Protecting the Safety and Quality of Live Oysters through the Integration of Predictive Microbiology in Cold Supply Chains by Judith Fernandez-Piquer MSc Food Safety, Wageningen University, 2007 BSc Food Science and Technology, University of Barcelona, 2006 BSc Technical Industrial Engineering, Polytechnic University of Catalonia, 2003 A thesis submitted to the School of Agricultural Science, University of Tasmania in fulfilment of the requirements for the degree of Doctor of Philosophy November, 2011 Declaration of originality and authority of access Declaration of originality and authority of access Declaration of Originality I, Judith Fernandez-Piquer, certify that this thesis does not contain any material which has been accepted for a degree or diploma by the University of Tasmania or any other institution, except by way of background information and duly acknowledged in the thesis. To the best of my knowledge and belief, this thesis does not contain material previously published or written by another person except where due reference is made in the text of the thesis and nor does this thesis contain any material that infringes copyright. _____________________________ Judith Fernandez-Piquer, 30 November 2011 Authority of access This thesis may be made available for loan and limited copying in accordance with the Copyright Act 1968. _____________________________ Judith Fernandez-Piquer, 30 November 2011 - 3 - Acknowledgements Acknowledgements This research has been possible with the collaboration of amazing people I have met along the way. After three and a half years of oyster adventures, I am glad to have the opportunity to express my gratitude to all of you. I would like to offer my sincere gratitude to my supervisor, Mark Tamplin, for all the experience and knowledge you have shared with me. -
Proquest Dissertations
STANDARDIZING THE TASTE OF TRADITION: MARYLAND CRAB CAKES FROM THAILAND By Kelly Feltault Submitted to the Faculty of the College of Arts and Sciences of American University in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy In Anthropology Chair: __{3--"-!Uft__::_-=--~-·--· _:.__:___ __ _ Dr. Brett Williams w~ ~a> Dr. · Broad 2009 American University Washington, D.C. 20016 AMERICAN UNIVERSin' LIBRARY l\'4 2,5 UMI Number: 3357495 Copyright 2009 by Feltault, Kelly All rights reserved. INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed-through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. ® UMI UMI Microform 3357495 Copyright 2009 by ProQuest LLC. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. ProQuest LLC 789 E. Eisenhower Parkway PO Box 1346 Ann Arbor, MI 481 06-1346 ©COPYRIGHT by Kelly F eltault 2009 ALL RIGHTS RESERVED DEDICATION To my husband, who only eats crab claws. STANDARDIZING THE TASTE OF TRADITION: MARYLAND CRAB CAKES FROM THAILAND BY Kelly Feltault ABSTRACT Blue crabs are the main ingredient in Maryland crab cakes, a regional food symbolizing the Chesapeake and Maryland's state identity. As the taste of Maryland, crab cakes invoke authenticity through the Bay's maritime culture and rural coastal communities. -
Microbial Community and Vibrio Parahaemolyticus Population Dynamics in Relayed Oysters
University of New Hampshire University of New Hampshire Scholars' Repository Doctoral Dissertations Student Scholarship Fall 2017 MICROBIAL COMMUNITY AND VIBRIO PARAHAEMOLYTICUS POPULATION DYNAMICS IN RELAYED OYSTERS Michael Anthony Taylor University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/dissertation Recommended Citation Taylor, Michael Anthony, "MICROBIAL COMMUNITY AND VIBRIO PARAHAEMOLYTICUS POPULATION DYNAMICS IN RELAYED OYSTERS" (2017). Doctoral Dissertations. 2288. https://scholars.unh.edu/dissertation/2288 This Dissertation is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. MICROBIAL COMMUNITY AND VIBRIO PARAHAEMOLYTICUS POPULATION DYNAMICS IN RELAYED OYSTERS BY MICHAEL ANTHONY TAYLOR BS, University of New Hampshire, 2002 Master’s Degree, University of New Hampshire, 2005 DISSERTATION Submitted to the University of New Hampshire in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Microbiology September, 2017 This dissertation has been examined and approved in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Microbiology by: Dissertation Director, Stephen H. Jones Research Associate Professor, Natural Resources and the Environment Cheryl A. Whistler, Associate Professor, Molecular, Cellular & Biomedical Sciences Vaughn S. Cooper, Associate Professor, Microbiology & Molecular Genetics, University of Pittsburg School of Medicine Kirk Broders, Assistant Professor, Plant Pathology, Colorado State University College of Agricultural Sciences Thomas Howell, President / Owner, Spinney Creek Shellfish, Inc., Eliot, Maine On March 24, 2017 Original approval signatures are on file with the University of New Hampshire Graduate School. -
Pathogenic Vibrio Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes
RESEARCH ARTICLE Pathogenic Vibrio Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes Rachel E. Diner,a,b,c Drishti Kaul,c Ariel Rabines,a,c Hong Zheng,c Joshua A. Steele,d John F. Griffith,d Andrew E. Allena,c aScripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA bDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA cMicrobial and Environmental Genomics Group, J. Craig Venter Institute, La Jolla, California, USA dSouthern California Coastal Water Research Project, Costa Mesa, California, USA ABSTRACT Interactions between vibrio bacteria and the planktonic community impact marine ecology and human health. Many coastal Vibrio spp. can infect humans, represent- ing a growing threat linked to increasing seawater temperatures. Interactions with eukaryo- tic organisms may provide attachment substrate and critical nutrients that facilitate the per- sistence, diversification, and spread of pathogenic Vibrio spp. However, vibrio interactions with planktonic organisms in an environmental context are poorly understood. We quanti- fied the pathogenic Vibrio species V. cholerae, V. parahaemolyticus,andV. vulnificus monthly for 1 year at five sites and observed high abundances, particularly during summer months, with species-specific temperature and salinity distributions. Using metabarcoding, we estab- lished a detailed profile of both prokaryotic and eukaryotic coastal microbial communities. We found that pathogenic Vibrio species were frequently associated with distinct eukaryo- tic amplicon sequence variants (ASVs), including diatoms and copepods. Shared environ- mental conditions, such as high temperatures and low salinities, were associated with both high concentrations of pathogenic vibrios and potential environmental reservoirs, which may influence vibrio infection risks linked to climate change and should be incorporated into predictive ecological models and experimental laboratory systems. -
Vibrios Illness (Vibriosis)
Vibrios Illness (Vibriosis) What is vibriosis? Vibrios illness is caused by bacteria found naturally in seawater environments, like bay or gulf waters. Vibrio infections occur with exposure to seawater or consumption of raw or undercooked contaminated seafood. Vibriosis includes 2 different types of infections: Vibrio parahaemolyticus (V. parahaemolyticus) and Vibrio vulnificus (V. vulnificus). All vibriosis infections must be reported to the Alabama Department of Public Health. What are the symptoms of vibriosis? General vibrios illness symptoms may include diarrhea, vomiting, abdominal pain, chills, fever, shock, skin lesions, and wound infections. V. parahaemolyticus typically causes non‐bloody diarrhea. V. vulnificus can cause in people who are immunocompromised, for example liver disease or cancer, to be at higher risk for serious complications. For high‐risk people, V. vulnificus typically infects the bloodstream, causing a life‐threatening illness. How does vibriosis spread? V. parahaemolyticus and V. vulnificus generally are not passed person-to-person. Vibriosis infections occur when people eat raw or undercooked shellfish, particularly oysters. Less commonly, vibriosis can cause an infection in the skin when an open wound is exposed to warm seawater. How do I stop the spread of Vibriosis? Most V. parahaemolyticus and V. vulnificus in the United States can be prevented by: o Thoroughly cooking seafood, especially oysters. o Avoiding exposure of open wounds to warm seawater. o Closing oyster beds when an outbreak is traced to an oyster bed by health officials recommend, until vibrios levels are lower. What should I do if I suspect I have vibriosis? Contact your healthcare provider to determine if you have contracted vibriosis. -
Fisheries and Aquaculture Economics
OLA FLAATEN FISHERIES AND AQUACULTURE ECONOMICS Download free eBooks at bookboon.com 2 Fisheries and Aquaculture Economics 2nd edition © 2018 Ola Flaaten & bookboon.com ISBN 978-87-403-2281-1 Peer review by Dr. Harald Bergland, Associate professor, School of Business and Economics, Campus Harstad, UiT The Arctic University of Norway Download free eBooks at bookboon.com 3 FISHERIES AND AQUACULTURE ECONOMICS CONTENTS CONTENTS Preface 11 Acknowledgements 12 Part I Introduction 13 1 Introduction 14 Part II Fisheries 22 2 Population dynamics and fishing 23 2.1 Growth of fish stocks 23 2.2 Effort and production 26 2.3 Yield and stock effects of fishing 29 Free eBook on Learning & Development By the Chief Learning Officer of McKinsey Download Now Download free eBooks at bookboon.com Click on the ad to read more 4 FISHERIES AND AQUACULTURE ECONOMICS CONTENTS 3 A basic bioeconomic model 36 3.1 Open access bioeconomic equilibrium 36 3.2 Maximising resource rent 42 3.3 Effort and harvest taxes 46 3.4 Fishing licences and quotas 52 4 Investment analysis 60 4.1 Discounting 60 4.2 Fish stocks as capital 63 4.3 Long-run optimal stock levels 67 4.4 Transition to long-run optimum 74 4.5 Adjusted transition paths 77 5 The Gordon-Schaefer model 83 5.1 The logistic growth model 83 5.2 The open-access fishery 85 5.3 Economic optimal harvesting 88 5.4 Discounting effects 92 6 Fishing vessel economics 98 6.1 Optimal vessel effort 98 6.2 Vessel behaviour in the long run 104 6.3 Quota price and optimal effort 105 6.4 A small-scale fisher’s choice of leisure time -
Vibrio Parahaemolyticus Interactions with Chitin in Response to Environmental Factors
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2013 Vibrio Parahaemolyticus Interactions With Chitin In Response To Environmental Factors Vanessa Molina Louisiana State University and Agricultural and Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Oceanography and Atmospheric Sciences and Meteorology Commons Recommended Citation Molina, Vanessa, "Vibrio Parahaemolyticus Interactions With Chitin In Response To Environmental Factors" (2013). LSU Doctoral Dissertations. 2992. https://digitalcommons.lsu.edu/gradschool_dissertations/2992 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. VIBRIO PARAHAEMOLYTICUS INTERACTIONS WITH CHITIN IN RESPONSE TO ENVIRONMENTAL FACTORS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Oceanography and Coastal Sciences by Vanessa Molina B.S., Texas A&M University at Galveston, 2004 M.S., McNeese State University, 2007 August 2014 To my friends and family who believed in me and stood behind me every step of the way. And to Mango for always believing that every day can be the best day ever. ii ACKNOWLEDGMENTS This work was supported by NSF grant EF-0813285/EF-0813066 as part of the joint NSF-NIH Ecology of Infectious Diseases program and by Louisiana Sea Grant #R/OVV-02. I would to like to thank Dr. -
Something Is Happening to Our Fish Stocks
The oceans and us 1 The oceans and us Since man first gazed across its watery depths, the sea has been held in special regard. It has evoked visions of splendour and horror. It has provided life-sustaining riches and taken the lives of many in return. The sea is and continues to be a mystery, a symbolic representation of the forces of good and evil; of things that are beautiful and those that are beastly; of that which is human and that which is inspirational. The History of Seafood Of all the things that the oceans provide, perhaps the most important resource for us is the rich array of seafood which we harvest from its depths and shorelines across the world. More importantly, for those of us involved in the seafood industry, from the fishers who catch the fish, to the restaurant or deli owner that sells it, this seafood represents more than just a source of food; it is part of our culture, our heritage and our livelihood. Seafood may mean different things to different people. We may not know it but we all depend on the oceans To some, it is the height of luxury; an oyster still fresh in one way or another. from the sea shared over a glass of champagne. To others, it may be the daily meal, the fish brought home /ƚ ĐŽŶƚƌŽůƐ ŽƵƌ ĐůŝŵĂƚĞ͖ ǁŝƚŚŽƵƚ ƚŚĞ ŽĐĞĂŶ͛Ɛ after a long time at sea or some mussels gathered at low moderating effects on the weather, our days would be tide along the rocky shore.