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Benthic Invertebrate Community Monitoring and Indicator Development for Barnegat Bay-Little Egg Harbor Estuary
July 15, 2013 Final Report Project SR12-002: Benthic Invertebrate Community Monitoring and Indicator Development for Barnegat Bay-Little Egg Harbor Estuary Gary L. Taghon, Rutgers University, Project Manager [email protected] Judith P. Grassle, Rutgers University, Co-Manager [email protected] Charlotte M. Fuller, Rutgers University, Co-Manager [email protected] Rosemarie F. Petrecca, Rutgers University, Co-Manager and Quality Assurance Officer [email protected] Patricia Ramey, Senckenberg Research Institute and Natural History Museum, Frankfurt Germany, Co-Manager [email protected] Thomas Belton, NJDEP Project Manager and NJDEP Research Coordinator [email protected] Marc Ferko, NJDEP Quality Assurance Officer [email protected] Bob Schuster, NJDEP Bureau of Marine Water Monitoring [email protected] Introduction The Barnegat Bay ecosystem is potentially under stress from human impacts, which have increased over the past several decades. Benthic macroinvertebrates are commonly included in studies to monitor the effects of human and natural stresses on marine and estuarine ecosystems. There are several reasons for this. Macroinvertebrates (here defined as animals retained on a 0.5-mm mesh sieve) are abundant in most coastal and estuarine sediments, typically on the order of 103 to 104 per meter squared. Benthic communities are typically composed of many taxa from different phyla, and quantitative measures of community diversity (e.g., Rosenberg et al. 2004) and the relative abundance of animals with different feeding behaviors (e.g., Weisberg et al. 1997, Pelletier et al. 2010), can be used to evaluate ecosystem health. Because most benthic invertebrates are sedentary as adults, they function as integrators, over periods of months to years, of the properties of their environment. -
New Zealand's Genetic Diversity
1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses). -
Shell Classification – Using Family Plates
Shell Classification USING FAMILY PLATES YEAR SEVEN STUDENTS Introduction In the following activity you and your class can use the same techniques as Queensland Museum The Queensland Museum Network has about scientists to classify organisms. 2.5 million biological specimens, and these items form the Biodiversity collections. Most specimens are from Activity: Identifying Queensland shells by family. Queensland’s terrestrial and marine provinces, but These 20 plates show common Queensland shells some are from adjacent Indo-Pacific regions. A smaller from 38 different families, and can be used for a range number of exotic species have also been acquired for of activities both in and outside the classroom. comparative purposes. The collection steadily grows Possible uses of this resource include: as our inventory of the region’s natural resources becomes more comprehensive. • students finding shells and identifying what family they belong to This collection helps scientists: • students determining what features shells in each • identify and name species family share • understand biodiversity in Australia and around • students comparing families to see how they differ. the world All shells shown on the following plates are from the • study evolution, connectivity and dispersal Queensland Museum Biodiversity Collection. throughout the Indo-Pacific • keep track of invasive and exotic species. Many of the scientists who work at the Museum specialise in taxonomy, the science of describing and naming species. In fact, Queensland Museum scientists -
AMS112 1978-1979 Lowres Web
--~--------~--------------------------------------------~~~~----------~-------------- - ~------------------------------ COVER: Paul Webber, technical officer in the Herpetology department searchers for reptiles and amphibians on a field trip for the Colo River Survey. Photo: John Fields!The Australian Museum. REPORT of THE AUSTRALIAN MUSEUM TRUST for the YEAR ENDED 30 JUNE , 1979 ST GOVERNMENT PRINTER, NEW SOUTH WALES-1980 D. WE ' G 70708K-1 CONTENTS Page Page Acknowledgements 4 Department of Palaeontology 36 The Australian Museum Trust 5 Department of Terrestrial Invertebrate Ecology 38 Lizard Island Research Station 5 Department of Vertebrate Ecology 38 Research Associates 6 Camden Haven Wildlife Refuge Study 39 Associates 6 Functional Anatomy Unit.. 40 National Photographic Index of Australian Director's Research Laboratory 40 Wildlife . 7 Materials Conservation Section 41 The Australian Museum Society 7 Education Section .. 47 Letter to the Premier 9 Exhibitions Department 52 Library 54 SCIENTIFIC DEPARTMENTS Photographic and Visual Aid Section 54 Department of Anthropology 13 PublicityJ Pu bl ications 55 Department of Arachnology 18 National Photographic Index of Australian Colo River Survey .. 19 Wildlife . 57 Lizard Island Research Station 59 Department of Entomology 20 The Australian Museum Society 61 Department of Herpetology 23 Appendix 1- Staff .. 62 Department of Ichthyology 24 Appendix 2-Donations 65 Department of Malacology 25 Appendix 3-Acknowledgements of Co- Department of Mammalogy 27 operation. 67 Department of Marine -
Tampa Bay Benthic Monitoring Program: Status of Middle Tampa Bay: 1993-1998
Tampa Bay Benthic Monitoring Program: Status of Middle Tampa Bay: 1993-1998 Stephen A. Grabe Environmental Supervisor David J. Karlen Environmental Scientist II Christina M. Holden Environmental Scientist I Barbara Goetting Environmental Specialist I Thomas Dix Environmental Scientist II MARCH 2003 1 Environmental Protection Commission of Hillsborough County Richard Garrity, Ph.D. Executive Director Gerold Morrison, Ph.D. Director, Environmental Resources Management Division 2 INTRODUCTION The Environmental Protection Commission of Hillsborough County (EPCHC) has been collecting samples in Middle Tampa Bay 1993 as part of the bay-wide benthic monitoring program developed to (Tampa Bay National Estuary Program 1996). The original objectives of this program were to discern the ―health‖—or ―status‖-- of the bay’s sediments by developing a Benthic Index for Tampa Bay as well as evaluating sediment quality by means of Sediment Quality Assessment Guidelines (SQAGs). The Tampa Bay Estuary Program provided partial support for this monitoring. This report summarizes data collected during 1993-1998 from the Middle Tampa Bay segment of Tampa Bay. 3 METHODS Field Collection and Laboratory Procedures: A total of 127 stations (20 to 24 per year) were sampled during late summer/early fall ―Index Period‖ 1993-1998 (Appendix A). Sample locations were randomly selected from computer- generated coordinates. Benthic samples were collected using a Young grab sampler following the field protocols outlined in Courtney et al. (1993). Laboratory procedures followed the protocols set forth in Courtney et al. (1995). Data Analysis: Species richness, Shannon-Wiener diversity, and Evenness were calculated using PISCES Conservation Ltd.’s (2001) ―Species Diversity and Richness II‖ software. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora)
Gulf of Mexico Science Volume 34 Article 4 Number 1 Number 1/2 (Combined Issue) 2018 Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Laguna Madre, Tamaulipas, Mexico: Spatial and Temporal Distribution Martha Reguero Universidad Nacional Autónoma de México Andrea Raz-Guzmán Universidad Nacional Autónoma de México DOI: 10.18785/goms.3401.04 Follow this and additional works at: https://aquila.usm.edu/goms Recommended Citation Reguero, M. and A. Raz-Guzmán. 2018. Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Laguna Madre, Tamaulipas, Mexico: Spatial and Temporal Distribution. Gulf of Mexico Science 34 (1). Retrieved from https://aquila.usm.edu/goms/vol34/iss1/4 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf of Mexico Science by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Reguero and Raz-Guzmán: Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Lagu Gulf of Mexico Science, 2018(1), pp. 32–55 Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Laguna Madre, Tamaulipas, Mexico: Spatial and Temporal Distribution MARTHA REGUERO AND ANDREA RAZ-GUZMA´ N Molluscs were collected in Laguna Madre from seagrass beds, macroalgae, and bare substrates with a Renfro beam net and an otter trawl. The species list includes 96 species and 48 families. Six species are dominant (Bittiolum varium, Costoanachis semiplicata, Brachidontes exustus, Crassostrea virginica, Chione cancellata, and Mulinia lateralis) and 25 are commercially important (e.g., Strombus alatus, Busycoarctum coarctatum, Triplofusus giganteus, Anadara transversa, Noetia ponderosa, Brachidontes exustus, Crassostrea virginica, Argopecten irradians, Argopecten gibbus, Chione cancellata, Mercenaria campechiensis, and Rangia flexuosa). -
Notes on the Systematics, Morphology and Biostratigraphy of Fossil Holoplanktonic Mollusca, 22 1
B76-Janssen-Grebnev:Basteria-2010 11/07/2012 19:23 Page 15 Notes on the systematics, morphology and biostratigraphy of fossil holoplanktonic Mollusca, 22 1. Further pelagic gastropods from Viti Levu, Fiji Archipelago Arie W. Janssen Netherlands Centre for Biodiversity Naturalis (Palaeontology Department), P.O. Box 9517, NL-2300 RA Leiden, The Netherlands; currently: 12, Triq tal’Hamrija, Xewkija XWK 9033, Gozo, Malta; [email protected] Andrew Grebneff † Formerly : University of Otago, Geology Department, Dunedin, New Zealand himself during holiday trips in 1995 and 1996, also from Viti Two localities in the island of Viti Levu, Fiji Archipelago, Levu, the largest island in the Fiji archipelago. Following an yielded together 28 species of Heteropoda (3 species) and initial evaluation of this material it remained unstudied, 15 Pteropoda (25 species). Two samples from Tabataba, NW however, for a long time . A first inspection acknowledged Viti Levu, indicate an age of late Miocene to early Pliocene. Andrew’s impression that part of the samples was younger Two samples from Waila, SE Viti Levu, signify an age of than the earlier described material and therefore worth Pliocene (Piacenzian) and closely resemble coeval assem - publishing. blages described from Pangasinan, Philippines. After the untimely death of Andrew Grebneff in July 2010 (see the website of the University of Otago, New Key words: Gastropoda, Pterotracheoidea, Limacinoidea, Zealand (http://www.otago.ac.nz/geology/news/files/ Cavolinioidea, Clionoidea, late Miocene, Pliocene, biostratigraphy, andrew_ grebneff.html) it was decided to restart the study Fiji archipelago. of those samples and publish the results with Andrew’s name added as a valuable co-author, as he not only collected the specimens but also participated in discussions on their Introduction taxonomy and age. -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber ......................................................................... -
Faunal Change and Bathymetric Diversity Gradient in Deep-Sea Prosobranchs from Northeastern Atlantic
Biodiversity and Conservation (2006) Ó Springer 2006 DOI 10.1007/s10531-005-1344-9 -1 Faunal change and bathymetric diversity gradient in deep-sea prosobranchs from Northeastern Atlantic CELIA OLABARRIA1,2 1Southampton Oceanography Centre, DEEPSEAS Benthic Biology Group, Empress Dock, South- ampton SO14 3ZH, United Kingdom; 2Present address: Departamento de Ecoloxı´a e Bioloxı´a Animal, Area Ecoloxı´a, Universidad de Vigo, Campus Lagoas-Marcosende, 36310 Vigo (Pontevedra), Spain (e-mail: [email protected]; phone: +34-986-812587; fax: +34-986-812556) Received 6 January 2005; accepted in revised form 11 July 2005 Key words: Deep sea, Diversity, Faunal turnover, Northeastern Atlantic, Porcupine Abyssal Plain, Porcupine Seabight, Prosobranchs Abstract. Despite the plethora of studies, geographic patterns of diversity in deep sea remain subject of speculation. This study considers a large dataset to examine the faunal change and depth-diversity gradient of prosobranch molluscs in the Porcupine Seabight and adjacent Abyssal Plain (NE Atlantic). Rates of species succession (addition and loss) increased rapidly with increasing depth and indicated four possible areas of faunal turnover at about 700, 1600, 2800 and 4100 m. Depth was a significant predictor of diversity, explaining nearly a quarter the variance. There was a pattern of decreasing diversity downslope from 250 m to 1500–1600 m, followed by an increase to high values at about 4000 m and then again, a fall to 4915 m. Processes causing diversity patterns of prosobranchs in the Porcupine Seabight and adjacent Abyssal Plain are likely to differ in magnitude or type, from those operating in other Atlantic areas. Introduction An increasing focus for biodiversity research in the deep sea has been to test for the existence of large-scale gradients in the diversity of marine soft- sediment fauna in deep sea (e.g. -
Mollusca, Archaeogastropoda) from the Northeastern Pacific
Zoologica Scripta, Vol. 25, No. 1, pp. 35-49, 1996 Pergamon Elsevier Science Ltd © 1996 The Norwegian Academy of Science and Letters Printed in Great Britain. All rights reserved 0300-3256(95)00015-1 0300-3256/96 $ 15.00 + 0.00 Anatomy and systematics of bathyphytophilid limpets (Mollusca, Archaeogastropoda) from the northeastern Pacific GERHARD HASZPRUNAR and JAMES H. McLEAN Accepted 28 September 1995 Haszprunar, G. & McLean, J. H. 1995. Anatomy and systematics of bathyphytophilid limpets (Mollusca, Archaeogastropoda) from the northeastern Pacific.—Zool. Scr. 25: 35^9. Bathyphytophilus diegensis sp. n. is described on basis of shell and radula characters. The radula of another species of Bathyphytophilus is illustrated, but the species is not described since the shell is unknown. Both species feed on detached blades of the surfgrass Phyllospadix carried by turbidity currents into continental slope depths in the San Diego Trough. The anatomy of B. diegensis was investigated by means of semithin serial sectioning and graphic reconstruction. The shell is limpet like; the protoconch resembles that of pseudococculinids and other lepetelloids. The radula is a distinctive, highly modified rhipidoglossate type with close similarities to the lepetellid radula. The anatomy falls well into the lepetelloid bauplan and is in general similar to that of Pseudococculini- dae and Pyropeltidae. Apomorphic features are the presence of gill-leaflets at both sides of the pallial roof (shared with certain pseudococculinids), the lack of jaws, and in particular many enigmatic pouches (bacterial chambers?) which open into the posterior oesophagus. Autapomor- phic characters of shell, radula and anatomy confirm the placement of Bathyphytophilus (with Aenigmabonus) in a distinct family, Bathyphytophilidae Moskalev, 1978. -
Comparative Analysis of Chromosome Counts Infers Three Paleopolyploidies in the Mollusca
GBE Comparative Analysis of Chromosome Counts Infers Three Paleopolyploidies in the Mollusca Nathaniel M. Hallinan* and David R. Lindberg Department of Integrative Biology, University of California Berkeley *Corresponding author: E-mail: [email protected]. Accepted: 8 August 2011 Abstract The study of paleopolyploidies requires the comparison of multiple whole genome sequences. If the branches of a phylogeny on which a whole-genome duplication (WGD) occurred could be identified before genome sequencing, taxa could be selected that provided a better assessment of that genome duplication. Here, we describe a likelihood model in which the number of chromosomes in a genome evolves according to a Markov process with one rate of chromosome duplication and loss that is proportional to the number of chromosomes in the genome and another stochastic rate at which every chromosome in the genome could duplicate in a single event. We compare the maximum likelihoods of a model in which the genome duplication rate varies to one in which it is fixed at zero using the Akaike information criterion, to determine if a model with WGDs is a good fit for the data. Once it has been determined that the data does fit the WGD model, we infer the phylogenetic position of paleopolyploidies by calculating the posterior probability that a WGD occurred on each branch of the taxon tree. Here, we apply this model to a molluscan tree represented by 124 taxa and infer three putative WGD events. In the Gastropoda, we identify a single branch within the Hypsogastropoda and one of two branches at the base of the Stylommatophora.