Carniflora Australis No.11 March 2008
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Evaluating the Adaptive Evolutionary Convergence of Carnivorous Plant Taxa Through Functional Genomics
Evaluating the adaptive evolutionary convergence of carnivorous plant taxa through functional genomics Gregory L. Wheeler and Bryan C. Carstens Department of Evolution, Ecology, & Organismal Biology, The Ohio State University, Columbus, OH, United States of America ABSTRACT Carnivorous plants are striking examples of evolutionary convergence, displaying complex and often highly similar adaptations despite lack of shared ancestry. Using available carnivorous plant genomes along with non-carnivorous reference taxa, this study examines the convergence of functional overrepresentation of genes previously implicated in plant carnivory. Gene Ontology (GO) coding was used to quantitatively score functional representation in these taxa, in terms of proportion of carnivory- associated functions relative to all functional sequence. Statistical analysis revealed that, in carnivorous plants as a group, only two of the 24 functions tested showed a signal of substantial overrepresentation. However, when the four carnivorous taxa were analyzed individually, 11 functions were found to be significant in at least one taxon. Though carnivorous plants collectively may show overrepresentation in functions from the predicted set, the specific functions that are overrepresented vary substantially from taxon to taxon. While it is possible that some functions serve a similar practical purpose such that one taxon does not need to utilize both to achieve the same result, it appears that there are multiple approaches for the evolution of carnivorous function in plant genomes. Our approach could be applied to tests of functional convergence in other systems provided on the availability of genomes and annotation data for a group. Submitted 27 October 2017 Accepted 13 January 2018 Subjects Bioinformatics, Evolutionary Studies, Genomics, Plant Science Published 31 January 2018 Keywords Carnivorous plants, Gene Ontology, Functional genomics, Convergent evolution Corresponding author Gregory L. -
Carnivorous Plant Responses to Resource Availability
Carnivorous plant responses to resource availability: environmental interactions, morphology and biochemistry Christopher R. Hatcher A doctoral thesis submitted in partial fulfilment of requirements for the award of Doctor of Philosophy of Loughborough University November 2019 © by Christopher R. Hatcher (2019) Abstract Understanding how organisms respond to resources available in the environment is a fundamental goal of ecology. Resource availability controls ecological processes at all levels of organisation, from molecular characteristics of individuals to community and biosphere. Climate change and other anthropogenically driven factors are altering environmental resource availability, and likely affects ecology at all levels of organisation. It is critical, therefore, to understand the ecological impact of environmental variation at a range of spatial and temporal scales. Consequently, I bring physiological, ecological, biochemical and evolutionary research together to determine how plants respond to resource availability. In this thesis I have measured the effects of resource availability on phenotypic plasticity, intraspecific trait variation and metabolic responses of carnivorous sundew plants. Carnivorous plants are interesting model systems for a range of evolutionary and ecological questions because of their specific adaptations to attaining nutrients. They can, therefore, provide interesting perspectives on existing questions, in this case trait-environment interactions, plant strategies and plant responses to predicted future environmental scenarios. In a manipulative experiment, I measured the phenotypic plasticity of naturally shaded Drosera rotundifolia in response to disturbance mediated changes in light availability over successive growing seasons. Following selective disturbance, D. rotundifolia became more carnivorous by increasing the number of trichomes and trichome density. These plants derived more N from prey and flowered earlier. -
A New Carnivorous Plant Lineage (Triantha) with a Unique Sticky-Inflorescence Trap
A new carnivorous plant lineage (Triantha) with a unique sticky-inflorescence trap Qianshi Lina,b,1, Cécile Anéc,d, Thomas J. Givnishc, and Sean W. Grahama,b aDepartment of Botany, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; bUBC Botanical Garden, University of British Columbia, Vancouver, BC V6T 1Z4, Canada; cDepartment of Botany, University of Wisconsin–Madison, Madison, WI 53706; and dDepartment of Statistics, University of Wisconsin–Madison, Madison WI 53706 Edited by Elizabeth A. Kellogg, Donald Danforth Plant Science Center, St. Louis, MO, and approved June 5, 2021 (received for review October 30, 2020) Carnivorous plants consume animals for mineral nutrients that and in wetlands, including bogs, marly shorelines, and calcareous enhance growth and reproduction in nutrient-poor environments. spring-fed fens. In bogs, T. occidentalis is commonly found with Here, we report that Triantha occidentalis (Tofieldiaceae) represents recognized carnivorous plants such as Drosera rotundifolia a previously overlooked carnivorous lineage that captures insects on (Droseraceae) and Pinguicula vulgaris (Lentibulariaceae). During sticky inflorescences. Field experiments, isotopic data, and mixing the summer flowering season, T. occidentalis produces leafless models demonstrate significant N transfer from prey to Triantha, erect flowering stems up to 80 cm tall (12). These scapes have with an estimated 64% of leaf N obtained from prey capture in sticky glandular hairs, especially on their upper portions, a feature previous years, comparable to levels inferred for the cooccurring distinguishing Triantha from other genera of Tofieldiaceae round-leaved sundew, a recognized carnivore. N obtained via carnivory (Fig. 1). Small insects are often found trapped by these hairs; is exported from the inflorescence and developing fruits and may herbarium specimens are frequently covered in insects (Fig. -
Carniflora News
THE AUSTRALASIAN CARNIVOROUS PLANTS SOCIETY INC. CARNIFLORA NEWS January 2016 Welcome to Carniflora News, a newsletter produced by IN THIS ISSUE the Australasian Carnivorous Plants Society Inc. that News documents the meetings, news and events of the Meeting Summary society. In the Greenhouse Seed Bank News NEWS Classifieds & Sponsors Contact Us Membership Membership Form UPCOMING EVENTS 8th January 2016 AUSCPS Meeting Plant theme - Dionaea Membership is now open for 2016. 12th February 2016 The Australasian Carnivorous Plants Society Inc. is AUSCPS AGM now offering two forms of membership to cater for Plant theme - Utricularia, those who want to receive electronic versions of Aldrovanda, Genlisea Carniflora Australis ($25) and those who still prefer the printed version ($35). The difference in cost is to cater 11th March 2016 for the increase in postage and printing fees of the AUSCPS Meeting journal. Plant theme - Drosera, Byblis Over the past year the society Executive has been busy reviewing, updating and implementing existing 9-10th April 2016 services to reach a broader range of enthusiasts and Collectors Plant Fair provide value for money for your membership fee. New memberships and renewal’s may be achieved by 8th April 2016 attending our monthly meetings or by completing the AUSCPS Meeting membership form attached to this newsletter. Plant theme - Pinguicula Without a strong and committed membership the 13th May 2016 Australasian Carnivorous Plant Society Inc. will cease AUSCPS Meeting to exist, so if you love carnivorous plants, love to read Plant theme - Pygmy Drosera Carniflora Australis and love to meet other growers and collectors, then NOW is the time to join. -
South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae)
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2013 South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae) Lendel, Anita Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-93287 Dissertation Published Version Originally published at: Lendel, Anita. South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae). 2013, University of Zurich, Faculty of Science. South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae) _________________________________________________________________________________ Dissertation zur Erlangung der naturwissenschaftlichen Doktorwürde (Dr.sc.nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultät der Universität Zürich von Anita Lendel aus Kroatien Promotionskomitee: Prof. Dr. H. Peter Linder (Vorsitz) PD. Dr. Reto Nyffeler Prof. Dr. Elena Conti Zürich, 2013 Table of Contents Acknowledgments 1 Introduction 3 Chapter 1. Phylogenetics and taxonomy of the tribe Cereeae s.l., with particular focus 15 on the subtribe Trichocereinae (Cactaceae – Cactoideae) Chapter 2. Floral evolution in the South American tribe Cereeae s.l. (Cactaceae: 53 Cactoideae): Pollination syndromes in a comparative phylogenetic context Chapter 3. Contemporaneous and recent radiations of the world’s major succulent 86 plant lineages Chapter 4. Tackling the molecular dating paradox: underestimated pitfalls and best 121 strategies when fossils are scarce Outlook and Future Research 207 Curriculum Vitae 209 Summary 211 Zusammenfassung 213 Acknowledgments I really believe that no one can go through the process of doing a PhD and come out without being changed at a very profound level. -
Carnivorous Plant Newsletter V44 N4 December 2015
Technical Refereed Contribution Photoperiod regulates Cape Sundew (Drosera capensis) gland secretion and leaf development Wang Dong-Hui • College of Life Science • Peking University • Haidian • Beijing 100871 • PRC Wang Dong-Qi • Cui Yi-Wei • Yang Lu • Gu Xiao-Di • Song Wen-Fei • Li Feng • The High School Affiliated to Renmin University of China • Haidian • Beijing 100080 • PRC • lifeng2004@pku. edu.cn Keywords: carnivorous plant, photoperiod, plant development, Drosera capensis. Abstract: Cape Sundew (Drosera capensis), a carnivorous plant that catches flies with sticky mu- cus, has attracted great interest among botanists and horticulture hobbyists since the Darwin era. But little is known about how this carnivorous plant regulates morphogenesis and organ formation to accommodate environmental changes. In this article we present the relationship between gland secretion of Cape Sundew and photoperiod utilizing various physiological and morphological meth- ods. We show that Cape Sundew grows faster and secretes more mucus under long days than under short days. Under long days leaf length and the blade\petiole ratio increases, leading to increased fly catching capacities. More importantly, in the short term, the rhythm of photoperiod causes Cape Sundew to secrete mucus independent of photo intensity. Introduction As one of the most special plant groups, carnivorous plants perform photosynthesis and feed on insects and some large carnivorous plants even prey on birds and small mammals. Darwin believed that a carnivorous plant was one of the most astonishing phenomena in the world (Dar- win 1875; Ellison & Gotelli 2009). Carnivorous plants are represented by more than 600 species belonging to 20 genera (Ellison & Gotelli 2001; McPherson 2010). -
Newsletter of the Carnivorous Plant Society
Volume 14 Number 2 October, November, December 2000 ISSN 1323€159 PR|CE gO.00 Free with Membershlp /l ) _ l)Toserq (rtnerv r a Newsletter of the Carnivorous plant Society of New South Wales (Sydney, Australia) CARNIVOROUS PLANT SOCIETY OF NEW SOUTH WALES CONTENTS Page www.carnivorousplants.asn.au Chat Corner Jessica Biddlecombe 4-5 g PO Box The winners of the 2000 NSWCPS show 6 Kingsway West NSW 2208 C.P.s in the wild AUSTRALIA AndrewBroome 7-8 E-mall : [email protected] Carnivorous Plants Near Hermanus, South Af- Robert Gibson 8-23 rica COMMITTEE Never give up on Drossophyllum lussitanicum Sami Marjanen 24 Name Telephone(02) E-mail seed Preldcnt Kirstie Wulf 4739 5825 [email protected] Flyfap Question Corner 24 Vlcc Prcsldcnt Peter Biddlecombe 9554 367t Sccrctrry Jessica Biddlecombe 9554 3678 Trclsurer Jand Pearce Seed Brnk Menegcr Greg Bourke 9548 3678 sydneycamivorous@homail. com I Editor Greg Bourke 9s48 3678 [email protected] MEETINGS Llbnrinn Jessica Biddlecombe 9554 367E Meetings are held on the second Friday of each month . Time: 7:30pm- l0.00pm Web Mrstcr Chris McClellan [email protected] Venue: WoodSock Community Cente, Church Steet Burwood Commlttec Memberr Scou Sullivan Jose De Costa 9584 9893 Date Sperker Phnt of the Month Helmut Kibellis 9634 6793 l2 January 2001 Propagating Drosera - Greg Bourke Dionaea / Drosera MEMBERSHIP 9 February 2001 Ubicularia - Greg Bourke Uticularia / Byblis 2000-2001 (Financial Year) Subscription 9 March 2001 Nepenthes All members, single, family and overseas AU $20.00 Please make cheques or money orders payable to the No meeting in April (Good Friday) Carnivorous Plant Society of New South Wales. -
Phylogeny and Biogeography of the Carnivorous Plant Family Droseraceae with Representative Drosera Species From
F1000Research 2017, 6:1454 Last updated: 10 AUG 2021 RESEARCH ARTICLE Phylogeny and biogeography of the carnivorous plant family Droseraceae with representative Drosera species from Northeast India [version 1; peer review: 1 approved, 1 not approved] Devendra Kumar Biswal 1, Sureni Yanthan2, Ruchishree Konhar 1, Manish Debnath 1, Suman Kumaria 2, Pramod Tandon2,3 1Bioinformatics Centre, North-Eastern Hill University, Shillong, Meghalaya, 793022, India 2Department of Botany, North-Eastern Hill University, Shillong, Meghalaya, 793022, India 3Biotech Park, Jankipuram, Uttar Pradesh, 226001, India v1 First published: 14 Aug 2017, 6:1454 Open Peer Review https://doi.org/10.12688/f1000research.12049.1 Latest published: 14 Aug 2017, 6:1454 https://doi.org/10.12688/f1000research.12049.1 Reviewer Status Invited Reviewers Abstract Background: Botanical carnivory is spread across four major 1 2 angiosperm lineages and five orders: Poales, Caryophyllales, Oxalidales, Ericales and Lamiales. The carnivorous plant family version 1 Droseraceae is well known for its wide range of representatives in the 14 Aug 2017 report report temperate zone. Taxonomically, it is regarded as one of the most problematic and unresolved carnivorous plant families. In the present 1. Andreas Fleischmann, Ludwig-Maximilians- study, the phylogenetic position and biogeographic analysis of the genus Drosera is revisited by taking two species from the genus Universität München, Munich, Germany Drosera (D. burmanii and D. Peltata) found in Meghalaya (Northeast 2. Lingaraj Sahoo, Indian Institute of India). Methods: The purposes of this study were to investigate the Technology Guwahati (IIT Guwahati) , monophyly, reconstruct phylogenetic relationships and ancestral area Guwahati, India of the genus Drosera, and to infer its origin and dispersal using molecular markers from the whole ITS (18S, 28S, ITS1, ITS2) region Any reports and responses or comments on the and ribulose bisphosphate carboxylase (rbcL) sequences. -
FILOGENIA E BIOGEOGRAFIA DE DROSERACEAE INFERIDAS a PARTIR DE CARACTERES MORFOLÓGICOS E MOLECULARES (18S, Atpb, Matk, Rbcl E ITS)
FILOGENIA E BIOGEOGRAFIA DE DROSERACEAE INFERIDAS A PARTIR DE CARACTERES MORFOLÓGICOS E MOLECULARES (18S, atpB, matK, rbcL e ITS) VITOR FERNANDES OLIVEIRA DE MIRANDA Tese apresentada ao Instituto de Biociências da Universidade Estadual Paulista “Julio de Mesquita Filho”, Campus de Rio Claro, para a obtenção do título de Doutor em Ciências Biológicas (Área de Concentração: Biologia Vegetal) Rio Claro Estado de São Paulo – Brasil Abril de 2.006 FILOGENIA E BIOGEOGRAFIA DE DROSERACEAE INFERIDAS A PARTIR DE CARACTERES MORFOLÓGICOS E MOLECULARES (18S, atpB, matK, rbcL e ITS) VITOR FERNANDES OLIVEIRA DE MIRANDA Orientador: Prof. Dr. ANTONIO FURLAN Co-orientador: Prof. Dr. MAURÍCIO BACCI JÚNIOR Tese apresentada ao Instituto de Biociências da Universidade Estadual Paulista “Julio de Mesquita Filho”, Campus de Rio Claro, para a obtenção do título de Doutor em Ciências Biológicas (Área de Concentração: Biologia Vegetal) Rio Claro Estado de São Paulo – Brasil Abril de 2.006 582 Miranda, Vitor Fernandes Oliveira de M672f Filogenia e biogeografia de Droseraceae inferidas a partir de caracteres morfológicos e moleculares (18S, atpB, matK, rbcL e ITS) / Vitor Fernandes Oliveira de Miranda. – Rio Claro : [s.n.], 2006 132 f. : il., figs., tabs., fots. Tese (doutorado) – Universidade Estadual Paulista, Institu- to de Biociências de Rio Claro Orientador: Antonio Furlan Co-orientador: Mauricio Bacci Junior 1. Botânica – Classificação. 2. Botânica sistemática molecu- lar. 3. Aldrovanda. 4. Dionaea. 5. Drosera. 6. DNA. I. Título. Ficha Catalográfica elaborada pela STATI – Biblioteca da UNESP Campus de Rio Claro/SP iv Agradecimentos Ao Prof. Furlan por sua sabedoria, por toda a sua paciência, por toda a sua compreensão, que sempre soube me ouvir e sempre me viu, acima de tudo, como pessoa. -
Rethinking Phylogenetics Using Caryophyllales (Angiosperms), Matk Gene and Trnk Intron As Experimental Platform
Rethinking phylogenetics using Caryophyllales (angiosperms), matK gene and trnK intron as experimental platform Sunny Sheliese Crawley Dissertation submitted to the faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy In Biological Sciences Khidir W. Hilu Eric P. Beers Carla V. Finkielstein Jill C. Sible December 2, 2011 Blacksburg, Virginia Keywords: (phylogeny, missing data, caryophyllids, trnK intron, matK, RNA editing, gnetophytes) Copyright 2011, Sunny Sheliese Crawley Rethinking phylogenetics using Caryophyllales (angiosperms), matK gene and trnK intron as experimental platform Sunny Sheliese Crawley ABSTRACT The recent call to reconstruct a detailed picture of the tree of life for all organisms has forever changed the field of molecular phylogenetics. Sequencing technology has improved to the point that scientists can now routinely sequence complete plastid/mitochondrial genomes and thus, vast amounts of data can be used to reconstruct phylogenies. These data are accumulating in DNA sequence repositories, such as GenBank, where everyone can benefit from the vast growth of information. The trend of generating genomic-region rich datasets has far outpaced the expasion of datasets by sampling a broader array of taxa. We show here that expanding a dataset both by increasing genomic regions and species sampled using GenBank data, despite the inherent missing DNA that comes with GenBank data, can provide a robust phylogeny for the plant order Caryophyllales (angiosperms). We also investigate the utility of trnK intron in phylogeny reconstruction at relativley deep evolutionary history (the caryophyllid order) by comparing it with rapidly evolving matK. We show that trnK intron is comparable to matK in terms of the proportion of variable sites, parsimony informative sites, the distribution of those sites among rate classes, and phylogenetic informativness across the history of the order. -
Roridula Gorgonias and a Non-Carnivorous Relative, Clethra Arborea
Mathematisch-Naturwissenschaftliche Fakultät Stefanie Hartmann | Michaela Preick | Silke Abelt | André Scheffel | Michael Hofreiter Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea Suggested citation referring to the original publication: BMC Research Notes 13 (2020), Art. 426 DOI https://doi.org/10.1186/s13104-020-05254-4 ISSN 1756-0500 Postprint archived at the Institutional Repository of the Potsdam University in: Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe 1141 ISSN: 1866-8372 https://nbn-resolving.org/urn:nbn:de:kobv:517-opus4-503752 DOI: https://doi.org/10.25932/publishup-50375 Hartmann et al. BMC Res Notes (2020) 13:426 https://doi.org/10.1186/s13104-020-05254-4 BMC Research Notes RESEARCH NOTE Open Access Annotated genome sequences of the carnivorous plant Roridula gorgonias and a non-carnivorous relative, Clethra arborea Stefanie Hartmann1* , Michaela Preick1, Silke Abelt1, André Schefel2 and Michael Hofreiter1 Abstract Objective: Plant carnivory is distributed across the tree of life and has evolved at least six times independently, but sequenced and annotated nuclear genomes of carnivorous plants are currently lacking. We have sequenced and structurally annotated the nuclear genome of the carnivorous Roridula gorgonias and that of a non-carnivorous rela- tive, Madeira’s lily-of-the-valley-tree, Clethra arborea, both within the Ericales. This data adds an important resource to study the evolutionary genetics of plant carnivory across angiosperm lineages and also for functional and systematic aspects of plants within the Ericales. Results: Our assemblies have total lengths of 284 Mbp (R. gorgonias) and 511 Mbp (C. arborea) and show high BUSCO scores of 84.2% and 89.5%, respectively. -
Co-Extinction of Mutualistic Species – an Analysis of Ornithophilous Angiosperms in New Zealand
DEPARTMENT OF BIOLOGICAL AND ENVIRONMENTAL SCIENCES CO-EXTINCTION OF MUTUALISTIC SPECIES An analysis of ornithophilous angiosperms in New Zealand Sandra Palmqvist Degree project for Master of Science (120 hec) with a major in Environmental Science ES2500 Examination Course in Environmental Science, 30 hec Second cycle Semester/year: Spring 2021 Supervisor: Søren Faurby - Department of Biological & Environmental Sciences Examiner: Johan Uddling - Department of Biological & Environmental Sciences “Tui. Adult feeding on flax nectar, showing pollen rubbing onto forehead. Dunedin, December 2008. Image © Craig McKenzie by Craig McKenzie.” http://nzbirdsonline.org.nz/sites/all/files/1200543Tui2.jpg Table of Contents Abstract: Co-extinction of mutualistic species – An analysis of ornithophilous angiosperms in New Zealand ..................................................................................................... 1 Populärvetenskaplig sammanfattning: Samutrotning av mutualistiska arter – En analys av fågelpollinerade angiospermer i New Zealand ................................................................... 3 1. Introduction ............................................................................................................................... 5 2. Material and methods ............................................................................................................... 7 2.1 List of plant species, flower colours and conservation status ....................................... 7 2.1.1 Flower Colours .............................................................................................................