Nutritional Biochemistry of the Vitamins
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Electronic Supplementary Material (ESI) for Analyst. This Journal Is © the Royal Society of Chemistry 2017
Electronic Supplementary Material (ESI) for Analyst. This journal is © The Royal Society of Chemistry 2017 Supplemental Table 2. Proteins Increased in Either Blood or Horizon media Table 2A. Proteins Increased in Spores Produced on Horizon Soil Over Spores Produced on Blood Medium quasi.fdr Protein Protein Class/Name KEGG Pathway Names or Function (if ID Pathways found in KEGG) Amino Acid Metabolism bat00250, bat00280, Alanine, aspartate and glutamate metabolism, bat00410, Valine, leucine and isoleucine degradation, bat00640, beta-Alanine metabolism to acetyl CoA, 4.50E-07 BAS0310 4-aminobutyrate aminotransferase bat00650 Propanoate metabolism, Butanoate metabolism bat00270, bat00330, Cysteine and methionine metabolism, Arginine bat00410, and proline metabolism, beta-Alanine 3.84E-10 BAS5060 spermidine synthase bat00480 metabolism, Glutathione metabolism bat00270, bat00330, Cysteine and methionine metabolism, Arginine bat00410, and proline metabolism, beta-Alanine 2.30E-09 BAS5219 spermidine synthase bat00480 metabolism, Glutathione metabolism bat00250, Alanine, aspartate and glutamate metabolism, 6.94E-07 BAS0561 alanine dehydrogenase bat00430 Taurine and hypotaurine metabolism bat00250, Alanine, aspartate and glutamate metabolism, 5.23E-07 BAS4521 alanine dehydrogenase bat00430 Taurine and hypotaurine metabolism 0.005627 BAS5218 agmatinase, putative bat00330 Arginine and proline metabolism 2,3,4,5-tetrahydropyridine-2- carboxylate N-succinyltransferase, 1.40E-10 BAS3891 putative bat00300 Lysine biosynthesis bat00010, bat00020, Glycolysis -
Control Engineering Perspective on Genome-Scale Metabolic Modeling
Control Engineering Perspective on Genome-Scale Metabolic Modeling by Andrew Louis Damiani A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama December 12, 2015 Key words: Scheffersomyces stipitis, Flux Balance Analysis, Genome-scale metabolic models, System Identification Framework, Model Validation, Phenotype Phase Plane Analysis Copyright 2015 by Andrew Damiani Approved by Jin Wang, Chair, Associate Professor of Chemical Engineering Q. Peter He, Associate Professor of Chemical Engineering, Tuskegee University Thomas W. Jeffries, Professor of Bacteriology, Emeritus; University of Wisconsin-Madison Allan E. David, Assistant Professor of Chemical Engineering Yoon Y. Lee, Professor of Chemical Engineering Abstract Fossil fuels impart major problems on the global economy and have detrimental effects to the environment, which has caused a world-wide initiative of producing renewable fuels. Lignocellulosic bioethanol for renewable energy has recently gained attention, because it can overcome the limitations that first generation biofuels impose. Nonetheless, in order to have this process commercialized, the biological conversion of pentose sugars, mainly xylose, needs to be improved. Scheffersomyces stipitis has a physiology that makes it a valuable candidate for lignocellulosic bioethanol production, and lately has provided genes for designing recombinant Saccharomyces cerevisiae. In this study, a system biology approach was taken to understand the relationship of the genotype to phenotype, whereby genome-scale metabolic models (GSMMs) are used in conjunction with constraint-based modeling. The major restriction of GSMMs is having an accurate methodology for validation and evaluation. This is due to the size and complexity of the models. -
United States Patent (19) 11) Patent Number: 4,740,373 Kesselman Et Al
United States Patent (19) 11) Patent Number: 4,740,373 Kesselman et al. (45) Date of Patent: Apr. 26, 1988 54 STABILIZATION OF 3,932,634 1/1976 Kardys ................................ 424/237 MULTIVITAMEN/TRACE ELEMENTS 4,228,159 10/1980 MacMillan .......................... 424/145 FORMULATIONS 4,268,529 5/1981 Davis et al............................ 426/72 (75 Inventors: Morris Kesselman, Belmar, N.J.; FOREIGN PATENT DOCUMENTS Abdur R. Purkaystha, Bronx; James 0161915 11/1985 European Pat. Off............. 514/970 Cahill, Riverdale, both of N.Y. 58-198416 11/1983 Japan ................................... 514/970 (73) Assignee: USV Pharmaceutical Corporation 1080626 8/1967 United Kingdom . 21 Appl. No.: 866,842 OTHER PUBLICATIONS 22) Fied: May 27, 1986 Chem. Abst., 99:10856s (1983)-Heidt. Chem. Abst., 105:1 1967h (1986)-Vervloet et al. 51 Int. Cl.' ..................... A61K 33/34; A61K 31/07; The Effects of Ascorbic Acid and Trace Elements on A61K 31/195; A61K 31/44 Vitamin B12 Assays, J. Am. Pharm. Assoc., 43:87-90, (52) U.S. C. ...................................... 424/141; 514/52; 1954. 514/167; 514/168; 514/249; 514/251; 514/276; 514/458; 514/474; 514/499; 514/548; 514/681; Primary Examiner-Douglas W. Robinson 514/905; 514/970 (57) ABSTRACT (58) Field of Search ................. 514/167, 168, 970, 52, 514/905, 251, 276, 458,548, 681, 249, 474, 499; Disclosed are aqueous multivitamin/trace elements 424/141 formulations stabilized by a water soluble, organic acid that contains carbon-to-carbon unsaturation and water 56) References Cited soluble salts thereof selected from the group consisting U.S. PATENT DOCUMENTS of maleic acid, fumaric acid, maleamic acid and acrylic acid. -
Title 16. Crimes and Offenses Chapter 13. Controlled Substances Article 1
TITLE 16. CRIMES AND OFFENSES CHAPTER 13. CONTROLLED SUBSTANCES ARTICLE 1. GENERAL PROVISIONS § 16-13-1. Drug related objects (a) As used in this Code section, the term: (1) "Controlled substance" shall have the same meaning as defined in Article 2 of this chapter, relating to controlled substances. For the purposes of this Code section, the term "controlled substance" shall include marijuana as defined by paragraph (16) of Code Section 16-13-21. (2) "Dangerous drug" shall have the same meaning as defined in Article 3 of this chapter, relating to dangerous drugs. (3) "Drug related object" means any machine, instrument, tool, equipment, contrivance, or device which an average person would reasonably conclude is intended to be used for one or more of the following purposes: (A) To introduce into the human body any dangerous drug or controlled substance under circumstances in violation of the laws of this state; (B) To enhance the effect on the human body of any dangerous drug or controlled substance under circumstances in violation of the laws of this state; (C) To conceal any quantity of any dangerous drug or controlled substance under circumstances in violation of the laws of this state; or (D) To test the strength, effectiveness, or purity of any dangerous drug or controlled substance under circumstances in violation of the laws of this state. (4) "Knowingly" means having general knowledge that a machine, instrument, tool, item of equipment, contrivance, or device is a drug related object or having reasonable grounds to believe that any such object is or may, to an average person, appear to be a drug related object. -
Kynurenine and Tetrahydrobiopterin Pathways Crosstalk in Pain Hypersensitivity
fnins-14-00620 June 27, 2020 Time: 15:13 # 1 REVIEW published: 24 June 2020 doi: 10.3389/fnins.2020.00620 Kynurenine and Tetrahydrobiopterin Pathways Crosstalk in Pain Hypersensitivity Ananda Staats Pires1,2, Vanessa X. Tan1, Benjamin Heng1, Gilles J. Guillemin1* and Alexandra Latini2* 1 Neuroinflammation Group, Department of Biomedical Sciences, Centre for Motor Neuron Disease Research, Faculty of Medicine, Health and Human Sciences, Macquarie University, Sydney, NSW, Australia, 2 Laboratório de Bioenergética e Estresse Oxidativo, Departamento de Bioquímica, Centro de Ciências Biológicas, Universidade Federal de Santa Catarina, Florianópolis, Brazil Despite the identification of molecular mechanisms associated with pain persistence, no Edited by: significant therapeutic improvements have been made. Advances in the understanding Marianthi Papakosta, of the molecular mechanisms that induce pain hypersensitivity will allow the Takeda Pharmaceutical Company Limited, United States development of novel, effective, and safe therapies for chronic pain. Various pro- Reviewed by: inflammatory cytokines are known to be increased during chronic pain, leading Wladyslaw-Lason, to sustained inflammation in the peripheral and central nervous systems. The Institute of Pharmacology (PAS), Poland pro-inflammatory environment activates additional metabolic routes, including the Ewa Krystyna kynurenine (KYN) and tetrahydrobiopterin (BH4) pathways, which generate bioactive Szczepanska-Sadowska, soluble metabolites with the potential to modulate neuropathic and inflammatory pain Medical University of Warsaw, Poland sensitivity. Inflammation-induced upregulation of indoleamine 2,3-dioxygenase 1 (IDO1) *Correspondence: Gilles J. Guillemin and guanosine triphosphate cyclohydrolase I (GTPCH), both rate-limiting enzymes [email protected] of KYN and BH4 biosynthesis, respectively, have been identified in experimental Alexandra Latini [email protected] chronic pain models as well in biological samples from patients affected by chronic pain. -
Defective Repression of OLE3::LUC 1 (DROL1) Is Specifically Required for the Splicing of AT–AC-Type Introns in Arabidopsis
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.19.345900; this version posted October 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Defective Repression of OLE3::LUC 1 (DROL1) is specifically required for the splicing of 2 AT–AC-type introns in Arabidopsis 3 4 Takamasa Suzuki1*, Tomomi Shinagawa1, Tomoko Niwa1, Hibiki Akeda1, Satoki 5 Hashimoto1, Hideki Tanaka1, Fumiya Yamasaki1, Tsutae Kawai1, Tetsuya Higashiyama2, 3, 4, 6 Kenzo Nakamura1 7 8 1Department of Biological Chemistry, College of Bioscience and Biotechnology, Chubu 9 University, 1200 Matsumoto-cho, Kasugai, Aichi 487-8501, Japan 10 2Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Furo-cho, 11 Chikusa-ku, Nagoya, Aichi 464-8601, Japan; 12 3Division of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Aichi 13 464-8602, Japan; 14 4Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 15 Hongo, Bukyo-ku, Tokyo 113-0033, Japan 16 17 *Corresponding author: 18 Phone: +81-568-51-6369 19 Fax: +81-568-52-6594 20 E-mail: [email protected] 21 22 Running title: DROL1 specifically splice AT–AC introns 23 24 The authors responsible for distribution of materials integral to the findings presented in this 25 article in accordance with the policy described in the Instructions for Authors 26 (www.plantcell.org) are: Takamasa S. -
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Food & Function Accepted Manuscript This is an Accepted Manuscript, which has been through the Royal Society of Chemistry peer review process and has been accepted for publication. Accepted Manuscripts are published online shortly after acceptance, before technical editing, formatting and proof reading. Using this free service, authors can make their results available to the community, in citable form, before we publish the edited article. We will replace this Accepted Manuscript with the edited and formatted Advance Article as soon as it is available. You can find more information about Accepted Manuscripts in the Information for Authors. Please note that technical editing may introduce minor changes to the text and/or graphics, which may alter content. The journal’s standard Terms & Conditions and the Ethical guidelines still apply. In no event shall the Royal Society of Chemistry be held responsible for any errors or omissions in this Accepted Manuscript or any consequences arising from the use of any information it contains. www.rsc.org/foodfunction Page 1 of 16 PleaseFood do not & Functionadjust margins Food&Function REVIEW ARTICLE Interactions between acrylamide, microorganisms, and food components – a review. Received 00th January 20xx, a† a a a a Accepted 00th January 20xx A. Duda-Chodak , Ł. Wajda , T. Tarko , P. Sroka , and P. Satora DOI: 10.1039/x0xx00000x Acrylamide (AA) and its metabolites have been recognised as potential carcinogens, but also they can cause other negative symptoms in human or animal organisms so this chemical compounds still attract a lot of attention. Those substances are www.rsc.org/ usually formed during heating asparagine in the presence of compounds that have α-hydroxycarbonyl groups, α,β,γ,δ- diunsaturated carbonyl groups or α-dicarbonyl groups. -
Everything Added to Food in the United States (EAFUS)
Everything Added to Food in the United States (EAFUS) A to Z Index Follow FDA FDA Voice Blog Most Popular Searches Home Food Drugs Medical Devices Radiation-Emitting Products Vaccines, Blood & Biologics Animal & Veterinary Cosmetics Tobacco Products Everything Added to Food in the United States (EAFUS) FDA Home Everything Added to Food in the United States (EAFUS) Everything Added to Food in the United States (EAFUS) - The list below is an alphabetical inventory representing only five of 196 fields in FDA/CFSAN's PAFA database. Definitions of the labels that are found in the inventory are: Label Definition DOCTYPE An indicator of the status of the toxicology information available for the substance in PAFA (administrative and chemical information is available on all substances): A Fully up-to-date toxicology information has been sought. S P E There is reported use of the substance, but it has not yet been assigned for toxicology literature search. A F N There is reported use of the substance, and an initial toxicology literature search is in progress. E W NI Although listed as a added to food, there is no current reported use of the substance, and, therefore, L although toxicology information may be available in PAFA, it is not being updated. N There is no reported use of the substance and there is no toxicology information available in PAFA. U L B The substance was formerly approved as a food additive but is now banned; there may be some toxicology A data available. N DOCNUM PAFA database number of the Food Additive Safety Profile volume containing the printed source information concerning the substance. -
Homology Modeling and Structural Analysis of Theflavanone 3- Hydroxylase (F3H) and Flavonoid 3`Hydroxylase (F3`H) Genes from Ginkgo Biloba (L.)
IOSR Journal of Biotechnology and Biochemistry (IOSR-JBB) ISSN: 2455-264X, Volume 7, Issue 1 (Jan. – Feb. 2021), PP 01-21 www.iosrjournals.org Homology Modeling and Structural Analysis of theFlavanone 3- Hydroxylase (F3H) and Flavonoid 3`hydroxylase (F3`H) Genes from Ginkgo biloba (L.) Mohamed ZoelfakarSayedAhmed* (Genetic Resources Department, Desert Research Center (DRC), 1, Mathaf El-MatariyaStreet, El-Matariya B.O.P 11753 El-Matariya, Cairo, Egypt.) *corresponding author: (Ahmed, M.Z.S.) Abstract: Ginkgo biloba L. is a well-known living gymnosperm fossil that has medicinal, biologically and economically value in the worldwide. In this study, bioinformatics analysis based on Homology modeling were obtainedsuch as flavanone 3-hydroxylase (GbF3H) and flavonoid 3`-hydroxylase (GbF3`H) from Ginkgo biloba L. are key enzymes in involved pathway of plant flavonoids and the anthocyanin.The full-length cDNA of F3H gene sequence (GbF3H) was isolated from G. bilobacontained a 1074 bp open reading frame(ORF) encoding a 357- amino-acid protein. The deduced GbF3H protein showed high identities to other plant F3Hs.For the full-length cDNA GbF3`H gene was contained a1674 bpopen reading frame (ORF)encoding a 556 amino acid protein.As well as, Multiple Sequence Alignment (MSAs) of selected of 30 amino acid were done using MEGA7 software with high identify and similarity.Phylogenetic analysis was performed using the amino acid sequence of GbF3H and GbF3′H with other known plant-specific F3Hs and F3′Hs to each Gymnosperm (Naked seed) and Angiosperms (Flower plant).The parameters computed by ProtParam software was obtained to the molecular weight and grand average of hydropathicity (GRAVY) for GbF3H and GbF3`H protein.The parameters computed by Protscale software was obtained to hydrophilicity scales based on different chemical and physical properties of the amino acids.We have investigated homology modelling and structure analysis to characterize of two genes (GbF3H and GbF3`H) from Ginkgo biloba to identity percentage using the SWISS-MODEL template library (SMTL). -
Investigating Acetamidase Gene Function
www.nature.com/scientificreports OPEN Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: Received: 27 May 2016 Accepted: 16 September 2016 investigating acetamidase gene Published: 06 October 2016 function Y. Liao1, T. J. Williams1, J. C. Walsh2,3, M. Ji1, A. Poljak4, P. M. G. Curmi2, I. G. Duggin3 & R. Cavicchioli1 No systems have been reported for genetic manipulation of cold-adapted Archaea. Halorubrum lacusprofundi is an important member of Deep Lake, Antarctica (~10% of the population), and is amendable to laboratory cultivation. Here we report the development of a shuttle-vector and targeted gene-knockout system for this species. To investigate the function of acetamidase/formamidase genes, a class of genes not experimentally studied in Archaea, the acetamidase gene, amd3, was disrupted. The wild-type grew on acetamide as a sole source of carbon and nitrogen, but the mutant did not. Acetamidase/formamidase genes were found to form three distinct clades within a broad distribution of Archaea and Bacteria. Genes were present within lineages characterized by aerobic growth in low nutrient environments (e.g. haloarchaea, Starkeya) but absent from lineages containing anaerobes or facultative anaerobes (e.g. methanogens, Epsilonproteobacteria) or parasites of animals and plants (e.g. Chlamydiae). While acetamide is not a well characterized natural substrate, the build-up of plastic pollutants in the environment provides a potential source of introduced acetamide. In view of the extent and pattern of distribution of acetamidase/formamidase sequences within Archaea and Bacteria, we speculate that acetamide from plastics may promote the selection of amd/fmd genes in an increasing number of environmental microorganisms. -
An Introduction to Nutrition and Metabolism, 3Rd Edition
INTRODUCTION TO NUTRITION AND METABOLISM INTRODUCTION TO NUTRITION AND METABOLISM third edition DAVID A BENDER Senior Lecturer in Biochemistry University College London First published 2002 by Taylor & Francis 11 New Fetter Lane, London EC4P 4EE Simultaneously published in the USA and Canada by Taylor & Francis Inc 29 West 35th Street, New York, NY 10001 Taylor & Francis is an imprint of the Taylor & Francis Group This edition published in the Taylor & Francis e-Library, 2004. © 2002 David A Bender All rights reserved. No part of this book may be reprinted or reproduced or utilised in any form or by any electronic, mechanical, or other means, now known or hereafter invented, including photocopying and recording, or in any information storage or retrieval system, without permission in writing from the publishers. British Library Cataloguing in Publication Data A catalogue record for this book is available from the British Library Library of Congress Cataloging in Publication Data Bender, David A. Introduction to nutrition and metabolism/David A. Bender.–3rd ed. p. cm. Includes bibliographical references and index. 1. Nutrition. 2. Metabolism. I. Title. QP141 .B38 2002 612.3′9–dc21 2001052290 ISBN 0-203-36154-7 Master e-book ISBN ISBN 0-203-37411-8 (Adobe eReader Format) ISBN 0–415–25798–0 (hbk) ISBN 0–415–25799–9 (pbk) Contents Preface viii Additional resources x chapter 1 Why eat? 1 1.1 The need for energy 2 1.2 Metabolic fuels 4 1.3 Hunger and appetite 6 chapter 2Enzymes and metabolic pathways 15 2.1 Chemical reactions: breaking and -
VITAMIN K SUBSTANCES 1. Exposure Data
VITAMIN K SUBSTANCES Vitamin K comprises a group of substances, which are widespread in nature and are an essential co-factor in humans in the synthesis of several proteins that play a role in haemostasis and others that may be important in calcium homeostasis. The K vitamins all contain the 2-methyl-1,4-naphthoquinone (menadione) moiety, and the various naturally occurring forms differ in the alkyl substituent at the 3-position. Phylloquinone (vitamin K1) is 2-methyl-3-phytyl-1,4-naphthoquinone and is widely found in higher plants, including green leafy vegetables, and in green and blue algae. The menaquinones (formerly vitamin K2) have polyisoprenyl substituents at the 3-position and are produced by bacteria. The compound menadione (formerly vitamin K3) lacks an alkyl group at the 3-position but can be alkylated in vivo in some species. Several synthetic water-soluble derivatives, such as the sodium diphosphate ester of menadiol and the addition product of menadione with sodium bisulfite, also have commercial applications (National Research Council, 1989; Gennaro, 1995; Weber & Rüttimann, 1996). 1. Exposure Data 1.1 Chemical and physical data 1.1.1 Nomenclature, structural and molecular formulae and relative molecular masses Vitamin K (generic) Chem. Abstr. Serv. Reg. No.: 12001-79-5 Chem. Abstr. Name: Vitamin K Vitamin K1 (generic) Chem. Abstr. Serv. Reg. No.: 11104-38-4 Chem. Abstr. Name: Vitamin K1 Phylloquinone Chem. Abstr. Serv. Reg. No.: 84-80-0 Deleted CAS Reg. Nos.: 10485-69-5; 15973-57-6; 50926-17-5 –417– 418 IARC MONOGRAPHS