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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Sex Differences in Visual Perception in Melanochromis Auratus
SEX DIFFERENCES IN VISUAL PERCEPTION IN MELANOCHROMIS AURATUS Margaret Coniam A Thesis Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE August 2014 Committee: Moira van Staaden, Advisor Sheryl Coombs Robert Huber ii ABSTRACT Moira van Staaden, Advisor The cichlid fishes of Lake Malawi have undergone explosive speciation in the past 1.5 million years with the production of between 500-1000 species of cichlid 1. Sensory factors such as visual, olfactory and acoustic signals are all believed to play a role in this differentiation process. Vision is by far the most studied and best understood of the sensory modalities, but there is a distinct gap between our understanding of the molecular components of the cichlid visual system and whether, or how exactly, these impact the behavior displayed. Recent research has shown that the type of visual pigment expressed in the retina differs by sex in Melanochromis auratus 11. We aimed to determine whether such differences are reflected in sex- dependent variation in hue sensitivity and hue discrimination in M. auratus. To test this, we used a modified optomotor discrimination task to assess (i) differences in the luminance curves for each sex and (ii) sex differences in the minimum angular distance of adjacent hues required to elicit recognition as two distinct stimuli. Our results indicate significant variation in the minimum brightness required for the perception of hues across the color spectrum, but no sex- specific difference in detection thresholds. Similarly, results for the minimum angular distance required to discriminate between adjacent hues suggest there are areas of the color spectrum to which vision is tuned, but again no difference between the sexes. -
Executive Summary
WHEN GUN POINT JOINS THE TRADE Executive Summary When Gun Point Joins The Trade (Ketika Moncong Senjata Ikut Berniaga) Military Business Involvement in Bojonegoro, Boven Digoel dan Poso RESEARCH TEAM COMMISSION FOR DISAPPEARANCES AND VICTIMS OF VIOLENCE (KONTRAS) 2004 1 EXECUTIVE SUMMARY KontraS Jl. Borobudur No. 14 Menteng Jakarta 10320 Indonesia Phone : +62 21 392 6983 fax : +62 21 392 6821 email : [email protected] web : www.kontras.org 2 Commission for Disappearances and Victims of Violence (KONTRAS) WHEN GUN POINT JOINS THE TRADE Kontras At A Glance KONTRAS, which was formed on 20 March 1998, is a task force established by a number of civil society organizations and community leaders. This task force was originally named KIP-HAM in 1996. As a commission whose work was to monitor Human Rights issues, KIP-HAM received many reports and inputs from the community, both victims’ community and others who dared to express their aspiration regarding human rights issues that took place in their regions. In the beginning, KIP-HAM only received reports through phone communication but the public gradually grew brave in delivering their reports directly to KIP-HAM secretariat. In several meetings with victims’ community, there was an idea to form an entity that deals specifically with cases of forced disappearances as a response to continuous violent practices that had claimed many victims. The idea was thrown in by one of the victims’ mothers named Ibu Tuti Koto. It was finally agreed that a commission would be established to deal with cases of disappearances and victims of violence under the name of Kontras. -
The Role of Expansion Movement in the Establishment of New Region In
Article Komunitas: International Journal of The Role of Expansion Indonesian Society and Culture 9(1) (2017): 115-135 DOI:10.15294/komunitas.v9i1.7710 Movement in the © 2017 Semarang State University, Indonesia p-ISSN 2086 - 5465 | e-ISSN 2460-7320 Establishment of New Region http://journal.unnes.ac.id/nju/index.php/komunitas UNNES JOURNALS in Indonesia: A Study of Parigi Moutong Regency Muhammad Nur Alamsyah 1, Valina Singka Subekti2 1Universitas Tadulako, Palu, Sulawesi Tengah, Indonesia 2Universitas Indonesia, Jakarta, Indonesia Received: 2 November 2016; Accepted: 24 February 2017; Published: 30 March 2017 Abstract The study explains the dimension of the structure of resource mobilization in the political movement of new region establishment in Indonesia. The establishment of new regions has been seen only in the utilization of formal structures. In fact, the involvement of non-formal organizations also contributes to the importance and determines a region expansion. The study employed a qualitative approach with the support of pri - mary and secondary data related to the establishment of Parigi Moutong Regency. The data was obtained through in-depth interviews with the group figures of the expansion. The secondary data was obtained from mass media and government agencies as well as personal documentation. The theory used was the dimen- sion of the resource mobilization structure of the political opportunity structure (POST) theory. The study reveals that the success of the expansion movement in Parigi Moutong Regency for their structure resource mobilization by civil society organizations or non-formal to formal institutional build up pressure by using lobbying based on personal, professional and primordial networks. -
Micromorphological Observation of the Anterior Gut of Sulawesi Medaka Fish (Oryzias Celebensis)
Int.J.Curr.Microbiol.App.Sci (2018) 7(2): 2942-2946 International Journal of Current Microbiology and Applied Sciences ISSN: 2319-7706 Volume 7 Number 02 (2018) Journal homepage: http://www.ijcmas.com Original Research Article https://doi.org/10.20546/ijcmas.2018.702.357 Micromorphological Observation of the Anterior Gut of Sulawesi Medaka Fish (Oryzias celebensis) Dwi Kesuma Sari1*, Irma Andriani2 and Khusnul Yaqin3 1Study Program of Veterinary Medicine, Faculty of Medicine, Hasanuddin University, Jl. Perintis kemerdekaan Km. 10, Makassar, South Sulawesi, Indonesia 2Pstudy Program of Biology, Faculty of Mathematics and Natural Sciences, Hasanuddin University, Indonesia 3Faculty of Marine Sciences and Fisheries, Hasanuddin University, Indonesia *Corresponding author ABSTRACT K e yw or ds The use of medaka fish as a candidate animal model has been started which has similarities Sulawesi medaka with the Zebra fish that was developed as an animal model. Sulawesi medaka fish (Oryzias fish, Anterior gut, celebensis) is a type of medaka fish that are endemic in the region of South Sulawesi. This Buccal cavity, research aims to observe the histology of anterior gut of Sulawesi medaka fish. Oesophagus Histological study on the anterior gut of Sulawesi medaka fish using buccal cavity and oesophagus organs. Histological observation showed that the mouth and buccal cavity are Article Info shared by the respiratory and digestive systems. Also in Sulawesi medaka fish we found Accepted: the lining of the buccal cavity consists of mucoid epithelium on a thick basement 26 January 2018 membrane with numerous goblet cells. In general the structure of the anterior gut system in Available Online: Sulawesi medaka fish similar with Zebra fish as well as other Teleostei fish. -
GESCHÄFTSBERICHT 2019 GEFÖRDRT VOM FORSCHUNGS Museum GESCHÄFTSBERICHT 2019 KOENIG
GESCHÄFTSBERICHT 2019 GEFÖRDRT VOM FORSCHUNGS museum GESCHÄFTSBERICHT 2019 KOENIG INHALT VORWORT 3 1. STAND UND ENTWICKLUNG DER STIFTUNG 5 1.1 Zusammenfassung für das Jahr 2019 5 1.2 Profil des ZFMK als Forschungsmuseum 8 1.3 Organisation 9 1.4 Strukturentwicklung 11 1.5 Sammlungen und Datenbestände 11 1.5.1 Zentrum für Taxonomie und Evolutionsforschung (zte) 11 1.5.2 Biobank 19 1.6 Wissenschaft und Forschung 20 1.6.1 Zentrum für Taxonomie und Evolutionsforschung (zte) 20 1.6.2 Zentrum für Molekulare Biodiversitätsforschung (zmb) 24 1.6.3 Zentrum für Biodiversitätsmonitoring (zbm) 28 1.6.4 Biohistoricum 30 1.7 Veröffentlichungen, Vorträge, Tagungen 31 1.7.1 Vorträge, Tagungen 31 1.7.2 Veröffentlichungen 32 1.8 Drittmitteleinwerbungen 37 1.9 Öffentlichkeitsarbeit und Museumspädagogik 39 1.10 Ausstellungen 40 1.11 Beschäftigte 42 1.12 Gleichstellung 44 1.13 Nachwuchsförderung 45 1.14 Beschaffung 46 1.15 Interne Steuerung 48 1.16 Finanzielle Entwicklung 49 2. JAHRESABSCHLUSS 2019 51 2.1 Bilanz 51 2.2 Gewinn- und -Verlustrechnung 52 2.3 Anhang 52 2.4 Anlagespiegel 53 2.5 Prüfungsergebnis des Abschlussprüfers 53 3. ORGANE UND GREMIEN 53 3.1 Stiftungsrat 54 3.2 Direktorin / Direktor 55 3.3 Wissenschaftlicher Beirat 55 4. ANLAGEN 57 4.1 Publikationen 57 4.2 Wissenschaftlicher Nachwuchs 63 4.3 Vorträge 65 4.4 Drittmittelprojekte 69 4.5 Mitglieder der Organe der Stiftung 71 4.6 Organigramm 72 3 FORSCHUNGS museum GESCHÄFTSBERICHT 2019 KOENIG Verwendete Abkürzungen Abk. Erläuterung 1KITE 1,000 Insect Transcriptome Evolution (project) AKG Alexander-Koenig-Gesellschaft e.V. -
Iktiofauna Air Tawar Beberapa Danau Dan Sungai Inletnya Di Provinsi Sulawesi Tengah, Indonesia
©Journal of Aquatropica Asia p-issn: 2407-3601 Volume 4, Nomor 1, Tahun 2019 Jurusan Akuakultur, Universitas Bangka Belitung IKTIOFAUNA AIR TAWAR BEBERAPA DANAU DAN SUNGAI INLETNYA DI PROVINSI SULAWESI TENGAH, INDONESIA FREHSWATER FISH OF LAKES AND IT’S INLET RIVERS IN SULAWESI TENGAH PROVINCE, INDONESIA Muh. Herjayanto1,5,6,., Abdul Gani2,6, Yeldi S. Adel3, Novian Suhendra4,6 1Program Studi Ilmu Perikanan, Fakultas Pertanian, Universitas Sultan Ageng Tirtayasa, Serang, Indonesia 2Program Studi Akuakultur, Fakultas Perikanan, Universitas Muhammadiyah Luwuk, Banggai, Indonesia 3Program Studi Teknologi Penangkapan Ikan, Sekolah Tinggi Perikanan dan Kelautan Palu, Indonesia 4Stasiun Karantina Ikan Pengendalian Mutu dan Keamanan Hasil Perikanan Palu, Indonesia 5Masyarakat Iktiologi Indonesia 6Tim Ekspedisi Riset Akuatika (ERA) Indonesia .email penulis korespondensi: [email protected] Abstrak Provinsi Sulawesi Tengah (Sulteng) berada dalam kawasan Wallacea memiliki ikan endemik di danau serta sungai inletnya. Selain itu, pemerintah juga telah melakukan introduksi ikan ke perairan umum untuk kesejahteraan masyarakat. Sejauh ini catatan iktiofauna air tawar di Sulteng belum terangkum dengan baik. Oleh karena itu, kami menelusuri hasil penelitian terdahulu tentang jenis ikan di 11 danau dan sungai inletnya di Sulteng. Danau (D) tersebut yaitu D. Bolano (Bolanosau), D. Lindu, D. Poso, D. Rano, D. Rano Kodi dan D. Rano Bae, Danau Sibili, D. Talaga (Dampelas), D. Kalimpa’a (Tambing), D. Tiu dan D. Wanga. Selain itu, kami juga melakukan pengamatan ikan di tujuh danau antara tahun 2012-2019. Penangkapan ikan menggunakan jaring lempar, jaring pantai, pukat insang dan pancing. Hasil rangkuman dan pengamatan menunjukkan bahwa terdapat 18 famili dan 27 genus ikan di 11 danau dan sungai inletnya di Sulteng. -
Collection of Freshwater and Coastal Fishes from Sulawesi Tenggara, Indonesia [Koleksi Ikan-Ikan Air Tawar Dan Pantai Di Sulawesi Tenggara] Lynne R
Jurnal Iktiologi Indonesia, 14(1):1-19 Collection of freshwater and coastal fishes from Sulawesi Tenggara, Indonesia [Koleksi ikan-ikan air tawar dan pantai di Sulawesi Tenggara] Lynne R. Parenti1,, Renny K. Hadiaty2, Daniel N. Lumbantobing1,3 1National Museum of Natural History, Smithsonian Institution PO Box 37012, NHB MRC 159, Washington, D.C. 20013-7012 USA 2Museum Zoologicum Bogoriense, Division of Zoology, Research Center for Biology Indonesian Institute of Sciences (LIPI) Jln. Raya Jakarta-Bogor Km 46, Cibinong 16911, Indonesia 3Florida Museum of Natural History Museum Road and Newell Drive, Gainesville, FL 32611-7800. Received: October 9, 2013; Accepted: January 21, 2014 Abstract We report 69 fish species in 34 teleost families nearly all collected during a preliminary survey of the Sungai Pohara and coastal localities in Sulawesi Tenggara, including Muna Island, in June 2010. Of these species, nine are introduced or exotic and another is questionably native. The family Gobiidae is the most diverse taxon, represented by 14 native species. Atherinomorph fishes of the family Adrianichthyidae are represented in the province by four endemic species and two others that are widespread, all in the genus Oryzias. This fish fauna contrasts sharply with the riverine ichthyo- fauna of the adjacent Sulawesi Tenggara islands of Buton and Kabaena in which there are reportedly no ricefishes and few endemics. New species are being described by the field team and collaborators. Our ultimate goal is to discover, describe, highlight, understand and encourage the conservation of the native freshwater and coastal fish biota of Sula- wesi. Keywords: endemic fishes, introduced species, Oryzias, Sungai Pohara Abstrak Kami melaporkan hasil survei pendahuluan di Sungai Pohara dan perairan pantai di Sulawesi Tenggara, termasuk Pulau Muna. -
Genetic Resources for Aquaculture: Status and Trends
109 Genetic resources for aquaculture: status and trends Roger S.V. Pullin 7A Legaspi Park View, 134 Legaspi Street, Consultant, Philippines 1. SUMMARY Aquaculture, the farming of aquatic plants and animals, has grown consistently since 1970, when it provided only 3.9 percent of world fish supply. In 2004, global production of farmed fish (mainly crustaceans, molluscs and finfish) was over 45 million tonnes, comprising about 32 percent of total world fish supply, while the total production of farmed seaweeds for food and extraction of chemicals, was about 13.9 million t. Aquaculture also provides increasing proportions of the world’s supply of ornamental aquatic organisms. Over 90 percent of aquaculture takes place in developing countries, where it has high importance for poor people in terms of nutrition and livelihoods and where further responsible development of aquaculture, integrated with other natural resource use, has high potential for future growth. Based upon statistics submitted to FAO by its member States, about 84 percent of farmed fish production comes from Asia, with 67 percent coming from the Peoples’ Republic of China. However, aquaculture is increasing in importance in all developing regions and is expected to provide about 50 percent of world food fish supply within the next 20 years. The future of aquaculture will depend in large measure upon the effective management of the genetic resources for farmed aquatic plants (PGR) and farmed fish (FiGR), as well as those for the organisms that provide their food and ecosystem services. Fish farms are agroecosystems and aquatic genetic resources for aquaculture on farms are part of agrobiodiversity. -
Beloniformes, Adrianichthyidae) Endemic to Sulawesi, Indonesia( Digest 要約 )
Phylogenetic and taxonomic studies of the medaka Title (Beloniformes, Adrianichthyidae) endemic to Sulawesi, Indonesia( Digest_要約 ) Author(s) Mokodongan, Daniel Frikli Citation Issue Date 2016-09 URL http://hdl.handle.net/20.500.12000/35389 Rights Abstract Although the family Adrianichthyidae is broadly distributed throughout East and Southeast Asia, 19 endemic species are distributed in Sulawesi, which is an island in Wallacea. However, it remains unclear how Adrianichthyidae biodiversity hotspot was shaped. Moreover, seven of the 19 endemic species were described within this decade, suggesting that we still do not know the full picture of the biodiversity of this family in this small island ofthe Indo-Australian Archipelago. First, I reconstructed molecular phylogenies for the Sulawesi adrianichthyids and estimated the divergence times of major lineages to infer the detailed history of their origin and subsequent intra-island diversification. The mitochondrial and nuclear phylogenies revealed that Sulawesi adrianichthyids are monophyletic, which indicates that they diverged from a single common ancestor. Species in the earliest branching lineages are currently distributed in the central and southeastern parts of Sulawesi, indicating that the common ancestor colonized Sula Spur, which is a large promontory that projects from the Australian continental margin, from Asia by tectonic dispersal c.a. 20 Mya. The first diversification event on Sulawesi, the split of the genus Adrianichthys, occurred c.a. 16 Mya, and resulted in the nesting of the genus Adrianichthys within Oryzias. Strong geographic structure was evident in the phylogeny; many species in the lineages branching off early are riverine and widely distributed in the southeastern and southwestern arms of Sulawesi, which suggests that oversea dispersal between tectonic subdivisions of this island during the late Miocene (7-5 Mya) contributed to the distributions and diversification of the early branching lineages. -
Wsn 133 (2019) 145-157 Eissn 2392-2192
Available online at www.worldscientificnews.com WSN 133 (2019) 145-157 EISSN 2392-2192 Effect of concentration of Osteochilus hasselti (Valenciennes, 1842) skin gelatin on ice cream's preferences level Fadhiilah*, Junianto, Zahidah Hasan, Emma Rochima Fisheries and Marine Sciences Faculty, Padjadjaran University, Jatinangor 45363, West Java, Indonesia *E-mail address: [email protected] ABSTRACT This research aims to determine the concentration of the use of nilem skin gelatin in order to obtain the most preferred ice cream. The treatment is the concentration of the use of nilem skin gelatin 0.2%, 0.3%, 0.4%, and CMC 0.4% (control) of the total mixture of ice cream ingredients (full cream milk powder, skim, stabilizer, emulsifier, and water) with 4 repetitions. The parameters observed were the level of preference for the color, aroma, texture, and taste of ice cream. The most preferred ice cream is obtained by using nilem skin gelatin at a concentration of 0.4%. Keywords: Javakarp, gelatin, skin, nilem fish, ice cream, preference level, Osteochilus hasselti, Osteochilus vittatus 1. INTRODUCTION Nilem is a family of Cyprinidea freshwater fish, and can be seen in Figure 1. Cultivation of nilem fish is almost abandoned because its utilization is not optimal [25]. The part of nilem fish which is eggs is generally used to make caviar so that there is fish skin waste. To maximize the utilization of nilem fish, it is necessary to diversify through processing nilem skin gelatin. Nilem fish's skin is one of the potential wastes to be the basic