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TAIR Accession No. Uniprot Accession No. At1g01090 O24457 At1g02090

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TAIR Uniprot accession no. accession no. At1g01090 O24457 At1g02090 Q94JU3 At1g02370 Q9FZ24 At1g02500 P23686 At1g02690 Q9FWY7 At1g02930 P42760 At1g03140 Q9SA55 At1g03220 Q9ZVS4 At1g03280 Q9ZVS9 At1g04190 O64488 At1g04480 O22686 At1g04810 Q9MAT0 At1g04850 Q9MAT3 At1g04870 Q9MAT5 At1g05350 O23034 At1g06130 Q8LDW8 At1g06220 Q9LNC5 At1g06290 P0CZ23 At1g06400 P28185 At1g06410 Q9LMI0 At1g06680 Q42029 At1g07750 Q9SIA7 At1g09270 O49602 At1g09290 Q9ZPZ6 At1g09430 O80526 At1g09490 O80532 At1g09620 O04485 At1g09640 O04487 At1g09740 O04495 At1g09780 O04499 At1g10200 Q9SY62 At1g10490 Q9XIK4 At1g10840 Q9C5Z2 At1g10940 P43291 At1g11580 Q1JPL7 At1g11840 O65398 At1g11910 Q38934 At1g12000 Q8W4M5 At1g12230 Q9FWX0 At1g12270 Q9LNB6 At1g12770 Q8W4E1 At1g12840 C0SUV0 At1g14810 Q9LQU9 At1g14900 Q43386 At1g15270 Q9XI42 At1g15440 Q9XI24 At1g15480 Q9XI21 At1g15930 Q9S9P1 At1g16470 O23708 At1g17290 F4I7I0 At1g17580 Q39160 At1g18070 Q9LM39 At1g18450 Q84M92 AT1G18540 Q8L9N4 At1g19570 Q9FWR4 At1g19880 Q9FXI6 At1g20110 Q8LD23 At1g20200 Q9LNU4 At1g20620 Q42547 At1g20960 Q9SYP1 At1g21720 Q9XI05 At1g21880 Q93ZH0 At1g22300 P48347 At1g22410 Q9SK84 At1g22730 O64378 At1g22840 O23138 At1g23230 O49295 At1g23820 Q9ZUB3 At1g23900 Q84K16 At1g24180 Q8H1Y0 At1g24280 Q8L743 At1g24360 P33207 At1g24510 O04450 At1g24793 P0C2G7 At1g25490 Q38845 At1g26110 Q9C604 At1g26170 Q9C662 At1g26550 Q9FE18 At1g26830 Q9ZVH4 At1g26880 Q42351 At1g27450 P31166 At1g27650 Q9S709 At1g28280 Q9FZA1 At1g29030 Q9LP33 At1g29041 Q9LP34 At1g29150 Q9LP45 At1g29880 O23627 At1g29990 Q9C8S0 At1g30630 Q9SA78 At1g31070 Q5PNR7 At1g31180 Q5XF32 At1g31230 Q9SA18 At1g31812 P57752 At1g31860 O82768 At1g35160 P46077 At1g35720 Q9SYT0 At1g36160 Q38970 At1g36180 F4I1L3 At1g37130 P11035 At1g42440 Q9SHN6 At1g42970 Q0WL92 At1g43860 Q9MAR2 At1g45000 Q9MAK9 At1g45332 Q9C641 At1g47200 Q9C500 At1g47830 Q84WL9 At1g49240 Q0WL95 At1g49670 Q39174 At1g49760 Q9FXA2 At1g49950 Q9LPL9 At1g50200 P36428 At1g50240 Q2QB51 At1g50480 Q9SPK5 At1g50500 Q9LPS3 At1g50670 Q9LPT6 At1g50920 Q9SY72 At1g50940 Q9C6I6 At1g51160 Q9SYB8 At1g51380 Q9C8J1 At1g51390 Q9C8J2 At1g51760 O04373 At1g52340 Q9C826 At1g52380 Q9C829 At1g52670 Q9SSR9 At1g52730 Q9SSS7 At1g52760 Q9C942 At1g52980 Q9C923 At1g53280 Q9MAH3 At1g53750 Q9SSB5 At1g54100 Q9SYG7 At1g54460 Q9ASW8 At1g54580 P25701 At1g55860 Q8GY23 At1g55890 Q9LG23 At1g56110 Q9SGT7 At1g56340 O04151 At1g56450 Q7DLR9 At1g58080 Q9S762 At1g59900 P52901 At1g59990 Q944S1 At1g60070 Q9ZUI6 At1g60170 Q8RXN6 At1g60420 O80763 At1g60620 Q39216 At1g60710 Q93ZN2 At1g60770 O22714 At1g60850 Q39215 At1g61870 Q8LE47 At1g62020 Q94A40 At1g62750 Q9SI75 At1g63000 Q9LQ04 At1g63160 Q9CAM7 At1g63660 Q9CAD1 At1g63940 P92947 At1g64520 Q9SGW3 At1g64740 P11139 At1g64790 F4I894 At1g65220 Q9S9K2 At1g65930 Q9SRZ6 At1g65980 Q9XEX2 At1g66240 Q9C7U6 At1g66530 O23246 AT1G67120 Q9ZW94 At1g67930 Q9C9V9 At1g69510 Q9FMI6 At1g69830 Q9CAR6 At1g70320 Q8H0T4 At1g71270 Q94KD3 At1g71410 Q9C9H8 At1g71820 Q9M9G4 At1g72370 Q08682 At1g73430 Q8L744 At1g73940 Q9C9B5 At1g74000 P92976 At1g74030 Q9C9C4 At1g74040 Q9LPR4 At1g74050 Q9C9C5 At1g74230 Q9C909 At1g74470 Q9CA67 At1g74690 Q8L4D8 At1g74910 Q9SSG7 At1g74960 Q9C9P4 At1g75270 Q9FRL8 At1g75990 Q9LQR8 At1g76010 Q9LQR7 At1g76030 P11574 At1g76180 P42763 At1g76550 Q9C9K3 At1g77120 P06525 At1g77470 Q9CAQ8 AT1G78050 Q9SGZ6 At1g78300 Q01525 At1g78380 Q9ZRW8 At1g78900 Q0WLF6 At1g79050 Q39199 At1g79230 O64530 At1g79340 O64517 At1g79350 O64516 At1g79690 Q8L831 At1g79930 Q9S7C0 At1g79990 Q9CAA0 At1g80270 Q9C977 At1g80360 Q9C969 At1g80410 Q9M8L0 At1g80480 Q9M8L6 At1g80560 P93832 At1g80600 Q9M8M7 At1g80670 Q38942 At1g80720 Q9SAI6 At2g01140 Q9ZU52 At2g01690 Q9ZU97 At2g02090 Q9ZUL5 At2g02380 Q9ZVQ4 At2g02560 Q8L5Y6 At2g03270 Q9FNX9 At2g04030 O23638 At2g04400 P49572 At2g04550 Q84JU4 At2g05140 O80937 At2g05210 Q6Q835 At2g05710 Q9SIB9 At2g05840 O81147 At2g05990 O04942 At2g07696 Q6IDL0 At2g07750 O80792 At2g12240 Q9ZUQ1 At2g14120 Q8LFT2 At2g15290 Q9SHU7 At2g15430 Q39211 At2g15620 Q39161 At2g15790 Q08A80 At2g15860 Q8L4R9 At2g16060 Q0WSU5 At2g16440 Q9SIV8 At2g16570 Q38999 At2g16600 Q38900 At2g16950 Q8H2D6 At2g17265 Q9XEE0 At2g17380 Q8LEZ8 At2g17390 Q29Q26 At2g17420 Q39242 At2g17560 Q42344 At2g17630 Q9SHP0 At2g17670 Q84J71 At2g17850 F4IPI4 At2g17930 Q9SL52 At2g17980 Q9SL48 At2g18510 Q9ZU66 At2g19480 Q9ZUP3 At2g19490 Q9ZUP2 At2g19940 Q93Z70 At2g20420 O82662 At2g20580 Q9SIV2 At2g20800 Q9SKT7 At2g21330 Q9SJU4 At2g21390 Q9SJT9 At2g21580 Q9SIK2 At2g21660 Q03250 At2g22125 F4IIM1 At2g22230 Q9SIE3 At2g22250 E9L7A7 At2g22420 Q9SJZ2 At2g22480 Q8VYN6 At2g23350 O22173 At2g23460 O80462 At2g24050 O82233 At2g24200 P30184 At2g24310 Q9ZQ36 At2g24765 P40940 At2g25060 Q9SK27 At2g25110 Q93ZE8 At2g25140 Q8VYJ7 At2g27020 O23715 At2g27040 Q9ZVD5 At2g27600 Q9ZNT0 At2g27730 Q9ZUX4 At2g27860 Q9ZUY6 At2g28450 Q8L7S3 At2g29450 P46421 At2g29570 Q9ZW35 At2g30050 O64740 At2g30110 P93028 AT2G30200 Q8L5U2 At2g30490 B1GV39 At2g30870 P42761 At2g30970 P46643 At2g31370 B9DGB1 At2g31660 F4IRR2 At2g31810 Q9SKB9 At2g32520 O80889 At2g32730 O48844 At2g33150 Q56WD9 At2g33210 Q8L7B5 At2g34040 O22957 At2g34350 O80784 At2g34470 O64700 At2g35010 O64764 At2g35040 O64767 At2g35390 Q42581 At2g35630 Q94FN2 At2g36250 O82533 At2g36880 Q9SJL8 At2g38770 Q9ZVJ8 At2g39020 Q9ZV06 At2g39260 F4IUX6 At2g39270 Q84JF7 At2g39390 O80626 At2g39730 P10896 At2g39795 Q8W487 At2g39810 Q84JU6 At2g39990 O04202 At2g40010 O04204 At2g40290 Q9XEF6 At2g40590 P49206 At2g40660 Q93VB0 At2g40730 F4II29 At2g41040 Q0WPT7 At2g41220 Q9T0P4 At2g41530 Q8LAS8 At2g42230 O48530 At2g42500 Q07100 At2g42580 Q9SIN1 At2g42590 Q96299 At2g42600 Q5GM68 At2g42680 Q9SJI8 At2g42710 Q9SJI5 At2g42780 Q9SJH8 At2g42790 Q0WUX6 At2g42810 Q84XU2 At2g42910 Q680A5 At2g43090 Q9ZW85 At2g43140 Q9ZW81 At2g43360 Q24JJ0 At2g43710 O22832 At2g43770 O22826 At2g44050 O80575 At2g44060 O80576 At2g44120 F4IT48 At2g44350 P20115 At2g44450 O64879 At2g44530 O64888 At2g45300 P05466 At2g45440 Q0WSN6 At2g45990 O82790 At2g46140 O82355 At2g46280 Q38884 At2g46520 Q9ZPY7 At2g47430 O22267 At2g47470 O22263 At2g47510 P93033 At2g47610 P49692 At2g47640 O22247 At3g01790 Q9SGJ2 At3g01910 Q0WWA1 At3g02260 Q9SRU2 At3g02520 Q96300 At3g02540 Q84L31 At3g02760 F4IYF8 At3g02770 Q67Y35 At3g03590 Q9SS61 At3g03780 Q9SRV5 At3g04600 Q9SR15 At3g05040 Q0WP44 At3g05530 Q9SEI2 At3g06670 Q9M7X4 At3g06720 Q96321 At3g06810 Q8RWZ3 At3g06860 Q9ZPI5 At3g07300 Q9SFW0 At3g07770 Q9S7E7 At3g07980 O81809 At3g08030 Q9SFB1 At3g08580 P31167 At3g08590 Q9M9K1 At3g08943 Q0WML1 At3g09090 Q9SS78 At3g09500 Q9SF53 At3g09810 Q8LG77 At3g09820 Q9SF85 At3g09840 P54609 At3g10050 Q9ZSS6 At3g10350 A1L4Y1 At3g10380 Q9SS49 At3g10670 Q9CAF5 At3g10690 Q9CAF6 At3g10920 O81235 At3g10940 Q9SRK5 At3g11130 Q0WNJ6 At3g11270 Q9C774 At3g11400 Q9SSJ0 At3g11630 Q96291 At3g11710 Q9ZPI1 At3g11780 Q9SF20 AT3G11964 Q9LHM6 At3g12050 Q9LHL7 At3g12210 Q9C7D5 At3g12290 Q9LHH7 At3g12500 P19171 At3g12700 Q9LTW4 At3g12780 Q9LD57 At3g12915 F4JB05 At3g13110 Q39218 At3g13150 Q9LK58 At3g13290 Q9LTT9 At3g13300 Q9LTT8 At3g13860 Q93ZM7 At3g15010 Q9LKA4 At3g15590 Q9LRP6 At3g15660 B9DGX1 At3g15980 Q8L828 At3g16360 Q9LU15 At3g16480 O04308 At3g16640 P31265 At3g16840 Q93Y39 At3g16980 Q6NLH0 At3g16990 Q9ASY9 At3g17205 Q8RWB8 At3g17240 Q9M5K2 At3g18130 Q9LV28 At3g18190 Q9LV21 At3g18280 Q9LJQ3 At3g18580 Q9LII1 At3g19170 Q9LJL3 At3g19420 Q9LT75 At3g19760 Q94A52 At3g19980 Q9LHE7 At3g20050 P28769 At3g20330 P49077 At3g20630 Q8L6Y1 At3g20800 Q8RWV5 At3g21060 Q9LJC6 At3g21175 Q8GXL7 At3g21540 Q9LVF2 At3g22110 O81148 At3g22200 Q9LIE2 At3g22320 O81098 At3g22330 Q9LUW5 At3g22850 Q9LIL3 At3g22890 Q9LIK9 At3g22950 Q9LIK1 At3g22960 Q9LIK0 At3g23940 Q9LIR4 At3g24090 Q9LIP9 At3g24100 Q9LRN7 At3g24430 Q9LK00 At3g25110 Q42561 At3g25150 Q9LSG2 At3g25230 Q38931 At3g25545 Q9LSU9 At3g25800 Q38950 At3g25860 Q9SQI8 At3g26030 Q9ZQY6 At3g26340 Q9LIP2 At3g26618 P35614 At3g26650 P25856 At3g27380 Q8LBZ7 At3g27430 O23710 At3g27740 O24447 At3g27830 P36210 At3g29350 Q9ZNV8 At3g30841 Q9M0P1 At3g42050 Q9LX65 At3g42170 Q9M2N5 At3g43190 Q9LXL5 At3g44300 Q1LYZ1 At3g44310 P32961 At3g44340 Q9M291 AT3G45090 Q9M1V0 At3g45190 Q9M1U0 At3g45770 Q8LCU7 At3g45960 B9DH60 At3g45970 Q9LZT4 At3g46060 P28186 At3g46530 Q19G12 At3g46940 Q9STG6 At3g47520 Q9SN86 At3g48170 Q9STS1 At3g48560 P17597 At3g48730 Q42522 At3g48930 P16181 At3g48990 Q9SMT7 At3g49240 Q9M3A8 At3g49870 Q9M2X1 At3g51000 Q9SD45 At3g51160 P93031 At3g51260 P30186 At3g51840 Q96329 At3g51890 F4J5M9 At3g52090 Q38859 At3g52200 Q0WQF7 At3g52880 Q0WUV6 At3g52930 Q9LF98 At3g52960 Q949U7 At3g52990 Q9LF93 At3g53110 Q93ZG7 At3g53180 F4J9A0 At3g54110 O81845 At3g54470 Q42586 At3g54640 Q42529 At3g54960 Q8VX13 At3g55410 Q9M2T8 At3g55590 Q9M2S0 At3g55610 P54888 At3g55620 Q9M060 At3g56070 Q38867 At3g56090 Q0WWR6 At3g56130 Q9LYM8 At3g56150 O49160 At3g56240 O82089 At3g56460 Q9LXZ4 At3g57290 Q9M2L8 At3g57560 Q9SCL7 At3g57610 Q96529 At3g57660 Q9SVY0 At3g58140 Q94K73 At3g58510 Q8LA13 At3g58660 Q9LXT5 At3g59020 Q9LYT4 At3g59760 Q43725 At3g59890 Q8LB01 At3g60210 Q9M1C2 At3g60450 Q9M214 At3g60660 Q9LZZ7 At3g60740 Q9LZY9 At3g60750 Q9LZY8 At3g60820 P42742 At3g60860 Q9LZX8 At3g61140 P45432 At3g61240 Q9M2E0 At3g61440 Q9S757 At3g61650 P38557 At3g61820 Q9M356 At3g61850 B4F7P4 At3g62010 Q9M264 At3g62120 Q9M1R2 At3g62310 Q9LZQ9 At3g62560 Q8VYP7 At3g62940 Q9LYC7 At3g63250 Q9M1W4 At3g63460 Q9LY69 At4g00100 P59224 At4g01400 Q8LDU5 At4g01900 Q9ZST4 At4g01990 Q93WC5 At4g02030 Q0WQ75 At4g02350 O81298 At4g02450 O81288 At4g02480 Q8RX24 At4g02570 Q94AH6 At4g02840 Q9SY09 At4g03090 Q9ZTA5 At4g04320 Q7Y1Z8 At4g04670 Q8W4K1 At4g04910 Q9M0Y8 At4g04940 Q9ZPH3 At4g05320 A6XI99 At4g05530 Q9S9W2 At4g09000 P42643 At4g10320 O82613 At4g10610 Q38915 At4g10750 O22581 At4g10790 O82483 At4g11010
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  • In Silico Characterization of the Citrate Synthase Family in Mycobacterium Tuberculosis

    In Silico Characterization of the Citrate Synthase Family in Mycobacterium Tuberculosis

    Turkish Journal of Biochemistry – Türk Biyokimya Dergisi 2016; 41(2): 118–126 Bioinformatics Research Article – 66743 Sezer Okay In silico characterization of the citrate synthase family in Mycobacterium tuberculosis Mycobacterium tuberculosis’te sitrat sentaz ailesinin in silico karakterizasyonu DOI 10.1515/tjb-2016-0019 Conclusion: This comprehensive bioinformatics analysis Received November 13, 2015; accepted January 4, 2016 of CS family in MTB has a contribution to the knowledge of the genetics and physiology of this pathogen. Abstract: Objective: Mycobacterium tuberculosis (MTB) is an obligate aerobe bacterial pathogen. Here, the citrate Keywords: Aerobic respiration, citrate synthase, Myco- synthase (CS) family, an important component of aerobic bacterium tuberculosis, pathogenicity respiration, was investigated in MTB. Methods: MTB genome was analyzed in silico to reveal Özet: Amaç: Mycobacterium tuberculosis (MTB) zorunlu the members of CS family. The nucleotide and amino acid aerop olan bakteriyel bir patojendir. Burada, oksijenli sequences were retrieved from the NCBI database, and solunumun önemli bir bileşeni olan sitrat sentaz (SS) searched for the similarity using the NCBI BLAST tool. ailesi MTB’de incelenmiştir. Sequence alignment and phylogenetic analysis were per- formed using MEGA6. The physicochemical parameters, Metod: SS ailesinin üyelerini belirlemek için MTB genomu cellular localization, HMM profiles, motif structure, 3D in silico analiz edildi. Nükleotit ve aminoasit dizileri NCBI modeling, and the interactions of the proteins were ana- veri tabanından alındı ve benzerlikleri NCBI BLAST ara- lyzed using GPMAW, PSORTb, Pfam and SMART, MEME, cıyla tarandı. Dizi hizalama ve filogenetik analiz MEGA6 Phyre2, and STRING databases, respectively. kullanılarak gerçekleştirildi. Fizikokimyasal parametre- ler, hücresel lokalizasyon, HMM profilleri, motif yapısı, üç Results: The members of CS family in MTB were identified boyutlu modelleme ve diğer proteinlerle etkileşimler sıra- as CitA, GltA2, and PrpC.
  • An Integrated Approach of Proteomics and Computational Genetic Modification Effectiveness Analysis to Uncover the Mechanism of Flood Tolerance in Soybeans

    An Integrated Approach of Proteomics and Computational Genetic Modification Effectiveness Analysis to Uncover the Mechanism of Flood Tolerance in Soybeans

    International Journal of Molecular Sciences Article An Integrated Approach of Proteomics and Computational Genetic Modification Effectiveness Analysis to Uncover the Mechanism of Flood Tolerance in Soybeans Xin Wang 1,2, Katsumi Sakata 3,* and Setsuko Komatsu 1,2,* 1 Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan; [email protected] 2 National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan 3 Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan * Correspondence: [email protected] (K.S.); [email protected] (S.K.) Received: 9 March 2018; Accepted: 22 April 2018; Published: 26 April 2018 Abstract: Flooding negatively affects the growth of soybeans. Recently, omic approaches have been used to study abiotic stress responses in plants. To explore flood-tolerant genes in soybeans, an integrated approach of proteomics and computational genetic modification effectiveness analysis was applied to the soybean (Glycine max L. (Merrill)). Flood-tolerant mutant and abscisic acid (ABA)-treated soybean plants were used as the flood-tolerant materials. Among the primary metabolism, glycolysis, fermentation, and tricarboxylic acid cycle were markedly affected under flooding. Fifteen proteins, which were related to the affected processes, displayed similar protein profiles in the mutant and ABA-treated soybean plants. Protein levels of glyceraldehyde-3-phosphate dehydrogenase (GAPDH), aconitase 1, and 2-oxoglutarate dehydrogenase were higher in flood-tolerant materials than in wild-type soybean plants under flood conditions. These three proteins were positioned in each of the three enzyme groups revealed by our computational genetic modification effectiveness analysis, and the three proteins configured a candidate set of genes to promote flood tolerance.
  • The Apricot (Prunus Armeniaca L.) Genome Elucidates Rosaceae

    The Apricot (Prunus Armeniaca L.) Genome Elucidates Rosaceae

    Jiang et al. Horticulture Research (2019) 6:128 Horticulture Research https://doi.org/10.1038/s41438-019-0215-6 www.nature.com/hortres ARTICLE Open Access The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesis Fengchao Jiang1,2,JunhuanZhang1,2,SenWang3,LiYang1,2, Yingfeng Luo3, Shenghan Gao3, Meiling Zhang1,2, Shuangyang Wu3, Songnian Hu3, Haoyuan Sun1,2 and Yuzhu Wang1,2 Abstract Apricots, scientifically known as Prunus armeniaca L, are drupes that resemble and are closely related to peaches or plums. As one of the top consumed fruits, apricots are widely grown worldwide except in Antarctica. A high-quality reference genome for apricot is still unavailable, which has become a handicap that has dramatically limited the elucidation of the associations of phenotypes with the genetic background, evolutionary diversity, and population diversity in apricot. DNA from P. armeniaca was used to generate a standard, size-selected library with an average DNA fragment size of ~20 kb. The library was run on Sequel SMRT Cells, generating a total of 16.54 Gb of PacBio subreads (N50 = 13.55 kb). The high-quality P. armeniaca reference genome presented here was assembled using long-read single-molecule sequencing at approximately 70× coverage and 171× Illumina reads (40.46 Gb), combined with a genetic map for chromosome scaffolding. The assembled genome size was 221.9 Mb, with a contig NG50 size of 1.02 Mb. Scaffolds covering 92.88% of the assembled genome were anchored on eight chromosomes. Benchmarking Universal Single-Copy Orthologs analysis showed 98.0% complete genes. We predicted 30,436 protein-coding genes, 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; and 38.28% of the genome was predicted to be repetitive.
  • 1A59 Lichtarge Lab 2006

    1A59 Lichtarge Lab 2006

    Pages 1–8 1a59 Evolutionary trace report by report maker August 8, 2010 4.3.3 DSSP 7 4.3.4 HSSP 7 4.3.5 LaTex 7 4.3.6 Muscle 7 4.3.7 Pymol 8 4.4 Note about ET Viewer 8 4.5 Citing this work 8 4.6 About report maker 8 4.7 Attachments 8 1 INTRODUCTION From the original Protein Data Bank entry (PDB id 1a59): Title: Cold-active citrate synthase Compound: Mol id: 1; molecule: citrate synthase; chain: a; engineered: yes Organism, scientific name: Antarctic Bacterium Ds2-3r; 1a59 contains a single unique chain 1a59A (377 residues long). 2 CHAIN 1A59A 2.1 O34002 overview From SwissProt, id O34002, 100% identical to 1a59A: CONTENTS Description: Citrate synthase (EC 2.3.3.1). 1 Introduction 1 Organism, scientific name: Antarctic bacterium DS2-3R. Taxonomy: Bacteria. 2 Chain 1a59A 1 Catalytic activity: Acetyl-CoA + H(2)O + oxaloacetate = citrate + 2.1 O34002 overview 1 CoA. 2.2 Multiple sequence alignment for 1a59A 1 Biophysicochemical properties: 2.3 Residue ranking in 1a59A 1 Temperature dependence: Optimum temperature is 31 degrees Cel- 2.4 Top ranking residues in 1a59A and their position on sius. Cold-active. Is rapidly inactivated at 45 degrees Celsius, and the structure 2 shows significant activity at 10 degrees Celsius and below; 2.4.1 Clustering of residues at 25% coverage. 2 Pathway: Tricarboxylic acid cycle. 2.4.2 Overlap with known functional surfaces at Subunit: Homodimer. 25% coverage. 2 Miscellaneous: Citrate synthase is found in nearly all cells capable of oxidative metabolism.
  • 1471-2164-6-174-S4.PDF (299.1Kb)

    1471-2164-6-174-S4.PDF (299.1Kb)

    Sup_Table_2. Comparison of the whole genomes in Fig. 3A. Segment 1- Conserved in Bm, Bp, and Bt to Bp to Bt Gene Description % length % identity % length % identity BMA0001 chromosomal replication initiator protein DnaA 100 99 100 96 BMA0002 DNA polymerase III, beta subunit 100 100 100 99 BMA0003 DNA gyrase, B subunit 100 100 100 99 BMA0006 carboxymuconolactone decarboxylase family protein 100 98 100 99 BMA0010 hypothetical protein 100 99 100 92 BMA0011 hypothetical protein 100 100 100 91 BMA0014.1 hypothetical protein 100 99 96 94 BMA0018 hypothetical protein 100 99 100 95 BMA0019 FHA domain protein 100 100 100 94 BMA0020 protein kinase domain protein 100 99 100 90 BMA0023 conserved hypothetical protein 100 99 100 90 BMA0024 aldolase, class II 100 98 100 91 BMA0027 polysaccharide biosynthesis family protein 100 100 100 96 BMA0028 glycosyl transferase, group 1 family protein 100 99 100 94 BMA0029 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 100 99 100 92 BMA0030 ElaA family protein 100 99 100 90 BMA0032 glycosyl transferase, group 1 family protein 100 99 100 93 BMA0037 sigma-54 dependent transcriptional regulator 100 99 100 97 BMA0039 beta-mannosidase-related protein 100 99 100 91 BMA0040 conserved hypothetical protein 100 100 100 94 BMA0041 conserved hypothetical protein 100 99 100 95 BMA0042 acyl-CoA dehydrogenase domain protein 100 99 100 96 BMA0043 acyl carrier protein, putative 100 100 100 95 BMA0044 conserved hypothetical protein 100 99 100 96 BMA0045 conserved hypothetical protein 100 100 100 98 BMA0046
  • IDENTIFICAÇÃO DE Micrornas ENVOLVIDOS NO DESENVOLVIMENTO DE SEMENTES DE GLYCINE MAX (L.)

    IDENTIFICAÇÃO DE Micrornas ENVOLVIDOS NO DESENVOLVIMENTO DE SEMENTES DE GLYCINE MAX (L.)

    IDENTIFICAÇÃO DE microRNAs ENVOLVIDOS NO DESENVOLVIMENTO DE SEMENTES DE GLYCINE MAX (L.) MERRILL PAULA MACHADO DE ARAÚJO UNIVERSIDADE ESTADUAL DO NORTE FLUMINENSE DARCY RIBEIRO Campos dos Goytacazes, RJ Fevereiro de 2020 IDENTIFICAÇÃO DE microRNAs ENVOLVIDOS NO DESENVOLVIMENTO DE SEMENTES DE GLYCINE MAX (L.) MERRILL PAULA MACHADO DE ARAÚJO Dissertação apresentada ao Centro de Biociências e Biotecnologia da Universidade Estadual do Norte Fluminense Darcy Ribeiro, como parte das exigências para obtenção do título de Mestre em Biociências e Biotecnologia. Orientadora: Profa. Dra. Clícia Grativol Gaspar de Matos UNIVERSIDADE ESTADUAL DO NORTE FLUMINENSE DARCY RIBEIRO Campos dos Goytacazes, RJ Fevereiro de 2020 ii IDENTIFICAÇÃO DE microRNAsENVOLVIDOS NO DESENVOLVIMENTO DE SEMENTES DE GLYCINE MAX (L.) MERRILL PAULA MACHADO DE ARAÚJO Dissertação apresentada ao Centro de Biociências e Biotecnologia da Universidade Estadual do Norte Fluminense Darcy Ribeiro, como parte das exigências para obtenção do título de Mestre em Biociências e Biotecnologia. Aprovada em de fevereiro de 2020. Comissão Examinadora: Douglas Silva omtngles (DSc., Biotecnologia)— UNESP Claudete ta-Catarina DSc., Biotecnologia)— UENF Kátia Valevski Sales Femandes (PhD, Bioquímica e Biologia Molecularde Plantas)- UENF Clícia GrativolGaspar de atos (DSc., Química Biológica)- UENF (Orientadora) iii FICHA CATALOGRÁFICA UENF - Bibliotecas Elaborada com os dados fornecidos pela autora. A663 Araújo, Paula Machado de. Identificação de microRNAs envolvidos no desenvolvimento de sementes de Glycine max (L.) Merrill. / Paula Machado de Araújo. - Campos dos Goytacazes, RJ, 2020. 72 f. : il. Inclui bibliografia. Dissertação (Mestrado em Biociências e Biotecnologia) - Universidade Estadual do Norte Fluminense Darcy Ribeiro, Centro de Biociências e Biotecnologia, 2020. Orientadora: Clicia Grativol Gaspar. 1. microRNAs. 2. embriogênese de sementes.
  • 1Cts Lichtarge Lab 2006

    1Cts Lichtarge Lab 2006

    Pages 1–7 1cts Evolutionary trace report by report maker July 3, 2009 4.3.3 DSSP 6 4.3.4 HSSP 6 4.3.5 LaTex 6 4.3.6 Muscle 6 4.3.7 Pymol 6 4.4 Note about ET Viewer 7 4.5 Citing this work 7 4.6 About report maker 7 4.7 Attachments 7 1 INTRODUCTION From the original Protein Data Bank entry (PDB id 1cts): Title: Crystallographic refinement and atomic models of two diffe- rent forms of citrate synthase at 2.7 and 1.7 angstroms resolution Compound: Mol id: 1; molecule: citrate synthase; chain: a; ec: 4.1.3.7; engineered: yes Organism, scientific name: Sus Scrofa 1cts contains a single unique chain 1ctsA (437 residues long). 2 CHAIN 1CTSA 2.1 P00889 overview CONTENTS From SwissProt, id P00889, 100% identical to 1ctsA: 1 Introduction 1 Description: Citrate synthase, mitochondrial precursor (EC 2.3.3.1). Organism, scientific name: Sus scrofa (Pig). 2 Chain 1ctsA 1 Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; 2.1 P00889 overview 1 Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; 2.2 Multiple sequence alignment for 1ctsA 1 Suina; Suidae; Sus. 2.3 Residue ranking in 1ctsA 1 Catalytic activity: Acetyl-CoA + H(2)O + oxaloacetate = citrate + 2.4 Top ranking residues in 1ctsA and their position on CoA. the structure 1 Pathway: Tricarboxylic acid cycle. 2.4.1 Clustering of residues at 25% coverage. 1 Subunit: Homodimer. 2.4.2 Overlap with known functional surfaces at Subcellular location: Mitochondrial matrix. 25% coverage. 2 Miscellaneous: Citrate synthase is found in nearly all cells capable of oxidative metabolism.