Type Studies in Polyporaceae 27. Species Described by P. Ch
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Diversity of Polyporales in the Malay Peninsular and the Application of Ganoderma Australe (Fr.) Pat
DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS MOHAMAD HASNUL BIN BOLHASSAN FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2013 DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS MOHAMAD HASNUL BIN BOLHASSAN THESIS SUBMITTED IN FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY INSTITUTE OF BIOLOGICAL SCIENCES FACULTY OF SCIENCE UNIVERSITY OF MALAYA KUALA LUMPUR 2013 UNIVERSITI MALAYA ORIGINAL LITERARY WORK DECLARATION Name of Candidate: MOHAMAD HASNUL BIN BOLHASSAN (I.C No: 830416-13-5439) Registration/Matric No: SHC080030 Name of Degree: DOCTOR OF PHILOSOPHY Title of Project Paper/Research Report/Disertation/Thesis (“this Work”): DIVERSITY OF POLYPORALES IN THE MALAY PENINSULAR AND THE APPLICATION OF GANODERMA AUSTRALE (FR.) PAT. IN BIOPULPING OF EMPTY FRUIT BUNCHES OF ELAEIS GUINEENSIS. Field of Study: MUSHROOM DIVERSITY AND BIOTECHNOLOGY I do solemnly and sincerely declare that: 1) I am the sole author/writer of this work; 2) This Work is original; 3) Any use of any work in which copyright exists was done by way of fair dealing and for permitted purposes and any excerpt or extract from, or reference to or reproduction of any copyright work has been disclosed expressly and sufficiently and the title of the Work and its authorship have been acknowledge in this Work; 4) I do not have any actual -
Book on Specific Groups of Fungi Code General Ainsworth & Bisby’S Dictionary of the Fungi
Book on Specific Groups of Fungi code General Ainsworth & Bisby’s Dictionary of the Fungi. Cab International dictfu Color Atlas of Basidiomycetes. Gustav Fischer farbat Ascomycetes Fungi of Switzerland. Volume 1: Ascomycetes. Verlag Mykologia, Luzern. asz Illustrated Genera of Ascomycetes. APS Press. illus1 Illustrated Genera of Ascomycetes. Volume II. APS Press. illus2 Combined Keys to Illustrated Genera of Ascomycetes I & II comill Mushrooms of Idaho and the Pacific Northwest. Vol 1. Discomycetes. University of Idaho Press. nwdisc Nordic Macromycetes. Vol. 1. Ascomycetes. Nordsvamp, Copenhagen. nord1 Boletes Fungi of Switzerland. Volume 3: Boletes and agarics, 1st part: Strobilomycetaceae, Boletaceae, Paxillaceae, bolsz Gomphidiaceae, Hygrophoraceae, Tricholomtaceae, Polyporaceae (lamellate). Verlag Mykologia, Nordic Macromycetes. Vol. 2. Poyporales, Boletales, Agaricales, Russulales. Nordsvamp, Copenhagen. normac North American Boletes. A Color Guide to the Fleshy Pored Mushrooms. Syracuse University Press, Syracuse. norbol Corticioid The Corticiaceae of North Europe Vol 1: Introduction and Keys. Fungiflora cort1 The Corticiaceae of North Europe Vol 3: Coronicium-Hyphoderma, . Fungiflora cort3 The Corticiaceae of North Europe Vol 8: Phlebiella,Thanatephorus-Ypsilonidlum, . Fungiflora cort8 The Lachnocladiaceae and Coniophoraceae of North Europe. Fungiflora lach Cantharellus, Cantharelloid, and Gomphoid fungi British Fungus Flora: Vol. 8: Cantharellaceae, Gomphaceae, and amyloid-spores and xeruloid members of cangom Tricholomataceae -
Distribution of Methionine Sulfoxide Reductases in Fungi and Conservation of the Free- 2 Methionine-R-Sulfoxide Reductase in Multicellular Eukaryotes
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Distribution of methionine sulfoxide reductases in fungi and conservation of the free- 2 methionine-R-sulfoxide reductase in multicellular eukaryotes 3 4 Hayat Hage1, Marie-Noëlle Rosso1, Lionel Tarrago1,* 5 6 From: 1Biodiversité et Biotechnologie Fongiques, UMR1163, INRAE, Aix Marseille Université, 7 Marseille, France. 8 *Correspondence: Lionel Tarrago ([email protected]) 9 10 Running title: Methionine sulfoxide reductases in fungi 11 12 Keywords: fungi, genome, horizontal gene transfer, methionine sulfoxide, methionine sulfoxide 13 reductase, protein oxidation, thiol oxidoreductase. 14 15 Highlights: 16 • Free and protein-bound methionine can be oxidized into methionine sulfoxide (MetO). 17 • Methionine sulfoxide reductases (Msr) reduce MetO in most organisms. 18 • Sequence characterization and phylogenomics revealed strong conservation of Msr in fungi. 19 • fRMsr is widely conserved in unicellular and multicellular fungi. 20 • Some msr genes were acquired from bacteria via horizontal gene transfers. 21 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.02.26.433065; this version posted February 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. -
DPR Journal 2016 Corrected Final.Pmd
Bul. Dept. Pl. Res. No. 38 (A Scientific Publication) Government of Nepal Ministry of Forests and Soil Conservation Department of Plant Resources Thapathali, Kathmandu, Nepal 2016 ISSN 1995 - 8579 Bulletin of Department of Plant Resources No. 38 PLANT RESOURCES Government of Nepal Ministry of Forests and Soil Conservation Department of Plant Resources Thapathali, Kathmandu, Nepal 2016 Advisory Board Mr. Rajdev Prasad Yadav Ms. Sushma Upadhyaya Mr. Sanjeev Kumar Rai Managing Editor Sudhita Basukala Editorial Board Prof. Dr. Dharma Raj Dangol Dr. Nirmala Joshi Ms. Keshari Maiya Rajkarnikar Ms. Jyoti Joshi Bhatta Ms. Usha Tandukar Ms. Shiwani Khadgi Mr. Laxman Jha Ms. Ribita Tamrakar No. of Copies: 500 Cover Photo: Hypericum cordifolium and Bistorta milletioides (Dr. Keshab Raj Rajbhandari) Silene helleboriflora (Ganga Datt Bhatt), Potentilla makaluensis (Dr. Hiroshi Ikeda) Date of Publication: April 2016 © All rights reserved Department of Plant Resources (DPR) Thapathali, Kathmandu, Nepal Tel: 977-1-4251160, 4251161, 4268246 E-mail: [email protected] Citation: Name of the author, year of publication. Title of the paper, Bul. Dept. Pl. Res. N. 38, N. of pages, Department of Plant Resources, Kathmandu, Nepal. ISSN: 1995-8579 Published By: Mr. B.K. Khakurel Publicity and Documentation Section Dr. K.R. Bhattarai Department of Plant Resources (DPR), Kathmandu,Ms. N. Nepal. Joshi Dr. M.N. Subedi Reviewers: Dr. Anjana Singh Ms. Jyoti Joshi Bhatt Prof. Dr. Ram Prashad Chaudhary Mr. Baidhya Nath Mahato Dr. Keshab Raj Rajbhandari Ms. Rose Shrestha Dr. Bijaya Pant Dr. Krishna Kumar Shrestha Ms. Shushma Upadhyaya Dr. Bharat Babu Shrestha Dr. Mahesh Kumar Adhikari Dr. Sundar Man Shrestha Dr. -
Pests and Diseases of Coffee in East Africa
Pests and Diseases of Coffee in Eastern Africa: A Technical and Advisory Manual compiled & edited by Mike A. Rutherford CABI UK Centre (Ascot) and Noah Phiri CABI Africa Regional Centre (Nairobi) Acknowledgements The authors would like to thank all those who contributed towards the preparation of this manual, in terms of provision of information, photographic material and advice. Gratitude is also extended to the United Kingdom Department for International Development (DFID) for providing financial report through the Renewable Natural Resources Research Strategy Crop Protection Programme (RNRRS CPP). Copyright statement © Copyright CAB International (2006) Extracts of this publication may be freely reproduced and distributed on a non-commercial basis for teaching and training purposes only, providing that the source is clearly acknowledged as: CAB International (2006) Pests and diseases of coffee in eastern Africa: a technical and advisory manual. CAB International, Wallingford, UK Compiled & edited by Mike Rutherford and Noah Phiri The copyright works may not be used for any other purpose without the express written consent of CAB International (trading as CABI), and such notice shall be placed on all copies distributed by whatever means. This publication is an output from the Crop Protection Programme of the UK Department for International Development (DFID), for the benefit of developing countries. The views expressed are not necessarily those of DFID. 2 CONTENTS Page no. Part 1 Introduction 4 Part 2 Coffee Pests 7 Coffee Berry Borer -
Molecular Cloning and Optimization for High Level Expression of Cold-Adapted Serine Protease from Antarctic Yeast Glaciozyma Antarctica PI12
Hindawi Publishing Corporation Enzyme Research Volume 2014, Article ID 197938, 20 pages http://dx.doi.org/10.1155/2014/197938 Research Article Molecular Cloning and Optimization for High Level Expression of Cold-Adapted Serine Protease from Antarctic Yeast Glaciozyma antarctica PI12 Norsyuhada Alias,1 Mu’adz Ahmad Mazian,1 Abu Bakar Salleh,1 Mahiran Basri,2 and Raja Noor Zaliha Raja Abd. Rahman1 1 Enzyme and Microbial Technology Research Centre, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia (UPM), 43400 Serdang, Selangor, Malaysia 2 EnzymeandMicrobialTechnologyResearchCentre,FacultyofScience,UniversitiPutraMalaysia(UPM),43400Serdang, Selangor, Malaysia Correspondence should be addressed to Raja Noor Zaliha Raja Abd. Rahman; [email protected] Received 4 March 2014; Revised 6 May 2014; Accepted 14 May 2014; Published 30 June 2014 Academic Editor: Raffaele Porta Copyright © 2014 Norsyuhada Alias et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Psychrophilic basidiomycete yeast, Glaciozyma antarctica strain PI12, was shown to be a protease-producer. Isolation of the PI12 protease gene from genomic and mRNA sequences allowed determination of 19 exons and 18 introns. Full-length cDNA of PI12 protease gene was amplified by rapid amplification of cDNA ends (RACE) strategy with an open reading frame (ORF) of 2892 bp, coded for 963 amino acids. PI12 protease showed low homology with the subtilisin-like protease from fungus Rhodosporidium toruloides (42% identity) and no homology to other psychrophilic proteases. The gene encoding mature PI12 protease was cloned into Pichia pastoris expression vector, pPIC9, and positioned under the induction of methanol-alcohol oxidase (AOX)promoter. -
Decrypting the Polyporus Dictyopus Complex: Recovery of Atroporus Ryvarden and Segregation of Neodictyopus Gen
RESEARCH ARTICLE Decrypting the Polyporus dictyopus complex: Recovery of Atroporus Ryvarden and segregation of Neodictyopus gen. nov. (Polyporales, Basidiomyocta) Melissa Palacio1☯*, Gerardo Lucio Robledo2☯*, Mateus Arduvino Reck1, Emanuel Grassi3, AristoÂteles Go es-Neto4, Elisandro Ricardo Drechsler-Santos1* a1111111111 1 Programa de PoÂs-GraduacËão em Biologia de Fungos, Algas e Plantas, Departamento de BotaÃnica, Universidade Federal de Santa Catarina, FlorianoÂpolis, Santa Catarina, Brasil, 2 Instituto Multidisciplinario de a1111111111 BiologõÂa Vegetal, Universidad Nacional de CoÂrdoba, CoÂrdoba, Argentina, 3 Instituto Misionero de a1111111111 Biodiversidad (IMiBio), Puerto Iguazu - Misiones±Argentina, 4 Molecular and Computational Biology of Fungi a1111111111 Laboratory, Department of Microbiology, Institute of Biological Sciences, Federal University of Minas Gerais, a1111111111 Belo Horizonte, Minas Gerais, Brazil ☯ These authors contributed equally to this work. * [email protected] (MP); [email protected] (GR); [email protected] (ERD) OPEN ACCESS Citation: Palacio M, Robledo GL, Reck MA, Grassi Abstract E, GoÂes-Neto A, Drechsler-Santos ER (2017) Polyporus dictyopus, with a large number of heterotypic synonyms, has been traditionally Decrypting the Polyporus dictyopus complex: Recovery of Atroporus Ryvarden and segregation considered a species complex, characterized by wide morphological variation and geo- of Neodictyopus gen. nov. (Polyporales, graphic distribution. Thus, neotropical specimens previously identified as P. dictyopus from Basidiomyocta). PLoS ONE 12(10): e0186183. Amazonia, Cerrado and Atlantic Forest biomes were studied based on detailed macro- and https://doi.org/10.1371/journal.pone.0186183 micromorphological examination and phylogenetic analyses, using distinct ribosomal and Editor: Erika Kothe, Friedrich Schiller University, protein-coding genomic regions: the nuclear ribosomal internal transcribed spacer (nrITS), GERMANY nuclear ribosomal large subunit (nrLSU), and RNA polymerase II second subunit (RPB2). -
Relationships Between Wood-Inhabiting Fungal Species
Silva Fennica 45(5) research articles SILVA FENNICA www.metla.fi/silvafennica · ISSN 0037-5330 The Finnish Society of Forest Science · The Finnish Forest Research Institute Relationships between Wood-Inhabiting Fungal Species Richness and Habitat Variables in Old-Growth Forest Stands in the Pallas-Yllästunturi National Park, Northern Boreal Finland Inari Ylläsjärvi, Håkan Berglund and Timo Kuuluvainen Ylläsjärvi, I., Berglund, H. & Kuuluvainen, T. 2011. Relationships between wood-inhabiting fungal species richness and habitat variables in old-growth forest stands in the Pallas-Yllästunturi National Park, northern boreal Finland. Silva Fennica 45(5): 995–1013. Indicators for biodiversity are needed for efficient prioritization of forests selected for conservation. We analyzed the relationships between 86 wood-inhabiting fungal (polypore) species richness and 35 habitat variables in 81 northern boreal old-growth forest stands in Finland. Species richness and the number of red-listed species were analyzed separately using generalized linear models. Most species were infrequent in the studied landscape and no species was encountered in all stands. The species richness increased with 1) the volume of coarse woody debris (CWD), 2) the mean DBH of CWD and 3) the basal area of living trees. The number of red-listed species increased along the same gradients, but the effect of basal area was not significant. Polypore species richness was significantly lower on western slopes than on flat topography. On average, species richness was higher on northern and eastern slopes than on western and southern slopes. The results suggest that a combination of habitat variables used as indicators may be useful in selecting forest stands to be set aside for polypore species conservation. -
Basidiomycota)
Mycol Progress DOI 10.1007/s11557-016-1210-z ORIGINAL ARTICLE Leifiporia rhizomorpha gen. et sp. nov. and L. eucalypti comb. nov. in Polyporaceae (Basidiomycota) Chang-Lin Zhao1 & Fang Wu1 & Yu-Cheng Dai1 Received: 21 March 2016 /Revised: 10 June 2016 /Accepted: 14 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract A new poroid wood-inhabiting fungal genus, Keywords Phylogenetic analysis . Polypores . Taxonomy . Leifiporia, is proposed, based on morphological and molecular Wood-rotting fungi evidence, which is typified by L. rhizomorpha sp. nov. The genus is characterized by an annual growth habit, resupinate basidiocarps with white to cream pore surface, a dimitic hyphal Introduction system with generative hyphae bearing clamp connections and branching mostly at right angles, skeletal hyphae present in the Polypores are a very important group of wood-inhabiting fungi subiculum only and distinctly thinner than generative hyphae, which have been extensively studied Among them, the IKI–,CB–, and ellipsoid, hyaline, thin-walled, smooth, IKI–, Polyporaceae is a diverse group of Polyporales, including spe- CB– basidiospores. Sequences of ITS and LSU nrRNA gene cies having annual to perennial, resupinate, pileate and stipitate regions of the studied samples were generated, and phyloge- basidiocarps, a monomitic to dimitic or trimitic hyphal structure netic analyses were performed with maximum likelihood, max- with simple septa or clamp connections on generative hyphae, imum parsimony and Bayesian inference methods. The phylo- and thin- to thick-walled, smooth to ornamented, cyanophilous genetic analysis based on molecular data of ITS + nLSU se- to acyanophilous basidiospores (Ryvarden and Johansen 1980; quences showed that Leifiporia belonged to the core Gilbertson and Ryvarden 1986, 1987;Dai2012; Ryvarden and polyporoid clade and was closely related to Diplomitoporus Melo 2014). -
New Records of Polypores from Iran, with a Checklist of Polypores for Gilan Province
CZECH MYCOLOGY 68(2): 139–148, SEPTEMBER 27, 2016 (ONLINE VERSION, ISSN 1805-1421) New records of polypores from Iran, with a checklist of polypores for Gilan Province 1 2 MOHAMMAD AMOOPOUR ,MASOOMEH GHOBAD-NEJHAD *, 1 SEYED AKBAR KHODAPARAST 1 Department of Plant Protection, Faculty of Agricultural Sciences, University of Gilan, P.O. Box 41635-1314, Rasht 4188958643, Iran. 2 Department of Biotechnology, Iranian Research Organization for Science and Technology (IROST), P.O. Box 3353-5111, Tehran 3353136846, Iran; [email protected] *corresponding author Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): New records of polypores from Iran, with a checklist of polypores for Gilan Province. – Czech Mycol. 68(2): 139–148. As a result of a survey of poroid basidiomycetes in Gilan Province, Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleucus, Polyporus udus,andTyromyces kmetii are newly reported from Iran, and the following seven species are reported as new to this province: Coriolopsis gallica, Fomitiporia punctata, Hapalopilus nidulans, Inonotus cuticularis, Oligo- porus hibernicus, Phylloporia ribis,andPolyporus tuberaster. An updated checklist of polypores for Gilan Province is provided. Altogether, 66 polypores are known from Gilan up to now. Key words: fungi, hyrcanian forests, poroid basidiomycetes. Article history: received 28 July 2016, revised 13 September 2016, accepted 14 September 2016, published online 27 September 2016. Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): Nové nálezy chorošů pro Írán a checklist chorošů provincie Gilan. – Czech Mycol. 68(2): 139–148. Jako výsledek systematického výzkumu chorošotvarých hub v provincii Gilan jsou publikovány nové druhy pro Írán: Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleu- cus, Polyporus udus a Tyromyces kmetii. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
Resupinate Polypores (Basidiomycotina) Newly Recorded from Taiwan
WuBot. Bull. Polypores Acad. Sin. newly (1996) recorded 37: 151-158 from Taiwan 151 Resupinate polypores (Basidiomycotina) newly recorded from Taiwan Sheng-Hua Wu Department of Botany, National Museum of Natural Science, Taichung, Taiwan 40419, Republic of China (Received November 29, 1995; Accepted February 28, 1996) Abstract. Eight resupinate polypores are reported from Taiwan for the first time, viz. Antrodia xantha, Megasporoporia setulosa, Oxyporus cervinogilvus, Pachykytospora papyracea, Perenniporia medullapanis, P. tephropora, Phellinus ferreus and Wrightoporia avellanea. Descriptions and microscopic line drawings are provided for the eight species. Sexuality, cultural characters, and nuclear behaviors are described for Megasporoporia setulosa and Pachykytospora papyracea. Keywords: Cultural studies; Polypores; Taiwan. Introduction bluish black color change indicating a positive reaction. The use of these media was previously described by Wu In sharing the feature of a poroid hymenial surface, (1990). polypores represent a heterogeneous assemblage in the ba- The methodology of cultural description and use of cul- sidiomycetes. The poroid configuration increases the tural codes are based on those used by Nobles (1965) with hymenial surface for the production of basidia and basid- amendments by Boidin and Lanquetin (1983). Minor iospores. The poroid hymenial surface has evolved in many modifications have been proposed by other mycologists orders among basidiomycetes, so this feature in itself can (e.g., Boidin, 1966; Lanquetin, 1973; Burdsall et al., 1978; not be considered highly valuable for systematics. Surveys Boidin et al., 1980; Burdsall and Nakasone, 1981; Hassan of the polypores in Taiwan are meager, with only a minor Kasim and David, 1983; Chamuris, 1986). The Nobles portion reported. The first reports of the Aphyllophorales cultural code modified by these mycologists was compre- of Taiwan are found in the 11 volumes of the Descriptive hensively summarized by Nakasone (1990), and is adopted Catalogue of Formosan Fungi by Sawada (19191959).