Pests and Diseases of Coffee in East Africa
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Hemileia Vastatrix) on Coffee, in Chanchamayo (Junín-Peru) 1
Agronomía Mesoamericana ISSN: 2215-3608 [email protected] Universidad de Costa Rica Costa Rica Dynamics of severity of coffee leaf rust (Hemileia vastatrix) on Coffee, in Chanchamayo (Junín-Peru) 1 Alvarado-Huamán, Leonel; Borjas-Ventura, Ricardo; Castro-Cepero, Viviana; García-Nieves, Leslie; Jiménez-Dávalos, Jorge; Julca-Otiniano, Alberto; Gómez-Pando, Luz 1 Dynamics of severity of coffee leaf rust (Hemileia vastatrix) on Coffee, in Chanchamayo (Junín-Peru) Agronomía Mesoamericana, vol. 31, no. 3, 2020 Universidad de Costa Rica, Costa Rica Available in: https://www.redalyc.org/articulo.oa?id=43764233001 DOI: https://doi.org/10.15517/am.v31i3.39726 © 2020 Agronomía Mesoamericana es desarrollada en la Universidad de Costa Rica bajo una licencia Creative Commons Atribución-NoComercial-SinDerivar 4.0 Internacional. Para más información escriba a [email protected], [email protected] This work is licensed under Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International. PDF generated from XML JATS4R by Redalyc Project academic non-profit, developed under the open access initiative Leonel Alvarado-Huamán, et al. Dynamics of severity of coffee leaf rust (Hemileia vastatrix) on C... Artículo Dynamics of severity of coffee leaf rust (Hemileia vastatrix) on Coffee, in Chanchamayo (Junín-Peru) 1 Dinámica de la severidad de la roya (Hemileia vastatrix) en café, en Chanchamayo (Junín-Perú) Leonel Alvarado-Huamán DOI: https://doi.org/10.15517/am.v31i3.39726 Universidad Nacional Agraria La Molin, Perú Redalyc: https://www.redalyc.org/articulo.oa? -
Coffee Leaf Rust Is Bad News
Coffee leaf rust is bad news Published 5 October 2020, with Stuart McCook.1 When I think of Ceylon — Sri Lanka — I think of tea, but that’s because I wasn’t alive 150 years ago. In the 1860s, coffee was the island’s most important crop. Coffee leaf rust, a fungus, put paid to the coffee, but only after a global downturn in coffee prices, and planters switched to tea. The rust, however, is not the reason the Brits drink tea rather than coffee, just one of the things I learned from Stuart McCook, who has studied the history of coffee leaf rust and what it might hold for the future. Stuart McCook: My name is Stuart McCook. I am a historian at the University of Guelph in Ontario, Canada, and my research focuses on the environmental history of coffee. Most recently I've published a book called Coffee is Not Forever which is a global history of the coffee leaf rust. Coffee leaf rust is a fungus which is native to equatorial Africa. You can think of it running from western Africa in Liberia through to the eastern part of Africa; Kenya, Ethiopia, and places like that. Jeremy: Of course, it didn't stay in Africa. When coffee went global, so, eventually, did coffee leaf rust. We'll get to that. First, though, there's something we need to get out of the way right at the outset. Like many of the diseases that attack our favourite commodities, in the short term, at least, coffee leaf rust is not a threat to your coffee. -
Type Studies in Polyporaceae 27. Species Described by P. Ch
CZECH MYCOLOGY 64(1): 13–21, JULY 2, 2012 (ONLINE VERSION, ISSN 1805-1421) Type studies in Polyporaceae 27. Species described by P. Ch. Hennings LEIF RYVARDEN Biological Institute, University of Oslo, P.O. Box 1066, Blindern, N-0316 Oslo, Norway; [email protected] Ryvarden L. (2012): Type studies in Polyporaceae 27. Species described by P. Ch. Hennings. – Czech Mycol. 64(1): 13–21. 103 polypores described by P. Ch. Hennings have been examined based on the available types. Nine- teen species are accepted, 63 species are reduced to synonymy, the types of 19 species could not be found, while two names are illegitimate. Two new combinations are proposed: Tyromyces aquosus (Henn.) Ryvarden and Diplomitoporus daedaleiformis (Henn.) Ryvarden. These two species are provided with de- scriptions, while published recent descriptions are referred to for the other 17 accepted species. Key words: Polyporaceae, types, taxonomy, nomenclature, Berlin herbarium. Ryvarden L. (2012): Typové studie chorošů 27. Druhy popsané P. Ch. Henning- sem – Czech Mycol. 64(1): 13–21. Na základě studia dostupných typů bylo revidováno 103 druhů chorošů popsaných P. Ch. Henning- sem. 19 druhů je akceptováno, 63 zařazeno do synonymiky, typy 19 druhů nebyly nalezeny, jména 2 dru- hů jsou ilegitimní. Jsou publikovány dvě nové kombinace: Tyromyces aquosus (Henn.) Ryvarden a Di- plomitoporus daedaleiformis (Henn.) Ryvarden. Tyto dva druhy jsou podrobně popsány a u 17 dalších akceptovaných druhů jsou připojeny odkazy na již publikované revize. INTRODUCTION Paul Christoph Hennings (1841–1908) was a productive mycologist, who de- scribed besides other species 109 polypores, mostly from Africa and South Amer- ica. -
6 Production Details of Organic Tea Estates in Sri Lanka
Status of organic agriculture in Sri Lanka with special emphasis on tea production systems (Camellia sinensis (L.) O. Kuntze) Dissertation zur Erlangung des Grades „Doktor der Agrarwissenschaften“ am Fachbereich Pflanzenbau der Justus-Liebig-Universität Gießen PhD Thesis Faculty of Plant Production, Justus-Liebig-University of Giessen vorgelegt von / submitted by Ute Williges OCTOBER 2004 Acknowledgement The author gratefully acknowledges the financial assistance received from the German Academic Exchange Service (Deutscher Akademischer Austauschdienst, DAAD) for the field work in Sri Lanka over a peroid of two years and the „Hochschul- und Wissenschaftsprogramm (HWP)“ for supporting the compilation of the thesis afterwards in Germany. My sincere thanks goes to my teacher Prof. Dr. J. Sauerborn whose continuous supervision and companionship accompanied me throughout this work and period of live. Further I want to thank Prof. Dr. Wegener and Prof. Dr. Leithold for their support regarding parts of the thesis and Dr. Hollenhorst for his advice carrying out the statistical analysis. My appreciation goes to Dr. Nanadasena and Dr. Mohotti for their generous provision of laboratory facilities in Sri Lanka. My special thanks goes to Mr. Ekanayeke whose thoughts have given me a good insight view in tea cultivation. I want to mention that parts of the study were carried out in co-operation with the Non Governmental Organisation Gami Seva Sevana, Galaha, Bio Foods (Pvt) Ltd., Bowalawatta, the Tea Research Institute (TRI) of Sri Lanka, Talawakele; The Tea Small Holders Development Authority (TSHDA), Regional Extension Centre, Sooriyagoda; The Post Graduate Institute of Agriculture (PGIA), Department of Soil Science, University of Peradeniya, Peradeniya and The Natural Resources Management Services (NRMS), Mahaweli Authority of Sri Lanka, Polgolla. -
Prevention and Control of Coffee Leaf Rust Handbook of Best Practices for Extension Agents and Facilitators
Prevention and control of coffee leaf rust Handbook of best practices for extension agents and facilitators Elias de Melo Virginio Filho Carlos Astorga Domian Technical series Technical manual no. 131 Prevention and control of coffee leaf rust Handbook of best practices for extension agents and facilitators Elias de Melo Virginio Filho Carlos Astorga Domian Tropical Agricultural Research and Higher Education Center (CATIE) August 2019 CATIE does not assume responsibility for the opinions and statements expressed in this document by the authors. The ideas of the authors do not necessarily reflect the point of view of the institution. Partial repro- duction of the information is authorized, as long as the source is cited. © Tropical Agricultural Research and Higher Education Center (CATIE), 2019 ISBN: 978-9977-57-704-3 Credits Authors Elias de Melo Virginio Filho Carlos Astorga Domian Reviewers: Jacques Avelino Mirna Barrios Rolando Cerda Kauê de Sousa Edition Layout: Rocío Jiménez Salas, CATIE Photography: Jacques Avelino: p.14; Shirley Orozco: p. 18, 25; Isabelle Merle: p. 19; Silvia Chaves: p. 33; Shaline Fernandes: p. 44, 83; Elias de Melo V.F.: p. 48, 58, 70, 76. Translation: Elena M. Florian Content Presentation ................................................................................5 Acknowledgments ..........................................................................6 Acronyms ...................................................................................7 Relevance and how to use the handbook ..................................................8 Section I. Disease characterization...................................................... 10 Chapter 1. Origin, epidemics and impacts of coffee leaf rust ........................... 10 1.1 Origin and distribution of coffee leaf rust in the world . 11 1.2 Epidemics and impacts of coffee rust on production and economy ........... 13 1.3 How to develop a technical session with coffee farmers ...................... 16 References .................................................................... -
Predicting the Response of Insect Pests and Diseases of Arabica Coffee to Climate Change Along an Altitudinal Gradient in Mt
Journal of Agriculture and Environmental Sciences June 2018, Vol. 7, No. 1, pp. 134-140 ISSN: 2334-2404 (Print), 2334-2412 (Online) Copyright © The Author(s). All Rights Reserved. Published by American Research Institute for Policy Development DOI: 10.15640/jaes.v7n1a14 URL: https://doi.org/10.15640/jaes.v7n1a14 Predicting the Response of Insect Pests and Diseases of Arabica Coffee to Climate Change along an Altitudinal Gradient in Mt. Elgon Region, Uganda Kagezi, H. Godfrey1*, Kucel Patrick1, Kobusinge Judith1, Olango D. Nicholas1 Nakibuule Lilian1, & Wagoire, W. William1. Abstract Recent studies have predicted an increase in temperature due to climate change which is likely to upsurge pressure from pests and diseases on Arabica coffee, Coffea arabica. Under the future climate change scenarios, elevation gradients can be used as analogues for global warming. Basing on this, we therefore determined the incidence and damage of Arabica coffee pests and diseases along an altitudinal gradient in Mt. Elgon region in order to predict their possible impact under these scenarios. Seven insect pest species were recorded - with the white coffee stem borers (WCSB) having the highest incidence of 13%. On the other hand, three diseases were recorded - with coffee leaf rust (CLR) having the highest mean severity of 1.9 on a 1-5 scale. Multiple regression analysis showed that the incidence of only WCSB decreased significantly (p=0.0169) with increasing altitude. This implies that under the future climate change scenarios, the impact of this insect pest on Arabica coffee will increase with increase in temperature. Therefore, adaptation mechanisms for climate adversaries such as inter-planting with shade trees should be advanced. -
Phylogenetic Analysis of Hemileia Vastatrix and Related Taxa Using a Genome-Scale Approach Diogo N
Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach Diogo N. Silva, Ana Vieira, Pedro Talhinhas, Helena Gil Azinheira, Maria Do Ceu Silva, Diana Fernandez, Octavio S Paulo, Sébastien Duplessis, Dora Batista To cite this version: Diogo N. Silva, Ana Vieira, Pedro Talhinhas, Helena Gil Azinheira, Maria Do Ceu Silva, et al.. Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach. 24. International Conference on Coffee Science. ASIC 2012, Nov 2012, San Jose, Costa Rica. hal- 01267895 HAL Id: hal-01267895 https://hal.archives-ouvertes.fr/hal-01267895 Submitted on 3 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach SILVA, DIOGO N.*¥, VIEIRA, ANA*, TALHINHAS, PEDRO*, AZINHEIRA, HELENA G.*, SILVA, MARIA DO CÉU*, FERNANDEZ, DIANA§, DUPLESSIS, SÉBASTIEN£, PAULO, OCTÁVIO S¥, BATISTA, DORA*. * CIFC/IICT - Centro de Investigação das Ferrugens do Cafeeiro/Instituto de Investigação Científica -
Climate-Smart Coffee in Uganda
Climate-smart coffee in Uganda Summary Uganda is Africa’s second largest coffee producer. Its 1.7 shows that, although most of Ugandan coffee production million smallholder coffee households represent 10% of can be sustained, the majority of the suitable area is in global coffee farms. The annual production of 3-4million need of substantial adaptation efforts. bags coffee accounts for 18% of the country’s annual exports. Local production systems are maladapted to future conditions and without adaptation, coffee in Uganda would About 77% of annual production is Robusta coffee likely become uneconomical with climate change in most produced in Central Uganda. Arabica is produced on the regions. However, globally coffee production systems have borders with Rwanda and Kenya. Most production is on been adapted to a wider range of climate conditions than small plots (0.25ha) that are intercropped with banana and currently observed in the country, suggesting that with other food crops. global technology transfer, especially of germplasm, Uganda may remain suitable for coffee production. Coffee production areas in Uganda have become drier and hotter over the past three decades. Annual temperatures Because of the high climate uncertainty for Uganda, we have risen across the country, potential evapotranspiration recommend a site-specific stepwise CSC pathway for increased, and the distribution of precipitation has become adaptation. Local experts developed a sequence of farm more variable. level practices, in which each step requires additional effort. This aims to make the adoption of these practices Global climate models project annual mean temperature to feasible for resource-constrained smallholders. increase by 1.7°C-1.8°C until mid-century. -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes. -
A New Morphological Arrangement of the Polyporales. I
A new morphological arrangement of the Polyporales. I. Phanerochaetineae © Ivan V. Zmitrovich, Vera F. Malysheva,* Wjacheslav A. Spirin** V.L. Komarov Botanical Institute RAS, Prof. Popov str. 2, 197376, St-Petersburg, Russia e-mail: [email protected], *[email protected], **[email protected] Zmitrovich I.V., Malysheva V.F., Spirin W.A. A new morphological arrangement of the Polypo- rales. I. Phanerochaetineae. Mycena. 2006. Vol. 6. P. 4–56. UDC 582.287.23:001.4. SUMMARY: A new taxonomic division of the suborder Phanerochaetineae of the order Polyporales is presented. The suborder covers five families, i.e. Faerberiaceae Pouzar, Fistuli- naceae Lotsy (including Jülich’s Bjerkanderaceae, Grifolaceae, Hapalopilaceae, and Meripi- laceae), Laetiporaceae Jülich (=Phaeolaceae Jülich), and Phanerochaetaceae Jülich. As a basis of the suggested subdivision, features of basidioma micromorphology are regarded, with special attention to hypha/epibasidium ratio. Some generic concepts are changed. New genera Raduliporus Spirin & Zmitr. (type Polyporus aneirinus Sommerf. : Fr.), Emmia Zmitr., Spirin & V. Malysheva (type Polyporus latemarginatus Dur. & Mont.), and Leptochaete Zmitr. & Spirin (type Thelephora sanguinea Fr. : Fr.) are described. The genus Byssomerulius Parmasto is proposed to be conserved versus Dictyonema C. Ag. The genera Abortiporus Murrill and Bjer- kandera P. Karst. are reduced to Grifola Gray. In total, 69 new combinations are proposed. The species Emmia metamorphosa (Fuckel) Spirin, Zmitr. & Malysheva (commonly known as Ceri- poria metamorphosa (Fuckel) Ryvarden & Gilb.) is reported as new to Russia. Key words: aphyllophoroid fungi, corticioid fungi, Dictyonema, Fistulinaceae, homo- basidiomycetes, Laetiporaceae, merulioid fungi, Phanerochaetaceae, phylogeny, systematics I. INTRODUCTORY NOTES There is no general agreement how to outline the limits of the forms which should be called phanerochaetoid fungi. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
Host Jumps Shaped the Diversity of Extant Rust Fungi (Pucciniales)
Research Host jumps shaped the diversity of extant rust fungi (Pucciniales) Alistair R. McTaggart1, Roger G. Shivas2, Magriet A. van der Nest3, Jolanda Roux4, Brenda D. Wingfield3 and Michael J. Wingfield1 1Department of Microbiology and Plant Pathology, Tree Protection Co-operative Programme (TPCP), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria 0028, South Africa; 2Department of Agriculture and Forestry, Queensland Plant Pathology Herbarium, GPO Box 267, Brisbane, Qld 4001, Australia; 3Department of Genetics, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private bag X20, Pretoria 0028, South Africa; 4Department of Plant Sciences, Tree Protection Co-operative Programme (TPCP), Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Private Bag X20, Pretoria 0028, South Africa Summary Author for correspondence: The aim of this study was to determine the evolutionary time line for rust fungi and date Alistair R. McTaggart key speciation events using a molecular clock. Evidence is provided that supports a contempo- Tel: +2712 420 6714 rary view for a recent origin of rust fungi, with a common ancestor on a flowering plant. Email: [email protected] Divergence times for > 20 genera of rust fungi were studied with Bayesian evolutionary Received: 8 July 2015 analyses. A relaxed molecular clock was applied to ribosomal and mitochondrial genes, cali- Accepted: 26 August 2015 brated against estimated divergence times for the hosts of rust fungi, such as Acacia (Fabaceae), angiosperms and the cupressophytes. New Phytologist (2016) 209: 1149–1158 Results showed that rust fungi shared a most recent common ancestor with a mean age doi: 10.1111/nph.13686 between 113 and 115 million yr.