New Records of Fungi from Iran
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Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Phylogeny, Morphology, and Ecology Resurrect Previously Synonymized Species of North American Stereum Sarah G
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.16.342840; this version posted October 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny, morphology, and ecology resurrect previously synonymized species of North American Stereum Sarah G. Delong-Duhon and Robin K. Bagley Department of Biology, University of Iowa, Iowa City, IA 52242 [email protected] Abstract Stereum is a globally widespread genus of basidiomycete fungi with conspicuous shelf-like fruiting bodies. Several species have been extensively studied due to their economic importance, but broader Stereum taxonomy has been stymied by pervasive morphological crypsis in the genus. Here, we provide a preliminary investigation into species boundaries among some North American Stereum. The nominal species Stereum ostrea has been referenced in field guides, textbooks, and scientific papers as a common fungus with a wide geographic range and even wider morphological variability. We use ITS sequence data of specimens from midwestern and eastern North America, alongside morphological and ecological characters, to show that Stereum ostrea is a complex of at least three reproductively isolated species. Preliminary morphological analyses show that these three species correspond to three historical taxa that were previously synonymized with S. ostrea: Stereum fasciatum, Stereum lobatum, and Stereum subtomentosum. Stereum hirsutum ITS sequences taken from GenBank suggest that other Stereum species may actually be species complexes. Future work should apply a multilocus approach and global sampling strategy to better resolve the taxonomy and evolutionary history of this important fungal genus. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Chemical Elements in Ascomycetes and Basidiomycetes
Chemical elements in Ascomycetes and Basidiomycetes The reference mushrooms as instruments for investigating bioindication and biodiversity Roberto Cenci, Luigi Cocchi, Orlando Petrini, Fabrizio Sena, Carmine Siniscalco, Luciano Vescovi Editors: R. M. Cenci and F. Sena EUR 24415 EN 2011 1 The mission of the JRC-IES is to provide scientific-technical support to the European Union’s policies for the protection and sustainable development of the European and global environment. European Commission Joint Research Centre Institute for Environment and Sustainability Via E.Fermi, 2749 I-21027 Ispra (VA) Italy Legal Notice Neither the European Commission nor any person acting on behalf of the Commission is responsible for the use which might be made of this publication. Europe Direct is a service to help you find answers to your questions about the European Union Freephone number (*): 00 800 6 7 8 9 10 11 (*) Certain mobile telephone operators do not allow access to 00 800 numbers or these calls may be billed. A great deal of additional information on the European Union is available on the Internet. It can be accessed through the Europa server http://europa.eu/ JRC Catalogue number: LB-NA-24415-EN-C Editors: R. M. Cenci and F. Sena JRC65050 EUR 24415 EN ISBN 978-92-79-20395-4 ISSN 1018-5593 doi:10.2788/22228 Luxembourg: Publications Office of the European Union Translation: Dr. Luca Umidi © European Union, 2011 Reproduction is authorised provided the source is acknowledged Printed in Italy 2 Attached to this document is a CD containing: • A PDF copy of this document • Information regarding the soil and mushroom sampling site locations • Analytical data (ca, 300,000) on total samples of soils and mushrooms analysed (ca, 10,000) • The descriptive statistics for all genera and species analysed • Maps showing the distribution of concentrations of inorganic elements in mushrooms • Maps showing the distribution of concentrations of inorganic elements in soils 3 Contact information: Address: Roberto M. -
<I>Russula Atroaeruginea</I> and <I>R. Sichuanensis</I> Spp. Nov. from Southwest China
ISSN (print) 0093-4666 © 2013. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/124.173 Volume 124, pp. 173–188 April–June 2013 Russula atroaeruginea and R. sichuanensis spp. nov. from southwest China Guo-Jie Li1,2, Qi Zhao3, Dong Zhao1, Shuang-Fen Yue1,4, Sai-Fei Li1, Hua-An Wen1a* & Xing-Zhong Liu1b* 1State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 1 Beichen West Road, Chaoyang District, Beijing 100101, China 2University of Chinese Academy of Sciences, Beijing 100049, China 3Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, Yunnan, China 4College of Life Science, Capital Normal University, Xisihuanbeilu 105, Haidian District, Beijing 100048, China * Correspondence to: a [email protected] b [email protected] Abstract — Two new species of Russula are described from southwestern China based on morphology and ITS1-5.8S-ITS2 rDNA sequence analysis. Russula atroaeruginea (sect. Griseinae) is characterized by a glabrous dark-green and radially yellowish tinged pileus, slightly yellowish context, spores ornamented by low warts linked by fine lines, and numerous pileocystidia with crystalline contents blackening in sulfovanillin. Russula sichuanensis, a semi-sequestrate taxon closely related to sect. Laricinae, forms russuloid to secotioid basidiocarps with yellowish to orange sublamellate gleba and large basidiospores with warts linked as ridges. The rDNA ITS-based phylogenetic trees fully support these new species. Key words — taxonomy, Macowanites, Russulales, Russulaceae, Basidiomycota Introduction Russula Pers. is a globally distributed genus of macrofungi with colorful fruit bodies (Bills et al. 1986, Singer 1986, Miller & Buyck 2002, Kirk et al. -
Checklist of the Species of the Genera Amanita and Limacella (Agaricomycetes) in Estonia
Folia Cryptog. Estonica, Fasc. 45: 81–85 (2009) Checklist of the species of the genera Amanita and Limacella (Agaricomycetes) in Estonia Mall Vaasma Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, 181 Riia St., 51014, Tartu, Estonia. Natural History Museum, University of Tartu, 46 Vanemuise St., 51014, Tartu, Estonia. E-mail: [email protected] Abstract: 19 species, 2 varieties and 1 form of genus Amanita and 3 species of genus Limacella (Agaricomycetes) have been recorded in Estonia. A checklist of these species with habitat, phenology and occurrence data are presented. Kokkuvõte: Kärbseseene (Amanita) ja limalooriku (Limacella) perekonna (Agaricomycetes) liikide kriitiline nimestik Eestis Eestis on kärbseseene perekonnas 19 liiki, 2 teisendit ja 1 vorm, limalooriku perekonnas on 3 liiki. Igale liigile on antud andmed tema kasvukoha, fenoloogia ja esinemissageduse kohta. The present checklist contains 19 Amanita spe- FE – Neville, Poumarat, Fungi Europaei, 2004 cies, 2 varieties and 1 form and 3 Limacella spe- Galli – Galli, 2001 cies recorded in Estonia. All the species included GBW – Krieglsteiner, 2003 have been proved by relevant exsiccata in the KL – Kalamees & Liiv, 2005 mycological herbarium TAAM of the Institute of Korh – Korhonen, 2007 Agricultural and Environmental Sciences of the Lud – Ludwig, 2000 Estonian University of Life Sciences and in the Phil – Pillips, 2006 mycological herbarium TU of the Natural History RH – Ryman & Holmåsen, 2006 Museum of the University of Tartu. According to RM – Rivista di Micologia, 2008 literary sources (Urbonas a.o. 1986) Limacella SNS – Salo, Niemelä & Salo, 2006 delicata (Fr.) Earle has also been recorded in Estonia, but the exsiccata available do not en- AMANITA Pers., Tent. -
Phd. Thesis Sana Jabeen.Pdf
ECTOMYCORRHIZAL FUNGAL COMMUNITIES ASSOCIATED WITH HIMALAYAN CEDAR FROM PAKISTAN A dissertation submitted to the University of the Punjab in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in BOTANY by SANA JABEEN DEPARTMENT OF BOTANY UNIVERSITY OF THE PUNJAB LAHORE, PAKISTAN JUNE 2016 TABLE OF CONTENTS CONTENTS PAGE NO. Summary i Dedication iii Acknowledgements iv CHAPTER 1 Introduction 1 CHAPTER 2 Literature review 5 Aims and objectives 11 CHAPTER 3 Materials and methods 12 3.1. Sampling site description 12 3.2. Sampling strategy 14 3.3. Sampling of sporocarps 14 3.4. Sampling and preservation of fruit bodies 14 3.5. Morphological studies of fruit bodies 14 3.6. Sampling of morphotypes 15 3.7. Soil sampling and analysis 15 3.8. Cleaning, morphotyping and storage of ectomycorrhizae 15 3.9. Morphological studies of ectomycorrhizae 16 3.10. Molecular studies 16 3.10.1. DNA extraction 16 3.10.2. Polymerase chain reaction (PCR) 17 3.10.3. Sequence assembly and data mining 18 3.10.4. Multiple alignments and phylogenetic analysis 18 3.11. Climatic data collection 19 3.12. Statistical analysis 19 CHAPTER 4 Results 22 4.1. Characterization of above ground ectomycorrhizal fungi 22 4.2. Identification of ectomycorrhizal host 184 4.3. Characterization of non ectomycorrhizal fruit bodies 186 4.4. Characterization of saprobic fungi found from fruit bodies 188 4.5. Characterization of below ground ectomycorrhizal fungi 189 4.6. Characterization of below ground non ectomycorrhizal fungi 193 4.7. Identification of host taxa from ectomycorrhizal morphotypes 195 4.8. -
Biodiversity and Molecular Ecology of Russula and Lactarius in Alaska Based on Soil and Sporocarp DNA Sequences
Russulales-2010 Scripta Botanica Belgica 51: 132-145 (2013) Biodiversity and molecular ecology of Russula and Lactarius in Alaska based on soil and sporocarp DNA sequences József GEML1,2 & D. Lee TAYLOR1 1 Institute of Arctic Biology, 311 Irving I Building, 902 N. Koyukuk Drive, P.O. Box 757000, University of Alaska Fairbanks, Fairbanks, AK 99775-7000, U.S.A. 2 (corresponding author address) National Herbarium of the Netherlands, Netherlands Centre for Biodiversity Naturalis, Leiden University, Einsteinweg 2, P.O. Box 9514, 2300 RA Leiden, The Netherlands [email protected] Abstract. – Although critical for the functioning of ecosystems, fungi are poorly known in high- latitude regions. This paper summarizes the results of the first genetic diversity assessments of Russula and Lactarius, two of the most diverse and abundant fungal genera in Alaska. LSU rDNA sequences from both curated sporocarp collections and soil PCR clone libraries sampled in various types of boreal forests of Alaska were subjected to phylogenetic and statistical ecological analyses. Our diversity assessments suggest that the genus Russula and Lactarius are highly diverse in Alaska. Some of these taxa were identified to known species, while others either matched unidentified sequences in reference databases or belonged to novel, previously unsequenced groups. Taxa in both genera showed strong habitat preference to one of the two major forest types in the sampled regions (black spruce forests and birch-aspen-white spruce forests), as supported by statistical tests. Our results demonstrate high diversity and strong ecological partitioning in two important ectomycorrhizal genera within a relatively small geographic region, but with implications to the expansive boreal forests. -
Phylogeny and Biogeography of the Remarkable Genus
www.nature.com/scientificreports OPEN Phylogeny and biogeography of the remarkable genus Bondarzewia (Basidiomycota, Russulales) Received: 25 May 2016 Jie Song*, Jia-Jia Chen*, Min Wang, Yuan-Yuan Chen & Bao-Kai Cui Accepted: 15 September 2016 Bondarzewia is a conspicuous and widely distributed mushroom genus, but little is known about its Published: 29 September 2016 origin and biogeography. Here, we investigated the systematics and biogeography of Bondarzewia species using multi-locus phylogenetic analysis. Four genetic markers, including the internal transcribed spacer (ITS), large nuclear ribosomal RNA subunit (nLSU), elongation factor 1-α (tef1) and mitochondrial small subunit rDNA (mtSSU), were used to infer the phylogenetic relationships of Bondarzewia. We performed Bayesian evolutionary analysis on the gene datasets of the largest and second largest subunits of RNA polymerase II (RPB1 and RPB2). From the results, we inferred that the maximum crown age of Bondarzewia is approximately 25.5 million-years-ago (Mya) and that tropical East Asia is likely to be its ancestral area, with three possible expansions leading to its distribution in North America, Europe and Oceania. Bondarzewia Singer (Bondarzewiaceae, Russulales) is a globally distributed genus of mushroom forming fungi. Some species are edible and have medicinal potential1,2, whereas some are considered to be forest pathogens3. Bondarzewia can be mistaken for the mycorrhizal genus Lactarius4. Phylogenetically, Bondarzewia forms sister relationship with the genus Heterobasidion in Bondarzewiaceae, but Lactarius is closed to Russula in Russulaceae5. Species of Bondarzewia are not mycorrhizal5, and eleven species are currently accepted in the genus: B. dickinsii (Berk.) Jia J. Chen, B.K. Cui & Y.C. -
Bory Tucholskie
Acta Mycologica DOI: 10.5586/am.1092 ORIGINAL RESEARCH PAPER Publication history Received: 2017-04-04 Accepted: 2017-06-16 Macromycetes of Central European lichen Published: 2017-07-20 Scots pine forests of the Cladonio-Pinetum Handling editor Maria Rudawska, Institute of Dendrology, Polish Academy of Juraszek 1927 type in the “Bory Tucholskie” Sciences, Poland National Park (NW Poland) Authors’ contributions BG collected and identifed the material; all authors contributed 1 2 to the manuscript preparation Barbara Grzesiak *, Magdalena Kochanowska , Janusz Kochanowski2 Funding 1 Department of Environmental Biology, Medical University of Lodz, Żeligowskiego 7/9, 90-752 The study was funded by the Lodz, Poland Forest Fund within the project 2 “Bory Tucholskie” National Park, Długa 33, 89-606 Charzykowy, Poland “Research on macroscopic fungi in the Cladonio-Pinetum in the * Corresponding author. Email: [email protected] ‘Bory Tucholskie’ National Park in 2014–2016”. Competing interests Abstract No competing interests have Between 2014 and 2016, research was carried out in the “Bory Tucholskie” National been declared. Park, with the aim to investigate the diversity of species of macrofungi in Cladonio- Pinetum. Te studies recorded 140 taxa of macromycetes, of which the majority was Copyright notice © The Author(s) 2017. This is an basidiomycete (136). Te highest number of taxa of fungi (98) was found in 2016, Open Access article distributed while the lowest (76) was found in the frst year of the study (2014). A total of 90 under the terms of the Creative taxa were found in 2015. Among the identifed species of macromycetes, Inonotus Commons Attribution License, obliquus is on the list of protected fungi covered by partial legal protection and 23 which permits redistribution, commercial and non- reported species are on the “Red list of the macrofungi in Poland”, which is concerned commercial, provided that the with the protection of the habitat of Cladonio-Pinetum. -
Mushrooms Traded As Food
TemaNord 2012:542 TemaNord Ved Stranden 18 DK-1061 Copenhagen K www.norden.org Mushrooms traded as food Nordic questionnaire, including guidance list on edible mushrooms suitable Mushrooms traded as food and not suitable for marketing. For industry, trade and food inspection Mushrooms recognised as edible have been collected and cultivated for many years. In the Nordic countries, the interest for eating mushrooms has increased. In order to ensure that Nordic consumers will be supplied with safe and well characterised, edible mushrooms on the market, this publication aims at providing tools for the in-house control of actors producing and trading mushroom products. The report is divided into two documents: a. Volume I: “Mushrooms traded as food - Nordic questionnaire and guidance list for edible mushrooms suitable for commercial marketing b. Volume II: Background information, with general information in section 1 and in section 2, risk assessments of more than 100 mushroom species All mushrooms on the lists have been risk assessed regarding their safe use as food, in particular focusing on their potential content of inherent toxicants. The goal is food safety. Oyster Mushroom (Pleurotus ostreatus) TemaNord 2012:542 ISBN 978-92-893-2382-6 http://dx.doi.org/10.6027/TN2012-542 TN2012542 omslag ENG.indd 1 11-07-2012 08:00:29 Mushrooms traded as food Nordic questionnaire, including guidance list on edible mushrooms suitable and not suitable for marketing. For industry, trade and food inspection Jørn Gry (consultant), Denmark, Christer Andersson, -
Ethnomycological Investigation in Serbia: Astonishing Realm of Mycomedicines and Mycofood
Journal of Fungi Article Ethnomycological Investigation in Serbia: Astonishing Realm of Mycomedicines and Mycofood Jelena Živkovi´c 1 , Marija Ivanov 2 , Dejan Stojkovi´c 2,* and Jasmina Glamoˇclija 2 1 Institute for Medicinal Plants Research “Dr Josif Pancic”, Tadeuša Koš´cuška1, 11000 Belgrade, Serbia; [email protected] 2 Department of Plant Physiology, Institute for Biological Research “Siniša Stankovi´c”—NationalInstitute of Republic of Serbia, University of Belgrade, Bulevar despota Stefana 142, 11000 Belgrade, Serbia; [email protected] (M.I.); [email protected] (J.G.) * Correspondence: [email protected]; Tel.: +381-112078419 Abstract: This study aims to fill the gaps in ethnomycological knowledge in Serbia by identifying various fungal species that have been used due to their medicinal or nutritional properties. Eth- nomycological information was gathered using semi-structured interviews with participants from different mycological associations in Serbia. A total of 62 participants were involved in this study. Eighty-five species belonging to 28 families were identified. All of the reported fungal species were pointed out as edible, and only 15 of them were declared as medicinal. The family Boletaceae was represented by the highest number of species, followed by Russulaceae, Agaricaceae and Polypo- raceae. We also performed detailed analysis of the literature in order to provide scientific evidence for the recorded medicinal use of fungi in Serbia. The male participants reported a higher level of ethnomycological knowledge compared to women, whereas the highest number of used fungi species was mentioned by participants within the age group of 61–80 years. In addition to preserving Citation: Živkovi´c,J.; Ivanov, M.; ethnomycological knowledge in Serbia, this study can present a good starting point for further Stojkovi´c,D.; Glamoˇclija,J.