A Compendium of Zoology
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Analysis of the Complete Mitochondrial DNA Sequence of the Brachiopod Terebratulina Retusa Places Brachiopoda Within the Protostomes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/12415870 Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes Article in Proceedings of the Royal Society B: Biological Sciences · November 1999 DOI: 10.1098/rspb.1999.0885 · Source: PubMed CITATIONS READS 83 50 2 authors, including: Martin Schlegel University of Leipzig 151 PUBLICATIONS 2,931 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Rare for a reason? Scale-dependence of factors influencing rarity and diversity of xylobiont beetles View project Bat diversity and vertical niche activity in the fluvial flood forest Leipzig View project All content following this page was uploaded by Martin Schlegel on 22 May 2014. The user has requested enhancement of the downloaded file. Analysis of the complete mitochondrial DNA sequence of the brachiopod Terebratulina retusa places Brachiopoda within the protostomes Alexandra Stechmann* and Martin Schlegel UniversitÌt Leipzig, Institut fÏr Zoologie/Spezielle Zoologie,Talstr. 33, 04103 Leipzig, Germany Brachiopod phylogeny is still a controversial subject. Analyses using nuclear 18SrRNA and mitochondrial 12SrDNA sequences place them within the protostomes but some recent interpretations of morphological data support a relationship with deuterostomes. In order to investigate brachiopod a¤nities within the metazoa further,we compared the gene arrangement on the brachiopod mitochondrial genome with several metazoan taxa. The complete (15 451bp) mitochondrial DNA (mtDNA) sequence of the articulate brachiopod Terebratulina retusa was determined from two overlapping long polymerase chain reaction products. All the genes are encoded on the same strand and gene order comparisons showed that only one major rearrangement is required to interconvert the T.retusa and Katharina tunicata (Mollusca: Polyplaco- phora) mitochondrial genomes. -
Hemichordate Phylogeny: a Molecular, and Genomic Approach By
Hemichordate Phylogeny: A molecular, and genomic approach by Johanna Taylor Cannon A dissertation submitted to the Graduate Faculty of Auburn University in partial fulfillment of the requirements for the Degree of Doctor of Philosophy Auburn, Alabama May 4, 2014 Keywords: phylogeny, evolution, Hemichordata, bioinformatics, invertebrates Copyright 2014 by Johanna Taylor Cannon Approved by Kenneth M. Halanych, Chair, Professor of Biological Sciences Jason Bond, Associate Professor of Biological Sciences Leslie Goertzen, Associate Professor of Biological Sciences Scott Santos, Associate Professor of Biological Sciences Abstract The phylogenetic relationships within Hemichordata are significant for understanding the evolution of the deuterostomes. Hemichordates possess several important morphological structures in common with chordates, and they have been fixtures in hypotheses on chordate origins for over 100 years. However, current evidence points to a sister relationship between echinoderms and hemichordates, indicating that these chordate-like features were likely present in the last common ancestor of these groups. Therefore, Hemichordata should be highly informative for studying deuterostome character evolution. Despite their importance for understanding the evolution of chordate-like morphological and developmental features, relationships within hemichordates have been poorly studied. At present, Hemichordata is divided into two classes, the solitary, free-living enteropneust worms, and the colonial, tube- dwelling Pterobranchia. The objective of this dissertation is to elucidate the evolutionary relationships of Hemichordata using multiple datasets. Chapter 1 provides an introduction to Hemichordata and outlines the objectives for the dissertation research. Chapter 2 presents a molecular phylogeny of hemichordates based on nuclear ribosomal 18S rDNA and two mitochondrial genes. In this chapter, we suggest that deep-sea family Saxipendiidae is nested within Harrimaniidae, and Torquaratoridae is affiliated with Ptychoderidae. -
Mines, France, and Onychophoran Terrestrialization
Carboniferous Onychophora from Montceau#les#Mines, France, and onychophoran terrestrialization The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Garwood, Russell J., Gregory D. Edgecombe, Sylvain Charbonnier, Dominique Chabard, Daniel Sotty, and Gonzalo Giribet. 2016. “Carboniferous Onychophora from Montceau#les#Mines, France, and onychophoran terrestrialization.” Invertebrate Biology 135 (3): 179-190. doi:10.1111/ivb.12130. http://dx.doi.org/10.1111/ivb.12130. Published Version doi:10.1111/ivb.12130 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:29408380 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Invertebrate Biology 135(3): 179–190. © 2016 The Authors. Invertebrate Biology published by Wiley Periodicals, Inc. on behalf of American Microscopical Society. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. DOI: 10.1111/ivb.12130 Carboniferous Onychophora from Montceau-les-Mines, France, and onychophoran terrestrialization Russell J. Garwood,1,2,a Gregory D. Edgecombe,2 Sylvain Charbonnier,3 Dominique Chabard,4 Daniel Sotty,4 and Gonzalo Giribet5,6 1School of Earth, Atmospheric and -
Animal Phylogeny and the Ancestry of Bilaterians: Inferences from Morphology and 18S Rdna Gene Sequences
EVOLUTION & DEVELOPMENT 3:3, 170–205 (2001) Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences Kevin J. Peterson and Douglas J. Eernisse* Department of Biological Sciences, Dartmouth College, Hanover NH 03755, USA; and *Department of Biological Science, California State University, Fullerton CA 92834-6850, USA *Author for correspondence (email: [email protected]) SUMMARY Insight into the origin and early evolution of the and protostomes, with ctenophores the bilaterian sister- animal phyla requires an understanding of how animal group, whereas 18S rDNA suggests that the root is within the groups are related to one another. Thus, we set out to explore Lophotrochozoa with acoel flatworms and gnathostomulids animal phylogeny by analyzing with maximum parsimony 138 as basal bilaterians, and with cnidarians the bilaterian sister- morphological characters from 40 metazoan groups, and 304 group. We suggest that this basal position of acoels and gna- 18S rDNA sequences, both separately and together. Both thostomulids is artifactal because for 1000 replicate phyloge- types of data agree that arthropods are not closely related to netic analyses with one random sequence as outgroup, the annelids: the former group with nematodes and other molting majority root with an acoel flatworm or gnathostomulid as the animals (Ecdysozoa), and the latter group with molluscs and basal ingroup lineage. When these problematic taxa are elim- other taxa with spiral cleavage. Furthermore, neither brachi- inated from the matrix, the combined analysis suggests that opods nor chaetognaths group with deuterostomes; brachiopods the root lies between the deuterostomes and protostomes, are allied with the molluscs and annelids (Lophotrochozoa), and Ctenophora is the bilaterian sister-group. -
Biodiversity
Founded in 1888 as the Marine Biological Laboratory Catalyst SPRING 2012 VOLUME 7, NUMBER 1 IN THIS ISSUE 4 All Species, Great and Small 8 Microbial Diversity, Leaf by Leaf 10 Life, Literature, and the Pursuit of Global Access BIODIVERSITY: Exploring Life on Earth Page 2 F R OM THE D ir ECTO R MBL Catalyst Dear Friends, SPRING 2012 VOLUME 7, NUMBER 1 In February, a group of MBL trustees, overseers, and friends took a memorable MBL Catalyst is published twice yearly by the Office of “eco-expedition” by safari through East Africa. For most of us, the most exciting Communications at the Marine Biological Laboratory aspect was seeing the megafauna – giraffes, zebras, lions, warthogs, wildebeests, (MBL) in Woods Hole, Massachusetts. The MBL is rhinoceroses—roaming wild in a pristine landscape. Except in tropical Asia, these dedicated to scientific discovery and improving the human condition through research and education large, charismatic animals aren’t found anywhere else on the planet—not in the in biology, biomedicine, and environmental science. Americas, Europe, Australia, or New Zealand. Founded in 1888, the MBL is an independent, nonprofit corporation. Why did they disappear? The reasons are debated, but there is good evidence Senior Advisors that overkill by prehistoric humans caused major losses. Unfortunately, the near- President and Director: Gary Borisy Chief Academic and extinction of these species 10,000 to 50,000 years ago is not the end of the story. Scientific Officer: Joshua Hamilton It is generally agreed that the Earth is facing another biodiversity crisis in this Director of External Relations: Pamela Clapp Hinkle century, with extinctions largely driven by destruction of habitat. -
Symposia and Workshops in Malacology
Revision: February 2021 Annotated Catalog of Malacological Meetings, Including Symposia and Workshops in Malacology Eugene V. Coan Santa Barbara Museum of Natural History, 2559 Puesta del Sol Road, Santa Barbara, California 93105, U.S.A.; [email protected] & Alan R. Kabat Museum of Comparative Zoology, Harvard University; [email protected] ABSTRACT As a much needed bibliographic tool, an annotated catalog is given of the symposia and workshops that have been held at malacological and generalist meetings over the past eight decades, together with their resulting publications. Particularly detailed emphasis is given to the meetings of Unitas Malacologica, the American Malacological Union/Society, and the Western Society of Malacologists. INTRODUCTION This paper catalogues the symposia and workshops that have taken place at malacological meetings over the last eight decades, as well as those that have occurred at other venues. The publications that resulted from these meetings and symposia are listed, chiefly because this information can be difficult for researchers to obtain. This catalog is not complete, and it emphasizes natural history and systematics. We have not endeavored to document every malacological meeting, particularly those before 1930, and those of European and Asian national societies that do not seem to have had symposia or have resulted in publications. Moreover, we have not thoroughly covered meetings on shellfisheries, mariculture, agricultural or other pests, and mollusk-borne diseases, nor those of shell-collectors’ groups. These organizations may want to provide their own listings for the historical record. In 1996, when this paper was originally published (Coan & Kabat, 1996), we did not include symposia, meetings, and workshops relating to the Cephalopoda, other than those occurring at Unitas Malacologica, the American Malacological Society, or other meetings already covered in detail as we did not have sufficient information about them. -
The Fox/Forkhead Transcription Factor Family of the Hemichordate Saccoglossus Kowalevskii
The Fox/Forkhead transcription factor family of the hemichordate Saccoglossus kowalevskii The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters. Citation Fritzenwanker, Jens H, John Gerhart, Robert M Freeman, and Christopher J Lowe. 2014. “The Fox/Forkhead transcription factor family of the hemichordate Saccoglossus kowalevskii.” EvoDevo 5 (1): 17. doi:10.1186/2041-9139-5-17. http://dx.doi.org/10.1186/2041-9139-5-17. Published Version doi:10.1186/2041-9139-5-17 Accessed February 16, 2015 3:46:47 PM EST Citable Link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12717458 Terms of Use This article was downloaded from Harvard University's DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http://nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms- of-use#LAA (Article begins on next page) The Fox/Forkhead transcription factor family of the hemichordate Saccoglossus kowalevskii Fritzenwanker et al. Fritzenwanker et al. EvoDevo 2014, 5:17 http://www.evodevojournal.com/content/5/1/17 Fritzenwanker et al. EvoDevo 2014, 5:17 http://www.evodevojournal.com/content/5/1/17 RESEARCH Open Access The Fox/Forkhead transcription factor family of the hemichordate Saccoglossus kowalevskii Jens H Fritzenwanker1*, John Gerhart2, Robert M Freeman Jr3 and Christopher J Lowe1 Abstract Background: The Fox gene family is a large family of transcription factors that arose early in organismal evolution dating back to at least the common ancestor of metazoans and fungi. They are key components of many gene regulatory networks essential for embryonic development. -
Uncorrected Proof
JrnlID 12526_ArtID 933_Proof# 1 - 07/12/2018 Marine Biodiversity https://doi.org/10.1007/s12526-018-0933-2 1 3 ORIGINAL PAPER 2 4 5 On the larva and the zooid of the pterobranch Rhabdopleura recondita 6 Beli, Cameron and Piraino, 2018 (Hemichordata, Graptolithina) 7 F. Strano1,2 & V. Micaroni3 & E. Beli4,5 & S. Mercurio6 & G. Scarì7 & R. Pennati6 & S. Piraino4,8 8 9 Received: 31 October 2018 /Revised: 29 November 2018 /Accepted: 3 December 2018 10 # Senckenberg Gesellschaft für Naturforschung 2018 11 Abstract 12 Hemichordates (Enteropneusta and Pterobranchia) belong to a small deuterostome invertebrate group that may offer insights on 13 the origin and evolution of the chordate nervous system. Among them, the colonial pterobranchOF Rhabdopleuridae are recognized 14 as living representatives of Graptolithina, a taxon with a rich fossil record. New information is provided here on the substrate 15 selection and the life cycle of Rhabdopleura recondita Beli, Cameron and Piraino, 2018, and for the first time, we describe the 16 nervous system organization of the larva and the adult zooid, as well as the morphological, neuroanatomical and behavioural 17 changes occurring throughout metamorphosis. Immunohistochemical analyses disclosed a centralized nervous system in the 18 sessile adult zooid, characterized by different neuronal subsets with three distinctPRO neurotransmitters, i.e. serotonin, dopamine and 19 RFamide. The peripheral nervous system comprises GABA-, serotonin-, and dopamine-immunoreactive cells. These observa- 20 tions support and integrate previous neuroanatomical findings on the pterobranchD zooid of Cephalodiscus gracilis. Indeed, this is 21 the first evidence of dopamine, RFamide and GABA neurotransmittersE in hemichordates pterobranchs. In contrast, the 22 lecithotrophic larva is characterized by a diffuse basiepidermal plexus of GABAergic cells, coupled with a small group of 23 serotonin-immunoreactive cells localized in the characteristic ventral depression. -
Halogenation Enzymes in Bacteria Associated with the Red-Banded Acorn Worm, Ptychodera Jamaicensis" (2011)
San Jose State University SJSU ScholarWorks Master's Theses Master's Theses and Graduate Research Fall 2011 Halogenation Enzymes in Bacteria Associated with the Red- banded Acorn Worm, Ptychodera jamaicensis Milena May Lilles San Jose State University Follow this and additional works at: https://scholarworks.sjsu.edu/etd_theses Recommended Citation Lilles, Milena May, "Halogenation Enzymes in Bacteria Associated with the Red-banded Acorn Worm, Ptychodera jamaicensis" (2011). Master's Theses. 4099. DOI: https://doi.org/10.31979/etd.snbx-gv6x https://scholarworks.sjsu.edu/etd_theses/4099 This Thesis is brought to you for free and open access by the Master's Theses and Graduate Research at SJSU ScholarWorks. It has been accepted for inclusion in Master's Theses by an authorized administrator of SJSU ScholarWorks. For more information, please contact [email protected]. HALOGENATION ENZYMES IN BACTERIA ASSOCIATED WITH THE RED- BANDED ACORN WORM, PTYCHODERA JAMAICENSIS A Thesis Presented to The Faculty of the Department of Biology San José State University In Partial Fulfillment of the Requirements for the Degree Master of Science by Milena M. Lilles December 2011 © 2011 Milena M. Lilles ALL RIGHTS RESERVED The Designated Thesis Committee Approves the Thesis Titled HALOGENATION ENZYMES IN BACTERIA ASSOCIATED WITH THE RED- BANDED ACORN WORM, PTYCHODERA JAMAICENSIS by Milena M. Lilles APPROVED FOR THE DEPARTMENT OF BIOLOGY SAN JOSÉ STATE UNIVERSITY December 2011 Dr. Sabine Rech Department of Biology Dr. Brandon White Department of Biology Dr. Roy Okuda Department of Chemistry ABSTRACT HALOGENATION ENZYMES IN BACTERIA ASSOCIATED WITH THE RED- BANDED ACORN WORM, PTYCHODERA JAMAICENSIS by Milena M. Lilles Organohalogens have diverse biological functions in the environment. -
Paired Sequence Difference in Ribosomal Rnas: Evolutionary and Phylogenetic Implications’
Paired Sequence Difference in Ribosomal RNAs: Evolutionary and Phylogenetic Implications’ Ward C. Wheeler and Rodney L. Honey&t Department of Organismic and Evolutionary Biology and the Museum of Comparative Zoology, Harvard University Ribosomal RNAs have secondary structures that are maintained by internal Watson- Crick pairing. Through analysis of chordate, arthropod, and plant 5s ribosomal RNA sequences, we show that Darwinian selection operates on these nucleotide sequences to maintain functionally important secondary structure. Insect phylog- enies based on nucleotide positions involved in pairing and the production of sec- ondary structure are incongruent with those constructed on the basis of positions that are not. Furthermore, phylogeny reconstruction using these nonpairing bases is concordant with other, morphological data. Introduction The neutral hypothesis, as stated by Kimura (1968, 1969, 1983), suggests that most changes in nucleotide sequence occur in the absence of positive selection whereas those that are deleterious are removed by negative or “purifying” selection. The im- plications of such a theory are broad not only with respect to the interpretation of molecular evolutionary processes but also in the reconstruction of evolutionary patterns as reflected in phylogenetic trees. RNA molecules provide a unique opportunity to examine the patterns of nu- cleotide sequence change. A large body of nucleotide sequences representing diverse organisms has been compiled (Erdmann et al. 1985) and small ribosomal RNA (rRNA) molecules have been used extensively in phylogenetic studies (Fox et al. 1980; Ohama et al. 1984; De Wachter et al. 1985). In addition, the structure of these molecules is such that one may address both the neutrality of nucleotide changes in RNAs and the effects that secondary structure might have on the derivation of phylogenies by means of sequence data. -
The Opiliones Tree of Life: Shedding Light on Harvestmen Relationships Through Transcriptomics
The Opiliones tree of life: shedding light on harvestmen relationships through transcriptomics The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Fernández, Rosa, Prashant P. Sharma, Ana Lúcia Tourinho, and Gonzalo Giribet. 2017. “The Opiliones tree of life: shedding light on harvestmen relationships through transcriptomics.” Proceedings of the Royal Society B: Biological Sciences 284 (1849): 20162340. doi:10.1098/rspb.2016.2340. http://dx.doi.org/10.1098/ rspb.2016.2340. Published Version doi:10.1098/rspb.2016.2340 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:32072171 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA The Opiliones tree of life: shedding light rspb.royalsocietypublishing.org on harvestmen relationships through transcriptomics Rosa Ferna´ndez1, Prashant P. Sharma2, Ana Lu´cia Tourinho1,3 Research and Gonzalo Giribet1 Cite this article: Ferna´ndez R, Sharma PP, 1Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, Tourinho AL, Giribet G. 2017 The Opiliones tree 26 Oxford Street, Cambridge, MA 02138, USA of life: shedding light on harvestmen 2Department of Zoology, University of Wisconsin-Madison, 352 Birge Hall, 430 Lincoln Drive, Madison, WI 53706, USA relationships through transcriptomics. 3Instituto Nacional de Pesquisas da Amazoˆnia, Coordenac¸a˜o de Biodiversidade (CBIO), Avenida Andre´ Arau´jo, Proc. R. Soc. B 284: 20162340. 2936, Aleixo, CEP 69011-970, Manaus, Amazonas, Brazil http://dx.doi.org/10.1098/rspb.2016.2340 RF, 0000-0002-4719-6640; GG, 0000-0002-5467-8429 Opiliones are iconic arachnids with a Palaeozoic origin and a diversity that reflects ancient biogeographic patterns dating back at least to the times of Received: 25 October 2016 Pangea. -
Ambulacraria - Andrew B
PHYLOGENETIC TREE OF LIFE – Ambulacraria - Andrew B. Smith AMBULACRARIA Andrew B. Smith Department of Palaeontology, The Natural History Museum, London SW7 5BD, UK Keywords: Echinoderms, crinoids, ophiuroids, asteroids, echinoids, holothurians, hemichordates, enteropneustes, pterobranchs, Xenoturbella, phylogeny, evolution, mode of life, developmental biology, fossil record, biodiversity Contents 1. General Introduction 2. The Echinodermata 2.1. General features 2.2. Crinoidea (sea lillies and feather stars) 2.3. Asteroidea (starfishes and cushion stars) 2.4. Ophiuroidea (brittlestars and basket stars) 2.5. Holothuroidea (sea cucumbers) 2.6. Echinoidea (sea urchins) 2.7. Stem group echinoderms 3. The Hemichordata 3.1. General features 3.2. Pterobranchs 3.3. Enteropneusts. 4. Plactosphaeroidea (Xenoturbella) Bibliography Bibliographical sketch Summary The Ambulacraria is a major clade of invertebrates that are the immediate sister group to the chordates. It comprises the phyla Echinodermata and Hemichordata and the puzzling genus Xenoturbella, the latter being included on the basis of its molecular similarity. The morphological characters uniting Echinodermata and Hemichordata are listed, as are those that characterize each phylum separately. The five classes of echinoderm and two classes of hemichordate are brief described, and information is provided about their mode of life, development, geological history and current views on their phylogenetic relationships. 1. General Introduction Ambulacraria is the formal name applied to a group of invertebrate animals that includes the echinoderms and hemichordates. They are exclusively marine and their origins extend back some 525 Ma to the Cambrian radiation when the earliest examples appear in the fossil record, although their actual origins probably lie slightly earlier, based on molecular clock studies.