Block – 2: Organic Reaction Mechanism Lecture-3
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Mesomeric Effect
Mesomeric effect +M effect of a methoxy group in an ether The mesomeric effect in chemistry is a property of substituents or functional groups in a chemical compound. It is defined as the polarity produced in the molecule by the interaction of two pi bonds or between a pi bond and lone –M effect of a carbonyl group in acrolein pair of electrons present on an adjacent atom. The effect is used in a qualitative way and describes the electron withdrawing or releasing properties of substituents based on relevant resonance structures and is symbolized by the letter M. The mesomeric effect is negative (–M) when the substituent is an electron-withdrawing group and the effect is positive (+M) when the substituent is an electron donating group. +M EFFECT ORDER : − –O > –NH2 > –NHCOR > –OR > –OCOR > –Ph > –CH3 > –F > –Cl > –Br > –I -M EFFECT ORDER : − –NO2 > –CN > –SO3H > –CHO > –COR > –COOCOR > –COOR > –COOH > –CONH2 > –COO The net electron flow from or to the substituent is determined also by the inductive effect. The mesomeric effect as a result of p-orbital overlap (resonance) has absolutely no effect on this inductive effect, as the inductive effect has purely to do with the electronegativity of the atoms and their topology in the molecule (which atoms are connected to which). The concepts of mesomeric effect, mesomerism and mesomer were introduced by Ingold in 1938 as an alternative to Pauling's synonymous concept of resonance.[1] "Mesomerism" in this context is often encountered in German and French literature, but in English literature the term "resonance" dominates. Contents Mesomerism in conjugated systems See also References External links Mesomerism in conjugated systems Mesomeric effect can be transmitted along any number of carbon atoms in a conjugated system. -
Topological Model on the Inductive Effect in Alkyl Halides Using Local Quantum Similarity and Reactivity Descriptors in the Density Functional Theory
Hindawi Publishing Corporation Journal of Quantum Chemistry Volume 2014, Article ID 850163, 12 pages http://dx.doi.org/10.1155/2014/850163 Research Article Topological Model on the Inductive Effect in Alkyl Halides Using Local Quantum Similarity and Reactivity Descriptors in the Density Functional Theory Alejandro Morales-Bayuelo1,2 and Ricardo Vivas-Reyes1 1 Grupo de Qu´ımica Cuantica´ y Teorica,´ Universidad de Cartagena, Programa de Qu´ımica, Facultad de Ciencias Exactas y Naturales, Cartagena de Indias, Colombia 2 Departamento de Ciencias Qu´ımicas, Universidad Nacional Andres Bello, Republica 275, Santiago, Chile Correspondence should be addressed to Alejandro Morales-Bayuelo; [email protected] and Ricardo Vivas-Reyes; [email protected] Received 19 September 2013; Revised 16 December 2013; Accepted 16 December 2013; Published 19 February 2014 Academic Editor: Daniel Glossman-Mitnik Copyright © 2014 A. Morales-Bayuelo and R. Vivas-Reyes. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. We present a topological analysis to the inductive effect through steric and electrostatic scales of quantitative convergence. Using the molecular similarity field based in the local guantum similarity (LQS) with the Topo-Geometrical Superposition Algorithm (TGSA) alignment method and the chemical reactivity in the density function theory (DFT) context, all calculations were carried out with Amsterdam Density Functional (ADF) code, using the gradient generalized approximation (GGA) and local exchange correlations PW91, in order to characterize the electronic effect by atomic size in the halogens group using a standard Slater-type- orbital basis set. -
Understanding Nonplanarity in Metallabenzene Complexes
1986 Organometallics 2007, 26, 1986-1995 Understanding Nonplanarity in Metallabenzene Complexes Jun Zhu, Guochen Jia,* and Zhenyang Lin* Department of Chemistry, The Hong Kong UniVersity of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, People’s Republic of China ReceiVed February 11, 2007 The nonplanarity found in metallabenzene complexes has been investigated theoretically via density functional theory (DFT) calculations. A metallabenzene has four occupied π molecular orbitals (8 π electrons) instead of three that benzene has. Our electronic structure analyses show that the extra occupied π molecular orbital, which is the highest occupied molecular orbital (HOMO) in many metallabenzenes, has antibonding interactions between the metal center and the metal-bonded ring-carbon atoms, providing the electronic driving force toward nonplanarity. Calculations indicate that the electronic driving force toward nonplanarity, however, is relatively small. Therefore, other factors such as steric effects also play important roles in determining the planarity of these metallabenzene complexes. In this paper, how the various electronic and steric factors interplay has been discussed. Introduction benzene complexes. For example, the formation mechanism and chemical reactivity of metallabenzene complexes have been Metallabenzenes, organometallic compounds formed by extensively studied.17 formal replacement of a CH group in benzene by an isolobal In the studies of metallabenzene complexes, a central issue transition metal fragment, were first considered theoretically by concerns the π-conjugation of the six-membered metal-contain- Hoffman et al. in 1979.1 Since the isolation of the first stable 2 ing ring. Indeed, it is true that metallabenzene complexes are osmabenzenes by Roper’s group in 1982, metallabenzene highly conjugated in view of the fact that the single-double complexes have attracted considerable interest over the last bond alternation is insignificant in the six-membered metal- quarter century. -
Rational Design of Small Molecule Fluorescent Probes for Biological Applications
Organic & Biomolecular Chemistry Rational Design of Small Molecule Fluorescent Probes for Biological Applications Journal: Organic & Biomolecular Chemistry Manuscript ID OB-REV-06-2020-001131.R1 Article Type: Review Article Date Submitted by the 13-Jul-2020 Author: Complete List of Authors: Jun, Joomyung; University of Pennsylvania, Chemistry; Massachusetts Institute of Technology, Chemistry Chenoweth, David; University of Pennsylvania, Department of Chemistry Petersson, E.; University of Pennsylvania, Chemistry Page 1 of 16 Organic & Biomolecular Chemistry ARTICLE Rational Design of Small Molecule Fluorescent Probes for Biological Applications a,b a a,c Received 00th January 20xx, Joomyung V. Jun, David M. Chenoweth* and E. James Petersson* Accepted 00th January 20xx Fluorescent small molecules are powerful tools for visualizing biological events, embodying an essential facet of chemical DOI: 10.1039/x0xx00000x biology. Since the discovery of the first organic fluorophore, quinine, in 1845, both synthetic and theoretical efforts have endeavored to “modulate” fluorescent compounds. An advantage of synthetic dyes is the ability to employ modern organic chemistry strategies to tailor chemical structures and thereby rationally tune photophysical properties and functionality of the fluorophore. This review explores general factors affecting fluorophore excitation and emission spectra, molar absorption, Stokes shift, and quantum efficiency; and provides guidelines for chemist to create novel probes. Structure- property relationships concerning the substituents are discussed in detail with examples for several dye families. Then, we present a survey of functional probes based on PeT, FRET, and environmental or photo-sensitivity, focusing on representative recent work in each category. We believe that a full understanding of dyes with diverse chemical moieties enables the rational design of probes for the precise interrogation of biochemical and biological phenomena. -
Pd/S,O-Ligand Catalysed Regioselective C–H Olefination of Anisole Derivates
Bachelor Thesis Scheikunde Pd/S,O-ligand Catalysed Regioselective C–H Olefination of Anisole Derivates door Rianne van Diest 14 december 2020 Studentnummer 11677635 Onderzoeksinstituut Verantwoordelijk docent Van ’t Hoff Institute for Molecular Sciences Dr. M.A. (Tati) Fernández Ibáñez Onderzoeksgroep Begeleider Synthetic Organic Chemistry Verena (Vivi) Sukowski 1 TABLE OF CONTENTS List of abbreviations ............................................................................................................................. 3 Abstract .................................................................................................................................................. 4 Popular scientific summary ................................................................................................................. 4 1. Introduction ....................................................................................................................................... 5 1.1 C–H activation as attractive strategy for green chemistry ............................................................ 5 1.2 Improving the selectivity of C–H activation with ligands ............................................................ 6 1.3 C–H olefination of anisole derivates ............................................................................................. 7 2. Background information .................................................................................................................. 9 2.1 C–H activation mechanisms ......................................................................................................... -
Principles of Drug Action 1, Spring 2005, Resonance and Induction
Principles Of Drug Action 1, Spring 2005, Resonance and Induction RESONANCE AND INDUCTION TUTORIAL Jack DeRuiter The terms "resonance" and "induction" refer to the electronic effects that atoms or functional groups may have within a compound. These effects are defined below and are dependent on the valence, bonding order and electronegativity of atoms, as well as the molecular geometry. Thus it is important that you understand these concepts prior to reviewing this tutorial. I. INDUCTION Induction or the inductive effect of an atom or functional group is a function of that groups 1). electronegativity, 2). bonding order and charge and 3). position within a structure. Inductive effects refer to those electronic effects of an atom or functional group can contribute through single bonds such as saturated (sp3) carbon atoms! This is very different from resonance effects discussed later in this section. The contribution of electronegativity, bonding order and position toward induction is as follows: Electronegativity: Atoms or functional groups that are electronegative relative to hydrogen such as the halogens, oxygen, nitrogen, etc. may have a negative inductive effect (-I), depending on their bonding order (see the Table below). Thus these atoms withdraw electron density through the single bond structure of a compound and can assist in the stabilization of negative charge that may form in reactions. One such reaction where -I groups can have a stabilizing (enhancing) effect is the ionization of acids. Consider the case of acetic acid, chloroacetic acid and trichloroacetic acid shown below. All three of these compounds can ionize (loss of proton from the carboxyl OH). -
John William Baker and the Origin of the Baker-Nathan Effect
82 Bull. Hist. Chem., VOLUME 37, Number 2 (2012) JOHN WILLIAM BAKER AND THE ORIGIN OF THE BAKER-NATHAN EFFECT Martin D. Saltzman, Providence College, [email protected] The Baker-Nathan effect was a theory proposed by independent school in west London from 1909-1916. He John William Baker (1898-1967) and Wilfred Samuel was awarded a Royal Scholarship in Chemistry which Nathan (1910-1961) of Leeds University in 1935 to allowed him to enroll at the Imperial College of Science explain certain anomalous results obtained in SN2 reac- and Technology in London. His exceptional aptitude for tions carried out in solution. The explanation produced chemistry was shown by his passing the intermediate by them was expanded to a general type of no-bond exams for the B.Sc. Degree by the end of 1916. In April resonance known as hyperconjugation by Mulliken in 1917 he was conscripted and assigned to the Royal En- papers published in 1939 and 1941 (1). Hyperconjuga- gineers where he was commissioned a Lieutenant. His tion is today defined as the conjugation of polarized major responsibilities were in the area of water purifica- sigma bonds and adjacent pi orbitals. This theory has tion. In May 1918 he was sent to Mesopotamia (now Iraq) been applied to a host of anomalous physical measure- where he was assigned the same duties. He was finally ments such as bond lengths and dipole moments. The demobilized in 1920 and returned to Imperial where he Baker-Nathan effect as it was originally framed is no was awarded his B.Sc. -
Ionization Constants of Fluorinated Acids
IONIZATION CONSTANTS OF FLUORINATED ACIDS DISSERTATION Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of The Ohio State University By Charles Junius Fox, B.Sc., M.Sc. The Ohio State University 1953 • * • • * • • • • * * • * » * * • t , » : *: * Approved by: Adviser ACKNOWLEDGEMENT It is with deep gratitude that the author wishes to express his appreciation to Dr. A.L. Henne for his personal friendship and for his guidance in this research. Appreciation to the Socony-Vacuum Oil Company is also expressed for the support received through their fellowship at the Ohio State University, Department of Chemistry during the academic year 1950-1951. i 933328 TABLE OF CONTENTS Page Introduction ........................................ 1 Historical ................................... 4- Results of This Investigation Synthesis 5>5>S-Trifluorovaleric Acid .............. 5 4,4,4-Trifluorocrotonic Acid ............... 5 2-Fluoroacrylic Acid ....................... 6 Perfluoroacrylic Acid ...................... 7 3,3-Difluoroacrylic Acid ............... 12 Physical Measurements ..... ................ 14- Effect of Substituents on Ionization Constants 19 Ionization Constants of Saturated Aliphatic Acids ......................... 22 Ionization Constants of Unsaturated Aliphatic Acids ........................................ 24 Experimental A. Synthesis 1.0 Preparation of 5»5>5-Trifluorovaleric Acid 1.1 Fluorination of CCla(CHa )sCH2Cl ....... 35 1.2 Preparation of CFa(CHa )aCHa0H ........ 35 1.3 Oxidation of CFa( CKa)aCHa0H ............ 36 1.4 Attempted Preparation of CFa(CHS )aCHa0H from CFaCHaCHaCl ....................... 37 ii Page 1,5 Attempted Preparation of CFa(CHa )3C0aC3H 6 from CFaCHaCHaCl .......... 37 2.0 Preparation of CFaCH=CHCOaH ............. 37 3.0 Preparation of 1-Fluoroacryllc Acid 3.1 Preparation of .CHaBrCHBrCOaCHa .......... 38 3.2 Preparation of CH2ClCBrClCOaCHa ...... 38 3.3 Fluorination of CHaClCBrClCOaCHa ..... -
Interpretation of Both Electron Pushing and Electron Withdrawing Inductive Effect of Alkyl Groups in Terms of Mulliken–Jaffe’S Charge Coefficient Parameters (B)∗
GENERAL ARTICLE Interpretation of Both Electron Pushing and Electron Withdrawing Inductive Effect of Alkyl Groups in Terms of Mulliken–Jaffe’s Charge Coefficient Parameters (b)∗ Asim K Das Alkyl groups can delocalize both the negative and positive charges through ion (charge)-induced dipole interaction with the polarizable alkyl groups. This charge induced polariza- tion of the alkyl group to delocalize the charge is the origin of ‘inductive effect’ of the alkyl groups. The apparent less effi- ciency in negative charge delocalization compared to positive charge delocalization by a particular alkyl group is attributed Asim K Das is currently a to the less polarizing field strength of the anionic charge. senior Professor of Chemistry Department, Visva Bharati, a Central University, 1. Introduction Santiniketan. His research interest is in the field of ff thermodynamic and kinetic The concept of inductive e ect and its application are the impor- aspects of metal-ligand tant course components of organic chemistry taught at the high interactions. He has authored school and undergraduate level. Inductive effect actually delocal- some advanced level text izes the charge [1, 2]. Depending on the properties of the atoms books on inorganic chemistry, ff bioinorganic chemistry and or groups, they can show electron withdrawing (i.e. –I e ect) or environmental chemistry for electron pushing (i.e. +Ieffect) inductive effect [1, 2]. The +Ief- the undergraduate and fect delocalizes the positive charge while the −Ieffect delocalizes postgraduate students. the negative charge. By considering the inductive effect of the groups or atoms, many important aspects of organic chemistry like the relative stabilities of carbocations and carbanions, acid- base strength, reaction mechanism, etc., are explained [1, 2] in the classrooms, and these are also discussed in all organic textbooks. -
Inductive Effect
Group B REACTION MECHANISM IN ORGANIC CHEMISTRY(I) Dr. Akanksha Upadhyay Assistant Professor Department of Chemistry Women’s College, Samastipur Inductive Effect Definition : The partial displacement of sigma electron pairs towards more electronegative atom is said to be Inductive effect. OR It can be defined as the polarization of one bond due to the polarization of another bond. Characteristics of Inductive effect: • It takes place as a result of differences in the electronegativity of two atoms which form a sigma bond. • The physical and chemical properties of compounds is controlled by Inductive Effect. • As it moves away from the groups producing it, its magnitude decreases. • I effect is a permanent effect. • It performs on σ bonded electron. Types of Inductive Effect (I effect) There are two types of Inductive Effect: 1. Positive Inductive Effect (+I effect) : Electron donating substituents tend to donate shared electron pair towards the carbon to which that group is connected. Hence carbon bears partial negative charge, this is known as positive inductive effect. The groups which cause such effect are called as +I groups. + I effect in increasing order: H < CH2CH3 < C(CH3)3 2. Negative Inductive Effect (-I effect) : Electron withdrawing substituents tend to withdraw electron pair from the carbon to which that group is connected Hence carbon bears partial positive charge, this is known as negative inductive effect. The groups which cause such effect are called as -I groups -I effect in increasing order: + H < C6H5< OR < I < Cl < CONH2 < COOH < CHO < CN < NH3 Greater the number of alkyl groups, the greater is the +I effect and higher will be the acidity of the compound and vice versa. -
Measuring the Electronic Effect of Some Phosphines and Phosphites
Measuring the electronic effect of some phosphines and phosphites By Sanaa Moftah Ali Abushhewa A dissertation submitted to the University of Manchester for the degree of Master of Science by research in the Faculty of Engineering and Physical Sciences. School of Chemistry 2010 Contents page Abstract 6 Declaration 7 Acknowledgement 8 1. Introduction 9 1.1 History of Phosphorus 9 1.2 Phosphorus (III) compounds 10 1.3 Preparation and Properties of Phosphines 11 1.4 Preparation and Properties of Phosphites 12 1.5 Bonding of phosphorus (III) ligands 14 1.6 Measurement of Electronic and Steric Effects 15 1.7 Steric parameter 17 1.8 Electronic parameter 17 1.9 Effects of electronegative substituents 21 1.10 Phosphines and Phosphites ligand effects 21 2. Experimental section 24 General conditions 25 2.1- Preparation of phosphites 25 2.1.1- Synthesis of 2, 2’- Biphenyl Chlorophosphite 25 2.1.2- Synthesis of 1H,1H,2H,2H-perfluorodecyldiphenyl phosphinite 25 2 2.1.3- Synthesis of 3-fluorophenyldiphenyl phosphinite 26 2.1.4- Synthesis of 2-fluorophenyldiphenyl phosphinite 26 2.1.5- Synthesis of 2, 2-biphenyltrifluoroethyl phosphinite 27 2.1.6- Synthesis of 2, 2'-biphenylhexafluoroisopropyl phosphinite 27 2.1.7-Synthesis of 2, 2'-biphenylpropyl phosphite 28 2.2-Preparation of P(III) Selenides 28 2.2.1- Synthesis of triphenylphosphine selenide 28 2.2.2- Synthesis of triphenylphosphite selenide 29 2.2.3- Synthesis of tris(2,4,6-trimethylphenyl)phosphite selenide 29 2.2.4- Synthesis of diphenyl(o-tolyl) phosphine selenide 30 2.2.5- Synthesis of 2, 2’-biphenyl -
Copyrighted Material
1 Structure and bonding Key point. Organic chemistry is the study of carbon compounds. Ionic bonds involve elements gaining or losing electrons but the carbon atom is able to form four covalent bonds by sharing the four electrons in its outer shell. Single (CÀC), double (CÀÀC) or triple bonds (CÀÀC) to carbon are possible. When carbon is bonded to a different element, the electrons are not shared equally, as electro- negative atoms (or groups) attract the electron density whereas electropositive atoms (or groups) repel the electron density. An understanding of the electron- withdrawing or -donating ability of atoms, or a group of atoms, can be used to predict whether an organic compound is a good acid or base. conjugate acid of Et N is stabilised resonance stabilisation of the allyl cation 3 Et by inductive effects CH2 H2C Et N H +M group Et three +I groups 1.1 Ionic versus covalent bonds Ionic bonds are formed between molecules with opposite charges. The nega- tively charged anion will electrostatically attract the positively charged cation. This is present in (inorganic) salts. Cation Anion e.g. Na Cl Covalent bonds are formed when a pair of electrons is shared between two atoms. A single line representsCOPYRIGHTED the two-electron bond. MATERIAL oo oo o o o Atom Atome.g. Cl Cl o Cl o Cl o oo oo Keynotes in Organic Chemistry, Second Edition. Andrew F. Parsons. Ó 2014 John Wiley & Sons, Ltd. Published 2014 by John Wiley & Sons, Ltd. 2 Structure and bonding Coordinate (or dative) bonds are formed when a pair of electrons is shared between two atoms.