Larger Fungi on Sandy Grass Heaths and Sand Dunes in Scandinavia
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Chorioactidaceae: a New Family in the Pezizales (Ascomycota) with Four Genera
mycological research 112 (2008) 513–527 journal homepage: www.elsevier.com/locate/mycres Chorioactidaceae: a new family in the Pezizales (Ascomycota) with four genera Donald H. PFISTER*, Caroline SLATER, Karen HANSENy Harvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Avenue, Cambridge, MA 02138, USA article info abstract Article history: Molecular phylogenetic and comparative morphological studies provide evidence for the Received 15 June 2007 recognition of a new family, Chorioactidaceae, in the Pezizales. Four genera are placed in Received in revised form the family: Chorioactis, Desmazierella, Neournula, and Wolfina. Based on parsimony, like- 1 November 2007 lihood, and Bayesian analyses of LSU, SSU, and RPB2 sequence data, Chorioactidaceae repre- Accepted 29 November 2007 sents a sister clade to the Sarcosomataceae, to which some of these taxa were previously Corresponding Editor: referred. Morphologically these genera are similar in pigmentation, excipular construction, H. Thorsten Lumbsch and asci, which mostly have terminal opercula and rounded, sometimes forked, bases without croziers. Ascospores have cyanophilic walls or cyanophilic surface ornamentation Keywords: in the form of ridges or warts. So far as is known the ascospores and the cells of the LSU paraphyses of all species are multinucleate. The six species recognized in these four genera RPB2 all have limited geographical distributions in the northern hemisphere. Sarcoscyphaceae ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Sarcosomataceae SSU Introduction indicated a relationship of these taxa to the Sarcosomataceae and discussed the group as the Chorioactis clade. Only six spe- The Pezizales, operculate cup-fungi, have been put on rela- cies are assigned to these genera, most of which are infre- tively stable phylogenetic footing as summarized by Hansen quently collected. -
Peziza and Pezizaceae Inferred from Multiple Nuclear Genes: RPB2, -Tubulin, and LSU Rdna
Molecular Phylogenetics and Evolution 36 (2005) 1–23 www.elsevier.com/locate/ympev Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, -tubulin, and LSU rDNA Karen Hansen ¤, Katherine F. LoBuglio, Donald H. PWster Harvard University Herbaria, Cambridge, MA 02138, USA Received 5 May 2004; revised 17 December 2004 Available online 22 April 2005 Abstract To provide a robust phylogeny of Pezizaceae, partial sequences from two nuclear protein-coding genes, RPB2 (encoding the sec- ond largest subunit of RNA polymerase II) and -tubulin, were obtained from 69 and 72 specimens, respectively, to analyze with nuclear ribosomal large subunit RNA gene sequences (LSU). The three-gene data set includes 32 species of Peziza, and 27 species from nine additional epigeous and six hypogeous (truZe) pezizaceous genera. Analyses of the combined LSU, RPB2, and -tubulin data set using parsimony, maximum likelihood, and Bayesian approaches identify 14 Wne-scale lineages within Pezizaceae. Species of Peziza occur in eight of the lineages, spread among other genera of the family, conWrming the non-monophyly of the genus. Although parsimony analyses of the three-gene data set produced a nearly completely resolved strict consensus tree, with increased conWdence, relationships between the lineages are still resolved with mostly weak bootstrap support. Bayesian analyses of the three- gene data, however, show support for several more inclusive clades, mostly congruent with Bayesian analyses of RPB2. No strongly supported incongruence was found among phylogenies derived from the separate LSU, RPB2, and -tubulin data sets. The RPB2 region appeared to be the most informative single gene region based on resolution and clade support, and accounts for the greatest number of potentially parsimony informative characters within the combined data set, followed by the LSU and the -tubulin region. -
Evolution of Gilled Mushrooms and Puffballs Inferred from Ribosomal DNA Sequences
Proc. Natl. Acad. Sci. USA Vol. 94, pp. 12002–12006, October 1997 Evolution Evolution of gilled mushrooms and puffballs inferred from ribosomal DNA sequences DAVID S. HIBBETT*†,ELIZABETH M. PINE*, EWALD LANGER‡,GITTA LANGER‡, AND MICHAEL J. DONOGHUE* *Harvard University Herbaria, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138; and ‡Eberhard–Karls–Universita¨t Tu¨bingen, Spezielle BotanikyMykologie, Auf der Morgenstelle 1, D-72076 Tu¨bingen, Germany Communicated by Andrew H. Knoll, Harvard University, Cambridge, MA, August 11, 1997 (received for review May 12, 1997) ABSTRACT Homobasidiomycete fungi display many bearing structures (the hymenophore). All fungi that produce complex fruiting body morphologies, including mushrooms spores on an exposed hymenophore were grouped in the class and puffballs, but their anatomical simplicity has confounded Hymenomycetes, which contained two orders: Agaricales, for efforts to understand the evolution of these forms. We per- gilled mushrooms, and Aphyllophorales, for polypores, formed a comprehensive phylogenetic analysis of homobasi- toothed fungi, coral fungi, and resupinate, crust-like forms. diomycetes, using sequences from nuclear and mitochondrial Puffballs, and all other fungi with enclosed hymenophores, ribosomal DNA, with an emphasis on understanding evolu- were placed in the class Gasteromycetes. Anatomical studies tionary relationships of gilled mushrooms and puffballs. since the late 19th century have suggested that this traditional Parsimony-based -
The Ascomycota
Papers and Proceedings of the Royal Society of Tasmania, Volume 139, 2005 49 A PRELIMINARY CENSUS OF THE MACROFUNGI OF MT WELLINGTON, TASMANIA – THE ASCOMYCOTA by Genevieve M. Gates and David A. Ratkowsky (with one appendix) Gates, G. M. & Ratkowsky, D. A. 2005 (16:xii): A preliminary census of the macrofungi of Mt Wellington, Tasmania – the Ascomycota. Papers and Proceedings of the Royal Society of Tasmania 139: 49–52. ISSN 0080-4703. School of Plant Science, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia (GMG*); School of Agricultural Science, University of Tasmania, Private Bag 54, Hobart, Tasmania 7001, Australia (DAR). *Author for correspondence. This work continues the process of documenting the macrofungi of Mt Wellington. Two earlier publications were concerned with the gilled and non-gilled Basidiomycota, respectively, excluding the sequestrate species. The present work deals with the non-sequestrate Ascomycota, of which 42 species were found on Mt Wellington. Key Words: Macrofungi, Mt Wellington (Tasmania), Ascomycota, cup fungi, disc fungi. INTRODUCTION For the purposes of this survey, all Ascomycota having a conspicuous fruiting body were considered, excluding Two earlier papers in the preliminary documentation of the endophytes. Material collected during forays was described macrofungi of Mt Wellington, Tasmania, were confined macroscopically shortly after collection, and examined to the ‘agarics’ (gilled fungi) and the non-gilled species, microscopically to obtain details such as the size of the -
First Report of Albifimbria Verrucaria and Deconica Coprophila (Syn: Psylocybe Coprophila) from Field Soil in Korea
The Korean Journal of Mycology www.kjmycology.or.kr RESEARCH ARTICLE First Report of Albifimbria verrucaria and Deconica coprophila (Syn: Psylocybe coprophila) from Field Soil in Korea 1 1 1 1 1 Sun Kumar Gurung , Mahesh Adhikari , Sang Woo Kim , Hyun Goo Lee , Ju Han Jun 1 2 1,* Byeong Heon Gwon , Hyang Burm Lee , and Youn Su Lee 1 Division of Biological Resource Sciences, Kangwon National University, Chuncheon 24341, Korea 2 Divison of Food Technology, Biotechnology and Agrochemistry, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Korea *Corresponding author: [email protected] ABSTRACT During a survey of fungal diversity in Korea, two fungal strains, KNU17-1 and KNU17-199, were isolated from paddy field soil in Yangpyeong and Sancheong, respectively, in Korea. These fungal isolates were analyzed based on their morphological characteristics and the molecular phylogenetic analysis of the internal transcribed spacer (ITS) rDNA sequences. On the basis of their morphology and phylogeny, KNU17-1 and KNU17-199 isolates were identified as Albifimbria verrucaria and Deconica coprophila, respectively. To the best of our knowledge, A. verrucaria and D. coprophila have not yet been reported in Korea. Thus, this is the first report of these species in Korea. Keywords: Albifimbria verrucaria, Deconica coprophila, Morphology OPEN ACCESS INTRODUCTION pISSN : 0253-651X The genus Albifimbria L. Lombard & Crous 2016 belongs to the family Stachybotryaceae of Ascomycotic eISSN : 2383-5249 fungi. These fungi are characterized by verrucose setae and conidia bearing a funnel-shaped mucoidal Kor. J. Mycol. 2019 September, 47(3): 209-18 https://doi.org/10.4489/KJM.20190025 appendage [1]. -
Geoglossoid Fungi in Slovakia II. Trichoglossum Octopartitum, a New Species for the Country
CZECH MYCOL. 62(1): 13–18, 2010 Geoglossoid fungi in Slovakia II. Trichoglossum octopartitum, a new species for the country 1* 1 2 VIKTOR KUČERA , PAVEL LIZOŇ and IVONA KAUTMANOVÁ 1 Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 9, SK–845 23, Bratislava, Slovakia; [email protected], [email protected] 2 Natural History Museum, Slovak National Museum, Vajanského nábr. 2, SK–810 06 Bratislava, Slovakia; [email protected] *corresponding author Kučera V., Lizoň P. and Kautmanová I. (2010): Geoglossoid fungi in Slovakia II. Trichoglossum octopartitum, a new species for the country. – Czech Mycol. 62(1): 13–18. Some recent Slovak collections of Trichoglossum were identified as the rare species T. octoparti- tum. The species had not been reported before from Slovakia or central Europe. The identification was confirmed by comparing the collections with the type material originating from Belize. Key words: Ascomycetes, grassland fungi, biodiversity, description, taxonomy. Kučera V., Lizoň P. a Kautmanová I. (2010): Geoglossoidné huby Slovenska II. Tri- choglossum octopartitum, nový druh pre naše územie. – Czech Mycol. 62(1): 13–18. Niektoré recentné slovenské zbery rodu Trichoglossum sme určili ako T. octopartitum. Tento druh nebol doteraz udávaný zo Slovenska, ani zo strednej Európy. Určenie bolo overené aj porovnaním s typovým materiálom z Belize. INTRODUCTION Since the rediscovery of Trichoglossum hirsutum (Pers.) Boud. in 1994 (Mráz 1997), several geoglossoid fungi new to Slovakia have been collected and identi- fied. In Trichoglossum, for example, Trichoglossum walteri (Berk.) E.J. Durand was reported in 2001 (Ripková et al. 2007) and Trichoglossum variabile (E.J. Durand) Nannf. in 2005 (Kučera et al. -
The Correspondence of Peter Macowan (1830 - 1909) and George William Clinton (1807 - 1885)
The Correspondence of Peter MacOwan (1830 - 1909) and George William Clinton (1807 - 1885) Res Botanica Missouri Botanical Garden December 13, 2015 Edited by P. M. Eckel, P.O. Box 299, Missouri Botanical Garden, St. Louis, Missouri, 63166-0299; email: mailto:[email protected] Portrait of Peter MacOwan from the Clinton Correspondence, Buffalo Museum of Science, Buffalo, New York, USA. Another portrait is noted by Sayre (1975), published by Marloth (1913). The proper citation of this electronic publication is: "Eckel, P. M., ed. 2015. Correspondence of Peter MacOwan(1830–1909) and G. W. Clinton (1807–1885). 60 pp. Res Botanica, Missouri Botanical Garden Web site.” 2 Acknowledgements I thank the following sequence of research librarians of the Buffalo Museum of Science during the decade the correspondence was transcribed: Lisa Seivert, who, with her volunteers, constructed the excellent original digital index and catalogue to these letters, her successors Rachael Brew, David Hemmingway, and Kathy Leacock. I thank John Grehan, Director of Science and Collections, Buffalo Museum of Science, Buffalo, New York, for his generous assistance in permitting me continued access to the Museum's collections. Angela Todd and Robert Kiger of the Hunt Institute for Botanical Documentation, Carnegie-Melon University, Pittsburgh, Pennsylvania, provided the illustration of George Clinton that matches a transcribed letter by Michael Shuck Bebb, used with permission. Terry Hedderson, Keeper, Bolus Herbarium, Capetown, South Africa, provided valuable references to the botany of South Africa and provided an inspirational base for the production of these letters when he visited St. Louis a few years ago. Richard Zander has provided invaluable technical assistance with computer issues, especially presentation on the Web site, manuscript review, data search, and moral support. -
Tile Geoglossaceae of Sweden **
ARKIV FOR· BOTANIK. BAND 30 A. N:o 4. Tile Geoglossaceae of Sweden (with Regard also to the Surrounding CQuntries). By J. A. NANNFELDT. With 5 plates and 6 figures in the text. Communicated June 4th, 1941, by NILS E. SVEDELIUS and ROB. E. FRIES. There are hardly any Discomycetes that have been the subject of so many monographs as the Geoglossaceae. Already in 1875, COOKE (1875 a, 1875 b) published two monographic studies, and some years later he described and illustrated in his Mycographia (COOKE 1879) the majority of the species known at that time. In 1897, MAssEE published a world monograph of the family, though this paper - as so many other publications by the same author - is mainly a compi lation. DURA.ND'S monog-raph (1908, with a supplement in 19~1) of the North American species is a model of accuracy and thoroughness, and indispensable also for other parts of the world. This monograph was the base for a pamphlet by LLOYD (1916) on the Geoglossaceae of the world. If we add v. LUYK'S revision (1919) of the Geoglossaceae in the Rijks herbarium at Leiden, with all PERSOON'S specimens, SINDEN & FITZPATRICK'S paper (1930) on a new species of T1'ichoglos8ttrli, IMAI'S studies (1934, 1936 a, 1936 b, 1938) on Japanese species of certain genera, his list of the Norwegian Geoglos8aceae (IMA.I 1940), and MAIN'S papers (1936, 19~0) with descriptions of several new American species, the most important contri butions of recent date to the taxonomy of the family have been mentioned. -
Gasteroid Mycobiota (Agaricales, Geastrales, And
Gasteroid mycobiota ( Agaricales , Geastrales , and Phallales ) from Espinal forests in Argentina 1,* 2 MARÍA L. HERNÁNDEZ CAFFOT , XIMENA A. BROIERO , MARÍA E. 2 2 3 FERNÁNDEZ , LEDA SILVERA RUIZ , ESTEBAN M. CRESPO , EDUARDO R. 1 NOUHRA 1 Instituto Multidisciplinario de Biología Vegetal, CONICET–Universidad Nacional de Córdoba, CC 495, CP 5000, Córdoba, Argentina. 2 Facultad de Ciencias Exactas Físicas y Naturales, Universidad Nacional de Córdoba, CP 5000, Córdoba, Argentina. 3 Cátedra de Diversidad Vegetal I, Facultad de Química, Bioquímica y Farmacia., Universidad Nacional de San Luis, CP 5700 San Luis, Argentina. CORRESPONDENCE TO : [email protected] *CURRENT ADDRESS : Centro de Investigaciones y Transferencia de Jujuy (CIT-JUJUY), CONICET- Universidad Nacional de Jujuy, CP 4600, San Salvador de Jujuy, Jujuy, Argentina. ABSTRACT — Sampling and analysis of gasteroid agaricomycete species ( Phallomycetidae and Agaricomycetidae ) associated with relicts of native Espinal forests in the southeast region of Córdoba, Argentina, have identified twenty-nine species in fourteen genera: Bovista (4), Calvatia (2), Cyathus (1), Disciseda (4), Geastrum (7), Itajahya (1), Lycoperdon (2), Lysurus (2), Morganella (1), Mycenastrum (1), Myriostoma (1), Sphaerobolus (1), Tulostoma (1), and Vascellum (1). The gasteroid species from the sampled Espinal forests showed an overall similarity with those recorded from neighboring phytogeographic regions; however, a new species of Lysurus was found and is briefly described, and Bovista coprophila is a new record for Argentina. KEY WORDS — Agaricomycetidae , fungal distribution, native woodlands, Phallomycetidae . Introduction The Espinal Phytogeographic Province is a transitional ecosystem between the Pampeana, the Chaqueña, and the Monte Phytogeographic Provinces in Argentina (Cabrera 1971). The Espinal forests, mainly dominated by Prosopis L. -
Improving Phylogenetic Inference of Mushrooms with RPB1 and RPB2 Nucleotide Sequences (Inocybe; Agaricales)
Molecular Phylogenetics and Evolution 35 (2005) 1–20 www.elsevier.com/locate/ympev Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales) P. Brandon Matheny¤,1 Biology Department, Box 351330, University of Washington, Seattle, WA 98195-5325, USA Received 9 July 2003; revised 15 May 2004 Available online 18 January 2005 Abstract Approximately 3000 bp across 84 taxa have been analyzed for variable regions of RPB1, RPB2, and nLSU-rDNA to infer phylo- genetic relationships in the large ectomycorrhizal mushroom genus Inocybe (Agaricales; Basidiomycota). This study represents the Wrst eVort to combine variable regions of RPB1 and RPB2 with nLSU-rDNA for low-level phylogenetic studies in mushroom-form- ing fungi. Combination of the three loci increases non-parametric bootstrap support, Bayesian posterior probabilities, and resolution for numerous clades compared to separate gene analyses. These data suggest the evolution of at least Wve major lineages in Inocybe— the Inocybe clade, the Mallocybe clade, the Auritella clade, the Inosperma clade, and the Pseudosperma clade. Additionally, many clades nested within each major lineage are strongly supported. These results also suggest the family Crepiodataceae sensu stricto is sister to Inocybe. Recognition of Inocybe at the family level, the Inocybaceae, is recommended. 2004 Elsevier Inc. All rights reserved. Keywords: Cortinariaceae; Fungi; Inocybaceae; nLSU-rDNA; RNA polymerase II; Systematics 1. Introduction room taxa in Inocybe and outgroups of the Agaricales, or euagarics clade, has been extended to include partial Nuclear genes that encode the two largest subunits of sequences of RPB1, RPB2, and nuclear large subunit RNA polymerase II are proving useful to infer the phy- ribosomal DNA (nLSU). -
<I>Psilocybe</I> Ss in Thailand
ISSN (print) 0093-4666 © 2012. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/119.65 Volume 119, pp. 65–81 January–March 2012 Psilocybe s.s. in Thailand: four new species and a review of previously recorded species Gastón Guzmán1*, Florencia Ramírez Guillén1, Kevin D. Hyde2,3 & Samantha C. Karunarathna2,4 1 Instituto de Ecología, Apartado Postal 63, Xalapa 91070, Veracruz, Mexico 2 School of Science, Mae Fah Luang University, 333 Moo 1, Tasud, Muang, Chiang Rai 57100, Thailand 3Botany and Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia 4Mushroom Research Foundation, 128 M.3 Ban Pa Deng T. Pa Pae, A. Mae Taeng, Chiang Mai 50150, Thailand * Correspondence to: [email protected] Abstract — Psilocybe deconicoides, P. cubensis, P. magnispora, P. samuiensis, and P. thailandensis (previously known from Thailand) are revisited, andP. thaiaerugineomaculans, P. thaicordispora, P. thaiduplicatocystidiata, and P. thaizapoteca are described as new species. These new species are bluing and belong to sectionsCordisporae , Stuntzae, and Zapotecorum. Following the recent conservation of Psilocybe as the generic name for bluing species, P. deconicoides, which does not blue upon bruising, is transferred to Deconica, while the bluing taxa P. cubensis (sect. Cubensae), P. magnispora and P. thailandensis (sect. Neocaledonicae), and P. samuiensis (sect. Mexicanae) remain in Psilocybe. Key words — hallucinogenic mushrooms, richness mycobiota, Strophariaceae, tropics Introduction The hallucinogenic fungal species in Thailand, as in most tropical countries, are poorly known, which is in direct contrast with the large fungal diversity that occurs throughout the tropics. Moreover, with considerable destruction of tropical habitats for use as agricultural or cattle farms, many species will likely disappear before being documented. -
Species of Peziza S. Str. on Water-Soaked Wood with Special Reference to a New Species, P
DOI 10.12905/0380.sydowia68-2016-0173 Species of Peziza s. str. on water-soaked wood with special reference to a new species, P. nordica, from central Norway Donald H. Pfister1, *, Katherine F. LoBuglio1 & Roy Kristiansen2 1 Department of Organismic and Evolutionary Biology, Harvard University Herbaria, 22 Divinity Ave., Cambridge, MA 02138, USA 2 PO Box 32, N-1650 Sellebakk, Norway * e-mail: [email protected] Pfister D.H., LoBuglio K.F. & Kristiansen R. (2016) Species ofPeziza s. str. on water-soaked wood with special reference to a new species, P. nordica, from central Norway. – Sydowia 68: 173–185. Peziza oliviae, P. lohjaoensis, P. montirivicola and a new species from Norway form a well-supported clade within the Peziza s. str. group based on study of the internal transcribed spacer + 5.8S rRNA gene, large subunit rRNA gene and the 6–7 region of the DNA-dependent RNA polymerase II gene. Like P. oliviae and P. montirivicola, the new species, P. nordica, is distinctly stipi- tate and occurs on wood that has been inundated by fresh water. These species also have paraphyses with yellow vacuolar inclu- sions. They fruit early in the season or at high elevations and are presumed to be saprobic. A discussion of application of the name Peziza is given. Keywords: Ascomycota, molecular phylogeny, Pezizales, taxonomy. The present work was begun to determine the Schwein.) Fr., Cudoniella clavus (Alb. & Schwein.) identity of a collection made by one of us (RK) in Dennis and frequently Scutellinia scutellata (L.) August 2014. This large, orange brown to brown, Lambotte.