Isolation and Characterization of Halophilic Bacteria Producing
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Halomonas Almeriensis Sp. Nov., a Moderately Halophilic, 1 Exopolysaccharide-Producing Bacterium from Cabo De Gata
1 Halomonas almeriensis sp. nov., a moderately halophilic, 2 exopolysaccharide-producing bacterium from Cabo de Gata (Almería, 3 south-east Spain). 4 5 Fernando Martínez-Checa, Victoria Béjar, M. José Martínez-Cánovas, 6 Inmaculada Llamas and Emilia Quesada. 7 8 Microbial Exopolysaccharide Research Group, Department of Microbiology, 9 Faculty of Pharmacy, University of Granada, Campus Universitario de Cartuja 10 s/n, 18071 Granada, Spain. 11 12 Running title: Halomonas almeriensis sp. nov. 13 14 Keywords: Halomonas; exopolysaccharides; halophilic bacteria; hypersaline 15 habitats. 16 17 Subject category: taxonomic note; new taxa; γ-Proteobacteria 18 19 Author for correspondence: 20 E. Quesada: 21 Tel: +34 958 243871 22 Fax: +34 958 246235 23 E-mail: [email protected] 24 25 26 The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene 27 sequence of strain M8T is AY858696. 28 29 30 31 32 33 34 1 Summary 2 3 Halomonas almeriensis sp. nov. is a Gram-negative non-motile rod isolated 4 from a saltern in the Cabo de Gata-Níjar wild-life reserve in Almería, south-east 5 Spain. It is moderately halophilic, capable of growing at concentrations of 5% to 6 25% w/v of sea-salt mixture, the optimum being 7.5% w/v. It is chemo- 7 organotrophic and strictly aerobic, produces catalase but not oxidase, does not 8 produce acid from any sugar and does not synthesize hydrolytic enzymes. The 9 most notable difference between this microorganism and other Halomonas 10 species is that it is very fastidious in its use of carbon source. It forms mucoid 11 colonies due to the production of an exopolysaccharide (EPS). -
Acid Degrading Bacteria from Sulfidic, Low Salinity Salt Springs Michael G
ISOLATION AND CHARACTERIZATION OF HALOTOLERANT 2,4- DICHLOROPHENOXYACETIC ACID DEGRADING BACTERIA FROM SULFIDIC, LOW SALINITY SALT SPRINGS MICHAEL G. WILLIS, DAVID S. TREVES* DEPARTMENT OF BIOLOGY, INDIANA UNIVERSITY SOUTHEAST, NEW ALBANY, IN MANUSCRIPT RECEIVED 30 APRIL, 2014; ACCEPTED 30 MAY, 2014 Copyright 2014, Fine Focus all rights reserved 40 • FINE FOCUS, VOL. 1 ABSTRACT The bacterial communities at two sulfdic, low salinity springs with no history of herbicide CORRESPONDING contamination were screened for their ability to AUTHOR grow on 2,4-dichlorophenoxyacetic acid (2,4-D). Nineteen isolates, closely matching the genera * David S. Treves Bacillus, Halobacillus, Halomonas, Georgenia and Department of Biology, Kocuria, showed diverse growth strategies on NaCl- Indiana University Southeast supplemented and NaCl-free 2,4-D medium. The 4201 Grant Line Road, New majority of isolates were halotolerant, growing best Albany, IN, 47150 on nutrient rich broth with 0% or 5% NaCl; none [email protected] of the isolates thrived in medium with 20% NaCl. Phone: 812-941-2129. The tfdA gene, which codes for an a – ketoglutarate dioxygenase and catalyzes the frst step in 2,4- D degradation, was detected in nine of the salt KEYWORDS spring isolates. The tfdAa gene, which shows ~60% identity to tfdA, was present in all nineteen • 2,4-D isolates. Many of the bacteria described here were • tfdA not previously associated with 2,4-D degradation • tfdAa suggesting these salt springs may contain microbial • salt springs communities of interest for bioremediation. • halotolerant bacteria INTRODUCTION Bacteria have tremendous potential to (B-Proteobacteria; formerly Ralstonia degrade organic compounds and study of eutropha) has received considerable the metabolic pathways involved is a key attention and serves as a model system for component to more effcient environmental microbial degradation (2, 3, 26). -
Quorum Sensing in Some Representative Species of Halomonadaceae
Life 2013, 3, 260-275; doi:10.3390/life3010260 OPEN ACCESS life ISSN 2075-1729 www.mdpi.com/journal/life Article Quorum Sensing in Some Representative Species of Halomonadaceae Ali Tahrioui 1, Melanie Schwab 1, Emilia Quesada 1,2 and Inmaculada Llamas 1,2,* 1 Department of Microbiology, Faculty of Pharmacy, University of Granada, Campus Universitario de Cartuja, 18071 Granada, Spain; E-Mails: [email protected] (A.T.); [email protected] (M.S.); [email protected] (E.Q.) 2 Biotechnology Research Institute, Polígono Universitario de Fuentenueva, University of Granada, 18071 Granada, Spain * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +34-958-243871; Fax: +34-958-246235. Received: 7 December 2012; in revised form: 18 January 2013 / Accepted: 22 February 2013 / Published: 5 March 2013 Abstract: Cell-to-cell communication, or quorum-sensing (QS), systems are employed by bacteria for promoting collective behaviour within a population. An analysis to detect QS signal molecules in 43 species of the Halomonadaceae family revealed that they produced N-acyl homoserine lactones (AHLs), which suggests that the QS system is widespread throughout this group of bacteria. Thin-layer chromatography (TLC) analysis of crude AHL extracts, using Agrobacterium tumefaciens NTL4 (pZLR4) as biosensor strain, resulted in different profiles, which were not related to the various habitats of the species in question. To confirm AHL production in the Halomonadaceae species, PCR and DNA sequencing approaches were used to study the distribution of the luxI-type synthase gene. Phylogenetic analysis using sequence data revealed that 29 of the species studied contained a LuxI homolog. -
Qinghai Lake
MIAMI UNIVERSITY The Graduate School CERTIFICATE FOR APPROVING THE DISSERTATION We hereby approve the Dissertation of Hongchen Jiang Candidate for the Degree Doctor of Philosophy ________________________________________________________ Dr. Hailiang Dong, Director ________________________________________________________ Dr. Chuanlun Zhang, Reader ________________________________________________________ Dr. Yildirim Dilek, Reader ________________________________________________________ Dr. Jonathan Levy, Reader ________________________________________________________ Dr. Q. Quinn Li, Graduate School Representative ABSTRACT GEOMICROBIOLOGICAL STUDIES OF SALINE LAKES ON THE TIBETAN PLATEAU, NW CHINA: LINKING GEOLOGICAL AND MICROBIAL PROCESSES By Hongchen Jiang Lakes constitute an important part of the global ecosystem as habitats in these environments play an important role in biogeochemical cycles of life-essential elements. The cycles of carbon, nitrogen and sulfur in these ecosystems are intimately linked to global phenomena such as climate change. Microorganisms are at the base of the food chain in these environments and drive the cycling of carbon and nitrogen in water columns and the sediments. Despite many studies on microbial ecology of lake ecosystems, significant gaps exist in our knowledge of how microbial and geological processes interact with each other. In this dissertation, I have studied the ecology and biogeochemistry of lakes on the Tibetan Plateau, NW China. The Tibetan lakes are pristine and stable with multiple environmental gradients (among which are salinity, pH, and ammonia concentration). These characteristics allow an assessment of mutual interactions of microorganisms and geochemical conditions in these lakes. Two lakes were chosen for this project: Lake Chaka and Qinghai Lake. These two lakes have contrasting salinity and pH: slightly saline (12 g/L) and alkaline (9.3) for Qinghai Lake and hypersaline (325 g/L) but neutral pH (7.4) for Chaka Lake. -
Recommended Minimal Standards for Describing New Taxa of the Family Halomonadaceae
International Journal of Systematic and Evolutionary Microbiology (2007), 57, 2436–2446 DOI 10.1099/ijs.0.65430-0 Recommended minimal standards for describing new taxa of the family Halomonadaceae David R. Arahal,1 Russell H. Vreeland,2 Carol D. Litchfield,3 Melanie R. Mormile,4 Brian J. Tindall,5 Aharon Oren,6 Victoria Bejar,7 Emilia Quesada7 and Antonio Ventosa8 Correspondence 1Spanish Type Culture Collection (CECT) and Department of Microbiology and Ecology, Antonio Ventosa University of Valencia, 46100 Valencia, Spain [email protected] 2Ancient Biomaterials Institute and Department of Biology, West Chester University, West Chester, PA 19383, USA 3Department of Environmental Science and Policy, George Mason University, Manassas, VA 20110, USA 4Department of Biological Sciences, University of Missouri-Rolla, Rolla, MO 65401, USA 5German Collection of Microorganisms and Cell Cultures (DSMZ), Inhoffenstrasse 7b, 38124 Braunschweig, Germany 6The Institute of Life Sciences and the Moshe Shilo Minerva Center for Marine Biogeochemistry, Hebrew University of Jerusalem, 91904 Jerusalem, Israel 7Department of Microbiology, Faculty of Pharmacy, University of Granada, 18071 Granada, Spain 8Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, 41012 Sevilla, Spain Following Recommendation 30b of the Bacteriological Code (1990 Revision), a proposal of minimal standards for describing new taxa within the family Halomonadaceae is presented. An effort has been made to evaluate as many different approaches as possible, not only the most conventional ones, to ensure that a rich polyphasic characterization is given. Comments are given on the advantages of each particular technique. The minimal standards are considered as guidelines for authors to prepare descriptions of novel taxa. -
Genome Analysis of a Halophilic Bacterium Halomonas Malpeensis YU‑PRIM‑29T Reveals Its Exopolysaccharide and Pigment Producing Capabilities Athmika1,2, Sudeep D
www.nature.com/scientificreports OPEN Genome analysis of a halophilic bacterium Halomonas malpeensis YU‑PRIM‑29T reveals its exopolysaccharide and pigment producing capabilities Athmika1,2, Sudeep D. Ghate1,2, A. B. Arun1, Sneha S. Rao1, S. T. Arun Kumar1, Mrudula Kinarulla Kandiyil1, Kanekar Saptami1 & P. D. Rekha1* Halomonas malpeensis strain YU‑PRIM‑29T is a yellow pigmented, exopolysaccharide (EPS) producing halophilic bacterium isolated from the coastal region. To understand the biosynthesis pathways involved in the EPS and pigment production, whole genome analysis was performed. The complete genome sequencing and the de novo assembly were carried out using Illumina sequencing and SPAdes genome assembler (ver 3.11.1) respectively followed by detailed genome annotation. The genome consists of 3,607,821 bp distributed in 18 contigs with 3337 protein coding genes and 53% of the annotated CDS are having putative functions. Gene annotation disclosed the presence of genes involved in ABC transporter‑dependent pathway of EPS biosynthesis. As the ABC transporter‑ dependent pathway is also implicated in the capsular polysaccharide (CPS) biosynthesis, we employed extraction protocols for both EPS (from the culture supernatants) and CPS (from the cells) and found that the secreted polysaccharide i.e., EPS was predominant. The EPS showed good emulsifying activities against the petroleum hydrocarbons and its production was dependent on the carbon source supplied. The genome analysis also revealed genes involved in industrially important metabolites such as zeaxanthin pigment, ectoine and polyhydroxyalkanoate (PHA) biosynthesis. To confrm the genome data, we extracted these metabolites from the cultures and successfully identifed them. The pigment extracted from the cells showed the distinct UV–Vis spectra having characteristic absorption peak of zeaxanthin (λmax 448 nm) with potent antioxidant activities. -
Halomonas Smyrnensis AAD6T Elif Diken1, Tugba Ozer1, Muzaffer Arikan2, Zeliha Emrence2, Ebru Toksoy Oner1, Duran Ustek3 and Kazim Yalcin Arga1*
Diken et al. SpringerPlus (2015) 4:393 DOI 10.1186/s40064-015-1184-3 RESEARCH Open Access Genomic analysis reveals the biotechnological and industrial potential of levan producing halophilic extremophile, Halomonas smyrnensis AAD6T Elif Diken1, Tugba Ozer1, Muzaffer Arikan2, Zeliha Emrence2, Ebru Toksoy Oner1, Duran Ustek3 and Kazim Yalcin Arga1* Abstract Halomonas smyrnensis AAD6T is a gram negative, aerobic, and moderately halophilic bacterium, and is known to pro- duce high levels of levan with many potential uses in foods, feeds, cosmetics, pharmaceutical and chemical industries due to its outstanding properties. Here, the whole-genome analysis was performed to gain more insight about the biological mechanisms, and the whole-genome organization of the bacterium. Industrially crucial genes, including the levansucrase, were detected and the genome-scale metabolic model of H. smyrnensis AAD6T was reconstructed. The bacterium was found to have many potential applications in biotechnology not only being a levan producer, but also because of its capacity to produce Pel exopolysaccharide, polyhydroxyalkanoates, and osmoprotectants. The genomic information presented here will not only provide additional information to enhance our understanding of the genetic and metabolic network of halophilic bacteria, but also accelerate the research on systematical design of engineering strategies for biotechnology applications. Keywords: Halomonas smyrnensis, Halophiles, Genome, Next-generation sequencing, Levan Background of levan, which is a long linear homopolymeric EPS of Halomonas smyrnensis AAD6T is a rod-shaped, Gram- ß(2-6)-linked fructose residues (Poli et al. 2009). Levan negative, aerobic, exopolysaccharide (EPS) producing and has been credited as one of the most promising polysac- moderately halophilic bacterium, growing at salt con- charides for foods, feeds, cosmetics, pharmaceutical and centration in the range of 3–25% (w/v) NaCl (optimum, chemical industries (Donot et al. -
Diversité Des Bactéries Halophiles Dans L'écosystème Fromager Et
Diversité des bactéries halophiles dans l'écosystème fromager et étude de leurs impacts fonctionnels Diversity of halophilic bacteria in the cheese ecosystem and the study of their functional impacts Thèse de doctorat de l'université Paris-Saclay École doctorale n° 581 Agriculture, Alimentation, Biologie, Environnement et Santé (ABIES) Spécialité de doctorat: Microbiologie Unité de Recherche : Micalis Institute, Jouy-en-Josas, France Référent : AgroParisTech Thèse présentée et soutenue à Paris-Saclay, le 01/04/2021 par Caroline Isabel KOTHE Composition du Jury Michel-Yves MISTOU Président Directeur de Recherche, INRAE centre IDF - Jouy-en-Josas - Antony Monique ZAGOREC Rapporteur & Examinatrice Directrice de Recherche, INRAE centre Pays de la Loire Nathalie DESMASURES Rapporteur & Examinatrice Professeure, Université de Caen Normandie Françoise IRLINGER Examinatrice Ingénieure de Recherche, INRAE centre IDF - Versailles-Grignon Jean-Louis HATTE Examinateur Ingénieur Recherche et Développement, Lactalis Direction de la thèse Pierre RENAULT Directeur de thèse Directeur de Recherche, INRAE (centre IDF - Jouy-en-Josas - Antony) 2021UPASB014 : NNT Thèse de doctorat de Thèse “A master in the art of living draws no sharp distinction between her work and her play; her labor and her leisure; her mind and her body; her education and her recreation. She hardly knows which is which. She simply pursues her vision of excellence through whatever she is doing, and leaves others to determine whether she is working or playing. To herself, she always appears to be doing both.” Adapted to Lawrence Pearsall Jacks REMERCIEMENTS Remerciements L'opportunité de faire un doctorat, en France, à l’Unité mixte de recherche MICALIS de Jouy-en-Josas a provoqué de nombreux changements dans ma vie : un autre pays, une autre langue, une autre culture et aussi, un nouveau domaine de recherche. -
Novel Haloalkaliphilic Methanotrophic Bacteria: an Attempt for Enhancing Methane Bio-Refinery
Elsevier Editorial System(tm) for Journal of Environmental Management Manuscript Draft Manuscript Number: Title: Novel haloalkaliphilic methanotrophic bacteria: An attempt for enhancing methane bio-refinery Article Type: Research Article Keywords: Alishewanella, CH4 biorefinery, Ectoine, Halomonas, Methane treatment. Corresponding Author: Mr. Raul Munoz, PhD Corresponding Author's Institution: Valladolid University First Author: Sara Cantera Order of Authors: Sara Cantera; Irene Sánchez-Andrea; Lidia J Sadornil; Pedro A Garcia-Encina; Alfons J.M Stams; Raul Munoz, PhD Abstract: Methane bioconversion into products with a high market value, such as ectoine or hydroxyectoine, can be optimized via isolation of more efficient novel methanotrophic bacteria. The research here presented focused on the enrichment of methanotrophic consortia able to co-produce different ectoines during CH4 biodegradation. Four different enrichments (Cow3, Slu3, Cow6 and Slu6) were carried out in basal media supplemented with 3 and 6 % NaCl, and using methane as the sole carbon and energy source. The highest ectoine accumulation (~20 mg ectoine g biomass-1) was recorded in the two consortia enriched at 6 % NaCl (Cow6 and Slu6). Moreover, hydroxyectoine was detected for the first time using methane as a feedstock in Cow6 and Slu6 (~5 mg g biomass-1). The majority of the haloalkaliphilic bacteria identified by 16S rRNA community profiling in both consortia have not been previously described as methanotrophs. From these enrichments, two novel strains (representing novel species) capable of using methane as the sole carbon and energy source were isolated: Alishewanella sp. strain RM1 and Halomonas sp. strain PGE1. Halomonas sp. strain PGE1 showed higher ectoine yields (70 - 92 mg ectoine g biomass-1) than those previously described for other methanotrophs under continuous cultivation mode (~37 - 70 mg ectoine g biomass-1). -
Conversion of Uric Acid Into Ammonium in Oil
1 Conversion of uric acid into ammonium in oil-degrading 2 marine microbial communities: a possible role of 3 halomonads 4 5 6 Christoph Gertler1, 11*, Rafael Bargiela2, Francesca Mapelli3, 10, Xifang Han4, Jianwei Chen4, Tran 7 Hai1, Ranya A. Amer5, Mouna Mahjoubi6, Hanan Malkawi7, Mirko Magagnini8, Ameur Cherif6, Yasser 8 R. Abdel-Fattah5, Nicolas Kalogerakis9, Daniele Daffonchio3,10, Manuel Ferrer2 and Peter N. Golyshin1 9 10 1 School of Biological Sciences, Environment Centre Wales, Bangor University, LL57 2UW Bangor, Gwynedd, UK 11 2 Consejo Superior de Investigaciones Científicas (CSIC), Institute of Catalysis, 28049 Madrid, Spain 12 3 Department of Food, Environment and Nutritional Sciences (DeFENS), University of Milan, via Celoria 2, 20133 Milan. Italy 13 4 BGI Tech Solutions Co., Ltd, Main Building, Beishan Industrial Zone, Yantian District, Shenzhen, 518083, China 14 5 Genetic Engineering and Biotechnology Research Institute, City for Scientific Research & Technology Applications, 15 Alexandria, Egypt 16 6 Highe Higher Institute for Biotechnology - University of Manouba; Biotechpole of Sidi Thabet, 2020, LR11ES31, Sidi Thabet, 17 Ariana, Tunisia 18 7 Deanship of Research & Doctoral Studies, Hamdan Bin Mohammad Smart University, Dubai-UAE 19 8 EcoTechSystems Ltd., Ancona, Italy 20 9 School of Environmental Engineering, Technical University of Crete, Chania, Greece 21 10 King Abdullah University of Science and Technology, BESE Division, Thuwal, 23955-6900, Kingdom of Saudi Arabia. 22 11 Friedrich-Loeffler-Institut - Federal research Institute for Animal Health, Institute of Novel and Emerging Diseases, Südufer 23 10, 17493 Greifswald-Insel Riems 24 25 26 *corresponding author; E-mail: [email protected] 27 28 29 Abstract 30 31 Uric acid is a promising hydrophobic nitrogen source for biostimulation of microbial 32 activities in oil-impacted marine environments. -
Physiological Features of Halomonas Lionensis Sp. Nov., a Novel Bacterium Isolated from a Mediterranean Sea Sediment
Research in Microbiology isher Web site Webisher Archimer September 2014, Volume 165, Issue 7, Pages 490–500 http://dx.doi.org/10.1016/j.resmic.2014.07.009 http://archimer.ifremer.fr © 2014 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved. Physiological features of Halomonas lionensis sp. nov., a novel is available on the publ the on available is bacterium isolated from a Mediterranean Sea sediment Frédéric Gaboyera, b, c, Odile Vandenabeele-Trambouzea, b, c, Junwei Caoa, b, c, Maria-Cristina Ciobanua, b, c, Mohamed Jebbara, b, c, Marc Le Romancera, b, c, Karine Alaina, b, c, * authenticated version authenticated - a Université de Bretagne Occidentale (UBO, UEB), Institut Universitaire Européen de la Mer (IUEM) – UMR 6197, Laboratoire de Microbiologie des Environnements Extrêmes (LMEE), rue Dumont d'Urville, F-29280 Plouzané, France b CNRS, IUEM – UMR 6197, Laboratoire de Microbiologie des Environnements Extrêmes (LMEE), rue Dumont d'Urville, F-29280 Plouzané, France c Ifremer, UMR6197, Laboratoire de Microbiologie des Environnements Extrêmes (LMEE), Technopôle Pointe du diable, F-29280 Plouzané, France *: Corresponding author : Karine Alain, tel.: +33 (0)2 98 49 88 53 ; fax: +33 (0)2 98 49 87 05 ; email address : [email protected] Abstract: A novel halophilic bacterium, strain RHS90T, was isolated from marine sediments from the Gulf of Lions, in the Mediterranean Sea. Its metabolic and physiological characteristics were examined under various cultural conditions, including exposure to stressful ones (oligotrophy, high pressure and high concentrations of metals). Based on phylogenetic analysis of the 16S rRNA gene, the strain was found to belong to the genus Halomonas in the class Gammaproteobacteria. -
Microbial Diversity of Saline Environments
Díaz‑Cárdenas et al. AMB Expr (2017) 7:223 https://doi.org/10.1186/s13568-017-0527-6 ORIGINAL ARTICLE Open Access Microbial diversity of saline environments: searching for cytotoxic activities Carolina Díaz‑Cárdenas1, Angela Cantillo2, Laura Yinneth Rojas3, Tito Sandoval3, Susana Fiorentino3, Jorge Robles4, Freddy A. Ramos5, María Mercedes Zambrano2 and Sandra Baena1* Abstract In order to select halophilic microorganisms as a source of compounds with cytotoxic activities, a total of 135 bacte‑ rial strains were isolated from water and sediment samples collected from the Zipaquirá salt mine in the Colombian Andes. We determined the cytotoxic efects of 100 crude extracts from 54 selected organisms on the adherent murine mammary cell carcinoma 4T1 and human mammary adenocarcinoma MCF-7 cell lines. These extracts were obtained from strains of Isoptericola, Ornithinimicrobium, Janibacter, Nesterenkonia, Alkalibacterium, Bacillus, Halomonas, Chromohalobacter, Shewanella, Salipiger, Martellela, Oceanibaculum, Caenispirillum and Labrenzia. The extracts of 23 1 strains showed an IC50 of less than 100 μg mL− . They were subsequently analyzed by LC/MS allowing dereplication of 20 compounds. The cytotoxic efect was related to a complex mixture of diketopiperazines present in many of the extracts analyzed. The greatest cytotoxic activity against both of the evaluated cell lines was obtained from the 1 chloroform extract of Labrenzia aggregata USBA 371 which had an IC50 < 6 μg mL− . Other extracts with high levels 1 of cytotoxic activity were obtained from Bacillus sp. (IC50 < 50 μg mL− ) which contained several compounds such as macrolactin L and A, 7-O-succinoylmacrolactin F and iturin. Shewanella chilikensis USBA 344 also showed high levels 1 of cytotoxic activity against both cell lines in the crude extract: an IC50 < 15 μg mL− against the 4T1 cell line and an 1 1 IC50 < 68 μg mL− against the MCF-7 cell line.