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Draft Risk Management Proposal, Partial Review of Malus Import
Risk Management Proposal: Partial review of Malus import requirements in the Importation of Nursery Stock Import Health Standard (155.02.06) FOR PUBLIC CONSULTATION November 2020 Plant Germplasm Imports Animal & Plant Health Directorate Ministry for Primary Industries Pastoral House 25 The Terrace PO Box 2526 Wellington 6140 New Zealand Tel: +64 4 894 0100 Email: [email protected] Table of Contents Page Submissions 1 Purpose 2 Objective 2 Background 2 Risk management approach 4 Proposed requirements for post entry quarantine 8 Appendix 1 14 i Submissions The Ministry for Primary Industries (MPI) invites comment from interested parties on proposed changes to import requirements in the Malus schedule in the import health standard (IHS) 155.02.061: Importation of Nursery Stock, which is supported by this risk management proposal. The purpose of an import health standard is defined as follows in section 22(1) of the Biosecurity Act 1993 (the Act): “An import health standard specifies requirements that must be met to effectively manage risks associated with importing risk goods, including risks arising because importing the goods involves or might involve an incidentally imported new organism”. In accordance with Section 23 of the Act, MPI must consult with interested parties before issuing or amending IHS under section 24A of the Act. Therefore, MPI therefore seeks formal comment on the proposed import requirements. The following points may be of assistance in preparing comments: • Wherever possible, comments should be specific to a particular section/requirement of the IHS; • Where possible, reasons, data and supporting published references to support comments are requested. • The use of examples to illustrate particular points is encouraged. -
A Five-Gene Phylogeny of Pezizomycotina
Mycologia, 98(6), 2006, pp. 1018–1028. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 A five-gene phylogeny of Pezizomycotina Joseph W. Spatafora1 Burkhard Bu¨del Gi-Ho Sung Alexandra Rauhut Desiree Johnson Department of Biology, University of Kaiserslautern, Cedar Hesse Kaiserslautern, Germany Benjamin O’Rourke David Hewitt Maryna Serdani Harvard University Herbaria, Harvard University, Robert Spotts Cambridge, Massachusetts 02138 Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331 Wendy A. Untereiner Department of Botany, Brandon University, Brandon, Franc¸ois Lutzoni Manitoba, Canada Vale´rie Hofstetter Jolanta Miadlikowska Mariette S. Cole Vale´rie Reeb 2017 Thure Avenue, St Paul, Minnesota 55116 Ce´cile Gueidan Christoph Scheidegger Emily Fraker Swiss Federal Institute for Forest, Snow and Landscape Department of Biology, Duke University, Box 90338, Research, WSL Zu¨ rcherstr. 111CH-8903 Birmensdorf, Durham, North Carolina 27708 Switzerland Thorsten Lumbsch Matthias Schultz Robert Lu¨cking Biozentrum Klein Flottbek und Botanischer Garten der Imke Schmitt Universita¨t Hamburg, Systematik der Pflanzen Ohnhorststr. 18, D-22609 Hamburg, Germany Kentaro Hosaka Department of Botany, Field Museum of Natural Harrie Sipman History, Chicago, Illinois 60605 Botanischer Garten und Botanisches Museum Berlin- Dahlem, Freie Universita¨t Berlin, Ko¨nigin-Luise-Straße Andre´ Aptroot 6-8, D-14195 Berlin, Germany ABL Herbarium, G.V.D. Veenstraat 107, NL-3762 XK Soest, The Netherlands Conrad L. Schoch Department of Botany and Plant Pathology, Oregon Claude Roux State University, Corvallis, Oregon 97331 Chemin des Vignes vieilles, FR - 84120 MIRABEAU, France Andrew N. Miller Abstract: Pezizomycotina is the largest subphylum of Illinois Natural History Survey, Center for Biodiversity, Ascomycota and includes the vast majority of filamen- Champaign, Illinois 61820 tous, ascoma-producing species. -
(US) 38E.85. a 38E SEE", A
USOO957398OB2 (12) United States Patent (10) Patent No.: US 9,573,980 B2 Thompson et al. (45) Date of Patent: Feb. 21, 2017 (54) FUSION PROTEINS AND METHODS FOR 7.919,678 B2 4/2011 Mironov STIMULATING PLANT GROWTH, 88: R: g: Ei. al. 1 PROTECTING PLANTS FROM PATHOGENS, 3:42: ... g3 is et al. A61K 39.00 AND MMOBILIZING BACILLUS SPORES 2003/0228679 A1 12.2003 Smith et al." ON PLANT ROOTS 2004/OO77090 A1 4/2004 Short 2010/0205690 A1 8/2010 Blä sing et al. (71) Applicant: Spogen Biotech Inc., Columbia, MO 2010/0233.124 Al 9, 2010 Stewart et al. (US) 38E.85. A 38E SEE",teWart et aal. (72) Inventors: Brian Thompson, Columbia, MO (US); 5,3542011/0321197 AllA. '55.12/2011 SE",Schön et al.i. Katie Thompson, Columbia, MO (US) 2012fO259101 A1 10, 2012 Tan et al. 2012fO266327 A1 10, 2012 Sanz Molinero et al. (73) Assignee: Spogen Biotech Inc., Columbia, MO 2014/0259225 A1 9, 2014 Frank et al. US (US) FOREIGN PATENT DOCUMENTS (*) Notice: Subject to any disclaimer, the term of this CA 2146822 A1 10, 1995 patent is extended or adjusted under 35 EP O 792 363 B1 12/2003 U.S.C. 154(b) by 0 days. EP 1590466 B1 9, 2010 EP 2069504 B1 6, 2015 (21) Appl. No.: 14/213,525 WO O2/OO232 A2 1/2002 WO O306684.6 A1 8, 2003 1-1. WO 2005/028654 A1 3/2005 (22) Filed: Mar. 14, 2014 WO 2006/O12366 A2 2/2006 O O WO 2007/078127 A1 7/2007 (65) Prior Publication Data WO 2007/086898 A2 8, 2007 WO 2009037329 A2 3, 2009 US 2014/0274707 A1 Sep. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes of Eastern Canada by Joey B. Tanney A thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Carleton University Ottawa, Ontario © 2016 Abstract Research interest in endophytic fungi has increased substantially, yet is the current research paradigm capable of addressing fundamental taxonomic questions? More than half of the ca. 30,000 endophyte sequences accessioned into GenBank are unidentified to the family rank and this disparity grows every year. The problems with identifying endophytes are a lack of taxonomically informative morphological characters in vitro and a paucity of relevant DNA reference sequences. A study involving ca. 2,600 Picea endophyte cultures from the Acadian Forest Region in Eastern Canada sought to address these taxonomic issues with a combined approach involving molecular methods, classical taxonomy, and field work. It was hypothesized that foliar endophytes have complex life histories involving saprotrophic reproductive stages associated with the host foliage, alternative host substrates, or alternate hosts. Based on inferences from phylogenetic data, new field collections or herbarium specimens were sought to connect unidentifiable endophytes with identifiable material. Approximately 40 endophytes were connected with identifiable material, which resulted in the description of four novel genera and 21 novel species and substantial progress in endophyte taxonomy. Endophytes were connected with saprotrophs and exhibited reproductive stages on non-foliar tissues or different hosts. These results provide support for the foraging ascomycete hypothesis, postulating that for some fungi endophytism is a secondary life history strategy that facilitates persistence and dispersal in the absence of a primary host. -
Shifts in Diversification Rates and Host Jump Frequencies Shaped the Diversity of Host Range Among Sclerotiniaceae Fungal Plant Pathogens
Original citation: Navaud, Olivier, Barbacci, Adelin, Taylor, Andrew, Clarkson, John P. and Raffaele, Sylvain (2018) Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens. Molecular Ecology . doi:10.1111/mec.14523 Permanent WRAP URL: http://wrap.warwick.ac.uk/100464 Copyright and reuse: The Warwick Research Archive Portal (WRAP) makes this work of researchers of the University of Warwick available open access under the following conditions. This article is made available under the Creative Commons Attribution 4.0 International license (CC BY 4.0) and may be reused according to the conditions of the license. For more details see: http://creativecommons.org/licenses/by/4.0/ A note on versions: The version presented in WRAP is the published version, or, version of record, and may be cited as it appears here. For more information, please contact the WRAP Team at: [email protected] warwick.ac.uk/lib-publications Received: 30 May 2017 | Revised: 26 January 2018 | Accepted: 29 January 2018 DOI: 10.1111/mec.14523 ORIGINAL ARTICLE Shifts in diversification rates and host jump frequencies shaped the diversity of host range among Sclerotiniaceae fungal plant pathogens Olivier Navaud1 | Adelin Barbacci1 | Andrew Taylor2 | John P. Clarkson2 | Sylvain Raffaele1 1LIPM, Universite de Toulouse, INRA, CNRS, Castanet-Tolosan, France Abstract 2Warwick Crop Centre, School of Life The range of hosts that a parasite can infect in nature is a trait determined by its Sciences, University of Warwick, Coventry, own evolutionary history and that of its potential hosts. However, knowledge on UK host range diversity and evolution at the family level is often lacking. -
REPORT on APPLES – Fruit Pathway and Alert List
EU project number 613678 Strategies to develop effective, innovative and practical approaches to protect major European fruit crops from pests and pathogens Work package 1. Pathways of introduction of fruit pests and pathogens Deliverable 1.3. PART 5 - REPORT on APPLES – Fruit pathway and Alert List Partners involved: EPPO (Grousset F, Petter F, Suffert M) and JKI (Steffen K, Wilstermann A, Schrader G). This document should be cited as ‘Wistermann A, Steffen K, Grousset F, Petter F, Schrader G, Suffert M (2016) DROPSA Deliverable 1.3 Report for Apples – Fruit pathway and Alert List’. An Excel file containing supporting information is available at https://upload.eppo.int/download/107o25ccc1b2c DROPSA is funded by the European Union’s Seventh Framework Programme for research, technological development and demonstration (grant agreement no. 613678). www.dropsaproject.eu [email protected] DROPSA DELIVERABLE REPORT on Apples – Fruit pathway and Alert List 1. Introduction ................................................................................................................................................... 3 1.1 Background on apple .................................................................................................................................... 3 1.2 Data on production and trade of apple fruit ................................................................................................... 3 1.3 Pathway ‘apple fruit’ ..................................................................................................................................... -
An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Monika KOZŁOWSKA, Wiesław MUŁENKO Marcin ANUSIEWICZ, Magda MAMCZARZ
An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Fungal Biota of the An Annotated Catalogue of the Monika KOZŁOWSKA, Wiesław MUŁENKO Marcin ANUSIEWICZ, Magda MAMCZARZ An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Richness, Diversity and Distribution MARIA CURIE-SkłODOWSKA UNIVERSITY PRESS POLISH BOTANICAL SOCIETY Grzyby_okladka.indd 6 11.02.2019 14:52:24 An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Richness, Diversity and Distribution Monika KOZŁOWSKA, Wiesław MUŁENKO Marcin ANUSIEWICZ, Magda MAMCZARZ An Annotated Catalogue of the Fungal Biota of the Roztocze Upland Richness, Diversity and Distribution MARIA CURIE-SkłODOWSKA UNIVERSITY PRESS POLISH BOTANICAL SOCIETY LUBLIN 2019 REVIEWER Dr hab. Małgorzata Ruszkiewicz-Michalska COVER DESIN, TYPESETTING Studio Format © Te Authors, 2019 © Maria Curie-Skłodowska University Press, Lublin 2019 ISBN 978-83-227-9164-6 ISBN 978-83-950171-8-6 ISBN 978-83-950171-9-3 (online) PUBLISHER Polish Botanical Society Al. Ujazdowskie 4, 00-478 Warsaw, Poland pbsociety.org.pl Maria Curie-Skłodowska University Press 20-031 Lublin, ul. Idziego Radziszewskiego 11 tel. (81) 537 53 04 wydawnictwo.umcs.eu [email protected] Sales Department tel. / fax (81) 537 53 02 Internet bookshop: wydawnictwo.umcs.eu [email protected] PRINTED IN POLAND, by „Elpil”, ul. Artyleryjska 11, 08-110 Siedlce AUTHOR’S AFFILIATION Department of Botany and Mycology, Maria Curie-Skłodowska University, Lublin Monika Kozłowska, [email protected]; Wiesław -
Fungal Endophytes in a Seed-Free Host: New Species That Demonstrate Unique Community Dynamics
Portland State University PDXScholar Dissertations and Theses Dissertations and Theses Spring 5-23-2018 Fungal Endophytes in a Seed-Free Host: New Species that Demonstrate Unique Community Dynamics Brett Steven Younginger Portland State University Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Biology Commons, and the Fungi Commons Let us know how access to this document benefits ou.y Recommended Citation Younginger, Brett Steven, "Fungal Endophytes in a Seed-Free Host: New Species that Demonstrate Unique Community Dynamics" (2018). Dissertations and Theses. Paper 4387. https://doi.org/10.15760/etd.6271 This Dissertation is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. Please contact us if we can make this document more accessible: [email protected]. Fungal Endophytes in a Seed-Free Host: New Species That Demonstrate Unique Community Dynamics by Brett Steven Younginger A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Dissertation Committee: Daniel J. Ballhorn, Chair Mitchell B. Cruzan Todd N. Rosenstiel John G. Bishop Catherine E. de Rivera Portland State University 2018 © 2018 Brett Steven Younginger Abstract Fungal endophytes are highly diverse, cryptic plant endosymbionts that form asymptomatic infections within host tissue. They represent a large fraction of the millions of undescribed fungal taxa on our planet with some demonstrating mutualistic benefits to their hosts including herbivore and pathogen defense and abiotic stress tolerance. Other endophytes are latent saprotrophs or pathogens, awaiting host plant senescence to begin alternative stages of their life cycles. -
Phylogeny of Cyttaria Inferred from Nuclear and Mitochondrial Sequence and Morphological Data
Phylogeny of Cyttaria inferred from nuclear and mitochondrial sequence and morphological data The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Peterson, K. R., and D. H. Pfister. 2010. Phylogeny of Cyttaria Inferred from Nuclear and Mitochondrial Sequence and Morphological Data. Mycologia 102, no. 6: 1398–1416. doi:10.3852/10-046. Published Version doi:10.3852/10-046 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:30168159 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Mycologia, 102(6), 2010, pp. 1398–1416. DOI: 10.3852/10-046 # 2010 by The Mycological Society of America, Lawrence, KS 66044-8897 Phylogeny of Cyttaria inferred from nuclear and mitochondrial sequence and morphological data Kristin R. Peterson1 sort into clades according to their associations with Donald H. Pfister subgenera Lophozonia and Nothofagus. Department of Organismic and Evolutionary Biology, Key words: Encoelioideae, Leotiomycetes, Notho- Harvard University, 22 Divinity Avenue, Cambridge, fagus, southern hemisphere Massachusetts 02138 INTRODUCTION Abstract: Cyttaria species (Leotiomycetes, Cyttar- Species belonging to Cyttaria (Leotiomycetes, Cyttar- iales) are obligate, biotrophic associates of Nothofagus iales) have interested evolutionary biologists since (Hamamelididae, Nothofagaceae), the southern Darwin (1839), who collected on his Beagle voyage beech. As such Cyttaria species are restricted to the their spherical, honeycombed fruit bodies in south- southern hemisphere, inhabiting southern South ern South America (FIG. -
Black Soldier Fly Larvae As Value-Added Feed for Aquaculture in Maine Joshua Villazana University of Maine, [email protected]
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library Winter 12-14-2018 Black Soldier Fly Larvae as Value-Added Feed for Aquaculture in Maine Joshua Villazana University of Maine, [email protected] Follow this and additional works at: https://digitalcommons.library.umaine.edu/etd Part of the Aquaculture and Fisheries Commons, and the Entomology Commons Recommended Citation Villazana, Joshua, "Black Soldier Fly Larvae as Value-Added Feed for Aquaculture in Maine" (2018). Electronic Theses and Dissertations. 2932. https://digitalcommons.library.umaine.edu/etd/2932 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. BLACK SOLDIER FLY LARVAE AS VALUE-ADDED FEED FOR AQUACULTURE IN MAINE By Joshua Villazana B.A. University of Texas at Brownsville, 2013 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Entomology) The Graduate School The University of Maine December 2018 Advisory Committee: Andrei Alyokhin, Professor of Applied Entomology, Advisor Allison Gardner, Assistant Professor of Arthropod Vector Biology Edward Bernard, Lecturer of Microbiology © 2018 Joshua Villazana All Rights Reserved ii BLACK SOLDIER FLY LARVAE AS VALUE-ADDED FEED FOR AQUACULTURE IN MAINE By Joshua Villazana Thesis Advisor: Dr. Andrei Alyokhin An Abstract of the Thesis Presented in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Entomology) December 2018 Black soldier flies (BSF), Hermetia illucens (Linnaeus) (Diptera: Stratiomyidae) consume decaying organic waste as larvae (BSFL) and can be used for recycling a variety of biogenic wastes. -
1 Shifts in Diversification Rates and Host Jump Frequencies Shaped the Diversity of Host Range Among 1 Sclerotiniaceae Fungal Pl
bioRxiv preprint doi: https://doi.org/10.1101/229930; this version posted December 6, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Shifts in diversification rates and host jump frequencies shaped the diversity of host range among 2 Sclerotiniaceae fungal plant pathogens 3 Olivier Navaud1, Adelin Barbacci1, Andrew Taylor2, John P. Clarkson2, Sylvain Raffaele1* 4 5 1 LIPM, Université de Toulouse, INRA, CNRS, Castanet‐Tolosan, France 6 2 Warwick Crop Centre, School of Life Sciences, University of Warwick, Wellesbourne, Warwick CV35 7 9EF, UK 8 9 * Correspondence: [email protected] 10 11 12 13 14 1 bioRxiv preprint doi: https://doi.org/10.1101/229930; this version posted December 6, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 15 Abstract 16 The range of hosts that a parasite can infect in nature is a trait determined by its own evolutionary 17 history and that of its potential hosts. However, knowledge on host range diversity and evolution at 18 the family level is often lacking. Here, we investigate host range variation and diversification trends 19 within the Sclerotiniaceae, a family of Ascomycete fungi. Using a phylogenetic framework, we 20 associate diversification rates, the frequency of host jump events, and host range variation during the 21 evolution of this family.