Adenine-Based Purines and Related Metabolizing Enzymes: Evidence for Their Impact on Tumor Extracellular Vesicle Activities
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REDUCTION of PURINE CONTENT in COMMONLY CONSUMED MEAT PRODUCTS THROUGH RINSING and COOKING by Anna Ellington (Under the Directio
REDUCTION OF PURINE CONTENT IN COMMONLY CONSUMED MEAT PRODUCTS THROUGH RINSING AND COOKING by Anna Ellington (Under the direction of Yen-Con Hung) Abstract The commonly consumed meat products ground beef, ground turkey, and bacon were analyzed for purine content before and after a rinsing treatment. The rinsing treatment involved rinsing the meat samples using a wrist shaker in 5:1 ratio water: sample for 2 or 5 minutes then draining or centrifuging to remove water. The total purine content of 25% fat ground beef significantly decreased (p<0.05) from 8.58 mg/g protein to a range of 5.17-7.26 mg/g protein after rinsing treatments. After rinsing and cooking an even greater decrease was seen ranging from 4.59-6.32 mg/g protein. The total purine content of 7% fat ground beef significantly decreased from 7.80 mg/g protein to a range of 5.07-5.59 mg/g protein after rinsing treatments. A greater reduction was seen after rinsing and cooking in the range of 4.38-5.52 mg/g protein. Ground turkey samples showed no significant changes after rinsing, but significant decreases were seen after rinsing and cooking. Bacon samples showed significant decreases from 6.06 mg/g protein to 4.72 and 4.49 after 2 and 5 minute rinsing and to 4.53 and 4.68 mg/g protein after 2 and 5 minute rinsing and cooking. Overall, this study showed that rinsing foods in water effectively reduces total purine content and subsequent cooking after rinsing results in an even greater reduction of total purine content. -
Caveolin-1 Selectively Regulates Microrna Sorting Into Microvesicles After Noxious Stimuli
Published Online: 24 June, 2019 | Supp Info: http://doi.org/10.1084/jem.20182313 Downloaded from jem.rupress.org on October 1, 2019 ARTICLE Caveolin-1 selectively regulates microRNA sorting into microvesicles after noxious stimuli Heedoo Lee1, Chunhua Li2, Yang Zhang2, Duo Zhang1, Leo E. Otterbein3, and Yang Jin1 Emerging evidence suggests that extracellular vesicle (EV)–containing miRNAs mediate intercellular communications in response to noxious stimuli. It remains unclear how a cell selectively sorts the cellular miRNAs into EVs. We report that caveolin-1 (cav-1) is essential for sorting of selected miRNAs into microvesicles (MVs), a main type of EVs generated by outward budding of the plasma membrane. We found that cav-1 tyrosine 14 (Y14)–phosphorylation leads to interactions between cav-1 and hnRNPA2B1, an RNA-binding protein. The cav-1/hnRNPA2B1 complex subsequently traffics together into MVs. Oxidative stress induces O-GlcNAcylation of hnRNPA2B1, resulting in a robustly altered hnRNPA2B1-bound miRNA repertoire. Notably, cav-1 pY14 also promotes hnRNPA2B1 O-GlcNAcylation. Functionally, macrophages serve as the principal recipient of epithelial MVs in the lung. MV-containing cav-1/hnRNPA2B1 complex-bound miR-17/93 activate tissue macrophages. Collectively, cav-1 is the first identified membranous protein that directly guides RNA-binding protein into EVs. Our work delineates a novel mechanism by which oxidative stress compels epithelial cells to package and secrete specific miRNAs and elicits an innate immune response. Introduction Extracellular vesicles (EVs) have been shown to transfer func- This process involves an ATP-dependent, active sorting mech- tional miRNAs to neighboring or distant recipient cells as a rapid anism (Xu et al., 2013) and involves RNA-binding proteins that modality by which to manipulate gene expression in the recip- are enriched in EVs (Laffont et al., 2013; Villarroya-Beltri et al., ient cells (Phinney et al., 2015; Shipman, 2015). -
Exosomes Or Microvesicles, a Secreted Subcellular Organelle Contributing to Inflammation and Diabetes
2154 Diabetes Volume 67, November 2018 Exosomes or Microvesicles, a Secreted Subcellular Organelle Contributing to Inflammation and Diabetes Yang D. Dai1,2 and Peter Dias1 Diabetes 2018;67:2154–2156 | https://doi.org/10.2337/dbi18-0021 Type 1 and type 2 diabetes (T1D and T2D) are generally etc., represent a pool of mixed EVs, with each subspecies recognized as distinct disease entities based on the mech- having a different cargo and function. The cargo of the EVs anism of induction of disease: T1D results from low or no contains important complex molecules such as RNA, DNA, insulin production due to the gradual loss of cells that proteins, lipids, and carbohydrates. The ratio of each sub- produce insulin, whereas T2D is generally thought to occur species and their molecular content may vary depending on as a result of the body’s development of resistance to the physiological/pathological status of the parent cells and insulin. Although the events initiating T1D and T2D might tissues that release the EVs. Thus, EVs may potentially be be very different, the progression to diabetes and compli- a powerful source for noninvasive diagnosis of diseases (10). cations are similar and involve interactions between the The study by Freeman et al. (11) in this issue of immune system and the metabolic system. Notably, chronic Diabetes is unique in that it uses an ex vivo approach to inflammation is a shared manifestation of the two types study the role and mechanism of action of EVs derived of diabetes (1,2). Recently, secreted microvesicles, particu- from blood plasma of normal patients, patients with pre- larly exosomes, were suggested to be intermediates linking diabetes, and patients with diabetes in the development of inflammation to diabetes (3). -
Cyclic Nucleotide Phosphodiesterases in Heart and Vessels
Cyclic nucleotide phosphodiesterases in heart and vessels: A therapeutic perspective Pierre Bobin, Milia Belacel-Ouari, Ibrahim Bedioune, Liang Zhang, Jérôme Leroy, Véronique Leblais, Rodolphe Fischmeister, Grégoire Vandecasteele To cite this version: Pierre Bobin, Milia Belacel-Ouari, Ibrahim Bedioune, Liang Zhang, Jérôme Leroy, et al.. Cyclic nucleotide phosphodiesterases in heart and vessels: A therapeutic perspective. Archives of cardiovascular diseases, Elsevier/French Society of Cardiology, 2016, 109 (6-7), pp.431-443. 10.1016/j.acvd.2016.02.004. hal-02482730 HAL Id: hal-02482730 https://hal.archives-ouvertes.fr/hal-02482730 Submitted on 23 Mar 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Cyclic nucleotide phosphodiesterases in heart and vessels: A therapeutic perspective Abbreviated title: Cyclic nucleotide phosphodiesterases in heart and vessels French title: Phosphodiestérases des nucléotides cycliques dans le cœur et les vaisseaux : une perspective thérapeutique. Pierre Bobin, Milia Belacel-Ouari, Ibrahim Bedioune, Liang Zhang, Jérôme Leroy, Véronique Leblais, Rodolphe Fischmeister*, Grégoire Vandecasteele* UMR-S 1180, INSERM, Université Paris-Sud, Université Paris-Saclay, Châtenay-Malabry, France * Corresponding authors. UMR-S1180, Faculté de Pharmacie, Université Paris-Sud, 5 rue J.-B. Clément, F-92296 Châtenay-Malabry Cedex, France. -
Questions with Answers- Nucleotides & Nucleic Acids A. the Components
Questions with Answers- Nucleotides & Nucleic Acids A. The components and structures of common nucleotides are compared. (Questions 1-5) 1._____ Which structural feature is shared by both uracil and thymine? a) Both contain two keto groups. b) Both contain one methyl group. c) Both contain a five-membered ring. d) Both contain three nitrogen atoms. 2._____ Which component is found in both adenosine and deoxycytidine? a) Both contain a pyranose. b) Both contain a 1,1’-N-glycosidic bond. c) Both contain a pyrimidine. d) Both contain a 3’-OH group. 3._____ Which property is shared by both GDP and AMP? a) Both contain the same charge at neutral pH. b) Both contain the same number of phosphate groups. c) Both contain the same purine. d) Both contain the same furanose. 4._____ Which characteristic is shared by purines and pyrimidines? a) Both contain two heterocyclic rings with aromatic character. b) Both can form multiple non-covalent hydrogen bonds. c) Both exist in planar configurations with a hemiacetal linkage. d) Both exist as neutral zwitterions under cellular conditions. 5._____ Which property is found in nucleosides and nucleotides? a) Both contain a nitrogenous base, a pentose, and at least one phosphate group. b) Both contain a covalent phosphodister bond that is broken in strong acid. c) Both contain an anomeric carbon atom that is part of a β-N-glycosidic bond. d) Both contain an aldose with hydroxyl groups that can tautomerize. ___________________________________________________________________________ B. The structures of nucleotides and their components are studied. (Questions 6-10) 6._____ Which characteristic is shared by both adenine and cytosine? a) Both contain one methyl group. -
Thymine, Uracil and Adenine 21
CHAPTER 4: THYMINE, URACIL AND ADENINE 21 CHAPTER 4: THYMINE, URACIL AND ADENINE 22 CHAPTER 4: THYMINE, URACIL AND ADENINE 4.1 THYMINE Not only the pyrimidines present in the nucleic acids (cytosine, uracil and thymine) but also a great number of other pyrimidine derivatives play a vital role in many biological processes. In most biological systems vitamin B1 (derivative of 2-methyl-4- aminopyrimidine) occurs as its coenzyme, the specie that functions in biological systems [106]. Another pyrimidine alloxan was intensively studied [64,65] due to cause diabetes when administrated in laboratory animals. A number of pyrimidines derivatives are antimetabolites, been of clinical interest in cancer chemotherapy. 4.1.1 TAUTOMERISM AND PK VALUE Thymine exists in two tautomeric forms the keto and the enol form, where the keto form is strongly favored in the equilibrium. O OH H C H C 3 4 3 5 3NH N 6 2 1 N O N OH H Keto Enol Figure 4.1: Tautomeric forms for thymine. At alkaline pH the hydrogen N(3) for thymine is removed, indicating the weak basicity of the ring nitrogen. CHAPTER 4: THYMINE, URACIL AND ADENINE 23 O O H3C H3C 4 pKa=9.5 4 - 5 N 5 3NH 3 2 6 2 6 1 1 N O N O H H Figure 4.2: Ionization constant for thymine. Arrow indicates the dipole moment. 4.1.2 ADSORPTION OF THYMINE ON AU(111) AND AU POLYCRISTALLINE The adsorption of pyrimidines (uracil, thymine, and cytosine) on electrode surfaces had been carefully investigated in many studies in the recent years [24,51,52,54-56]. -
Lung Epithelial Cell–Derived Microvesicles Regulate Macrophage Migration Via Microrna-17/221–Induced Integrin B1 Recycling
Lung Epithelial Cell−Derived Microvesicles Regulate Macrophage Migration via MicroRNA-17/221−Induced Integrin β1 Recycling This information is current as of September 26, 2021. Heedoo Lee, Duo Zhang, Jingxuan Wu, Leo E. Otterbein and Yang Jin J Immunol published online 3 July 2017 http://www.jimmunol.org/content/early/2017/07/01/jimmun ol.1700165 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2017/07/01/jimmunol.170016 Material 5.DCSupplemental http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 26, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2017 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. Published July 3, 2017, doi:10.4049/jimmunol.1700165 The Journal of Immunology Lung Epithelial Cell–Derived Microvesicles Regulate Macrophage Migration via MicroRNA-17/221–Induced Integrin b1 Recycling Heedoo Lee,* Duo Zhang,* Jingxuan Wu,* Leo E. Otterbein,† and Yang Jin* Robust lung inflammation is one of the prominent features in the pathogenesis of acute lung injury (ALI). -
Emerging Role of Extracellular Vesicles in the Pathophysiology of Multiple Sclerosis
International Journal of Molecular Sciences Review Emerging Role of Extracellular Vesicles in the Pathophysiology of Multiple Sclerosis 1, 1, 1,2, 1 Ettore Dolcetti y, Antonio Bruno y , Livia Guadalupi y, Francesca Romana Rizzo , Alessandra Musella 2,3, Antonietta Gentile 2, Francesca De Vito 4, Silvia Caioli 4, Silvia Bullitta 1,2, Diego Fresegna 2, Valentina Vanni 1,2, Sara Balletta 1, Krizia Sanna 1, Fabio Buttari 4, Mario Stampanoni Bassi 4 , Diego Centonze 1,4,* and Georgia Mandolesi 2,3 1 Synaptic Immunopathology Lab, Department of Systems Medicine, Tor Vergata University, 00133 Rome, Italy; [email protected] (E.D.); [email protected] (A.B.); [email protected] (L.G.); [email protected] (F.R.R.); [email protected] (S.B.); [email protected] (V.V.); [email protected] (S.B.); [email protected] (K.S.) 2 Synaptic Immunopathology Lab, IRCCS San Raffaele Pisana, 00163 Rome, Italy; [email protected] (A.M.); [email protected] (A.G.); [email protected] (D.F.); [email protected] (G.M.) 3 Department of Human Sciences and Quality of Life Promotion, University of Rome San Raffaele, 00163 Rome, Italy 4 Unit of Neurology, IRCCS Neuromed, Pozzilli (Is), 86077 Pozzilli, Italy; [email protected] (F.D.V.); [email protected] (S.C.); [email protected] (F.B.); [email protected] (M.S.B.) * Correspondence: [email protected]; Tel.:+39-06 7259-6010; Fax: +39-06-7259-6006 Co-first authors. y Received: 30 August 2020; Accepted: 1 October 2020; Published: 4 October 2020 Abstract: Extracellular vesicles (EVs) represent a new reality for many physiological and pathological functions as an alternative mode of intercellular communication. -
Nucleobases Thin Films Deposited on Nanostructured Transparent Conductive Electrodes for Optoelectronic Applications
www.nature.com/scientificreports OPEN Nucleobases thin flms deposited on nanostructured transparent conductive electrodes for optoelectronic applications C. Breazu1*, M. Socol1, N. Preda1, O. Rasoga1, A. Costas1, G. Socol2, G. Petre1,3 & A. Stanculescu1* Environmentally-friendly bio-organic materials have become the centre of recent developments in organic electronics, while a suitable interfacial modifcation is a prerequisite for future applications. In the context of researches on low cost and biodegradable resource for optoelectronics applications, the infuence of a 2D nanostructured transparent conductive electrode on the morphological, structural, optical and electrical properties of nucleobases (adenine, guanine, cytosine, thymine and uracil) thin flms obtained by thermal evaporation was analysed. The 2D array of nanostructures has been developed in a polymeric layer on glass substrate using a high throughput and low cost technique, UV-Nanoimprint Lithography. The indium tin oxide electrode was grown on both nanostructured and fat substrate and the properties of the heterostructures built on these two types of electrodes were analysed by comparison. We report that the organic-electrode interface modifcation by nano- patterning afects both the optical (transmission and emission) properties by multiple refections on the walls of nanostructures and the electrical properties by the efect on the organic/electrode contact area and charge carrier pathway through electrodes. These results encourage the potential application of the nucleobases thin flms deposited on nanostructured conductive electrode in green optoelectronic devices. Te use of natural or nature-inspired materials in organic electronics is a dynamic emerging research feld which aims to replace the synthesized materials with natural (bio) ones in organic electronics1–3. -
Increased Excretion of Modified Adenine Nucleosides by Children with Adenosine Dearninase Deficiency
Pediatr. Res. 16: 362-369 (1982) Increased Excretion of Modified Adenine Nucleosides by Children with Adenosine Dearninase Deficiency ROCHELLE HIRSCHHORN,'"~ HOWARD RATECH, ARYE RUBINSTEIN, PHOTINI PAPAGEORGIOU, HERNANT KESARWALA, ERWIN GELFAND, AND VIVIEN ROEGNER-MANISCALCO Departments of Medicine and Pathology, New York University School of Medicine, New York, New York [R.H., H.R., and V.R.-M.];Department of Pediatrics, Albert Einstein College of Medicine, Bronx, New York [A.R.]; Department of Pediatrics, Rutgers University Medical ~chool,Piscataway, New Jersey [P.P., and H.K.]; and Department of Pediatrics, Hospital for Sick Children, Toronto, Ontario, Canada [E. G.] Summary tially in, and prevents proliferation of, irnmunocompetent cells, primarily of the T cell class (2, 5, 6, 23, 38, 49, 54). There is also We have identified seven adenine nucleosides in urines of un- in vivo and/or in vitro evidence for alternative mechanisms of treated adenosine deaminase (ADA) deficient patients, four of toxicity, which would operate via depletion of pyrimidine pools, which (adenosine, 2'-deoxyadenosine, 1-methyladenosine and N6- depletion of phosphoribosyl pyrophosphate and increases in cyclic methyladenosine) have been previously identified in urines of AMP or S-adenosyl homocysteine (16, 21, 24, 40, 46, 55). All of normals and/or ADA deficient patients. We confirm that ADA these mechanisms are dependent on accumulation of the substrates deficient patients excrete markedly increased amounts of 2'-deox- of ADA, adenosine and 2'-deoxyadenosine. yadenosine (582 k 363 versus normal of < 0.1 nmoles/mg creati- In addition to adenosine and 2'-deoxyadenosine, several other nine) and increased amounts of adenosine (29.4 & 5.7 versus modified adenine nucleosides occur naturally (17, 19) and are normal of 4.12 & 1.0 nmoles/mg creatinine). -
Extracellular Vesicles: Mechanisms in Human Health and Disease Marine Malloci, Liliana Perdomo, Maëva Veerasamy, Ramaroson Andriantsitohaina, Gilles Simard, M
Extracellular Vesicles: Mechanisms in Human Health and Disease Marine Malloci, Liliana Perdomo, Maëva Veerasamy, Ramaroson Andriantsitohaina, Gilles Simard, M. Carmen Martínez To cite this version: Marine Malloci, Liliana Perdomo, Maëva Veerasamy, Ramaroson Andriantsitohaina, Gilles Simard, et al.. Extracellular Vesicles: Mechanisms in Human Health and Disease. Antioxidants and Redox Signaling, Mary Ann Liebert, 2019, 30 (6), pp.813-856. 10.1089/ars.2017.7265. hal-02323323 HAL Id: hal-02323323 https://hal.archives-ouvertes.fr/hal-02323323 Submitted on 16 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Malloci COMPREHENSIVE INVITED REVIEW EXTRACELLULAR VESICLES: MECHANISMS IN HUMAN HEALTH AND DISEASE Marine Malloci1*, Liliana Perdomo1*, Maëva Veerasamy1, Ramaroson Andriantsitohaina1,2, Gilles Simard1,2, M. Carmen Martínez1,2 1INSERM UMR 1063, Stress oxydant et pathologies métaboliques, UNIV Angers, Université Bretagne Loire, F-49933, Angers, France; 2Centre Hospitalo-Universitaire d’Angers, F-49933, Angers, France *These authors contributed -
Extracellular Vesicles in Innate Immune Cell Programming
biomedicines Review Extracellular Vesicles in Innate Immune Cell Programming Naveed Akbar 1,* , Daan Paget 1,2 and Robin P. Choudhury 1 1 Radcliffe Department of Medicine, University of Oxford, Oxford OX3 9DU, UK; [email protected] (D.P.); [email protected] (R.P.C.) 2 Department of Pharmacology, University of Oxford, Oxford OX1 3QT, UK * Correspondence: [email protected] Abstract: Extracellular vesicles (EV) are a heterogeneous group of bilipid-enclosed envelopes that carry proteins, metabolites, RNA, DNA and lipids from their parent cell of origin. They mediate cellular communication to other cells in local tissue microenvironments and across organ systems. EV size, number and their biologically active cargo are often altered in response to pathological processes, including infection, cancer, cardiovascular diseases and in response to metabolic pertur- bations such as obesity and diabetes, which also have a strong inflammatory component. Here, we discuss the broad repertoire of EV produced by neutrophils, monocytes, macrophages, their pre- cursor hematopoietic stem cells and discuss their effects on the innate immune system. We seek to understand the immunomodulatory properties of EV in cellular programming, which impacts innate immune cell differentiation and function. We further explore the possibilities of using EV as immune targeting vectors, for the modulation of the innate immune response, e.g., for tissue preservation during sterile injury such as myocardial infarction or to promote tissue resolution of inflammation and potentially tissue regeneration and repair. Keywords: exosomes; transcription; neutrophil; monocyte; hematopoietic stem cell Citation: Akbar, N.; Paget, D.; Choudhury, R.P. Extracellular Vesicles in Innate Immune Cell Programming.