One Dimensional Markov Random Fields, Markov Chains and Topological Markov Fields
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Methods of Monte Carlo Simulation II
Methods of Monte Carlo Simulation II Ulm University Institute of Stochastics Lecture Notes Dr. Tim Brereton Summer Term 2014 Ulm, 2014 2 Contents 1 SomeSimpleStochasticProcesses 7 1.1 StochasticProcesses . 7 1.2 RandomWalks .......................... 7 1.2.1 BernoulliProcesses . 7 1.2.2 RandomWalks ...................... 10 1.2.3 ProbabilitiesofRandomWalks . 13 1.2.4 Distribution of Xn .................... 13 1.2.5 FirstPassageTime . 14 2 Estimators 17 2.1 Bias, Variance, the Central Limit Theorem and Mean Square Error................................ 19 2.2 Non-AsymptoticErrorBounds. 22 2.3 Big O and Little o Notation ................... 23 3 Markov Chains 25 3.1 SimulatingMarkovChains . 28 3.1.1 Drawing from a Discrete Uniform Distribution . 28 3.1.2 Drawing From A Discrete Distribution on a Small State Space ........................... 28 3.1.3 SimulatingaMarkovChain . 28 3.2 Communication .......................... 29 3.3 TheStrongMarkovProperty . 30 3.4 RecurrenceandTransience . 31 3.4.1 RecurrenceofRandomWalks . 33 3.5 InvariantDistributions . 34 3.6 LimitingDistribution. 36 3.7 Reversibility............................ 37 4 The Poisson Process 39 4.1 Point Processes on [0, )..................... 39 ∞ 3 4 CONTENTS 4.2 PoissonProcess .......................... 41 4.2.1 Order Statistics and the Distribution of Arrival Times 44 4.2.2 DistributionofArrivalTimes . 45 4.3 SimulatingPoissonProcesses. 46 4.3.1 Using the Infinitesimal Definition to Simulate Approx- imately .......................... 46 4.3.2 SimulatingtheArrivalTimes . 47 4.3.3 SimulatingtheInter-ArrivalTimes . 48 4.4 InhomogenousPoissonProcesses. 48 4.5 Simulating an Inhomogenous Poisson Process . 49 4.5.1 Acceptance-Rejection. 49 4.5.2 Infinitesimal Approach (Approximate) . 50 4.6 CompoundPoissonProcesses . 51 5 ContinuousTimeMarkovChains 53 5.1 TransitionFunction. 53 5.2 InfinitesimalGenerator . 54 5.3 ContinuousTimeMarkovChains . -
Poisson Processes Stochastic Processes
Poisson Processes Stochastic Processes UC3M Feb. 2012 Exponential random variables A random variable T has exponential distribution with rate λ > 0 if its probability density function can been written as −λt f (t) = λe 1(0;+1)(t) We summarize the above by T ∼ exp(λ): The cumulative distribution function of a exponential random variable is −λt F (t) = P(T ≤ t) = 1 − e 1(0;+1)(t) And the tail, expectation and variance are P(T > t) = e−λt ; E[T ] = λ−1; and Var(T ) = E[T ] = λ−2 The exponential random variable has the lack of memory property P(T > t + sjT > t) = P(T > s) Exponencial races In what follows, T1;:::; Tn are independent r.v., with Ti ∼ exp(λi ). P1: min(T1;:::; Tn) ∼ exp(λ1 + ··· + λn) . P2 λ1 P(T1 < T2) = λ1 + λ2 P3: λi P(Ti = min(T1;:::; Tn)) = λ1 + ··· + λn P4: If λi = λ and Sn = T1 + ··· + Tn ∼ Γ(n; λ). That is, Sn has probability density function (λs)n−1 f (s) = λe−λs 1 (s) Sn (n − 1)! (0;+1) The Poisson Process as a renewal process Let T1; T2;::: be a sequence of i.i.d. nonnegative r.v. (interarrival times). Define the arrival times Sn = T1 + ··· + Tn if n ≥ 1 and S0 = 0: The process N(t) = maxfn : Sn ≤ tg; is called Renewal Process. If the common distribution of the times is the exponential distribution with rate λ then process is called Poisson Process of with rate λ. Lemma. N(t) ∼ Poisson(λt) and N(t + s) − N(s); t ≥ 0; is a Poisson process independent of N(s); t ≥ 0 The Poisson Process as a L´evy Process A stochastic process fX (t); t ≥ 0g is a L´evyProcess if it verifies the following properties: 1. -
12 : Conditional Random Fields 1 Hidden Markov Model
10-708: Probabilistic Graphical Models 10-708, Spring 2014 12 : Conditional Random Fields Lecturer: Eric P. Xing Scribes: Qin Gao, Siheng Chen 1 Hidden Markov Model 1.1 General parametric form In hidden Markov model (HMM), we have three sets of parameters, j i transition probability matrix A : p(yt = 1jyt−1 = 1) = ai;j; initialprobabilities : p(y1) ∼ Multinomial(π1; π2; :::; πM ); i emission probabilities : p(xtjyt) ∼ Multinomial(bi;1; bi;2; :::; bi;K ): 1.2 Inference k k The inference can be done with forward algorithm which computes αt ≡ µt−1!t(k) = P (x1; :::; xt−1; xt; yt = 1) recursively by k k X i αt = p(xtjyt = 1) αt−1ai;k; (1) i k k and the backward algorithm which computes βt ≡ µt t+1(k) = P (xt+1; :::; xT jyt = 1) recursively by k X i i βt = ak;ip(xt+1jyt+1 = 1)βt+1: (2) i Another key quantity is the conditional probability of any hidden state given the entire sequence, which can be computed by the dot product of forward message and backward message by, i i i i X i;j γt = p(yt = 1jx1:T ) / αtβt = ξt ; (3) j where we define, i;j i j ξt = p(yt = 1; yt−1 = 1; x1:T ); i j / µt−1!t(yt = 1)µt t+1(yt+1 = 1)p(xt+1jyt+1)p(yt+1jyt); i j i = αtβt+1ai;jp(xt+1jyt+1 = 1): The implementation in Matlab can be vectorized by using, i Bt(i) = p(xtjyt = 1); j i A(i; j) = p(yt+1 = 1jyt = 1): 1 2 12 : Conditional Random Fields The relation of those quantities can be simply written in pseudocode as, T αt = (A αt−1): ∗ Bt; βt = A(βt+1: ∗ Bt+1); T ξt = (αt(βt+1: ∗ Bt+1) ): ∗ A; γt = αt: ∗ βt: 1.3 Learning 1.3.1 Supervised Learning The supervised learning is trivial if only we know the true state path. -
A Stochastic Processes and Martingales
A Stochastic Processes and Martingales A.1 Stochastic Processes Let I be either IINorIR+.Astochastic process on I with state space E is a family of E-valued random variables X = {Xt : t ∈ I}. We only consider examples where E is a Polish space. Suppose for the moment that I =IR+. A stochastic process is called cadlag if its paths t → Xt are right-continuous (a.s.) and its left limits exist at all points. In this book we assume that every stochastic process is cadlag. We say a process is continuous if its paths are continuous. The above conditions are meant to hold with probability 1 and not to hold pathwise. A.2 Filtration and Stopping Times The information available at time t is expressed by a σ-subalgebra Ft ⊂F.An {F ∈ } increasing family of σ-algebras t : t I is called a filtration.IfI =IR+, F F F we call a filtration right-continuous if t+ := s>t s = t. If not stated otherwise, we assume that all filtrations in this book are right-continuous. In many books it is also assumed that the filtration is complete, i.e., F0 contains all IIP-null sets. We do not assume this here because we want to be able to change the measure in Chapter 4. Because the changed measure and IIP will be singular, it would not be possible to extend the new measure to the whole σ-algebra F. A stochastic process X is called Ft-adapted if Xt is Ft-measurable for all t. If it is clear which filtration is used, we just call the process adapted.The {F X } natural filtration t is the smallest right-continuous filtration such that X is adapted. -
A Class of Measure-Valued Markov Chains and Bayesian Nonparametrics
Bernoulli 18(3), 2012, 1002–1030 DOI: 10.3150/11-BEJ356 A class of measure-valued Markov chains and Bayesian nonparametrics STEFANO FAVARO1, ALESSANDRA GUGLIELMI2 and STEPHEN G. WALKER3 1Universit`adi Torino and Collegio Carlo Alberto, Dipartimento di Statistica e Matematica Ap- plicata, Corso Unione Sovietica 218/bis, 10134 Torino, Italy. E-mail: [email protected] 2Politecnico di Milano, Dipartimento di Matematica, P.zza Leonardo da Vinci 32, 20133 Milano, Italy. E-mail: [email protected] 3University of Kent, Institute of Mathematics, Statistics and Actuarial Science, Canterbury CT27NZ, UK. E-mail: [email protected] Measure-valued Markov chains have raised interest in Bayesian nonparametrics since the seminal paper by (Math. Proc. Cambridge Philos. Soc. 105 (1989) 579–585) where a Markov chain having the law of the Dirichlet process as unique invariant measure has been introduced. In the present paper, we propose and investigate a new class of measure-valued Markov chains defined via exchangeable sequences of random variables. Asymptotic properties for this new class are derived and applications related to Bayesian nonparametric mixture modeling, and to a generalization of the Markov chain proposed by (Math. Proc. Cambridge Philos. Soc. 105 (1989) 579–585), are discussed. These results and their applications highlight once again the interplay between Bayesian nonparametrics and the theory of measure-valued Markov chains. Keywords: Bayesian nonparametrics; Dirichlet process; exchangeable sequences; linear functionals -
Introduction to Stochastic Processes - Lecture Notes (With 33 Illustrations)
Introduction to Stochastic Processes - Lecture Notes (with 33 illustrations) Gordan Žitković Department of Mathematics The University of Texas at Austin Contents 1 Probability review 4 1.1 Random variables . 4 1.2 Countable sets . 5 1.3 Discrete random variables . 5 1.4 Expectation . 7 1.5 Events and probability . 8 1.6 Dependence and independence . 9 1.7 Conditional probability . 10 1.8 Examples . 12 2 Mathematica in 15 min 15 2.1 Basic Syntax . 15 2.2 Numerical Approximation . 16 2.3 Expression Manipulation . 16 2.4 Lists and Functions . 17 2.5 Linear Algebra . 19 2.6 Predefined Constants . 20 2.7 Calculus . 20 2.8 Solving Equations . 22 2.9 Graphics . 22 2.10 Probability Distributions and Simulation . 23 2.11 Help Commands . 24 2.12 Common Mistakes . 25 3 Stochastic Processes 26 3.1 The canonical probability space . 27 3.2 Constructing the Random Walk . 28 3.3 Simulation . 29 3.3.1 Random number generation . 29 3.3.2 Simulation of Random Variables . 30 3.4 Monte Carlo Integration . 33 4 The Simple Random Walk 35 4.1 Construction . 35 4.2 The maximum . 36 1 CONTENTS 5 Generating functions 40 5.1 Definition and first properties . 40 5.2 Convolution and moments . 42 5.3 Random sums and Wald’s identity . 44 6 Random walks - advanced methods 48 6.1 Stopping times . 48 6.2 Wald’s identity II . 50 6.3 The distribution of the first hitting time T1 .......................... 52 6.3.1 A recursive formula . 52 6.3.2 Generating-function approach . -
Markov Process Duality
Markov Process Duality Jan M. Swart Luminy, October 23 and 24, 2013 Jan M. Swart Markov Process Duality Markov Chains S finite set. RS space of functions f : S R. ! S For probability kernel P = (P(x; y))x;y2S and f R define left and right multiplication as 2 X X Pf (x) := P(x; y)f (y) and fP(x) := f (y)P(y; x): y y (I do not distinguish row and column vectors.) Def Chain X = (Xk )k≥0 of S-valued r.v.'s is Markov chain with transition kernel P and state space S if S E f (Xk+1) (X0;:::; Xk ) = Pf (Xk ) a:s: (f R ) 2 P (X0;:::; Xk ) = (x0;:::; xk ) , = P[X0 = x0]P(x0; x1) P(xk−1; xk ): ··· µ µ µ Write P ; E for process with initial law µ = P [X0 ]. x δx x 2 · P := P with δx (y) := 1fx=yg. E similar. Jan M. Swart Markov Process Duality Markov Chains Set k µ k x µk := µP (x) = P [Xk = x] and fk := P f (x) = E [f (Xk )]: Then the forward and backward equations read µk+1 = µk P and fk+1 = Pfk : In particular π invariant law iff πP = π. Function h harmonic iff Ph = h h(Xk ) martingale. , Jan M. Swart Markov Process Duality Random mapping representation (Zk )k≥1 i.i.d. with common law ν, take values in (E; ). φ : S E S measurable E × ! P(x; y) = P[φ(x; Z1) = y]: Random mapping representation (E; ; ν; φ) always exists, highly non-unique. -
1 Introduction Branching Mechanism in a Superprocess from a Branching
数理解析研究所講究録 1157 巻 2000 年 1-16 1 An example of random snakes by Le Gall and its applications 渡辺信三 Shinzo Watanabe, Kyoto University 1 Introduction The notion of random snakes has been introduced by Le Gall ([Le 1], [Le 2]) to construct a class of measure-valued branching processes, called superprocesses or continuous state branching processes ([Da], [Dy]). A main idea is to produce the branching mechanism in a superprocess from a branching tree embedded in excur- sions at each different level of a Brownian sample path. There is no clear notion of particles in a superprocess; it is something like a cloud or mist. Nevertheless, a random snake could provide us with a clear picture of historical or genealogical developments of”particles” in a superprocess. ” : In this note, we give a sample pathwise construction of a random snake in the case when the underlying Markov process is a Markov chain on a tree. A simplest case has been discussed in [War 1] and [Wat 2]. The construction can be reduced to this case locally and we need to consider a recurrence family of stochastic differential equations for reflecting Brownian motions with sticky boundaries. A special case has been already discussed by J. Warren [War 2] with an application to a coalescing stochastic flow of piece-wise linear transformations in connection with a non-white or non-Gaussian predictable noise in the sense of B. Tsirelson. 2 Brownian snakes Throughout this section, let $\xi=\{\xi(t), P_{x}\}$ be a Hunt Markov process on a locally compact separable metric space $S$ endowed with a metric $d_{S}(\cdot, *)$ . -
Pdf File of Second Edition, January 2018
Probability on Graphs Random Processes on Graphs and Lattices Second Edition, 2018 GEOFFREY GRIMMETT Statistical Laboratory University of Cambridge copyright Geoffrey Grimmett Geoffrey Grimmett Statistical Laboratory Centre for Mathematical Sciences University of Cambridge Wilberforce Road Cambridge CB3 0WB United Kingdom 2000 MSC: (Primary) 60K35, 82B20, (Secondary) 05C80, 82B43, 82C22 With 56 Figures copyright Geoffrey Grimmett Contents Preface ix 1 Random Walks on Graphs 1 1.1 Random Walks and Reversible Markov Chains 1 1.2 Electrical Networks 3 1.3 FlowsandEnergy 8 1.4 RecurrenceandResistance 11 1.5 Polya's Theorem 14 1.6 GraphTheory 16 1.7 Exercises 18 2 Uniform Spanning Tree 21 2.1 De®nition 21 2.2 Wilson's Algorithm 23 2.3 Weak Limits on Lattices 28 2.4 Uniform Forest 31 2.5 Schramm±LownerEvolutionsÈ 32 2.6 Exercises 36 3 Percolation and Self-Avoiding Walks 39 3.1 PercolationandPhaseTransition 39 3.2 Self-Avoiding Walks 42 3.3 ConnectiveConstantoftheHexagonalLattice 45 3.4 CoupledPercolation 53 3.5 Oriented Percolation 53 3.6 Exercises 56 4 Association and In¯uence 59 4.1 Holley Inequality 59 4.2 FKG Inequality 62 4.3 BK Inequalitycopyright Geoffrey Grimmett63 vi Contents 4.4 HoeffdingInequality 65 4.5 In¯uenceforProductMeasures 67 4.6 ProofsofIn¯uenceTheorems 72 4.7 Russo'sFormulaandSharpThresholds 80 4.8 Exercises 83 5 Further Percolation 86 5.1 Subcritical Phase 86 5.2 Supercritical Phase 90 5.3 UniquenessoftheIn®niteCluster 96 5.4 Phase Transition 99 5.5 OpenPathsinAnnuli 103 5.6 The Critical Probability in Two Dimensions 107 -
Mean Field Methods for Classification with Gaussian Processes
Mean field methods for classification with Gaussian processes Manfred Opper Neural Computing Research Group Division of Electronic Engineering and Computer Science Aston University Birmingham B4 7ET, UK. opperm~aston.ac.uk Ole Winther Theoretical Physics II, Lund University, S6lvegatan 14 A S-223 62 Lund, Sweden CONNECT, The Niels Bohr Institute, University of Copenhagen Blegdamsvej 17, 2100 Copenhagen 0, Denmark winther~thep.lu.se Abstract We discuss the application of TAP mean field methods known from the Statistical Mechanics of disordered systems to Bayesian classifi cation models with Gaussian processes. In contrast to previous ap proaches, no knowledge about the distribution of inputs is needed. Simulation results for the Sonar data set are given. 1 Modeling with Gaussian Processes Bayesian models which are based on Gaussian prior distributions on function spaces are promising non-parametric statistical tools. They have been recently introduced into the Neural Computation community (Neal 1996, Williams & Rasmussen 1996, Mackay 1997). To give their basic definition, we assume that the likelihood of the output or target variable T for a given input s E RN can be written in the form p(Tlh(s)) where h : RN --+ R is a priori assumed to be a Gaussian random field. If we assume fields with zero prior mean, the statistics of h is entirely defined by the second order correlations C(s, S') == E[h(s)h(S')], where E denotes expectations 310 M Opper and 0. Winther with respect to the prior. Interesting examples are C(s, s') (1) C(s, s') (2) The choice (1) can be motivated as a limit of a two-layered neural network with infinitely many hidden units with factorizable input-hidden weight priors (Williams 1997). -
MCMC Learning (Slides)
Uniform Distribution Learning Markov Random Fields Harmonic Analysis Experiments and Questions MCMC Learning Varun Kanade Elchanan Mossel UC Berkeley UC Berkeley August 30, 2013 Uniform Distribution Learning Markov Random Fields Harmonic Analysis Experiments and Questions Outline Uniform Distribution Learning Markov Random Fields Harmonic Analysis Experiments and Questions Uniform Distribution Learning Markov Random Fields Harmonic Analysis Experiments and Questions Uniform Distribution Learning • Unknown target function f : {−1; 1gn ! {−1; 1g from some class C • Uniform distribution over {−1; 1gn • Random Examples: Monotone Decision Trees [OS06] • Random Walk: DNF expressions [BMOS03] • Membership Query: DNF, TOP [J95] • Main Tool: Discrete Fourier Analysis X Y f (x) = f^(S)χS (x); χS (x) = xi S⊆[n] i2S • Can utilize sophisticated results: hypercontractivity, invariance, etc. • Connections to cryptography, hardness, de-randomization etc. • Unfortunately, too much of an idealization. In practice, variables are correlated. Uniform Distribution Learning Markov Random Fields Harmonic Analysis Experiments and Questions Markov Random Fields • Graph G = ([n]; E). Each node takes some value in finite set A. n • Distribution over A : (for φC non-negative, Z normalization constant) 1 Y Pr((σ ) ) = φ ((σ ) ) v v2[n] Z C v v2C clique C Uniform Distribution Learning Markov Random Fields Harmonic Analysis Experiments and Questions Markov Random Fields • MRFs widely used in vision, computational biology, biostatistics etc. • Extensive Algorithmic Theory for sampling from MRFs, recovering parameters and structures • Learning Question: Given f : An ! {−1; 1g. (How) Can we learn with respect to MRF distribution? • Can we utilize the structure of the MRF to aid in learning? Uniform Distribution Learning Markov Random Fields Harmonic Analysis Experiments and Questions Learning Model • Let M be a MRF with distribution π and f : An ! {−1; 1g the target function • Learning algorithm gets i.i.d. -
1 Markov Chain Notation for a Continuous State Space
The Metropolis-Hastings Algorithm 1 Markov Chain Notation for a Continuous State Space A sequence of random variables X0;X1;X2;:::, is a Markov chain on a continuous state space if... ... where it goes depends on where is is but not where is was. I'd really just prefer that you have the “flavor" here. The previous Markov property equation that we had P (Xn+1 = jjXn = i; Xn−1 = in−1;:::;X0 = i0) = P (Xn+1 = jjXn = i) is uninteresting now since both of those probabilities are zero when the state space is con- tinuous. It would be better to say that, for any A ⊆ S, where S is the state space, we have P (Xn+1 2 AjXn = i; Xn−1 = in−1;:::;X0 = i0) = P (Xn+1 2 AjXn = i): Note that it is okay to have equalities on the right side of the conditional line. Once these continuous random variables have been observed, they are fixed and nailed down to discrete values. 1.1 Transition Densities The continuous state analog of the one-step transition probability pij is the one-step tran- sition density. We will denote this as p(x; y): This is not the probability that the chain makes a move from state x to state y. Instead, it is a probability density function in y which describes a curve under which area represents probability. x can be thought of as a parameter of this density. For example, given a Markov chain is currently in state x, the next value y might be drawn from a normal distribution centered at x.