Genes, Behavior, and Developmental Emergentism: One Process, Indivisible?
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National Library of Medicine Board of Regents May 2014 Meeting Minutes
DEPARTMENT OF HEALTH AND HUMAN SERVICES NATIONAL INSTITUTES OF HEALTH NATIONAL LIBRARY OF MEDICINE MINUTES OF THE BOARD OF REGENTS May 13, 2014 The 166th meeting of the Board of Regents was convened on May 13, 2014, at 9:00 a.m. in the Board Room, Building 38, National Library of Medicine (NLM), National Institutes of Health (NIH), in Bethesda, Maryland. The meeting was open to the public from 9:00 a.m. to 4:25 p.m., followed by a closed session for consideration of grant applications until 4:45 p.m. MEMBERS PRESENT [Appendix A]: Dr. Ronald Evens [Chair], Washington University School of Medicine Dr. Katherine Gottlieb, Southcentral Foundation Dr. Robert Greenes, Arizona State University Dr. Trudy MacKay, North Carolina State University Ms. Mary Ryan, University of Arkansas for Medical Sciences Library Dr. F. Douglas Scutchfield, University of Kentucky College of Public Health Ms. Gail Yokote, University of California, Davis MEMBERS NOT PRESENT: Dr. David Fleming, University of Missouri School of Medicine Dr. Henry Lewis, American University of Health Sciences Dr. Ralph Roskies, University of Pittsburgh EX OFFICIO AND ALTERNATE MEMBERS PRESENT: Mr. Christopher Cole, National Agricultural Library Dr. Joseph Francis, Veterans Health Administration MGEN Dorothy Hogg, United States Air Force Capt. Paul Jung, Office of the Surgeon General, PHS Ms. Kathryn Mendenhall, Library of Congress Col. Cathy Nace, United States Army Dr. Dale Smith, Uniformed Services University of the Health Sciences CONSULTANTS TO THE BOR PRESENT: Dr. Tenley Albright, Massachusetts Institute of Technology Dr. Marion Ball, Johns Hopkins School of Nursing Dr. Holly Buchanan, University of New Mexico Dr. -
ABSTRACT OPPENHEIM, SARA JANE. the Genetic Basis of Host
ABSTRACT OPPENHEIM, SARA JANE. The Genetic Basis of Host Plant Use in a Specialist and a Generalist Moth. (Under the direction of Fred L Gould.) Differences in host plant use between Heliothis subflexa and H. virescens provide a compelling example of closely-related species with strikingly divergent ecological adaptations. I used a QTL mapping approach to investigate the genetic basis of interspecific differences between H. subflexa and H. virescens in use of Physalis angulata, a host of H. subflexa but not H. virescens. I introgressed H. subflexa genes into the H. virescens background by backcrossing interspecific hybrids to H. virescens, and examined the effects of QTL from H. subflexa on use of P. angulata. Many QTL had different size effects, and sometimes even different direction of effects, in males and females. Many QTL differed among lineages, but this variation probably reflects a lack of power to detect QTL rather than true differences in QTL effects. Size, significance, and direction of effects of some QTL varied among families within a lineage. The same Hs-like phenotype could be produced by introgressing different H. subflexa chromosomes into the H. virescens background. Sample size was increased almost four-fold from 2001 to 2007, and the increase in the number of QTL detected almost exactly matched the increase in sample size. QTL effect sizes were small, when measured as percent of backcross variation explained, but were larger when considered as the percent of interspecific difference explained. QTL effect sizes were consistent across traits. For most traits, individual QTL accounted for 10 to 40 percent of the interspecific difference, while backcross variation explained ranged from 0.5 to 6 percent. -
La Biología Evolutiva Contemporánea: ¿Una Revolución Más En La Ciencia?
LA BIOLOGÍA EVOLUTIVA CONTEMPORÁNEA: ¿UNA REVOLUCIÓN MÁS EN LA CIENCIA? COLECCIÓN DEBATE Y REFLEXIÓN Comité editorial Marina Garone Gravier Carlos Hernández Alcántara Lev Orlando Jardón Barbolla Ricardo Lino Mansilla Corona Octavio Miramontes Vidal María Elena Olivera Cordóva Mauricio Sánchez Menchero Guadalupe Valencia García Medley Aimée Vega Montiel María del Consuelo Yerena Capistrán La biología evolutiva contemporánea: ¿una revolución más en la ciencia? Julio Muñoz Rubio (coordinador) UNIVERSIDAD NAciONAL AUTÓNOMA DE MÉXicO CENTRO DE INVESTIGAciONES INTERDISciPLINARIAS EN CIENciAS Y HUMANIDADES MÉXICO, 2019 Primera edición electrónica, 2019 D. R. © Universidad Nacional Autónoma de México Centro de Investigaciones Interdisciplinarias en Ciencias y Humanidades Torre II de Humanidades 4º piso Circuito Escolar, Ciudad Universitaria Coyoacán 04510, México, CDMX www.ceiich.unam.mx Cuidado de la edición: Clara E. Castillo Alvarez Diseño de portada: Martha Laura Martínez Cuevas ISBN de la colección: 978-607-30-1052-8 ISBN del volumen: 978-607-30-1683-4 A la memoria de mi padre, Jerónimo Muñoz Rosas (1926-2016); profesor universitario que, luego de la inevitable pregunta infantil: "¿De dónde venimos todos?" que le formulé cuando contaba con unos cuatro años de edad, me respondió explicándome, por primera vez en mi vida, el fenómeno de la evolución de las especies. No por Mucho Publicar Te consagras Más Temprano EFRAÍN HUERTA ÍNDICE Introducción . 13 La revolución en biología como cuestionamiento de las relaciones esencia-apariencia Julio Muñoz Rubio . 23 La revolución no-darwiniana: ¿es darwiniana la extensión de la Síntesis Moderna? Carlos Ochoa y Ana Barahona . 71 ¿Una revolución científica en biología evolutiva? Juan Núñez-Farfán y Luis E . -
An Error Detection and Correction Framework for Connectomics
An Error Detection and Correction Framework for Connectomics Jonathan Zung Ignacio Tartavull∗ Kisuk Leey Princeton University Princeton University MIT [email protected] [email protected] [email protected] H. Sebastian Seung Princeton University [email protected] Abstract We define and study error detection and correction tasks that are useful for 3D reconstruction of neurons from electron microscopic imagery, and for image seg- mentation more generally. Both tasks take as input the raw image and a binary mask representing a candidate object. For the error detection task, the desired output is a map of split and merge errors in the object. For the error correction task, the desired output is the true object. We call this object mask pruning, because the candidate object mask is assumed to be a superset of the true object. We train multiscale 3D convolutional networks to perform both tasks. We find that the error-detecting net can achieve high accuracy. The accuracy of the error-correcting net is enhanced if its input object mask is “advice” (union of erroneous objects) from the error-detecting net. 1 Introduction While neuronal circuits can be reconstructed from volumetric electron microscopic imagery, the process has historically [39] and even recently [37] been highly laborious. One of the most time- consuming reconstruction tasks is the tracing of the brain’s “wires,” or neuronal branches. This task is an example of instance segmentation, and can be automated through computer detection of the boundaries between neurons. Convolutional networks were first applied to neuronal boundary detection a decade ago [14, 38]. Since then convolutional nets have become the standard approach, arXiv:1708.02599v2 [cs.CV] 3 Dec 2017 and the accuracy of boundary detection has become impressively high [40, 3, 21, 9]. -
BIOLOGY 639 SCIENCE ONLINE the Unexpected Brains Behind Blood Vessel Growth 641 THIS WEEK in SCIENCE 668 U.K
4 February 2005 Vol. 307 No. 5710 Pages 629–796 $10 07%.'+%#%+& 2416'+0(70%6+10 37#06+6#6+8' 51(69#4' #/2.+(+%#6+10 %'..$+1.1); %.10+0) /+%41#44#;5 #0#.;5+5 #0#.;5+5 2%4 51.76+105 Finish first with a superior species. 50% faster real-time results with FullVelocity™ QPCR Kits! Our FullVelocity™ master mixes use a novel enzyme species to deliver Superior Performance vs. Taq -Based Reagents FullVelocity™ Taq -Based real-time results faster than conventional reagents. With a simple change Reagent Kits Reagent Kits Enzyme species High-speed Thermus to the thermal profile on your existing real-time PCR system, the archaeal Fast time to results FullVelocity technology provides you high-speed amplification without Enzyme thermostability dUTP incorporation requiring any special equipment or re-optimization. SYBR® Green tolerance Price per reaction $$$ • Fast, economical • Efficient, specific and • Probe and SYBR® results sensitive Green chemistries Need More Information? Give Us A Call: Ask Us About These Great Products: Stratagene USA and Canada Stratagene Europe FullVelocity™ QPCR Master Mix* 600561 Order: (800) 424-5444 x3 Order: 00800-7000-7000 FullVelocity™ QRT-PCR Master Mix* 600562 Technical Services: (800) 894-1304 Technical Services: 00800-7400-7400 FullVelocity™ SYBR® Green QPCR Master Mix 600581 FullVelocity™ SYBR® Green QRT-PCR Master Mix 600582 Stratagene Japan K.K. *U.S. Patent Nos. 6,528,254, 6,548,250, and patents pending. Order: 03-5159-2060 Purchase of these products is accompanied by a license to use them in the Polymerase Chain Reaction (PCR) Technical Services: 03-5159-2070 process in conjunction with a thermal cycler whose use in the automated performance of the PCR process is YYYUVTCVCIGPGEQO covered by the up-front license fee, either by payment to Applied Biosystems or as purchased, i.e., an authorized thermal cycler. -
The Neural Circuit for Touch Sensitivity in Caenorhabditis Elegans'
0270.6474/85/0504-0956$02.0’3/0 The Journal of Neuroscience Copyright 0 Society for Neuroscience Vol. 5. No. 4, pp. 9X-964 Printed in U.S.A. April 1985 The Neural Circuit for Touch Sensitivity in Caenorhabditis elegans’ MARTIN CHALFIE,*$*, JOHN E. SULSTON,* JOHN G. WHITE,* EILEEN SOUTHGATE,* J. NICHOL THOMSON,+ AND SYDNEY BRENNERS * Deoartment of Biolooical Sciences, Columbia University, New York, New York 10027 and $ Medical Research Council Laboratory of Molecular Biology, Hiis Road, Cambridge CB2 2QH, En&and Abstract In this paper, we use an alternative approach to analyze the function of specific cells and synapses in that part of the C. elegans The neural pathways for touch-induced movement in Cae- nervous system that mediates touch-induced movement. The recon- norhabditis ekgans contain six touch receptors, five pairs of structions are used to identify cells that are likely to be involved in interneurons, and 69 motor neurons. The synaptic relation- the touch reflex. The role of these cells is then tested by killing them ships among these cells have been deduced from recon- with a laser microbeam (Sulston and White, 1980) and observing structions from serial section electron micrographs, and the the effects of cell loss on the touch response. This method has roles of the cells were assessed by examining the behavior enabled us to confirm the functional importance of certain synapses of animals after selective killing of precursors of the cells by seen in the electron microscope and to generate a plausible model laser microsurgery. This analysis revealed that there are two of the touch reflex circuit. -
Trial Please Esteemed Panel of Researchers
The Biomedical and Life Sciences Collection • Regularly expanded, constantly updated • Already contains over 700 presentations • Growing monthly to over 1,000 talks “This is an outstanding Seminar style presentations collection. Alongside journals and books no self-respecting library in institutions hosting by leading world experts research in biomedicine and the life sciences should be without access to these talks.” When you want them, Professor Roger Kornberg, Nobel Laureate, Stanford University School of Medicine, USA as often as you want them “I commend Henry Stewart Talks for the novel and • For research scientists, graduate • Look and feel of face-to-face extremely useful complement to teaching and research.” students and the most committed seminars that preserve each Professor Sir Aaron Klug OM FRS, Nobel Laureate, The Medical senior undergraduates speaker’s personality and Research Council, University of approach Cambridge, UK • Talks specially commissioned “This collection of talks is a and organized into • A must have resource for all seminar fest; assembled by an extremely eminent group of comprehensive series that cover researchers in the biomedical editors, the world class speakers deliver insightful talks illustrated both the fundamentals and the and life sciences whether in with slides of the highest latest advances academic institutions or standards. Hundreds of hours of thought provoking presentations industry on biomedicine and life sciences. • Simple format – animated slides It is an impressive achievement!” with accompanying narration, Professor Herman Waldmann FRS, • Available online to view University of Oxford, UK synchronized for easy listening alone or with colleagues “Our staff here at GSK/Research Triangle Park wishes to convey its congratulations to your colleagues at Henry Stewart for this first-rate collection of talks from such an To access your free trial please esteemed panel of researchers. -
WEB Julyaugust2008:New ASPB News 2008.Qxd
ASPB News THE NEWSLETTER OF THE AMERICAN SOCIETY OF PLANT BIOLOGISTS Volume 35, Number 4 July/August 2008 President’s Letter Inside This Issue Three ASPB Members Elected to NAS A Model Citizen The Pan American Congress on Plants In my high school years in the late entire continent). All these events evoked and BioEnergy 1960s, I do not think I ever aspired to a visceral, emotional response—“they” be a “model citizen” of the society I saw (the older generation) were killing the around me. As a matter of fact, I think planet—that resonated perfectly with the Plant Biology 2008 being a model citizen would have been normal rebellion of adolescence. coverage starts on page12 anathema to me, rather akin to the In my college years, I was much influ- “goody two-shoes” term of derision of enced by Limits to Growth (2), which my younger years. It was the time of mathematically modeled the conse- the antihero, whether Donald Suther- quences of a rapidly growing world pop- land and Elliot Gould in MASH, Faye ulation given finite resources. That Dunaway and Warren Beatty in Bonnie Rob McClung analysis was controversial and has been and Clyde, Peter Fonda and Dennis Hopper in Easy criticized for the limitations of the data sets consid- Rider, Paul Newman and Robert Redford in Butch ered, but the premise was influential, and the basic Cassidy and the Sundance Kid, or Jack Nicholson in message, to me, remains fundamentally sound. Expo- Five Easy Pieces. I played in a rock ’n’ roll band— nential growth (in population, resource utilization, what can a poor boy do? (1). -
Genetic Architecture of Hybrid Fitness and Wood Quality Traits in a Wide Interspecific Cross of Eucalyptus Tree Species
ABSTRACT MYBURG, ALEXANDER ANDREW. Genetic Architecture of Hybrid Fitness and Wood Quality Traits in a Wide Interspecific Cross of Eucalyptus Tree Species. (Under the supervision of Ross W. Whetten and Ronald R. Sederoff.) The genetic architecture of interspecific differentiation plays a key role in the evolution of reproductive isolating barriers in plants, and has important implications for hybrid breeding programs. Interspecific hybridization is an important approach towards the genetic improvement of Eucalyptus tree plantations. However, incompatibilities between diverged eucalypt genomes often lead to reduced fitness of interspecific hybrids and decrease the efficiency of hybrid breeding programs. Furthermore, very little information is available on the genetic control of quantitative traits in interspecific hybrids of Eucalyptus tree species. The aim of this project was to obtain a detailed description of the genetic architecture of hybrid fitness and wood property traits in an interspecific cross between two commercially important hardwood tree species, E. grandis and E. globulus spp. globulus. This cross combines the superior growth and adaptability of E. grandis with the excellent wood properties of E. globulus. The two species are members of different sections of the subgenus Symphyomyrtus and hybrid generations of this wide cross are characterized by large amounts of F1 hybrid inviability and F2 hybrid breakdown. Two interspecific backcross families of E. grandis × E. globulus were each genotyped with more than 800 amplified fragment length polymorphism (AFLP) markers using a new high- throughput protocol for AFLP analysis on automated DNA sequencers. A pseudo-backcross mapping approach was used to generate detailed comparative genetic maps of a single superior F1 hybrid tree and of two backcross parents. -
Applications of the Free-Living Nematode, Caenorhabditis Elegans: a Review
Journal of Zoological Research Volume 3, Issue 4, 2019, PP 19-30 ISSN 2637-5575 Applications of the Free-Living Nematode, Caenorhabditis Elegans: A Review Marwa I. Saad El-Din* Assistant Professor, Zoology Department, Faculty of Science, Suez Canal University, Egypt *Corresponding Author: Marwa I. Saad El-Din, Assistant Professor, Zoology Department, Faculty of Science, Suez Canal University, Egypt. Email: [email protected]. ABSTRACT The free-living nematode, Caenorhabditis elegans, has been suggested as an excellent model organism in ecotoxicological studies. It is a saprophytic nematode species that inhabits soil and leaf-litter environments in many parts of the world. It has emerged to be an important experimental model in a broad range of areas including neuroscience, developmental biology, molecular biology, genetics, and biomedical science. Characteristics of this animal model that have contributed to its success include its genetic manipulability, invariant and fully described developmental program, well-characterized genome, ease of culture and maintenance, short and prolific life cycle, and small and transparent body. These features have led to an increasing use of C. elegans for environmental toxicology and ecotoxicology studies since the late 1990s. Although generally considered a soil organism, it lives in the interstitial water between soil particles and can be easily cultured in aquatic medium within the laboratory. It has been successfully used to study toxicity of a broad range of environmental toxicants using both lethal and sub lethal endpoints including behavior, growth and reproduction and feeding. In this work we review the choice, use and applications of this worm as an experimental organism for biological and biomedical researches that began in the 1960s. -
SYDNEY BRENNER Salk Institute, 100010 N
NATURE’S GIFT TO SCIENCE Nobel Lecture, December 8, 2002 by SYDNEY BRENNER Salk Institute, 100010 N. Torrey Pines Road, La Jolla, California, USA, and King’s College, Cambridge, England. The title of my lecture is “Nature’s gift to Science.” It is not a lecture about one scientific journal paying respects to another, but about how the great di- versity of the living world can both inspire and serve innovation in biological research. Current ideas of the uses of Model Organisms spring from the ex- emplars of the past and choosing the right organism for one’s research is as important as finding the right problems to work on. In all of my research these two decisions have been closely intertwined. Without doubt the fourth winner of the Nobel prize this year is Caenohabditis elegans; it deserves all of the honour but, of course, it will not be able to share the monetary award. I intend to tell you a little about the early work on the nematode to put it into an intellectual perspective. It bridges, both in time and concept, the biol- ogy we practice today and the biology that was initiated some fifty years ago with the revolutionary discovery of the double-helical structure of DNA by Watson and Crick. My colleagues who follow will tell you more about the worm and also recount their incisive research on the cell lineage and on the genetic control of all death. To begin with, I can do no better than to quote from the paper I published in 1974 (1). -
A Cellular and Regulatory Map of the Cholinergic Nervous System of C
TOOLS AND RESOURCES A cellular and regulatory map of the cholinergic nervous system of C. elegans Laura Pereira1,2,3*, Paschalis Kratsios1,2,3†, Esther Serrano-Saiz1,2,3†, Hila Sheftel4, Avi E Mayo4, David H Hall5, John G White6, Brigitte LeBoeuf7, L Rene Garcia7,8, Uri Alon4, Oliver Hobert1,2,3* 1Department of Biological Sciences, Columbia University, New York, United States; 2Department of Biochemistry and Molecular Biophysics, Columbia University, New York, United States; 3Howard Hughes Medical Institute, Columbia University, New York, United States; 4Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel; 5Department of Neuroscience, Albert Einstein College of Medicine, New York, United States; 6MRC Laboratory of Molecular Biology, Cambridge, United Kingdom; 7Department of Biology, Texas A&M University, College Station, United States; 8Howard Hughes Medical Institute, Texas A&M University, College Station, United States Abstract Nervous system maps are of critical importance for understanding how nervous systems develop and function. We systematically map here all cholinergic neuron types in the male and hermaphrodite C. elegans nervous system. We find that acetylcholine (ACh) is the most broadly used neurotransmitter and we analyze its usage relative to other neurotransmitters within the context of the entire connectome and within specific network motifs embedded in the connectome. We reveal several dynamic aspects of cholinergic neurotransmitter identity, including *For correspondence: pereira. a sexually dimorphic glutamatergic to cholinergic neurotransmitter switch in a sex-shared [email protected] (LP); or38@ interneuron. An expression pattern analysis of ACh-gated anion channels furthermore suggests that columbia.edu (OH) ACh may also operate very broadly as an inhibitory neurotransmitter.