The Adhesive System and Anisotropic Shear Force of Guizhou
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Comparison of Evolutionary Rates in the Mitochondrial DNA Cytochrome B Gene and Control Region and Their Implications for Phylog
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Institute of Hydrobiology, Chinese Academy Of Sciences Molecular Phylogenetics and Evolution 39 (2006) 347–357 www.elsevier.com/locate/ympev Comparison of evolutionary rates in the mitochondrial DNA cytochrome b gene and control region and their implications for phylogeny of the Cobitoidea (Teleostei: Cypriniformes) Qiongying Tang a,b, Huanzhang Liu a,¤, Richard Mayden c, Bangxi Xiong b a Institute of Hydrobiology, Chinese Academy of Sciences, Hubei, Wuhan 430072, PR China b College of Fishery, Huazhong Agricultural University, Hubei, Wuhan 430070, PR China c Department of Biology, Saint Louis University, 3507 Laclede Ave., St. Louis, MO 63103-2010, USA Received 6 July 2005; revised 15 August 2005; accepted 18 August 2005 Available online 4 October 2005 Abstract It is widely accepted that mitochondrial DNA (mtDNA) control region evolves faster than protein encoding genes with few excep- tions. In the present study, we sequenced the mitochondrial cytochrome b gene (cyt b) and control region (CR) and compared their rates in 93 specimens representing 67 species of loaches and some related taxa in the Cobitoidea (Order Cypriniformes). The results showed that sequence divergences of the CR were broadly higher than those of the cyt b (about 1.83 times). However, in considering only closely related species, CR sequence evolution was slower than that of cyt b gene (ratio of CR/cyt b is 0.78), a pattern that is found to be very common in Cypriniformes. Combined data of the cyt b and CR were used to estimate the phylogenetic relationship of the Cobitoidea by maximum parsimony, neighbor-joining, and Bayesian methods. -
Oreochromis Niloticus): Molecular Cloning, Tissue Distribution, and Transcriptional Changes in T Various Salinity of Seawater
Genomics 112 (2020) 2213–2222 Contents lists available at ScienceDirect Genomics journal homepage: www.elsevier.com/locate/ygeno Characterization of two kcnk3 genes in Nile tilapia (Oreochromis niloticus): Molecular cloning, tissue distribution, and transcriptional changes in T various salinity of seawater Zheng-Yong Wena,b, Chao Bianb, Xinxin Youa,b, Xinhui Zhangb, Jia Lib, Qiuyao Zhana,b, ⁎ ⁎ Yuxiang Penga,b, Yuan-You Lic, , Qiong Shia,b, a BGI Education Center, University of Chinese Academy of Sciences, Shenzhen 518083, China b Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI Academy of Marine Sciences, BGI Marine, BGI, Shenzhen 518083, China c School of Marine Sciences, South China Agricultural University, Guangzhou 510642, China ARTICLE INFO ABSTRACT Keywords: As one important member of the two-pore-domain potassium channel (K2P) family, potassium channel subfamily kcnk3 gene K member 3 (KCNK3) has been reported for thermogenesis regulation, energy homeostasis, membrane potential Gene structure conduction, and pulmonary hypertension in mammals. However, its roles in fishes are far less examined and Genomic survey published. In the present study, we identified two kcnk3 genes (kcnk3a and kcnk3b) in an euryhaline fish, Nile Phylogenetic analysis tilapia (Oreochromis niloticus), by molecular cloning, genomic survey and laboratory experiments to investigate Tissue distribution their potential roles for osmoregulation. We obtained full-length coding sequences of the kcnk3a and kcnk3b kcnk3 cluster Osmoregulation genes (1209 and 1173 bp), which encode 402 and 390 amino acids, respectively. Subsequent multiple sequence Nile Tilapia (Oreochromis niloticus) alignments, putative 3D-structure model prediction, genomic survey and phylogenetic analysis confirmed that two kcnk3 paralogs are widely presented in fish genomes. -
A Functional-Morphological Study on the Attachment, Respiration and Feeding Mechanisms in Balitorinae (Balitoridae, Teleostei)
Faculty of Sciences Department of Biology Research group: Evolutionary Morphology of Vertebrates Academic year 2012-2013 A functional-morphological study on the attachment, respiration and feeding mechanisms in Balitorinae (Balitoridae, Teleostei) De Meyer Jens Supervisor: Dr. Tom Geerinckx Thesis submitted to obtain the degree of Tutor: Dr. Tom Geerinckx Master in Biology II © Faculty of Sciences – Evolutionary Morphology of Vertebrates Deze masterproef bevat vertrouwelijk informatie en vertrouwelijke onderzoeksresultaten die toebehoren aan de UGent. De inhoud van de masterproef mag onder geen enkele manier publiek gemaakt worden, noch geheel noch gedeeltelijk zonder de uitdrukkelijke schriftelijke voorafgaandelijke toestemming van de UGent vertegenwoordiger, in casu de promotor. Zo is het nemen van kopieën of het op eender welke wijze dupliceren van het eindwerk verboden, tenzij met schriftelijke toestemming. Het niet respecteren van de confidentiële aard van het eindwerk veroorzaakt onherstelbare schade aan de UGent. Ingeval een geschil zou ontstaan in het kader van deze verklaring, zijn de rechtbanken van het arrondissement Gent uitsluitend bevoegd daarvan kennis te nemen. All rights reserved. This thesis contains confidential information and confidential research results that are property to the UGent. The contents of this master thesis may under no circumstances be made public, nor complete or partial, without the explicit and preceding permission of the UGent representative, i.e. the supervisor. The thesis may under no circumstances be copied or duplicated in any form, unless permission granted in written form. Any violation of the confidential nature of this thesis may impose irreparable damage to the UGent. In case of a dispute that may arise within the context of this declaration, the Judicial Court of© All rights reserved. -
The Structure and Function of the Sucker Systems of Hill Stream Loaches
bioRxiv preprint doi: https://doi.org/10.1101/851592; this version posted November 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 The structure and function of the sucker systems of hill stream 2 loaches. 3 4 Jay Willis*, Oxford University. Department of Zoology 5 Theresa Burt de Perera, Oxford University. Department of Zoology 6 Cait Newport, Oxford University. Department of Zoology 7 Guillaume Poncelet Oxford University. Department of Zoology 8 Craig J Sturrock, University of Nottingham, School of Biosciences 9 [email protected]. 10 Adrian Thomas, Oxford University. Department of Zoology 11 12 Corresponding author: [email protected] 13 Document components: 14 Abstract: 238 15 Materials and Methods: 2036 16 Main body (Abstract, Intro., Results, Discussion, Figure captions): 6779 17 Figures: 9 bioRxiv preprint doi: https://doi.org/10.1101/851592; this version posted November 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 18 Abstract 19 Hill stream loaches (family Balitoridae and Gastromyzontidae) are thumb-sized fish that effortlessly 20 exploit environments where flow rates are so high that potential competitors would be washed 21 away. To cope with these extreme flow rates hill stream loaches have evolved adaptations to stick to 22 the bottom, equivalent to the downforce generating wings and skirts of F1 racing cars, and scale 23 architecture reminiscent of the drag-reducing riblets of Mako sharks. -
Copyright Warning & Restrictions
Copyright Warning & Restrictions The copyright law of the United States (Title 17, United States Code) governs the making of photocopies or other reproductions of copyrighted material. Under certain conditions specified in the law, libraries and archives are authorized to furnish a photocopy or other reproduction. One of these specified conditions is that the photocopy or reproduction is not to be “used for any purpose other than private study, scholarship, or research.” If a, user makes a request for, or later uses, a photocopy or reproduction for purposes in excess of “fair use” that user may be liable for copyright infringement, This institution reserves the right to refuse to accept a copying order if, in its judgment, fulfillment of the order would involve violation of copyright law. Please Note: The author retains the copyright while the New Jersey Institute of Technology reserves the right to distribute this thesis or dissertation Printing note: If you do not wish to print this page, then select “Pages from: first page # to: last page #” on the print dialog screen The Van Houten library has removed some of the personal information and all signatures from the approval page and biographical sketches of theses and dissertations in order to protect the identity of NJIT graduates and faculty. ABSTRACT THESE FISH WERE MADE FOR WALKING: MORPHOLOGY AND WALKING KINEMATICS IN BALITORID LOACHES by Callie Hendricks Crawford Terrestrial excursions have been observed in multiple lineages of marine and freshwater fishes. These ventures into the terrestrial environment may be used when fish are searching out new habitat during drought, escaping predation, laying eggs, or seeking food sources. -
Resolving Cypriniformes Relationships Using an Anchored Enrichment Approach Carla C
Stout et al. BMC Evolutionary Biology (2016) 16:244 DOI 10.1186/s12862-016-0819-5 RESEARCH ARTICLE Open Access Resolving Cypriniformes relationships using an anchored enrichment approach Carla C. Stout1*†, Milton Tan1†, Alan R. Lemmon2, Emily Moriarty Lemmon3 and Jonathan W. Armbruster1 Abstract Background: Cypriniformes (minnows, carps, loaches, and suckers) is the largest group of freshwater fishes in the world (~4300 described species). Despite much attention, previous attempts to elucidate relationships using molecular and morphological characters have been incongruent. In this study we present the first phylogenomic analysis using anchored hybrid enrichment for 172 taxa to represent the order (plus three out-group taxa), which is the largest dataset for the order to date (219 loci, 315,288 bp, average locus length of 1011 bp). Results: Concatenation analysis establishes a robust tree with 97 % of nodes at 100 % bootstrap support. Species tree analysis was highly congruent with the concatenation analysis with only two major differences: monophyly of Cobitoidei and placement of Danionidae. Conclusions: Most major clades obtained in prior molecular studies were validated as monophyletic, and we provide robust resolution for the relationships among these clades for the first time. These relationships can be used as a framework for addressing a variety of evolutionary questions (e.g. phylogeography, polyploidization, diversification, trait evolution, comparative genomics) for which Cypriniformes is ideally suited. Keywords: Fish, High-throughput -
Evolution and Phylogenetic Application of the MC1R Gene in the Cobitoidea (Teleostei: Cypriniformes)
ZOOLOGICAL RESEARCH Evolution and phylogenetic application of the MC1R gene in the Cobitoidea (Teleostei: Cypriniformes) Qiong-Ying TANG1,*, Li-Xia SHI1,2, Fei LIU1, Dan YU1, Huan-Zhang LIU1,* 1 The Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China 2 University of Chinese Academy of Sciences, Beijing 100049, China ABSTRACT INTRODUCTION Fish of the superfamily Cobitoidea sensu stricto (namely loaches) exhibit extremely high diversity of The superfamily Cobitoidea is a group of small- to medium- color patterns, but so far little is known about their sized benthic fish, composed of approximately 28% of species evolutionary mechanism. Melanocortin 1 receptor of the order Cypriniformes, which is the largest group of gene (MC1R) plays an important role during the freshwater fish in the world (Nelson et al., 2016). Depending on synthesis of melanin and formation of animal body different authors, Cobitoidea includes variable families. Bohlen color patterns. In this study, we amplified and sequenced the partial MC1R gene for 44 loach & Šlechtová (2009) and Chen et al. (2009) congruently individuals representing 31 species of four families. recognized the genus Ellopostoma as a distinct new family Phylogenetic analyses yielded a topology congruent Ellopostomatidae, and proposed that Cobitoidea is composed with previous studies using multiple nuclear loci, of eight families (Catostomidae, Gyrinocheilidae, Botiidae, showing that each of the four families was Vaillantellidae, Cobitidae, Ellopostomatidae, Nemacheilidae and monophyletic with sister relationships of Botiidae+ Balitoridae). Kottelat (2012) raised genera Serpenticobitis and (Cobitidae+(Balitoridae+Nemacheilidae)). Gene Barbucca to family rank, and established Serpenticobitidae and evolutionary analyses indicated that MC1R in Barbuccidae. -
Review of the Organismal Biology of Hill Stream Loaches
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 27 November 2019 doi:10.20944/preprints201911.0322.v1 1 Review of the organismal biology of hill stream loaches. 2 Jay Willis (corresponding author), Oxford University , Department of Zoology 3 Theresa Burt De Perera, Oxford University , Department of Zoology 4 Adrian L. R. Thomas, Oxford University , Department of Zoology 5 6 Correspondence to be sent to: 7 Dr Jay Willis ([email protected]) 8 1 © 2019 by the author(s). Distributed under a Creative Commons CC BY license. Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 27 November 2019 doi:10.20944/preprints201911.0322.v1 9 10 Abstract 11 Hill stream loaches are a group of fish that inhabit fast flowing shallow freshwater. The family has 12 radiated over Asia. For some species their range is limited to single catchments; they provide an ex- 13 cellent example of biogeographical speciation on multiple scales. Hill stream loaches have a range of 14 adaptations which help them exploit environments where competitors and predators would be 15 washed away. They have streamlined bodies and keeled scales reminiscent of Mako sharks and po- 16 tentially many other as yet undiscovered drag reducing features. They adhere to rocks, crawl over 17 shallow films of water, glide over hard surfaces using ground effects and launch into currents to at- 18 tack prey or evade predation. They offer a test of modern approaches to organismal biology and a 19 broad range of biomimetic potential. In this paper we analyse what behaviour is associated with 20 their physical adaptations and how this might relate to their evolution and radiation. -
Petfish.Net Guide to Catfish and Loaches
The PetFish.Net Guide To Catfish And Loaches Part of the PetFish.Net Guide Series Table Of Contents Corydoras Catfish Albino Bristlenose Plecos Botia kubotai Questions about Cories Yoyo Loach Whiptail Catfish The Upside-Down Catfish Tadpole Madtom Catfish Siamese Algea Eater Rubber-Lipped Pleco Royal Pleco Raising Corydoras Fry Porthole Catfish The Common Pleco Pictus Catfish In Pursuit of the Panda Corydoras Otocinclus Indepth Otocinclus Kuhli Loach - A.K.A. Coolie Loach Hoplo Catfish Glass Catfish Emerald Catfish Dojo Loach Breeding The Dojo Loach Keeping And Spawning Corydoras Catfish Clown Pleco Clown Loaches The Clown Loach Chinese Algae Eater Bronze Corydoras Keeping and Spawning Albino Bristle Nose Pleco Borneo Sucker or Hillstream Loach Corydoras Catfish By: Darren Common Name: Corys Latin Name: Corydoras Origin: South America-Brazil Temperature: 77-83 Ease Of Keeping: Easy Aggressivness: Peaceful Lighting: All lightings, although it prefers dimmer lightings. Adult Size: About 6 cm Minimum Tank Size: 18g Feeding: Flakes, Algae wafers and shrimp pellets, live food, frozen food, blanched vegetables. Spawning Method: Egg-layer Corydoras (AKA cory cats and cories) are very hardy and make good beginner fish for a community tank. For species tank, the dwarf cories do better. There are generally 2 types of cory, the dwarf cory and the normal cory. Brochis are not cories. The dwarf cory is great for nano tanks because it usually remains less than 3cm long ( about 1.3 inch). They do well in community tanks too and the only special care they require is not putting them together with aggressive fish like Cichlids. Dwarf Cichlids may do well with them occasionally but avoid them if you can. -
Evolution and Ecology in Widespread Acoustic Signaling Behavior Across Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.14.296335; this version posted September 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Evolution and Ecology in Widespread Acoustic Signaling Behavior Across Fishes 2 Aaron N. Rice1*, Stacy C. Farina2, Andrea J. Makowski3, Ingrid M. Kaatz4, Philip S. Lobel5, 3 William E. Bemis6, Andrew H. Bass3* 4 5 1. Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, 159 6 Sapsucker Woods Road, Ithaca, NY, USA 7 2. Department of Biology, Howard University, 415 College St NW, Washington, DC, USA 8 3. Department of Neurobiology and Behavior, Cornell University, 215 Tower Road, Ithaca, NY 9 USA 10 4. Stamford, CT, USA 11 5. Department of Biology, Boston University, 5 Cummington Street, Boston, MA, USA 12 6. Department of Ecology and Evolutionary Biology and Cornell University Museum of 13 Vertebrates, Cornell University, 215 Tower Road, Ithaca, NY, USA 14 15 ORCID Numbers: 16 ANR: 0000-0002-8598-9705 17 SCF: 0000-0003-2479-1268 18 WEB: 0000-0002-5669-2793 19 AHB: 0000-0002-0182-6715 20 21 *Authors for Correspondence 22 ANR: [email protected]; AHB: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.09.14.296335; this version posted September 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Protecting Aquatic Diversity in Deforested Tropical Landscapes
PROTECTING AQUATIC DIVERSITY IN DEFORESTED TROPICAL LANDSCAPES Clare Lucy Wilkinson Division of Ecology and Evolution Department of Life Sciences Imperial College London & Department of Biological Sciences National University of Singapore A thesis submitted for the degree of Doctor of Philosophy 2018 ii COPYRIGHT DECLARATION _________________________________________________________________________________________________________________ The copyright of this thesis rests with the author and is made available under a Creative Commons Attribution Non-Commercial No Derivatives licence. Researchers are free to copy, distribute or transmit the thesis on the condition that they attribute it, that they do not use it for commercial purposes and that they do not alter, transform or build upon it. For any reuse or distribution, researchers must make clear to others the license terms of this work. iii ABSTRACT _________________________________________________________________________________________________________________ Global biodiversity is being lost due to extensive, anthropogenic land-use change. In Southeast Asia, biodiversity-rich forests are being logged and converted to oil-palm monocultures. The impacts of land-use change on freshwater ecosystems and biodiversity, remains largely understudied and poorly understood. I investigated the impacts of logging and conversion of tropical forest in 35 streams across a land-use gradient on freshwater fishes, a useful biotic indicator group, and a vital provisioning ecosystem service. This research was extended to quantify the benefits of riparian reserves in disturbed landscapes, and examine the interaction of land-use change with extreme climatic events. There are four key findings from this research. (1) Any modification of primary rainforest is associated with a loss of fish species and functional richness. (2) Streams in oil-palm plantations with riparian reserves of high forest quality, and a width of > 64m on either side, retain higher species richness and higher abundances of individual fish species. -
Odete Marinho Gonçalves the Origin of Stomach
ODETE MARINHO GONÇALVES THE ORIGIN OF STOMACH VERTEBRATE AND THE PARADOX OF LOSS Tese de Candidatura ao grau de Doutor em Ciências Biomédicas submetida ao Instituto de Ciências Biomédicas Abel Salazar da Universidade do Porto. Orientador – Doutor Jonathan M. Wilson Categoria – Professor auxiliar/Investigador Afiliação – Universidade de Wilfrid Laurier, Waterloo, Canadá/ CIIMAR- Centro Interdisciplinar de Investigação marinha e ambiental. Coorientador – Doutor L. Filipe C. Castro Categoria – Investigador auxiliar Afiliação – CIIMAR- Centro Interdisciplinar de Investigação do mar e ambiente. Coorientador – Professor João Coimbra Categoria – Professor emérito/ Investigador Afiliação – ICBAS- Instituto de Ciências Biomédicas Abel Salazar/ CIIMAR- Centro Interdisciplinar de Investigação marinha e ambiental. This work was conducted in laboratory of Molecular Physiology (MP) at CIIMAR- Centro Interdisciplinar de Investigação Marinha e Ambiental. The animals were maintained at BOGA- Biotério de Organismos Aquáticos. The Chapter 5 of this thesis was partially developed at Station Biologique de Roscoff (France) in laboratory of Dr. Sylvie Mazan (2013). This Chapter was done in collaboration with Dr. Renata Freitas from IBMC. Some work was also developed in Laboratory of Professor Eduardo Rocha at ICBAS- Instituto de Ciências Biomédicas Abel Salazar. This work was funded by FCT scholarship with reference: SFRH/ BD/ 79821/ 2011 “The theories exposed in this work are the exclusive responsibility of the author” AKNOWLEDGMENTS I am grateful to my supervisor Dr. Jonathan Wilson and my co-supervisor Dr. Filipe Castro. This fascinating work begun almost one decade ago (2007) with my master that allow we work together until now. Thanks to Professor João Coimbra to be so kind and to show interested in my work.