Identification of Resistance to Citrus Black Spot Using a Novel In-Field Inoculation Assay
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©2015 Stephen J. Miller ALL RIGHTS RESERVED
©2015 Stephen J. Miller ALL RIGHTS RESERVED USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS. By STEPHEN J MILLER A dissertation submitted to the Graduate School-New Brunswick Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Plant Biology Written under the direction of Dr. Ning Zhang And approved by _____________________________________ _____________________________________ _____________________________________ _____________________________________ _____________________________________ New Brunswick, New Jersey October 2015 ABSTRACT OF THE DISSERTATION USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS BY STEPHEN J MILLER Dissertation Director: Dr. Ning Zhang Fungi are the second largest kingdom of eukaryotic life, composed of diverse and ecologically important organisms with pivotal roles and functions, such as decomposers, pathogens, and mutualistic symbionts. Fungal endophyte studies have increased rapidly over the past decade, using traditional culturing or by utilizing Next Generation Sequencing (NGS) to recover fastidious or rare taxa. Despite increasing interest in fungal endophytes, there is still an enormous amount of ecological diversity that remains poorly understood. In this dissertation, I explore the fungal endophyte biodiversity associated within two plant hosts (Cornus L. species) and (Panicum virgatum L.), create a NGS pipeline, facilitating comparison between traditional culturing method and culture- independent metagenomic method. The diversity and functions of fungal endophytes inhabiting leaves of woody plants in the temperate region are not well understood. I explored the fungal biodiversity in native Cornus species of North American and Japan using traditional culturing ii techniques. Samples were collected from regions with similar climate and comparison of fungi was done using two years of collection data. -
Three Species of Neofusicoccum (Botryosphaeriaceae, Botryosphaeriales) Associated with Woody Plants from Southern China
Mycosphere 8(2): 797–808 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/2/4 Copyright © Guizhou Academy of Agricultural Sciences Three species of Neofusicoccum (Botryosphaeriaceae, Botryosphaeriales) associated with woody plants from southern China Zhang M1,2, Lin S1,2, He W2, * and Zhang Y1, * 1Institute of Microbiology, P.O. Box 61, Beijing Forestry University, Beijing 100083, PR China. 2Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, PR China. Zhang M, Lin S, He W, Zhang Y 2017 – Three species of Neofusicoccum (Botryosphaeriaceae, Botryosphaeriales) associated with woody plants from Southern China. Mycosphere 8(2), 797–808, Doi 10.5943/mycosphere/8/2/4 Abstract Two new species, namely N. sinense and N. illicii, collected from Guizhou and Guangxi provinces in China, are described and illustrated. Phylogenetic analysis based on combined ITS, tef1-α and TUB loci supported their separation from other reported species of Neofusicoccum. Morphologically, the relatively large conidia of N. illicii, which become 1–3-septate and pale yellow when aged, can be distinguishable from all other reported species of Neofusicoccum. Phylogenetically, N. sinense is closely related to N. brasiliense, N. grevilleae and N. kwambonambiense. The smaller conidia of N. sinense, which have lower L/W ratio and become 1– 2-septate when aged, differ from the other three species. Neofusicoccum mangiferae was isolated from the dieback symptoms of mango in Guangdong Province. Key words – Asia – endophytes – Morphology– Taxonomy Introduction Neofusicoccum Crous, Slippers & A.J.L. Phillips was introduced by Crous et al. (2006) for species that are morphologically similar to, but phylogenetically distinct from Botryosphaeria species, which are commonly associated with numerous woody hosts world-wide (Arx 1987, Phillips et al. -
(Botryosphaeriales) from Russia
Mycosphere 7 (7): 933–941 (2016) www.mycosphere.org ISSN 2077 7019 Article – special issue Doi 10.5943/mycosphere/si/1b/2 Copyright © Guizhou Academy of Agricultural Sciences Phaeobotryon negundinis sp. nov. (Botryosphaeriales) from Russia 1, 2 2, 3 4 4 5 Daranagama DA , Thambugala KM , Campino B , Alves A , Bulgakov TS , Phillips AJL6, Liu XZ1, Hyde KD2 1. State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No 3 1st West Beichen Road, Chaoyang District, Beijing, 100101, People’s Republic of China. 2. Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3. Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, People’s Republic of China 4. Departamento de Biologia, CESAM, Universidade de Aveiro, Campus Universitário de Santiago, 3810-193 Aveiro, Portugal. 5. Academy of Biology and Biotechnology, Southern Federal University, Rostov-on-Don 344090, Rostov region, Russia 6. University of Lisbon, Faculty of Sciences, Biosystems and Integrative Sciences Institute (BioISI), Campo Grande, 1749-016 Lisbon, Portugal Daranagama DA, Thambugala KM, Campino B, Alves A, Bulgakov TS, Phillips AJL, Liu XZ, Hyde KD 2016 – Phaeobotryon negundinis sp. nov. (Botryosphaeriales) from Russia. Mycosphere 7(7), 933–941, Doi 10.5943/mycosphere/si/1b/2 Abstract A new species of Phaeobotryon was collected from Acer negundo, Forsythia × intermedia and Ligustrum vulgare from European Russia. Morphological and phylogenetic analyses of combined ITS, β-tubulin and EF1-α sequence data revealed that these collections differ from all other species in the genus. Therefore it is introduced here as Phaeobotryon negundinis sp. -
2011 Florida Citrus Pest Management Guide: Citrus Black Spot1
Archival copy: for current recommendations see http://edis.ifas.ufl.edu or your local extension office. PP279 2011 Florida Citrus Pest Management Guide: Citrus Black Spot1 Megan M. Dewdney, Timothy S. Schubert, Mark R. Estes, and Natalia Peres2 Citrus black spot, a disease caused by the fungus fruit begins to color before harvest. Lesions first Guignardia citricarpa, causes fruit blemishes and occur on the side of the fruit with the greatest light significant yield losses and can affect all commercial exposure. False melanose symptoms appear on green citrus species and cultivars commonly grown in fruit early in the season and do not contain pycnidia. Florida. Lemons are the most susceptible, but sweet The slightly raised lesions are 1–3 mm in diameter oranges—especially mid-late maturing types such as and can vary in color from tan to chocolate brown. 'Valencia'—are also highly susceptible to this Under favorable conditions for infection, false disease. 'Hamlin' sweet oranges and melanose can resemble the mudcake symptoms of tangerine/mandarin types are moderately susceptible. melanose, but are very dark brown rather than rust Grapefruit is thought to be moderately susceptible, red. False melanose symptoms can develop into hard but there is little information available. Management spot as the season progresses. Cracked spot is a must be considered in groves intended for processing symptom that has only been observed in the and fresh market fruit. Americas and is reported to be an interaction between rust mites and G. citricarpa. Cracked spots are large, Fruit symptoms are wide ranging and have many diffuse, smooth lesions that form raised cracks different names. -
Two New Endophytic Species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China Article
Mycosphere 8(2): 1273–1288 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/2/11 Copyright © Guizhou Academy of Agricultural Sciences Two new endophytic species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China Lin S1, 2, Sun X3, He W1, Zhang Y2 1 Beijing Key Laboratory for Forest Pest Control, Beijing Forestry University, Beijing 100083, PR China 2 Institute of Microbiology, P.O. Box 61, Beijing Forestry University, Beijing 100083, PR China 3 State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China Lin S, Sun X, He W, Zhang Y 2017 – Two new endophytic species of Phyllosticta (Phyllostictaceae, Botryosphaeriales) from Southern China. Mycosphere 8(2), 1273–1288, Doi 10.5943/mycosphere/8/2/11 Abstract Phyllosticta is an important genus known to cause various leaf spots and fruit diseases worldwide on a large range of hosts. Two new endophytic species of Phyllosticta (P. dendrobii and P. illicii) are described and illustrated from Dendrobium nobile and Illicium verum in China. Phylogenetic analysis based on combined ITS, LSU, tef1-a, ACT and GPDH loci supported their separation from other species of Phyllosticta. Morphologically, P. dendrobii is most comparable with P. aplectri, while the large-sized pycnidia of P. dendrobii differentiate it from P. aplectri. Members of Phyllosticta are first reported from Dendrobium and Illicium. Key words – Asia – Botryosphaeriales – leaf spots – Multilocus phylogeny Introduction Phyllosticta Pers. was introduced by Persoon (1818) and typified by P. convallariae Pers. Many species of Phyllosticta cause leaf and fruit spots on various host plants, such as P. -
A Modern Account of the Genus Phyllosticta
Plant Pathology & Quarantine — Doi 10.5943/ppq/3/2/4 A modern account of the genus Phyllosticta Wulandari NF1, 2*, Bhat DJ3 and To-anun C1* 1Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai, Thailand. 2Microbiology Division, Research Centre for Biology, Indonesian Institute of Sciences (LIPI), Cibinong Science Centre, Cibinong, Indonesia. 3Formerly, Department of Botany, Goa University, Goa-403 206, India Wulandari NF, Bhat DJ, To-anun C 2013 – A modern account of the genus Phyllosticta. Plant Pathology & Quarantine 3(2), 145–159, doi 10.5943/ppq/3/2/4 Conidial states of Guignardia are in the genus Phyllosticta. In accordance to nomenclatural decisions of IBC Melbourne 2011, this paper validates species that were in Guignardia but are now accepted in Phyllosticta. The conclusions are arrived based on molecular analyses and morphological examination of holotypes of those species previously described in the genus Guignardia. Thirty-four species of Phyllosticta, viz. P. ampelicida (Engelm.) Aa, P. aristolochiicola R.G. Shivas, Y.P. Tan & Grice, P. bifrenariae O.L. Pereira, Glienke & Crous, P. braziliniae O.L. Pereira, Glienke & Crous, P. candeloflamma (J. Fröhlich & K.D. Hyde) Wulandari, comb. nov., P. capitalensis Henn., P. cavendishii M.H. Wong & Crous, P. citriasiana Wulandari, Gruyter & Crous, P. citribraziliensis C. Glienke & Crous, P. citricarpa (McAlpine) Aa, P. citrichinaensis X.H. Wang, K.D. Hyde & H.Y. Li, P. clematidis (Hsieh, Chen & Sivan.) Wulandari, comb. nov., P. cruenta (Fr.) J. Kickx f., P. cussoniae Cejp, P. ericarum Crous, P. garciniae (Hino & Katumoto) Motohashi, Tak. Kobay. & Yas. Ono., P. gaultheriae Aa, P. -
Main Diseases in Citrus Abstract
Revista Mexicana Ciencias Agrícolas volume 10 number 7 September 28 - November 11, 2019 Essay Main diseases in citrus Criseida Alhelí Sáenz Pérez1 Eduardo Osorio Hernández1§ Benigno Estrada Drouaillet1 Wilberth Alfredo Poot Poot1 Rafael Delgado Martínez1 2 Raúl Rodríguez Herrera 1Division of Postgraduate Studies and Research-Faculty of Engineering and Sciences-Autonomous University of Tamaulipas. Adolfo López Mateos University Center, Cd. Victoria, Tamaulipas, Mexico. Tel. 834 3181721, ext. 2111. ([email protected]; [email protected]; [email protected]; [email protected]). 2Department of Food Research-Faculty of Chemical Sciences-Autonomous University of Coahuila. Venustiano Carranza Boulevard corner with Ing. José Cárdenas Valdés, Col. República, Saltillo, Coahuila, Mexico. CP. 25280. Tel. 844 4161238. ([email protected]). §Corresponding author: [email protected]. Abstract Citrus fruits are one of the most important crops worldwide, as it is produced in 140 countries. One of the limitations for its production are diseases, they represent considerable damages in the orchards and due to this they diminish the production and cause millionaire losses in the citrus sector. The main diseases are: Phytophthora spp., Mycosphaerella citri, Lasiodiplodia theobromae, Candidatus Liberibacter spp. and citrus sadness virus (VTC). Pathogens can occur at any phenological stage of the crop and throughout the plant, whether in leaves, stems, roots or fruits. These microorganisms cause symptoms of chlorosis, mottling, less development and growth, deficiencies in the absorption of water and nutrients, rot, necrosis and in more extreme cases the death of the plant. For the management of phytopathogens there are different alternatives, the application of agrochemicals based on sulfur and copper (oxychloride and sulfate) are efficient in 70%, in addition, the use of resistant varieties (C. -
Histopathology of Black Spot Symptoms in Sweet Oranges
Eur J Plant Pathol (2012) 133:439–448 DOI 10.1007/s10658-011-9917-9 Histopathology of black spot symptoms in sweet oranges João Paulo Rodrigues Marques & Marcel Bellato Spósito & Alexandre Furtado Silveira Mello & Lilian Amorim & Matheus Mondin & Beatriz Appezzato-da-Glória Accepted: 1 December 2011 /Published online: 23 December 2011 # KNPV 2011 Abstract In Brazil, citrus black spot (CBS) caused by alterations to the epicarp and mesocarp, but in our Guignardia citricarpa is a major disease that has samples only hard spot lesions contained pycnidia. different symptoms on fruit. In this study, fruit of Both of these symptoms were accompanied by protein Citrus sinensis infected by G. citricarpa and showing inclusions. Epidermal and sub-epidermal cells located the symptoms false melanosis, freckle spot and hard in the oil-gland region were obliterated, causing alter- spot were cross-sectioned and analysed anatomically ations in these structures. All symptoms had regions and histochemically by light microscopy. Immuno- that stained strongly for lipids and phenols. histological assays were performed. All symptoms were accompanied by a thickening of the cuticle. False Keywords Citrus sinensis . Guignardia citricarpa . melanosis lesions did not contain pycnidia and Phyllosticta citricarpa . Necrotic symptoms remained restricted to the epicarp or to the first layers of the mesocarp. The stomata in this type of lesion showed phenolic compounds in the guard cells and in the sub-stomatal chamber. In some samples, the guard Introduction cells and their surrounding cells lysed, and a wound meristem began to form underneath them. Freckle spot Citrus black spot (CBS), caused by Guignardia citri- and hard spot lesions had very similar histological carpa Kiely (Phyllosticta citricarpa Van der Aa), is an important disease in Brazil. -
Citrus Disease Guide
E-265 10/10 Citrus Flash Cards S. McBride, R. French, G. Schuster and K. Ong Citrus Disease Guide The Quick ID Guide to Emerging Diseases of Texas Citrus The Quick ID Guide to Emerging Diseases of Texas Citrus enables Master Gardeners, citrus enthusiasts, and homeowners to rapidly identify potentially damaging citrus diseases. The guide consists of a set of flash cards which depict general symptoms of different diseases. Early detection of pathogens makes managing disease issues more successful. This resource is produced in part with grants from the Texas Citrus Producers Board and the USDA-Citrus Health Response Program. Contacts: Texas AgriLife Extension Service AgriLifeExtension.tamu.edu Texas Department of Agriculture www.agr.state.tx.us Texas Plant Disease Diagnostic Lab plantclinic.tamu.edu Prepared by Texas A&M AgriLife Communications AgriLife.org/communications Educational programs of the Texas AgriLife Extension Service are open to all people without regard to race, color, sex, disability, religion, age, or national origin. 1 Citrus Greening Citrus Greening Definition Citrus greening (Huanglongbing) is a bacterial disease that can greatly reduce fruit production and kill trees. This is one of the more serious citrus diseases in the world. It was first identified in Florida in 2005 and has since been reported in Georgia, South Carolina, and Louisiana. Symptoms Leaves: They appear to have blotchy mottling and are yellowing. Leaves also may look narrow and are bunched together. Symptoms may initially appear on a single shoot. Twig and branch: Dieback may occur, resulting in leafless twigs or branches. Fruit: They are smaller and lopsided. Orange-brown discoloration may appear on tissue where the fruit attaches to the tree. -
Grapevine Botryosphaeria Dieback Fungi Have Specific Aggressiveness
Grapevine Botryosphaeria dieback fungi have specific aggressiveness factor repertory involved in wood decay and stilbene metabolization Elodie Stempien, Mary-Lorène Goddard, Kim Wilhelm, Céline Tarnus, Christophe Bertsch, Julie Chong To cite this version: Elodie Stempien, Mary-Lorène Goddard, Kim Wilhelm, Céline Tarnus, Christophe Bertsch, et al.. Grapevine Botryosphaeria dieback fungi have specific aggressiveness factor repertory involved in wood decay and stilbene metabolization. PLoS ONE, Public Library of Science, 2017, 12 (12), pp.e0188766. 10.1371/journal.pone.0188766. hal-02106555 HAL Id: hal-02106555 https://hal.archives-ouvertes.fr/hal-02106555 Submitted on 23 Apr 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. RESEARCH ARTICLE Grapevine Botryosphaeria dieback fungi have specific aggressiveness factor repertory involved in wood decay and stilbene metabolization Elodie Stempien1☯, Mary-Lorène Goddard1,2☯, Kim Wilhelm1,2, CeÂline Tarnus2, Christophe Bertsch1, Julie Chong1* a1111111111 1 Universite de Haute-Alsace, Laboratoire Vigne, Biotechnologies et Environnement, Colmar, France, 2 Universite de Haute-Alsace, Laboratoire de Chimie Organique et Bioorganique, Mulhouse, France a1111111111 a1111111111 ☯ These authors contributed equally to this work. a1111111111 * [email protected] a1111111111 Abstract Grapevine trunk diseases: Eutypa dieback, esca and Botryosphaeria dieback, which inci- OPEN ACCESS dence has increased recently, are associated with several symptoms finally leading to the Citation: Stempien E, Goddard M-L, Wilhelm K, plant death. -
5 an Analysis of the Suitability of European Climate for Establishment
University of Pretoria etd – Paul, I (2006) 1 — Background and Aims Chapter 1 — Background and Aims 1.1 Citrus Citrus has been cultivated for thousands of years (Reuther et al., 1967). The fruit is popular for consumption as fresh produce and in processed products like juices and jams. It is one of the most important fruit crops in world trade and globally, in terms of volume, it is the second biggest fruit crop (after grapes) (Spiegel-Roy & Goldschmidt, 1996). In South Africa, the citrus industry significantly contributes to the economy and it is the second largest earner of foreign exchange in terms of agricultural exports (Mabiletsa, 2003). South Africa is also the third largest exporter of fresh citrus (FAO, 2002) and fruit is exported to more than 50 markets (Mabiletsa, 2003). 1.2 Citrus Black Spot Citrus Black Spot (CBS) is a fungal disease of citrus leaves and fruit that causes superficial lesions on the rind of fruit. It is caused by Guignardia citricarpa Kiely (Brodrick, 1969; Kotzé, 1981). The disease was first described from Australia by Benson (1895), and has since spread throughout many of the citrus cultivation areas of South Africa (Kotzé, 1981; Wager, 1952) and around the world (European Union, 1998, 2000a). 1.3 Phytosanitary barriers to trade and Pest Risk Assessments As a result of international travel and commerce, plant pathogens may be dispersed throughout the world. When these pathogens are introduced into a new area, and find a susceptible crop, they can have devastating consequences. Agricultural systems with an impoverished diversity are particularly vulnerable to new pathogens (Baker et al., 2000) and such introductions have had significant economic impacts (Pimentel et al., 2001). -
Evaluation of Fungicides to Control Citrus Black Spot on 'Valencia'
Citrus Section Proc. Fla. State Hort. Soc. 125:105–107. 2012. Evaluation of Fungicides to Control Citrus Black Spot on ‘Valencia’ Caused by Guignardia citricarpa in South Florida P.D. RobeRts1, K.e.M. HenDRicKs1, c. bRooKs2, anD H. Yonce2 1University of Florida, IFAS, Southwest Florida Research and Education Center, 2685 SR 29 N, Immokalee, FL 34142 2KAC Agricultural Research, Inc., Deland, FL 32720 AdditionAl index words. exotic disease, fungus, disease management A field trial to evaluate the efficacy of fungicides and timing of spray regimes to control the recently introduced fungus, Guignardia citricarpa, causing citrus black spot (CBS) was initiated. The trial was established at a commercial site in a block of ‘Valencia’ that was identified with CBS in 2011. Fifteen treatments including ten products were applied at intervals starting after fruit harvest and continuing through September. Ratings on the number of the symptomatic fruit on the tree and the number of dropped fruit with symptoms were taken in Dec. 2011 and Feb. and Mar. 2012. In general, most of the data from fungicidal regimes were not statistically different from the untreated plants in prevent- ing symptoms of CBS. Additional field trials are needed to more fully investigate timing of applications and products for efficacy in suppression of this disease. Citrus black spot (CBS), an exotic fungal disease of citrus Copper products have been used as a fungicide against several caused by Guignardia citricarpa Viala & Ravaz (1892) nom fungal diseases on citrus throughout Florida’s history (Driscoll, cons. was identified in Collier County, South Florida in Apr. 2009 2004).