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Percy Fitzpatrick Institute of African Ornithology Annual Report
Percy FitzPatrick Institute DST/NRF Centre of Excellence Annual Report January – December 2009 Department of Zoology University of Cape Town Private Bag X3 Rondebosch 7701 SOUTH AFRICA +27 (0)21 650 3290/1 [email protected] http://www.fitzpatrick.uct.ac.za University of Cape Town Contents Director’s report 1 Staff and Students 3 Research Programmes & Initiatives • Systematics and Biogeography 5 • Cooperation and Sociality in birds 13 • Rarity and Conservation of African birds 19 • Island Conservation 26 • Seabird Research 28 • Raptor Research 33 • Spatial Parasitology and Epidemiology 36 • Pattern-process Linkages in Landscape 39 Ecology • Environmental & Resource Economics 41 • Climate Change Vulnerability and 44 Adaptation • And a Miscellany 49 Conservation Biology Masters 53 Board Members: Programme Niven Library 55 Mr M. Anderson (BirdLife SA) Scientific Publications 59 Mr H. Amoore (UCT, Registrar) Dr G. Avery (Wildlife and Environment Society of Southern Africa) Semi-popular Publications 63 Prof. K. Driver (UCT, Dean of Science, Chairman) Prof. P.A.R. Hockey (UCT, Director, PFIAO) Seminars 2009 65 Assoc. Prof. J. Hoffmann (UCT, HoD, Zoology) Mr P.G. Johnson (co-opted) Dr J. McNamara (UCT, Development & Alumni Dept) Prof. M.E. Meadows (UCT, HoD, ENGEO) Mr C.A.F. Niven (FitzPatrick Memorial Trust) Mr J.D.F. Niven (FitzPatrick Memorial Trust) Mr P.N.F. Niven (FitzPatrick Memorial Trust) Mr F. van der Merwe (co-opted) Prof. D. Visser (UCT, Chairman, URC) The Annual Report may also be viewed on the Percy FitzPatrick Institute's website: http://www.fitzpatrick.uct.ac.za Director’s Report Director’s Report To say that 2009 was a busy and eventful year would be an understatement! Early in January, Doug Loewenthal, Graeme Oatley and I participated in the Biodiversity Academy at De Hoop Nature Reserve. -
Apalises Martins Bar-Throated Apalis Banded Martin Rudd's Apalis
Apalises Martins Bar-Throated Apalis Banded Martin Rudd's Apalis Brown-Throated Martin Yellow-Breasted Apalis Rock Martin Avocets Sand Martin Pied Avocet Moorhens Babblers Common Moorhen Arrow-Marked Babbler Lesser Moorhen Southern Pied Babbler Mousebirds Barbets Red-Faced Mousebird Acacia Pied Barbet Speckled Mousebird Black-Collared Barbet Nicators Crested Barbet Eastern (Yellow-Spotted) Nicator Bat Hawks Nightingales Bat Hawk Thrush Nightingale Batises Nightjars Cape Batis European Nightjar Chinspot Batis Fiery-Necked Nightjar Bee-Eaters Freckled Nightjar Blue-Cheeked Bee-Eater Pennant-Winged Nightjar European Bee-Eater Rufous-Cheeked Nightjar Little Bee-Eater Square-Tailed (Mozambique) Nightjar Southern Carmine Bee-Eater Oriole Swallow-Tailed Bee-Eater (Eastern) Black-Headed Oriole White-Fronted Bee-Eater African Golden Oriole Bishops Eurasian (European) Golden Oriole Southern Red Bishop Ospreys Yellow Bishop Osprey Yellow-Crowned Bishop Ostriches Bitterns Common Ostrich Dwarf Bittern Owls Little Bittern African Barred Owlet Boubous African Grass-Owl Southern Boubou African Scops-Owl Tropical Boubou African Wood-Owl Bulbuls Barn Owl Dark-Capped (Black-Eyed) Bulbul Cape-Eagle Owl Terrestrial Brownbul (Bulbul) Marsh Owl Buntings Pearl-Spotted Owlet Cape Bunting Pel's Fishing-Owl Cinnamon-Breasted (Rock) Bunting Southern White-Faced Scops-Owl Golden-Breasted Bunting Spotted Eagle-Owl Bustards Verreaux's (Giant) Eagle-Owl Denham's (Stanley's) Bustard Oxpeckers Kori Bustard Red-Billed Oxpecker Buttonquails Yellow-Billed Oxpecker Small -
Disaggregation of Bird Families Listed on Cms Appendix Ii
Convention on the Conservation of Migratory Species of Wild Animals 2nd Meeting of the Sessional Committee of the CMS Scientific Council (ScC-SC2) Bonn, Germany, 10 – 14 July 2017 UNEP/CMS/ScC-SC2/Inf.3 DISAGGREGATION OF BIRD FAMILIES LISTED ON CMS APPENDIX II (Prepared by the Appointed Councillors for Birds) Summary: The first meeting of the Sessional Committee of the Scientific Council identified the adoption of a new standard reference for avian taxonomy as an opportunity to disaggregate the higher-level taxa listed on Appendix II and to identify those that are considered to be migratory species and that have an unfavourable conservation status. The current paper presents an initial analysis of the higher-level disaggregation using the Handbook of the Birds of the World/BirdLife International Illustrated Checklist of the Birds of the World Volumes 1 and 2 taxonomy, and identifies the challenges in completing the analysis to identify all of the migratory species and the corresponding Range States. The document has been prepared by the COP Appointed Scientific Councilors for Birds. This is a supplementary paper to COP document UNEP/CMS/COP12/Doc.25.3 on Taxonomy and Nomenclature UNEP/CMS/ScC-Sc2/Inf.3 DISAGGREGATION OF BIRD FAMILIES LISTED ON CMS APPENDIX II 1. Through Resolution 11.19, the Conference of Parties adopted as the standard reference for bird taxonomy and nomenclature for Non-Passerine species the Handbook of the Birds of the World/BirdLife International Illustrated Checklist of the Birds of the World, Volume 1: Non-Passerines, by Josep del Hoyo and Nigel J. Collar (2014); 2. -
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Ornithological Observations http://oo.adu.org.za An electronic journal published by the Animal Demography Unit at the University of Cape Town and BirdLife South Africa Ornithological Observations accepts papers containing faunistic information about birds. This includes descriptions of distribution, behaviour, breeding, foraging, food, movement, measurements, habitat and plumage. It will also consider for publication a variety of other interesting or relevant ornithological material: reports of projects and conferences, annotated checklists for a site or region, specialist bibliographies, and any other interesting or relevant material. Editor: Arnold van der Westhuizen FORAGING BEHAVIOUR OF SOME MEMBERS OF THE GLEANING GUILD IN SOUTHERN AFRICA Warwick Fraser Recommended citation format: Fraser W 2015. Foraging behaviour of some members of the gleaning guild in southern Africa. Ornithological Observations, Vol 6: 51-56 URL: http://oo.adu.org.za/content.php?id=177 Published online: 29 April 2015 - ISSN 2219-0341 - Ornithological Observations, Vol 6: 51-56 51 FORAGING BEHAVIOUR OF SOME MEMBERS OF THE GLEANING GUILD IN SOUTHERN AFRICA Warwick Fraser* PO Box 1511, Nottingham Road, 3280. * Corresponding author: [email protected] Introduction There are a number of small bird species that forage within the leaf zone of trees and shrubs feeding off arthropods. Although not clearly defined these birds have been termed the "foliage gleaners" and the "gleaning guild". In South Africa there are some 30 species that can be classified as being foliage gleaners and these are birds that weigh from 6 to 15 g and belong to the families Sylvidae and Muscicapidae. Each woodland and forest habitat has a number of these foliage gleaning species that occur in varying numbers and these co-exist apparently sharing a broad food source. -
2009 Trip Report KENYA
KENYA and TANZANIA TRIP REPORT Sept 25-Oct 23, 2009 PART 1 - Classic Kenya text and photos by Adrian Binns Sept 25 / Day 1: Blue Post Thika; Castle Forest We began the morning with an unexpected Little Sparrowhawk followed by a Great Sparrowhawk, both in the skies across the main road from the Blue Post Hotel in Thika. The lush grounds of the Blue Post are bordered by the twin waterfalls of the Chania and Thika, both rivers originating from the nearby Aberdare Mountain Range. It is a good place to get aquatinted with some of the more common birds, especially as most can be seen in close proximity and very well. Eastern Black-headed Oriole, Cinnamon-chested Bee- eater, Little Bee-eater, White-eyed Slaty Flycatcher, Collared Sunbird, Bronzed Mannikin, Speckled Mousebird and Yellow-rumped Tinkerbird were easily found. Looking down along the river course and around the thundering waterfall we found a pair of Giant Kingfishers as well as Great Cormorant, Grey Heron and Common Sandpiper, and two Nile Monitors slipped behind large boulders. A fruiting tree provided a feast for Yellow-rumped Seedeaters, Violet-backed Starlings, Spot-flanked Barbet (right), White-headed Barbet as a Grey-headed Kingfisher, an open woodland bird, made sorties from a nearby perch. www.wildsidenaturetours.com www.eastafricanwildlifesafaris.com © Adrian Binns Page 1 It was a gorgeous afternoon at the Castle Forest Lodge set deep in forested foothills of the southern slope of Mt. Kenya. While having lunch on the verandah, overlooking a fabulous valley below, we had circling Long-crested Eagle (above right), a distant Mountain Buzzard and African Harrier Hawk. -
A Guide to the Birds of Barrow Island
A Guide to the Birds of Barrow Island Operated by Chevron Australia This document has been printed by a Sustainable Green Printer on stock that is certified carbon in joint venture with neutral and is Forestry Stewardship Council (FSC) mix certified, ensuring fibres are sourced from certified and well managed forests. The stock 55% recycled (30% pre consumer, 25% post- Cert no. L2/0011.2010 consumer) and has an ISO 14001 Environmental Certification. ISBN 978-0-9871120-1-9 Gorgon Project Osaka Gas | Tokyo Gas | Chubu Electric Power Chevron’s Policy on Working in Sensitive Areas Protecting the safety and health of people and the environment is a Chevron core value. About the Authors Therefore, we: • Strive to design our facilities and conduct our operations to avoid adverse impacts to human health and to operate in an environmentally sound, reliable and Dr Dorian Moro efficient manner. • Conduct our operations responsibly in all areas, including environments with sensitive Dorian Moro works for Chevron Australia as the Terrestrial Ecologist biological characteristics. in the Australasia Strategic Business Unit. His Bachelor of Science Chevron strives to avoid or reduce significant risks and impacts our projects and (Hons) studies at La Trobe University (Victoria), focused on small operations may pose to sensitive species, habitats and ecosystems. This means that we: mammal communities in coastal areas of Victoria. His PhD (University • Integrate biodiversity into our business decision-making and management through our of Western Australia) -
Beyond Fish Edna Metabarcoding: Field Replicates Disproportionately Improve the Detection of Stream Associated Vertebrate Specie
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.26.437227; this version posted March 26, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 2 3 Beyond fish eDNA metabarcoding: Field replicates 4 disproportionately improve the detection of stream 5 associated vertebrate species 6 7 8 9 Till-Hendrik Macher1, Robin Schütz1, Jens Arle2, Arne J. Beermann1,3, Jan 10 Koschorreck2, Florian Leese1,3 11 12 13 1 University of Duisburg-Essen, Aquatic Ecosystem Research, Universitätsstr. 5, 45141 Essen, 14 Germany 15 2German Environmental Agency, Wörlitzer Platz 1, 06844 Dessau-Roßlau, Germany 16 3University of Duisburg-Essen, Centre for Water and Environmental Research (ZWU), Universitätsstr. 17 3, 45141 Essen, Germany 18 19 20 21 22 Keywords: birds, biomonitoring, bycatch, conservation, environmental DNA, mammals 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.26.437227; this version posted March 26, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 24 Abstract 25 Fast, reliable, and comprehensive biodiversity monitoring data are needed for 26 environmental decision making and management. Recent work on fish environmental 27 DNA (eDNA) metabarcoding shows that aquatic diversity can be captured fast, reliably, 28 and non-invasively at moderate costs. -
Resolving Phylogenetic Relationships Within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications
GBE Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications Paweł Mackiewicz1,*, Adam Dawid Urantowka 2, Aleksandra Kroczak1,2, and Dorota Mackiewicz1 1Department of Bioinformatics and Genomics, Faculty of Biotechnology, University of Wrocław, Poland 2Department of Genetics, Wroclaw University of Environmental and Life Sciences, Poland *Corresponding author: E-mail: pamac@smorfland.uni.wroc.pl. Accepted: September 30, 2019 Abstract Mitochondrial genes are placed on one molecule, which implies that they should carry consistent phylogenetic information. Following this advantage, we present a well-supported phylogeny based on mitochondrial genomes from almost 300 representa- tives of Passeriformes, the most numerous and differentiated Aves order. The analyses resolved the phylogenetic position of para- phyletic Basal and Transitional Oscines. Passerida occurred divided into two groups, one containing Paroidea and Sylvioidea, whereas the other, Passeroidea and Muscicapoidea. Analyses of mitogenomes showed four types of rearrangements including a duplicated control region (CR) with adjacent genes. Mapping the presence and absence of duplications onto the phylogenetic tree revealed that the duplication was the ancestral state for passerines and was maintained in early diverged lineages. Next, the duplication could be lost and occurred independently at least four times according to the most parsimonious scenario. In some lineages, two CR copies have been inherited from an ancient duplication and highly diverged, whereas in others, the second copy became similar to the first one due to concerted evolution. The second CR copies accumulated over twice as many substitutions as the first ones. However, the second CRs were not completely eliminated and were retained for a long time, which suggests that both regions can fulfill an important role in mitogenomes. -
Birding Tour to Ghana Specializing on Upper Guinea Forest 12–26 January 2018
Birding Tour to Ghana Specializing on Upper Guinea Forest 12–26 January 2018 Chocolate-backed Kingfisher, Ankasa Resource Reserve (Dan Casey photo) Participants: Jim Brown (Missoula, MT) Dan Casey (Billings and Somers, MT) Steve Feiner (Portland, OR) Bob & Carolyn Jones (Billings, MT) Diane Kook (Bend, OR) Judy Meredith (Bend, OR) Leaders: Paul Mensah, Jackson Owusu, & Jeff Marks Prepared by Jeff Marks Executive Director, Montana Bird Advocacy Birding Ghana, Montana Bird Advocacy, January 2018, Page 1 Tour Summary Our trip spanned latitudes from about 5° to 9.5°N and longitudes from about 3°W to the prime meridian. Weather was characterized by high cloud cover and haze, in part from Harmattan winds that blow from the northeast and carry particulates from the Sahara Desert. Temperatures were relatively pleasant as a result, and precipitation was almost nonexistent. Everyone stayed healthy, the AC on the bus functioned perfectly, the tropical fruits (i.e., bananas, mangos, papayas, and pineapples) that Paul and Jackson obtained from roadside sellers were exquisite and perfectly ripe, the meals and lodgings were passable, and the jokes from Jeff tolerable, for the most part. We detected 380 species of birds, including some that were heard but not seen. We did especially well with kingfishers, bee-eaters, greenbuls, and sunbirds. We observed 28 species of diurnal raptors, which is not a large number for this part of the world, but everyone was happy with the wonderful looks we obtained of species such as African Harrier-Hawk, African Cuckoo-Hawk, Hooded Vulture, White-headed Vulture, Bat Hawk (pair at nest!), Long-tailed Hawk, Red-chested Goshawk, Grasshopper Buzzard, African Hobby, and Lanner Falcon. -
The Relationships of the Starlings (Sturnidae: Sturnini) and the Mockingbirds (Sturnidae: Mimini)
THE RELATIONSHIPS OF THE STARLINGS (STURNIDAE: STURNINI) AND THE MOCKINGBIRDS (STURNIDAE: MIMINI) CHARLESG. SIBLEYAND JON E. AHLQUIST Departmentof Biologyand PeabodyMuseum of Natural History,Yale University, New Haven, Connecticut 06511 USA ABSTRACT.--OldWorld starlingshave been thought to be related to crowsand their allies, to weaverbirds, or to New World troupials. New World mockingbirdsand thrashershave usually been placed near the thrushesand/or wrens. DNA-DNA hybridization data indi- cated that starlingsand mockingbirdsare more closelyrelated to each other than either is to any other living taxon. Some avian systematistsdoubted this conclusion.Therefore, a more extensiveDNA hybridizationstudy was conducted,and a successfulsearch was made for other evidence of the relationshipbetween starlingsand mockingbirds.The resultssup- port our original conclusionthat the two groupsdiverged from a commonancestor in the late Oligoceneor early Miocene, about 23-28 million yearsago, and that their relationship may be expressedin our passerineclassification, based on DNA comparisons,by placing them as sistertribes in the Family Sturnidae,Superfamily Turdoidea, Parvorder Muscicapae, Suborder Passeres.Their next nearest relatives are the members of the Turdidae, including the typical thrushes,erithacine chats,and muscicapineflycatchers. Received 15 March 1983, acceptedI November1983. STARLINGS are confined to the Old World, dine thrushesinclude Turdus,Catharus, Hylocich- mockingbirdsand thrashersto the New World. la, Zootheraand Myadestes.d) Cinclusis -
Beyond Fish Edna Metabarcoding: Field Replicates Disproportionately Improve the Detection of Stream Associated Vertebrate Species
Metabarcoding and Metagenomics 5: 59–71 DOI 10.3897/mbmg.5.66557 Research Article Beyond fish eDNA metabarcoding: Field replicates disproportionately improve the detection of stream associated vertebrate species Till-Hendrik Macher1, Robin Schütz1, Jens Arle2, Arne J. Beermann1,3, Jan Koschorreck2, Florian Leese1,3 1 University of Duisburg-Essen, Aquatic Ecosystem Research, Universitätsstr. 5, 45141 Essen, Germany 2 German Environment Agency, Wörlitzer Platz 1, 06844 Dessau-Roßlau, Germany 3 University of Duisburg-Essen, Centre for Water and Environmental Research (ZWU), Universitätsstr. 3, 45141 Essen, Germany Corresponding author: Till-Hendrik Macher ([email protected]) Academic editor: Pieter Boets | Received 26 March 2021 | Accepted 10 June 2021 | Published 13 July 2021 Abstract Fast, reliable, and comprehensive biodiversity monitoring data are needed for environmental decision making and management. Recent work on fish environmental DNA (eDNA) metabarcoding shows that aquatic diversity can be captured fast, reliably, and non-invasively at moderate costs. Because water in a catchment flows to the lowest point in the landscape, often a stream, it can col- lect traces of terrestrial species via surface or subsurface runoff along its way or when specimens come into direct contact with water (e.g., when drinking). Thus, fish eDNA metabarcoding data can provide information on fish but also on other vertebrate species that live in riparian habitats. This additional data may offer a much more comprehensive approach for assessing vertebrate diversity at no additional costs. Studies on how the sampling strategy affects species detection especially of stream-associated communities, however, are scarce. We therefore performed an analysis on the effects of biological replication on both fish as well as (semi-)terrestrial species detection. -
Berriquin LWMP Wildlife
Berriquin Wildlife Murray Land & Water Management Plan Wildlife Survey 2005-2006 Matthew Herring David Webb Michael Pisasale INTRODUCTION Why do a wildlife survey? 106 farms and were surveyed One of the great things about between June 2005 and March living in rural Australia is all the 2006. They incorporated a range wildlife that we share the land- of vegetation types (e.g. Black scape with. Historically, humans Box Woodland) as well as reveg- have impacted on the survival of etation on previously cleared many native plants and animals. land and constructed wetlands. Fortunately, there is a grow- Methods used to survey wildlife ing commitment in the country included: to wildlife conservation on the farm. As we improve our knowl- - Bird surveys edge and understanding of the - Log rolling for reptiles and local landscape and the animals frogs and plants that live in it we will - Spotlighting for mammals, rep be in a much better position to tiles and nocturnal birds conserve and enhance our natu- - Elliot traps for small mammals ral heritage for future genera- and reptiles tions. - Pitfall trapping for reptiles and frogs This wildlife survey was an ini- - Harp traps for bats tiative of the Berriquin Land & - Using the “Anabat” to record Water Management Plan (LWMP) bat calls M.Herring Working Group and is the largest - Call broadcasting to attract Wildlife expert Adam Bester and most extensive ever un- birds with 11 Little Forest Bats, one dertaken in the area. Berriquin of Berriquin’s most abundant was one of four LWMP areas that Other targeted methods were mammals.