Vaccinia Virus As a Tool to Study Novel Mechanisms of Host Cell Contraction and Blebbing
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Vaccinia virus as a tool to study novel mechanisms of host cell contraction and blebbing Charlotte Hope Durkin University College London and Cancer Research UK London Research Institute PhD Supervisor: Michael Way A thesis submitted for the degree of Doctor of Philosophy University College London September 2012 1 Declaration I, Charlotte Durkin, confirm that the work presented in this thesis is my own. Where information has been derived from other sources, I confirm that this has been indicated in the thesis. 2 Abstract Vaccinia is a widely studied member of the poxvirus family. Throughout its life cycle, vaccinia manipulates cellular processes of the host to aid its replication and spread. Early in infection vaccinia stimulates transient host cell contraction, associated with dynamic plasma membrane blebbing and migration, reminiscent of the RhoA-ROCK regulated amoeboid migration of cancer cells. Cell contraction required the expression of early vaccinia genes whilst subsequent re-spreading required late vaccinia genes. Using a virus that does not express the vaccinia protein F11, I showed that F11 was required for virus infection to stimulate contraction. However, using a highly attenuated vaccinia strain rescued with wild type F11, MVA-F11, I found that cell contraction additionally required other vaccinia proteins. Live cell imaging of F11-GFP revealed that F11 is recruited to the plasma membrane during blebbing, further supporting a role for F11 in regulating these membrane events. Despite previous evidence from this laboratory showing F11 interacts with RhoA, I found that cell contraction was independent of RhoA. Instead vaccinia induced contraction required RhoC to ROCK signalling. Furthermore, using a small siRNA screen of several Rho GTPases, I discovered that RhoD negatively regulates vaccinia-induced contraction. I suggest that RhoD can supress cell contraction in uninfected and ∆F11L-infected cells by inhibiting RhoC activation, and suggest that RhoD signalling is inhibited during infection to allow for efficient cell contraction. 3 Acknowledgements I have just signed a declaration to say this work is my own but I would like to acknowledge the people that have helped me get there by offering scientific advice, technical help, encouragement or just general comic relief! Firstly, I would like to give a big thanks to my supervisor Michael. Thank you for all your advice and support during the past four years but especially recently with help on the thesis and the long job hunt! Sara, we have taken this PhD journey together! Thank you, I don’t think I would have made it without you! I hope I have given you the same support, with our alternating waves of despair and reassurance. How am I going to do a PostDoc without you next to me? Ashley, I am so glad you were lured to the lab. It has been lovely working with you and you have become a great friend, why do you have to go off to the States as well? Theresa, thank you for being the heart of the lab family, for organising us all and keeping us in line. You also make a mean cocktail and throw the now world-famous Burn’s Night suppers. I will be in London, can I still come? Jasmine, thank you for always giving great scientific insights and suggestions but more importantly for making me laugh and being my bench buddy! Thank you to my virology teacher, Antonio, for always asking the challenging questions and for providing comic relief with stories and photos of you beautiful daughter! Judy, it was ‘quite’ nice to work with you. Of course by that I mean it was a joy to work with you and I missed you very much when you left! Dave I owe you a beer (or several hundred!) for all your help with imaging and blebs, and patiently explaining image analysis to a layperson! Xenia, thank you for making me feel I was good at explaining techniques (even if you were pretending)! Good luck with the PhD, you will be great! Joe for lowering the tone of the lab, I’m not sure that warrants thanks?! Yutaka, thank you for the helpful discussions on F11. To Morag, Amy and Mark, I loved working with you and was extremely sad when you all left! I hope you all realise how grateful I am for you for all the help you gave me during my PhD! Joao, you were a great teacher and despite leaving 3 months after I started, you have always answered all my questions and provided continued reassurance and encouragement! 4 Thank you to everyone in the LRI equipment park for their expertise, saving me so much experimental time and explaining techniques with lots of patience. Thank you to Sally and Sophie (and Sabina and Erin), the graduate team at the LRI, for making the graduate programme so enjoyable and organised and for tirelessly answering all our questions and concerns. And finally, I would like to thank my cheerleaders, this includes lots of friends and family members but especially my parents, my sisters and most of all Mike who has had to put up with more of my stress than anyone else! 5 Table of Contents Abstract ................................................................................................................ 3 Acknowledgements ............................................................................................. 4 Table of figures .................................................................................................... 9 List of tables ...................................................................................................... 11 Abbreviations .................................................................................................... 12 Chapter 1. Introduction .................................................................................. 14 1.1 Rho Family GTPases ............................................................................ 14 1.1.1 Overview of Rho GTPases - history and biology .............................. 14 1.1.2 The molecular switch and Rho GTPase structure ............................ 16 1.1.3 Regulation of Rho GTPases ............................................................. 21 1.2 RhoA and cell migration ....................................................................... 25 1.2.1 RhoA signalling and cell migration .................................................... 26 1.2.2 RhoA and ROCK .............................................................................. 27 1.2.3 RhoA and DRF ................................................................................. 32 1.2.4 Cortical contraction and blebbing ..................................................... 34 1.3 Rho GTPase subfamilies ...................................................................... 39 1.3.2 Crosstalk between Rho GTPases ..................................................... 53 1.4 Vaccinia virus ........................................................................................ 56 1.4.1 Poxviruses ........................................................................................ 56 1.4.2 Vaccinia virus .................................................................................... 57 1.4.3 Vaccinia life cycle ............................................................................. 60 1.4.4 Virus induced migration .................................................................... 64 1.4.5 MVA versus WR ............................................................................... 65 1.4.6 F11 and cell migration ...................................................................... 66 1.4.7 The role of F11 in virus release and spread ..................................... 68 1.5 The aims of this thesis ......................................................................... 69 Chapter 2. Materials & Methods .................................................................... 70 2.1 General buffers and culture media ...................................................... 70 2.1.1 General Buffers ................................................................................. 70 2.1.2 Cell Culture Media ............................................................................ 70 2.1.3 Bacteriological Media ........................................................................ 72 2.2 Cell culture ............................................................................................. 72 2.2.1 Cell culture and freezing stocks ........................................................ 72 2.2.2 Transfection ...................................................................................... 73 2.2.3 Generation of stable cell lines ........................................................... 75 2.3 Molecular Biology ................................................................................. 76 2.3.1 General Buffers/Methods .................................................................. 76 2.3.2 Expression vectors ........................................................................... 76 2.3.3 Polymerase chain reaction ............................................................... 77 2.3.4 Sub-cloning ....................................................................................... 78 2.3.5 Chemically competent E.Coli ............................................................ 78 2.3.6 Transformation of bacteria ................................................................ 79 2.3.7 Colony screening by PCR ................................................................. 79 2.3.8 Plasmid DNA purification .................................................................. 80 2.3.9 DNA sequencing