Cyclosporiasis
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Cyclospora Cayetanensis Infection in Transplant Traveller: a Case Report of Outbreak Małgorzata Bednarska1*, Anna Bajer1, Renata Welc-Falęciak1 and Andrzej Pawełas2
Bednarska et al. Parasites & Vectors (2015) 8:411 DOI 10.1186/s13071-015-1026-8 SHORT REPORT Open Access Cyclospora cayetanensis infection in transplant traveller: a case report of outbreak Małgorzata Bednarska1*, Anna Bajer1, Renata Welc-Falęciak1 and Andrzej Pawełas2 Abstract Background: Cyclospora cayetanensis is a protozoan parasite causing intestinal infections. A prolonged course of infection is often observed in immunocompromised individuals. In Europe, less than 100 cases of C. cayetanensis infection have been reported to date, almost all of which being diagnosed in individuals after travelling abroad. Findings: We described cases of three businessmen who developed acute traveller’s diarrhoea after they returned to Poland from Indonesia. One of the travellers was a renal transplant recipient having ongoing immunosuppressive treatment. In each case, acute and prolonged diarrhoea and other intestinal disorders occurred. Oocysts of C. cayetanensis were identified in faecal smears of two of the travellers (one immunosuppressed and one immunocompetent). Diagnosis was confirmed by the successful amplification of parasite DNA (18S rDNA). A co-infection with Blastocystis hominis was identified in the immunocompetent man. Conclusions: Infection of C. cayetanensis shall be considered as the cause of prolonged acute diarrhoea in immunocompromised patients returning from endemic regions. Findings status of the infected individuals. Cyclosporiasis is more Cyclospora cayetanenis is a human parasite transmitted severe in children and immunosupressed individuals, i.e., through the faecal-oral route which infects the small intes- HIV/AIDS patients [15–17]. tine [1, 2]. Fresh fruits, herbs and vegetables (raspberries, In this paper, an outbreak of cyclosporiasis in three trav- blackberries, basil, lettuce) are foods most commonly iden- ellers, including one renal transplant recipient, returning tified as a source of human infection [3–7]. -
2013 Multistate Outbreaks of Cyclospora Cayetanensis Infections Associated with Fresh Produce: Focus on the Texas Investigations
Epidemiol. Infect. (2015), 143, 3451–3458. © Cambridge University Press 2015 doi:10.1017/S0950268815000370 2013 multistate outbreaks of Cyclospora cayetanensis infections associated with fresh produce: focus on the Texas investigations F. ABANYIE1*, R. R. HARVEY2,3,J.R.HARRIS1,R.E.WIEGAND1,L.GAUL4, M. DESVIGNES-KENDRICK5,K.IRVIN6,I.WILLIAMS3,R.L.HALL1, B. HERWALDT1,E.B.GRAY1,Y.QVARNSTROM1,M.E.WISE3,V.CANTU4, P. T. CANTEY1,S.BOSCH3,A.J.DASILVA1,6,A.FIELDS6,H.BISHOP1, A. WELLMAN6,J.BEAL6,N.WILSON1,2,A.E.FIORE1,R.TAUXE3, S. LANCE3,6,L.SLUTSKER1,M.PARISE1, and the Multistate Cyclosporiasis Outbreak Investigation Team† 1 Center for Global Health, Division of Parasitic Diseases and Malaria, Centers for Disease Control and Prevention, Atlanta, GA, USA 2 Epidemic Intelligence Service, Centers for Disease Control and Prevention, Atlanta, GA, USA 3 National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA 4 Texas Department of State Health Services, Austin, TX, USA 5 Fort Bend County Health & Human Services, Rosenberg, TX, USA 6 United States Food and Drug Administration, College Park, MD, USA Received 8 October 2014; Final revision 10 February 2015; Accepted 10 February 2015; first published online 13 April 2015 SUMMARY The 2013 multistate outbreaks contributed to the largest annual number of reported US cases of cyclosporiasis since 1997. In this paper we focus on investigations in Texas. We defined an outbreak-associated case as laboratory-confirmed cyclosporiasis in a person with illness onset between 1 June and 31 August 2013, with no history of international travel in the previous 14 days. -
(Alveolata) As Inferred from Hsp90 and Actin Phylogenies1
J. Phycol. 40, 341–350 (2004) r 2004 Phycological Society of America DOI: 10.1111/j.1529-8817.2004.03129.x EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES1 Brian S. Leander2 and Patrick J. Keeling Canadian Institute for Advanced Research, Program in Evolutionary Biology, Departments of Botany and Zoology, University of British Columbia, Vancouver, British Columbia, Canada Three extremely diverse groups of unicellular The Alveolata is one of the most biologically diverse eukaryotes comprise the Alveolata: ciliates, dino- supergroups of eukaryotic microorganisms, consisting flagellates, and apicomplexans. The vast phenotypic of ciliates, dinoflagellates, apicomplexans, and several distances between the three groups along with the minor lineages. Although molecular phylogenies un- enigmatic distribution of plastids and the economic equivocally support the monophyly of alveolates, and medical importance of several representative members of the group share only a few derived species (e.g. Plasmodium, Toxoplasma, Perkinsus, and morphological features, such as distinctive patterns of Pfiesteria) have stimulated a great deal of specula- cortical vesicles (syn. alveoli or amphiesmal vesicles) tion on the early evolutionary history of alveolates. subtending the plasma membrane and presumptive A robust phylogenetic framework for alveolate pinocytotic structures, called ‘‘micropores’’ (Cavalier- diversity will provide the context necessary for Smith 1993, Siddall et al. 1997, Patterson -
A Multistate Outbreak of Cyclosporiasis: a Classroom Case Study (Instructor Version)
A Multistate Outbreak of Cyclosporiasis A Classroom Case Study INSTRUCTOR’S VERSION Original investigators: Barbara L. Herwaldt, MD, MPH1, Marta-Louise Ackers, MD1, Michael J. Beach, PhD1, and the Cyclospora Working Group 1Centers for Disease Control and Prevention Case study and instructor’s guide created by: Jeanette K. Stehr-Green, MD Reviewed by: Charles Haddad, Robert Tauxe, MD, MPH, Roderick C. Jones, MPH NOTE: This case study is based on real-life investigations undertaken in 1996 and 1997 in the United States and abroad that were published in the Morbidity and Mortality Weekly Report, the New England Journal of Medicine, and the Annals of Internal Medicine. The case study, however, is not a factual accounting of the details from these investigations. Some aspects of the investigations (and the circumstances leading up to them) have been altered to assist in meeting the desired teaching objectives. Some details have been fabricated to provide continuity to the storyline. Target audience: students with minimal knowledge of basic epidemiologic concepts who are interested in learning more about the practice of epidemiology including participants in the Knight Journalism Fellowship Program. Level of case study: basic Teaching materials required: none Time required: approximately 3 hours Language: English Training materials funded by: John S. and James L. Knight Foundation and the Centers for Disease Control and Prevention August 2004 U.S. DEPARTMENT OF HEALTH AND HUMAN SERVICES Public Health Service Centers for Disease Control and -
Cyclosporiasis: an Update
Cyclosporiasis: An Update Cirle Alcantara Warren, MD Corresponding author Epidemiology Cirle Alcantara Warren, MD Cyclosporiasis has been reported in three epidemiologic Center for Global Health, Division of Infectious Diseases and settings: sporadic cases among local residents in an International Health, University of Virginia School of Medicine, MR4 Building, Room 3134, Lane Road, Charlottesville, VA 22908, USA. endemic area, travelers to or expatriates in an endemic E-mail: [email protected] area, and food- or water-borne outbreaks in a nonendemic Current Infectious Disease Reports 2009, 11:108–112 area. In tropical and subtropical countries (especially Current Medicine Group LLC ISSN 1523-3847 Haiti, Guatemala, Peru, and Nepal) where C. cayetanen- Copyright © 2009 by Current Medicine Group LLC sis infection is endemic, attack rates appear higher in the nonimmune population (ie, travelers, expatriates, and immunocompromised individuals). Cyclosporiasis was a Cyclosporiasis is a food- and water-borne infection leading cause of persistent diarrhea among travelers to that affects healthy and immunocompromised indi- Nepal in spring and summer and continues to be reported viduals. Awareness of the disease has increased, and among travelers in Latin America and Southeast Asia outbreaks continue to be reported among vulnera- [8–10]. Almost half (14/29) the investigated Dutch attend- ble hosts and now among local residents in endemic ees of a scientifi c meeting of microbiologists held in 2001 areas. Advances in molecular techniques have in Indonesia had C. cayetanensis in stool, confi rmed by improved identifi cation of infection, but detecting microscopy and/or polymerase chain reaction (PCR), and food and water contamination remains diffi cult. -
Cyclospora Cayetanensis and Cyclosporiasis: an Update
microorganisms Review Cyclospora cayetanensis and Cyclosporiasis: An Update Sonia Almeria 1 , Hediye N. Cinar 1 and Jitender P. Dubey 2,* 1 Department of Health and Human Services, Food and Drug Administration, Center for Food Safety and Nutrition (CFSAN), Office of Applied Research and Safety Assessment (OARSA), Division of Virulence Assessment, Laurel, MD 20708, USA 2 Animal Parasitic Disease Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville Agricultural Research Center, Building 1001, BARC-East, Beltsville, MD 20705-2350, USA * Correspondence: [email protected] Received: 19 July 2019; Accepted: 2 September 2019; Published: 4 September 2019 Abstract: Cyclospora cayetanensis is a coccidian parasite of humans, with a direct fecal–oral transmission cycle. It is globally distributed and an important cause of foodborne outbreaks of enteric disease in many developed countries, mostly associated with the consumption of contaminated fresh produce. Because oocysts are excreted unsporulated and need to sporulate in the environment, direct person-to-person transmission is unlikely. Infection by C. cayetanensis is remarkably seasonal worldwide, although it varies by geographical regions. Most susceptible populations are children, foreigners, and immunocompromised patients in endemic countries, while in industrialized countries, C. cayetanensis affects people of any age. The risk of infection in developed countries is associated with travel to endemic areas and the domestic consumption of contaminated food, mainly fresh produce imported from endemic regions. Water and soil contaminated with fecal matter may act as a vehicle of transmission for C. cayetanensis infection. The disease is self-limiting in most immunocompetent patients, but it may present as a severe, protracted or chronic diarrhea in some cases, and may colonize extra-intestinal organs in immunocompromised patients. -
Cyclosporiasis and Fresh Produce
FDA FACT SHEET Produce Safety Rule (21 CFR 112) Cyclosporiasis and Fresh Produce Fast Facts for Farmers: • Cyclosporiasis is an intestinal illness caused by the parasite Cyclospora cayetanensis (C. cayetanensis), which only occurs in humans, and the most common symptom is diarrhea. • Infected people shed the parasite in their feces. • When the parasite is found in water or food, it means that the water or food has been contaminated with human feces. • Other people may become sick by ingesting water or food contaminated with the parasite. • Good hygiene (including proper handwashing) is a critical component of ensuring the safety of fresh produce, but by itself it may not be enough to prevent infected employees from contaminating fresh produce. • The FSMA Produce Safety Rule requires that personnel on farms use hygienic practices (§ 112.32) and that ill employees are excluded from handling fresh produce and food contact surfaces (§ 112.31). What is Cyclospora cayetanensis? C. cayetanensis is a human parasite, which means it must live inside a human host to survive and multiply. The parasite can cause an infection, called cyclosporiasis. A person may become infected after ingesting food or water contaminated with the parasite. Infected people, even if showing no symptoms of infection, may shed the parasite in their feces, which can contaminate food and water, leading to the infection of other people. Cyclosporiasis outbreaks have been associated with the consumption of fresh fruits and vegetables around the world, including in the U.S. What are the symptoms of cyclosporiasis? Most people infected with C. cayetanensis develop diarrhea, with frequent, sometimes explosive, bowel movements. -
Multifunctional Polyketide Synthase Genes Identified by Genomic Survey of the Symbiotic Dinoflagellate, Symbiodinium Minutum
Beedessee et al. BMC Genomics (2015) 16:941 DOI 10.1186/s12864-015-2195-8 RESEARCH ARTICLE Open Access Multifunctional polyketide synthase genes identified by genomic survey of the symbiotic dinoflagellate, Symbiodinium minutum Girish Beedessee1*, Kanako Hisata1, Michael C. Roy2, Noriyuki Satoh1 and Eiichi Shoguchi1* Abstract Background: Dinoflagellates are unicellular marine and freshwater eukaryotes. They possess large nuclear genomes (1.5–245 gigabases) and produce structurally unique and biologically active polyketide secondary metabolites. Although polyketide biosynthesis is well studied in terrestrial and freshwater organisms, only recently have dinoflagellate polyketides been investigated. Transcriptomic analyses have characterized dinoflagellate polyketide synthase genes having single domains. The Genus Symbiodinium, with a comparatively small genome, is a group of major coral symbionts, and the S. minutum nuclear genome has been decoded. Results: The present survey investigated the assembled S. minutum genome and identified 25 candidate polyketide synthase (PKS) genes that encode proteins with mono- and multifunctional domains. Predicted proteins retain functionally important amino acids in the catalytic ketosynthase (KS) domain. Molecular phylogenetic analyses of KS domains form a clade in which S. minutum domains cluster within the protist Type I PKS clade with those of other dinoflagellates and other eukaryotes. Single-domain PKS genes are likely expanded in dinoflagellate lineage. Two PKS genes of bacterial origin are found in the S. minutum genome. Interestingly, the largest enzyme is likely expressed as a hybrid non-ribosomal peptide synthetase-polyketide synthase (NRPS-PKS) assembly of 10,601 amino acids, containing NRPS and PKS modules and a thioesterase (TE) domain. We also found intron-rich genes with the minimal set of catalytic domains needed to produce polyketides. -
Identification of Cyclospora and Isospora from Diarrheic Patients in the Philippines
Philippine Journal of Science RESEARCH NOTE 137 (1): 11-15, June 2008 ISSN 0031 - 7683 Identification of Cyclospora and Isospora from Diarrheic Patients in the Philippines Corazon C. Buerano1,2, Catherine B. Lago1, Ronald R. Matias1, Blanquita B. de Guzman1, Shinji Izumiyama3, Kenji Yagita3, and Filipinas F. Natividad1* 1Research and Biotechnology Division, St. Luke’s Medical Center 279 E. Rodriguez Sr. Ave., Quezon City 1102, Philippines 2Institute of Biology, University of the Philippines Diliman, Quezon City 1101, Philippines 3Department of Parasitology, National Institute of Infectious Diseases Toyama 1-23-1, Shinjuku-ku, Tokyo 162-8640, Japan In recent years, Cyclospora cayetanensis and Isospora belli have been recognized as causative organisms in cases of chronic diarrhea. The aim of this study was undertaken to determine the prevalence of enteric protozoa among diarrhea patients in the Philippines. Stools were collected and from 3456 samples examined, only one sample each was found positive for oocysts of Cyclospora cayetanensis and Isospora belli. Identification was based on autofluorescence of the oocysts with a 365 nm ultraviolet excitation filter. Both samples were obtained from male patients (18 and 73 years old, respectively) living in Iloilo province in the western islands of Visayas, Philippines. Both patients obtained their drinking water from deep wells. The identification of these two emerging pathogens, which are easily overlooked by less-trained technical staff, highlights the increasing awareness and technical capability on detecting these parasites in the Philippines. Key Words: Cyclospora, Isospora, enteric protozoa, diarrhea INTRODUCTION in tropical areas of south America and southeast Asia (Wittner et al. 1993), and has also been associated with Both Cyclospora and Isospora belongs to family diarrhea outbreaks in mental wards and day care centers Eimeridae, subphylum apicomplexa, which are (Marshall et al. -
Cyclosporiasis in an Infant
144Indian Journal of Medical Microbiology, (2006) 24 (2):144-5 Case Report CYCLOSPORIASIS IN AN INFANT RN Iyer Abstract This report describes cyclosporiasis in a seven month old infant who presented with incessant crying and refusal of feeds. The routine modified ZN stained smears showed the oocysts of Cyclospora when all other tests failed to reveal enteric pathogens. The need for the clinical laboratory to screen faeces samples for all possible pathogens in a given clinical situation needs to be emphasized. Key words: Cyclospora, infant, faeces. Acute diarrhoeal illness represents a significant health subcultured on MacConkey’s agar after six hours of incubation problem in children, particularly in infants where infective at 37oC. Rotavirus antigen was tested using a sandwich ELISA diarrhoeal disease can lead to suboptimal development. Whilst technique. Parasitology studies were carried out on both the Cyclospora has been described in the literature as a cause of samples employing saline and Lugol’s iodine mounts, formalin childhood diarrhea.1,2 there are no reports of an infant suffering ether concentration technique with wet mounts for from cyclosporiasis. The following case report is an attempt examination and smears from the deposit for modified Ziehl in this direction. Neelsen. Four smears were also made directly from both the faecal samples for a modified ZN stain(cold carbol fuchsin and Case Report with 3% acid alcohol) for the oocysts of coccidian parasites. A Sheather’s sucrose floatation technique3 was carried out on A seven-month-old male infant, was brought to the out both the samples to detect oocysts of Cryptosporidium patient department with a history of low grade fever with species. -
Subcellular Localization of Dinoflagellate Polyketide Synthases and Fatty Acid Synthase Activity1
J. Phycol. 49, 1118–1127 (2013) © Published 2013. This article is a U.S. Government work and is in the public domain in the U.S.A. DOI: 10.1111/jpy.12120 SUBCELLULAR LOCALIZATION OF DINOFLAGELLATE POLYKETIDE SYNTHASES AND FATTY ACID SYNTHASE ACTIVITY1 Frances M. Van Dolah,2 Mackenzie L. Zippay Marine Biotoxins Program, NOAA Center for Coastal Environmental Health and Biomolecular Research, Charleston, South Carolina 29412, USA Marine Biomedical and Environmental Sciences, Medical University of South Carolina, Charleston, South Carolina 29412, USA Laura Pezzolesi Interdepartmental Research Centre for Environmental Science (CIRSA), University of Bologna, Ravenna 48123, Italy Kathleen S. Rein Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, USA Jillian G. Johnson Marine Biotoxins Program, NOAA Center for Coastal Environmental Health and Biomolecular Research, Charleston, South Carolina 29412, USA Marine Biomedical and Environmental Sciences, Medical University of South Carolina, Charleston, South Carolina 29412, USA Jeanine S. Morey, Zhihong Wang Marine Biotoxins Program, NOAA Center for Coastal Environmental Health and Biomolecular Research, Charleston, South Carolina 29412, USA and Rossella Pistocchi Interdepartmental Research Centre for Environmental Science (CIRSA), University of Bologna, Ravenna 48123, Italy Dinoflagellates are prolific producers of polyketide related to fatty acid synthases (FAS), we sought to secondary metabolites. Dinoflagellate polyketide determine if fatty acid biosynthesis colocalizes with synthases (PKSs) have sequence similarity to Type I either chloroplast or cytosolic PKSs. [3H]acetate PKSs, megasynthases that encode all catalytic domains labeling showed fatty acids are synthesized in the on a single polypeptide. However, in dinoflagellate cytosol, with little incorporation in chloroplasts, PKSs identified to date, each catalytic domain resides consistent with a Type I FAS system.