Download Download
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Modeling and Partitioning the Nucleotide Evolutionary Process for Phylogenetic and Comparative Genomic Inference
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2007 Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference Todd Castoe University of Central Florida Part of the Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Doctoral Dissertation (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Castoe, Todd, "Modeling And Partitioning The Nucleotide Evolutionary Process For Phylogenetic And Comparative Genomic Inference" (2007). Electronic Theses and Dissertations, 2004-2019. 3111. https://stars.library.ucf.edu/etd/3111 MODELING AND PARTITIONING THE NUCLEOTIDE EVOLUTIONARY PROCESS FOR PHYLOGENETIC AND COMPARATIVE GENOMIC INFERENCE by TODD A. CASTOE B.S. SUNY – College of Environmental Science and Forestry, 1999 M.S. The University of Texas at Arlington, 2001 A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomolecular Sciences in the Burnett College of Biomedical Sciences at the University of Central Florida Orlando, Florida Spring Term 2007 Major Professor: Christopher L. Parkinson © 2007 Todd A. Castoe ii ABSTRACT The transformation of genomic data into functionally relevant information about the composition of biological systems hinges critically on the field of computational genome biology, at the core of which lies comparative genomics. The aim of comparative genomics is to extract meaningful functional information from the differences and similarities observed across genomes of different organisms. -
Unesp INSTITUTO DE BIOCIÊNCIAS – RIO CLARO
UNIVERSIDADE ESTADUAL PAULISTA “JÚLIO DE MESQUITA FILHO” unesp INSTITUTO DE BIOCIÊNCIAS – RIO CLARO PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS (ZOOLOGIA) LEVANTAMENTO DA HERPETOFAUNA DO PARQUE NATURAL MUNICIPAL NASCENTES DE PARANAPIACABA, SANTO ANDRÉ, SP Vivian Carlos Trevine Dissertação apresentada ao Instituto de Biociências do Campus de Rio Claro, Universidade Estadual Paulista Júlio de Mesquita Filho, como parte dos requisitos para obtenção do título de Mestre em Ciências Biológicas (Zoologia). Setembro - 2011 Vivian Carlos Trevine Levantamento da Herpetofauna do Parque Natural Municipal Nascentes de Paranapiacaba, Santo André, SP Dissertação apresentada ao Instituto de Biociências do Campus de Rio Claro, Universidade Estadual Paulista Júlio de Mesquita Filho, como parte dos requisitos para obtenção do título de Mestre em Ciências Biológicas (Zoologia). Orientador: Prof. Dr. Hussam El Dine Zaher Rio Claro 2011 Vivian Carlos Trevine Levantamento da Herpetofauna do Parque Natural Municipal Nascentes de Paranapiacaba, Santo André, SP Dissertação apresentada ao Instituto de Biociências do Campus de Rio Claro,Universidade Estadual Paulista Júlio de Mesquita Filho, como parte dos requisitos para obtenção do título de Mestre em Ciências Biológicas (Zoologia). Comissão Examinadora ____________________________________ _____________________________________ _____________________________________ Rio Claro, 30 de agosto de 2011. Se um dia eu enxerguei mais longe, foi por estar de pé sobre ombros de gigantes. Isaac Newton AGRADECIMENTOS A Hussam Zaher pela oportunidade de trabalhar no MZUSP, pela orientação, paciência e por todo o apoio no desenvolvimento do mestrado. A Célio F. B. Haddad por possibilitar o financiamento das viagens de campo (proc. Fapesp 2008/50928-1), imprescindível para a realização deste trabalho, e também pela hospitalidade em Rio Claro e acesso à coleção CFBH. -
Sobre a BIOTA NEOTROPICA
Biota Neotrop. vol. 9, no. 1, jan./mar. 2009 ISSN 1678-6424 ISSN 1678-6424 vol. 9, no. 1, jan./mar. 2009 jan./mar. 1, no. 9, vol. Sumário Artigos Uma revisão da distribuição de Ocotea curucutuensis J.B. Baitello na região sudeste do Brasil vol. 9, no. 1, jan./mar. 2009 Frederico Alexandre Roccia Dal Pozzo Arzolla, João Batista Baitello, George John Shepherd, Gláucia Cortez Ramos de Paula & Ricardo Bertoncello ...............................................21 Novos registros, sinonímia e descrição do macho de Culicoides horticola Lutz (Diptera: Ceratopogonidae) Maria Luiza Felippe-Bauer & Gustavo Ricardo Spinelli .....................................................................................................................................................................................................27 Os pequenos mamíferos da altamente impactada Floresta Atlântica do Nordeste do Brasil, Centro de Endemismo Pernambuco Paulo Henrique Asfora & Antonio Rossano Mendes Pontes ..............................................................................................................................................................................................31 Ácaros associados ao cafeeiro (Coffea spp.) no estado de São Paulo, Brasil. Parte I. Mesostigmata Jeferson Luiz de Carvalho Mineiro, Adalton Raga, Mario Eidi Sato & Antonio Carlos Lofego ...........................................................................................................................................37 Relações entre diversidade íctia e fatores hidrodinâmicos -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
<I>Alopoglossus Atriventris
HERPETOLOGICAL JOURNAL 17: 269–272, 2007 digenean Mesocoelium monas in Prionodactylus Short Note eigenmanni, also from Brazil. The purpose of this paper is to present an initial helminth list for Alopoglossus angulatus and A. atriventris. Parasite communities of two Nineteen Alopoglossus angulatus (mean snout–vent length [SVL] = 42.1±13.4 mm, range 24–60 mm) and 16 A. lizard species, Alopoglossus atriventris (SVL = 36.9±9.2 mm, range 21–48 mm) were angulatus and Alopoglossus borrowed from the herpetology collection of the Sam No- ble Oklahoma Museum of Natural History (OMNH) and atriventris, from Brazil and examined for helminths. Stomachs from these lizards had previously been removed and were not available for this Ecuador study. Collection localities are as follows. Alopoglossus angulatus: 14 (OMNH 36931–36944) from Acre state, Bra- Stephen R. Goldberg1, Charles R. zil 1996; one (OMNH 37125) from Amazonas state, Brazil Bursey2 & Laurie J. Vitt3 1997; one (OMNH 37337) from Rondônia state, Brazil 1998; three (OMNH 36440–36442) from Sucumbíos prov- 1Department of Biology, Whittier College, California, USA ince, Ecuador 1994. Alopoglossus atriventris: eight 2Department of Biology, Pennsylvania State University, USA (OMNH 36945–36952) from Acre state, Brazil 1996; four 3Sam Noble Oklahoma Museum of Natural History and (OMNH 37126–37129) from Amazonas state, Brazil 1997; Zoology Department, University of Oklahoma, USA two (OMNH 37637–37638) from Amazonas state, Brazil 1998; two (OMNH 36438–36439) from Sucumbíos prov- Alopoglossus angulatus and A. atriventris from Brazil ince, Ecuador 1994. These lizards had originally been fixed and Ecuador were examined for endoparasites. in 10% formalin and stored in 70% ethanol. -
Discovery of an Additional Piece of the Large Gymnophthalmid Puzzle: A
Zootaxa 4950 (2): 296–320 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2021 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4950.2.4 http://zoobank.org/urn:lsid:zoobank.org:pub:9464FC1F-2F92-46B7-BA53-1CFC93981F09 Discovery of an additional piece of the large gymnophthalmid puzzle: a new genus and species of stream spiny lizard (Squamata: Gymnophthalmidae: Cercosaurinae) from the western Guiana Shield in Venezuela FERNANDO J.M. ROJAS-RUNJAIC1*, CÉSAR L. BARRIO-AMORÓS2, J. CELSA SEÑARIS3,4, IGNACIO DE LA RIVA5 & SANTIAGO CASTROVIEJO-FISHER4,6 1Museo de Historia Natural La Salle, Fundación La Salle de Ciencias Naturales, Caracas 1050, Distrito Capital, Venezuela 2Doc Frog Expeditions/CRWild, 60504, Bahía Ballena, Uvita, Costa Rica �[email protected]; https://orcid.org/0000-0001-5837-9381 3PROVITA, calle La Joya con Av. Libertador, Unidad Técnica del Este, piso 10, oficina 29-30, Caracas 1060, Miranda, Venezuela �[email protected]; https://orcid.org/0000-0001-8673-7385 4Laboratório de Sistemática de Vertebrados, Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Av. Ipiranga 6681, Porto Alegre, RS 90619-900, Brazil 5Museo Nacional de Ciencias Naturales-CSIC, C/ José Gutiérrez Abascal 2, 28006 Madrid, Spain �[email protected]; https://orcid.org/0000-0001-5064-4507 6Department of Herpetology, American Museum of Natural History, 200 Central Park West, New York, NY 10024-5102, USA �[email protected]; https://orcid.org/0000-0002-1048-2168 *Corresponding author. �[email protected]; https://orcid.org/0000-0001-5409-4231 Abstract Gymnophthalmids are a highly diverse group of Neotropical lizards and its species richness is still in process of discovery. -
Diet of the Lizard Ecpleopus Gaudichaudii (Gymnophthalmidae) in Atlantic Rainforest, State of Rio De Janeiro, Brazil
ZOOLOGIA 28 (5): 587–592, October, 2011 doi: 10.1590/S1984-46702011000500006 Diet of the lizard Ecpleopus gaudichaudii (Gymnophthalmidae) in Atlantic Rainforest, state of Rio de Janeiro, Brazil Thiago Maia1, 5; Mauricio Almeida-Gomes1; Carla C. Siqueira2; Davor Vrcibradic3; Mara C. Kiefer4 & Carlos Frederico D. Rocha1 1 Departamento de Ecologia, Universidade do Estado do Rio de Janeiro. Rua São Francisco Xavier 524, 20550-019 Rio de Janeiro, RJ, Brazil. 2 Programa de Pós-Graduação em Ecologia, Instituto de Biologia, Universidade Federal do Rio de Janeiro. Avenida Carlos Chagas Filho 373, Bloco A, Cidade Universitária, 21941-902 Rio de Janeiro, RJ, Brazil. 3 Departamento de Zoologia, Universidade Federal do Estado do Rio de Janeiro. Avenida Pasteur 458, Urca, 22240-290 Rio de Janeiro, RJ, Brazil. 4 Departamento de Biologia Geral, Instituto de Biologia, Universidade Federal Fluminense. Caixa Postal 100436, Centro, 24020-971 Niterói, RJ, Brazil. 5 Corresponding author. E-mail: [email protected] ABSTRACT. In this study we analyzed the diet of the gymnophthalmid lizard Ecpleopus gaudichaudii Duméril & Bibron, 1839, a typical inhabitant of the forest-floor leaf litter, in an Atlantic Forest area in the state of Rio de Janeiro, southeast- ern Brazil. The 26 individuals sampled during the study had a mean snout-vent length (SVL) of 36.2 ± 4.2 mm and a mean jaw width (JW) of 4.1 ± 0.5 mm. We did not find differences in SVL between males and females, though the sexes differed in JW when the effect of body size was factored out, with females presenting higher values. The diet of the lizards was composed exclusively of arthropods, especially isopods and orthopterans. -
Molecular Phylogenetics, Species Diversity, and Biogeography of the Andean Lizards of the Genus Proctoporus (Squamata: Gymnophthalmidae)
Molecular Phylogenetics and Evolution 65 (2012) 953–964 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Molecular phylogenetics, species diversity, and biogeography of the Andean lizards of the genus Proctoporus (Squamata: Gymnophthalmidae) Noemí Goicoechea a, José M. Padial b, Juan C. Chaparro c, Santiago Castroviejo-Fisher b, ⇑ Ignacio De la Riva a,d, a Department of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales-CSIC, C/José Gutiérrez Abascal 2, 28006 Madrid, Spain b Department of Herpetology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024-5192, United States c Museo de Historia Natural, Universidad Nacional de San Antonio Abad del Cusco, Cusco, Peru d School of Marine and Tropical Biology, James Cook University, Townsville, Queensland 4811, Australia article info abstract Article history: The family Gymnophthalmidae comprises ca. 220 described species of Neotropical lizards distributed Received 25 February 2012 from southern Mexico to Argentina. It includes 36 genera, among them Proctoporus, which contains six Revised 20 August 2012 currently recognized species occurring across the yungas forests and wet montane grasslands of the Ama- Accepted 21 August 2012 zonian versant of the Andes from central Peru to central Bolivia. Here, we investigate the phylogenetic Available online 7 September 2012 relationships and species limits of Proctoporus and closely related taxa by analyzing 2121 base pairs of mitochondrial (12S, 16S, and ND4) and nuclear (c-mos) genes. Our taxon sampling of 92 terminals Keywords: includes all currently recognized species of Proctoporus and 15 additional species representing the most Andes closely related groups to the genus. -
Digit Evolution in Gymnophthalmid Lizards JULIANA G
Int. J. Dev. Biol. 58: 895-908 (2014) doi: 10.1387/ijdb.140255jg www.intjdevbiol.com Digit evolution in gymnophthalmid lizards JULIANA G. ROSCITO*,1, PEDRO M.S. NUNES2 and MIGUEL T. RODRIGUES1 1Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo-SP and 2Departamento de Zoologia, Centro de Ciências Biológicas, Universidade Federal de Pernambuco, Brazil ABSTRACT The tetrapod limb is a highly diverse structure, and reduction or loss of this structure accounts for many of the limb phenotypes observed within species. Squamate reptiles are one of the many tetrapod lineages in which the limbs have been greatly modified from the pentadactyl generalized pattern, including different degrees of reduction in the number of limb elements to complete limblessness. Even though limb reduction is widespread, the evolutionary and develop- mental mechanisms involved in the formation of reduced limb morphologies remains unclear. In this study, we present an overview of limb morphology within the microteiid lizard group Gymn- ophthalmidae, focusing on digit arrangement. We show that there are two major groups of limb- reduced gymnophthalmids. The first group is formed by lizard-like (and frequently pentadactyl) species, in which minor reductions (such as the loss of 1-2 phalanges mainly in digits I and V) are the rule; these morphologies generally correspond to those seen in other squamates. The second group is formed by species showing more drastic losses, which can include the absence of an ex- ternally distinct limb in adults. We also present the expression patterns of Sonic Hedgehog (Shh) in the greatly reduced fore and hindlimb of a serpentiform gymnophthalmid. -
Répteis Do Estado De São Paulo: Conhecimento Atual E Perspectivas
Biota Neotrop., vol. 11(Supl.1) Répteis do Estado de São Paulo: conhecimento atual e perspectivas Hussam Zaher1,6, Fausto Erritto Barbo1,2, Paola Sanchez Martínez1, Cristiano Nogueira3, Miguel Trefaut Rodrigues4 & Ricardo Jannini Sawaya5 1Museu de Zoologia, Universidade de São Paulo – USP, Av. Nazaré, n. 481, Ipiranga, CEP 04263-000, São Paulo, SP, Brasil 2Programa de Pós-graduação em Biologia Animal, Instituto de Biociências, Letras e Ciências Exatas, Universidade Estadual Paulista – UNESP, Rua Cristóvão Colombo, CP 2265, CEP 15054-000, São José do Rio Preto, SP, Brasil 3Departamento de Zoologia, Universidade de Brasília – UnB, CEP 70910-900, Brasília, DF, Brasil 4Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo – USP, Rua do Matão Travessa 14, Cidade Universitária, CEP 05508-900, São Paulo, SP, Brasil 5Departamento de Ciências Biológicas, Universidade Federal de São Paulo – UNIFESP, Rua Prof. Artur Riedel, n. 275, Eldorado, CEP 09972-270, Diadema, SP, Brasil 6Autor para correspondência: Hussam Zaher, e-mail: [email protected] ZAHER, H., BARBO, F.E., MARTÍNEZ, P.S., NOGUEIRA, C., RODRIGUES, M.T. & SAWAYA R.J. Reptiles from São Paulo State: current knowledge and perspectives. Biota Neotrop. 11(1a): http://www.biotaneotropica. org.br/v11n1a/en/abstract?inventory+bn0051101a2011. Abstract: The present study provides a list of species of reptiles known to occur in the State of São Paulo, based on specimens with confirmed localities, housed in the three largest scientific collections of the state, and published information. We registered the presence of 212 species of reptiles within the boundaries of the state that belong to 23 families and include 12 chelonians, three crocodilians, and 197 squamates (142 snakes, 44 “lizards,” and 11 amphisbenians). -
Herpetological Journal FULL PAPER
Volume 28 (January 2018), 1-9 FULL PAPER Herpetological Journal Published by the British Morphological and mitochondrial variation of spur-thighedHerpetological Society tortoises, Testudo graeca, in Turkey Oguz Turkozan1, Ferhat Kiremit2, Brian R. Lavin3, Fevzi Bardakcı1 & James F. Parham4 1Adnan Menderes University, Faculty of Science and Arts, Department of Biology, 09010 Aydın, Turkey 2Adnan Menderes University, Faculty of Agriculture, Department of Agricultural Biotechnology, Koçarlı, Aydın, Turkey 3Department of Biology, Sonoma State University, 1801 East Cotati Avenue, Rohnert Park CA 94928, USA 4John D. Cooper Archaeology & Paleontology Center, Department of Geological Sciences, California State University, Fullerton, CA 92834, USA Testudo graeca has a wide distribution under different geographic, climatic and ecological conditions, and shows high morphological differences especially in the Asian (Middle Eastern and Caucasian) parts of the range. This study investigates morphometric and genetic differentiation in the T. graeca complex in Turkey using the densest sampling to date. We sequenced two mt-DNA loci (ND4 and cyt b) of 199 samples and combined them with previously published data. Bayesian analysis yielded six well-supported clades, four of which occur in Turkey (ibera, terrestris, armeniaca and buxtoni). The armeniaca mtDNA clade locally represents a morphometrically distinct burrowing ecomorph. However, previous studies have shown that individuals outside Turkey possessing armeniaca mtDNA lack the distinctive armeniaca morphotype we observed, precluding taxonomic conclusions. Key words: mtDNA, morphometry, Testudinidae, Testudo, Turkey INTRODUCTION the Mediterranean coast of Turkey are morphometrically homogenous, but that some inland Turkish populations pur-thighed tortoises (Testudo graeca Linnaeus are morphometrically distinct, reflecting some of the S1758) occur on three continents (Europe, Africa, genetic clade assignments of Parham et al. -
Resumo Placosoma Cipoense Cor Hugo
Contribuição do Plano de Ação Nacional para Conservação de Répteis e Anfíbios ameaçados de extinção na Serra do Espinhaço: Ampliação de distribuição e primeiro registro fora da localidade tipo de Placosoma cipoense (Gymnophthalmidae), um lagarto ameaçado de extinção. Marcus Thadeu Teixeira Santos Felipe Sá Fortes Leite Leandro de Oliveira Drummond Hugo Bonfim de Arruda Pinto O gênero Placosoma Fitzinger, 1847 é constituído de três espécies de lagartos encontrados somente no Brasil: Placosoma cordylinum Fitzinger, 1847, Placosoma glabellum Peters, 1870 e Placosoma cipoense Cunha, 1966. P. cipoense foi descrita com base em somente um único exemplar coletado na Serra do Cipó. A espécie foi considerada como rara e com área de ocorrência relativamente restrita desde o momento de sua descrição. Até recentemente os registros da espécie eram pouco numerosos e esporádicos, sendo que somente quatro indivíduos haviam sido coletados. Porém, em expedição científica decorrente das ações do “Plano de Ação Nacional para Conservação de Répteis e Anfíbios Ameaçados de Extinção na Serra do Espinhaço” (PAN Espinhaço), publicado na Portaria nº 22, de 17 de fevereiro de 2012 – ICMBio e coordenado pelo Centro Nacional de Pesquisa e Conservação de Répteis e Anfíbios - RAN), em 2011, dentro do Parque Nacional da Serra do Cipó, foram encontrados mais dois indivíduos de P. cipoense , após 10 anos sem registros da espécie. Pouco se sabe sobre a biologia dessa espécie, sendo que os poucos exemplares para os quais há informação foram obtidos sob troncos ou em frestas de pedras, em regiões de campos rupestres ou próximas a matas de galeria, em altitudes entre 900 e 1.300 m.