Evolutionary Relationships and Taxonomy of Microtea
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Caryophyllales 2018 Instituto De Biología, UNAM September 17-23
Caryophyllales 2018 Instituto de Biología, UNAM September 17-23 LOCAL ORGANIZERS Hilda Flores-Olvera, Salvador Arias and Helga Ochoterena, IBUNAM ORGANIZING COMMITTEE Walter G. Berendsohn and Sabine von Mering, BGBM, Berlin, Germany Patricia Hernández-Ledesma, INECOL-Unidad Pátzcuaro, México Gilberto Ocampo, Universidad Autónoma de Aguascalientes, México Ivonne Sánchez del Pino, CICY, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México SCIENTIFIC COMMITTEE Thomas Borsch, BGBM, Germany Fernando O. Zuloaga, Instituto de Botánica Darwinion, Argentina Victor Sánchez Cordero, IBUNAM, México Cornelia Klak, Bolus Herbarium, Department of Biological Sciences, University of Cape Town, South Africa Hossein Akhani, Department of Plant Sciences, School of Biology, College of Science, University of Tehran, Iran Alexander P. Sukhorukov, Moscow State University, Russia Michael J. Moore, Oberlin College, USA Compilation: Helga Ochoterena / Graphic Design: Julio C. Montero, Diana Martínez GENERAL PROGRAM . 4 MONDAY Monday’s Program . 7 Monday’s Abstracts . 9 TUESDAY Tuesday ‘s Program . 16 Tuesday’s Abstracts . 19 WEDNESDAY Wednesday’s Program . 32 Wednesday’s Abstracs . 35 POSTERS Posters’ Abstracts . 47 WORKSHOPS Workshop 1 . 61 Workshop 2 . 62 PARTICIPANTS . 63 GENERAL INFORMATION . 66 4 Caryophyllales 2018 Caryophyllales General program Monday 17 Tuesday 18 Wednesday 19 Thursday 20 Friday 21 Saturday 22 Sunday 23 Workshop 1 Workshop 2 9:00-10:00 Key note talks Walter G. Michael J. Moore, Berendsohn, Sabine Ya Yang, Diego F. Registration -
Analysis of Phylogenomic Datasets Reveals Conflict, Concordance, And
Smith et al. BMC Evolutionary Biology (2015) 15:150 DOI 10.1186/s12862-015-0423-0 METHODOLOGY ARTICLE Open Access Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants Stephen A Smith1*, Michael J Moore2, Joseph W Brown1 and Ya Yang1 Abstract Background: The use of transcriptomic and genomic datasets for phylogenetic reconstruction has become increasingly common as researchers attempt to resolve recalcitrant nodes with increasing amounts of data. The large size and complexity of these datasets introduce significant phylogenetic noise and conflict into subsequent analyses. The sources of conflict may include hybridization, incomplete lineage sorting, or horizontal gene transfer, and may vary across the phylogeny. For phylogenetic analysis, this noise and conflict has been accommodated in one of several ways: by binning gene regions into subsets to isolate consistent phylogenetic signal; by using gene-tree methods for reconstruction, where conflict is presumed to be explained by incomplete lineage sorting (ILS); or through concatenation, where noise is presumed to be the dominant source of conflict. The results provided herein emphasize that analysis of individual homologous gene regions can greatly improve our understanding of the underlying conflict within these datasets. Results: Here we examined two published transcriptomic datasets, the angiosperm group Caryophyllales and the aculeate Hymenoptera, for the presence of conflict, concordance, and gene duplications in individual homologs across the phylogeny. We found significant conflict throughout the phylogeny in both datasets and in particular along the backbone. While some nodes in each phylogeny showed patterns of conflict similar to what might be expected with ILS alone, the backbone nodes also exhibited low levels of phylogenetic signal. -
What Is Primitive in Mesembryanthemaceae? an Analysis of Evolutionary Polarity of Character States
S.Afr.J. Bot., 1989,55(3): 321-331 321 What is primitive in Mesembryanthemaceae? An analysis of evolutionary polarity of character states V. Bittrich* and M. Struck Institut fUr Allgemeine Botanik und Botanischer Garten der Universitat Hamburg, Ohnhorststr. 18, D-2000 Hamburg 52, West Germany Accepted 16 November 1988 Characters of the family Mesembryanthemaceae are investigated with respect to their state (primitive or derived) within this family. Out-group comparison with the closely related family Aizoaceae s.str. (excl. Mesembryanthemaceae) is used mainly, along with some other criteria. A tabulated survey of the characters discussed is provided. By combination of all characters considered as primitive, a morphotype (,hypothetical ancestor') of the Mesembryanthemaceae can be constructed. It is shown that no extant taxon possesses all features of this morphotype, but that all have acquired a number of derived characters. The possibility of the meronectary being a further synapomorphy of the family is discussed. A new synapomorphy for the subfamily Mesembryanthemoideae, namely the absence of expanding sheets on the valves of the hygrochastic capsule, is provided. The fundamental splitting of the Mesembryanthemaceae in two monophyletic subfamilies (Mesembryanthemoideae and Ruschioideae) is further supported by the results. Kenmerke van die familie Mesembryanthemaceae word, met betrekking tot hul toestand (primitief of afgelei) binne die familie, ondersoek. Buitegroep-vergelyking met die naverwante familie Aizoaceae s. str. (wat die Mesembryanthemaceae uitsluit) word hoofsaaklik, saam met ander kriteriums gebruik. 'n Getabuleerde oorsig van die kenmerke onder bespreking, word voorsien. Deur middel van 'n kombinasie van al die kenmerke wat as primitief beskou word, kan 'n morfotipe (hipotetiese voorouer) van die Mesembryanthemaceae gekonstrueer word. -
Atlas of Pollen and Plants Used by Bees
AtlasAtlas ofof pollenpollen andand plantsplants usedused byby beesbees Cláudia Inês da Silva Jefferson Nunes Radaeski Mariana Victorino Nicolosi Arena Soraia Girardi Bauermann (organizadores) Atlas of pollen and plants used by bees Cláudia Inês da Silva Jefferson Nunes Radaeski Mariana Victorino Nicolosi Arena Soraia Girardi Bauermann (orgs.) Atlas of pollen and plants used by bees 1st Edition Rio Claro-SP 2020 'DGRV,QWHUQDFLRQDLVGH&DWDORJD©¥RQD3XEOLFD©¥R &,3 /XPRV$VVHVVRULD(GLWRULDO %LEOLRWHF£ULD3ULVFLOD3HQD0DFKDGR&5% $$WODVRISROOHQDQGSODQWVXVHGE\EHHV>UHFXUVR HOHWU¶QLFR@RUJV&O£XGLD,Q¬VGD6LOYD>HW DO@——HG——5LR&ODUR&,6(22 'DGRVHOHWU¶QLFRV SGI ,QFOXLELEOLRJUDILD ,6%12 3DOLQRORJLD&DW£ORJRV$EHOKDV3µOHQ– 0RUIRORJLD(FRORJLD,6LOYD&O£XGLD,Q¬VGD,, 5DGDHVNL-HIIHUVRQ1XQHV,,,$UHQD0DULDQD9LFWRULQR 1LFRORVL,9%DXHUPDQQ6RUDLD*LUDUGL9&RQVXOWRULD ,QWHOLJHQWHHP6HUYL©RV(FRVVLVWHPLFRV &,6( 9,7¯WXOR &'' Las comunidades vegetales son componentes principales de los ecosistemas terrestres de las cuales dependen numerosos grupos de organismos para su supervi- vencia. Entre ellos, las abejas constituyen un eslabón esencial en la polinización de angiospermas que durante millones de años desarrollaron estrategias cada vez más específicas para atraerlas. De esta forma se establece una relación muy fuerte entre am- bos, planta-polinizador, y cuanto mayor es la especialización, tal como sucede en un gran número de especies de orquídeas y cactáceas entre otros grupos, ésta se torna más vulnerable ante cambios ambientales naturales o producidos por el hombre. De esta forma, el estudio de este tipo de interacciones resulta cada vez más importante en vista del incremento de áreas perturbadas o modificadas de manera antrópica en las cuales la fauna y flora queda expuesta a adaptarse a las nuevas condiciones o desaparecer. -
Flora and Annual Distribution of Flowers and Fruits in the Ubajara National Park, Ceará, Brazil
Floresta e Ambiente 2020; 27(2): e20190058 https://doi.org/10.1590/2179-8087.005819 ISSN 2179-8087 (online) ORIGINAL ARTICLE - Conservation of Nature Flora and Annual Distribution of Flowers and Fruits in the Ubajara National Park, Ceará, Brazil Andréa Pereira Silveira1 0000-0001-6785-5319 Bruno Sousa de Menezes2 0000-0003-1134-8996 Maria Iracema Bezerra Loiola2 0000-0003-3389-5560 Luiz Wilson Lima-Verde2 0000-0002-6908-1692 Dalva Neta e Zanina2 0000-0002-4653-445X Ellen Cristina Dantas de Carvalho2 0000-0002-6887-3970 Bruno Cruz de Souza2 0000-0002-4746-2638 Rafael Carvalho da Costa2 0000-0002-0942-3128 Waldir Mantovani2 0000-0002-9394-6860 Marcelo Oliveira Teles de Menezes3 0000-0003-2129-6843 Lilian Maria Araújo Flores2 0000-0001-8037-6021 Francisco Carlos Barboza Nogueira4 Ligia Queiroz Matias2 0000-0002-1889-5354 Lívia Silvia Barbosa5 Fernanda Melo Gomes2 0000-0002-4213-6577 Luciana Silva Cordeiro2 0000-0001-5624-2285 Valéria da Silva Sampaio2 0000-0002-6551-8877 Maria Edenilce Peixoto Batista2 0000-0002-1239-0902 Raimundo Luciano Soares Neto6 0000-0002-5643-9464 Maria Arlene Pessoa da Silva7 0000-0001-8148-5350 Natália Barbosa Campos7 Arycelle Alves de Oliveira7 Francisca Soares de Araujo2 0000-0003-4661-6137 Abstract Although the conservation of tropical biodiversity depends on protected areas, there is still a very large ‘gap’ of knowledge on the flora of Brazilian reserves, especially in the Northeast region of Brazil. Field and herbarium surveys of the phanerogamic flora of the Ubajara National Park, located on the Brazilian Northeast, were made and analyses on phenology and dispersal syndromes were performed. -
Molecular Phylogenetic Relationships Among Members of the Family Phytolaccaceae Sensu Lato Inferred from Internal Transcribed Sp
Molecular phylogenetic relationships among members of the family Phytolaccaceae sensu lato inferred from internal transcribed spacer sequences of nuclear ribosomal DNA J. Lee1, S.Y. Kim1, S.H. Park1 and M.A. Ali2 1International Biological Material Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon, South Korea 2Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia Corresponding author: M.A. Ali E-mail: [email protected] Genet. Mol. Res. 12 (4): 4515-4525 (2013) Received August 6, 2012 Accepted November 21, 2012 Published February 28, 2013 DOI http://dx.doi.org/10.4238/2013.February.28.15 ABSTRACT. The phylogeny of a phylogenetically poorly known family, Phytolaccaceae sensu lato (s.l.), was constructed for resolving conflicts concerning taxonomic delimitations. Cladistic analyses were made based on 44 sequences of the internal transcribed spacer of nuclear ribosomal DNA from 11 families (Aizoaceae, Basellaceae, Didiereaceae, Molluginaceae, Nyctaginaceae, Phytolaccaceae s.l., Polygonaceae, Portulacaceae, Sarcobataceae, Tamaricaceae, and Nepenthaceae) of the order Caryophyllales. The maximum parsimony tree from the analysis resolved a monophyletic group of the order Caryophyllales; however, the members, Agdestis, Anisomeria, Gallesia, Gisekia, Hilleria, Ledenbergia, Microtea, Monococcus, Petiveria, Phytolacca, Rivinia, Genetics and Molecular Research 12 (4): 4515-4525 (2013) ©FUNPEC-RP www.funpecrp.com.br J. Lee et al. 4516 Schindleria, Seguieria, Stegnosperma, and Trichostigma, which belong to the family Phytolaccaceae s.l., did not cluster under a single clade, demonstrating that Phytolaccaceae is polyphyletic. Key words: Phytolaccaceae; Phylogenetic relationships; Internal transcribed spacer; Nuclear ribosomal DNA INTRODUCTION The Caryophyllales (part of the core eudicots), sometimes also called Centrospermae, include about 6% of dicotyledonous species and comprise 33 families, 692 genera and approxi- mately 11200 species. -
Rethinking Phylogenetics Using Caryophyllales (Angiosperms), Matk Gene and Trnk Intron As Experimental Platform
Rethinking phylogenetics using Caryophyllales (angiosperms), matK gene and trnK intron as experimental platform Sunny Sheliese Crawley Dissertation submitted to the faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy In Biological Sciences Khidir W. Hilu Eric P. Beers Carla V. Finkielstein Jill C. Sible December 2, 2011 Blacksburg, Virginia Keywords: (phylogeny, missing data, caryophyllids, trnK intron, matK, RNA editing, gnetophytes) Copyright 2011, Sunny Sheliese Crawley Rethinking phylogenetics using Caryophyllales (angiosperms), matK gene and trnK intron as experimental platform Sunny Sheliese Crawley ABSTRACT The recent call to reconstruct a detailed picture of the tree of life for all organisms has forever changed the field of molecular phylogenetics. Sequencing technology has improved to the point that scientists can now routinely sequence complete plastid/mitochondrial genomes and thus, vast amounts of data can be used to reconstruct phylogenies. These data are accumulating in DNA sequence repositories, such as GenBank, where everyone can benefit from the vast growth of information. The trend of generating genomic-region rich datasets has far outpaced the expasion of datasets by sampling a broader array of taxa. We show here that expanding a dataset both by increasing genomic regions and species sampled using GenBank data, despite the inherent missing DNA that comes with GenBank data, can provide a robust phylogeny for the plant order Caryophyllales (angiosperms). We also investigate the utility of trnK intron in phylogeny reconstruction at relativley deep evolutionary history (the caryophyllid order) by comparing it with rapidly evolving matK. We show that trnK intron is comparable to matK in terms of the proportion of variable sites, parsimony informative sites, the distribution of those sites among rate classes, and phylogenetic informativness across the history of the order. -
Technical Report Series No. 287 Advisory List of Environmental Weeds in Victoria
Advisory list of environmental weeds in Victoria M. White, D. Cheal, G.W. Carr, R. Adair, K. Blood and D. Meagher April 2018 Arthur Rylah Institute for Environmental Research Technical Report Series No. 287 Arthur Rylah Institute for Environmental Research Department of Environment, Land, Water and Planning PO Box 137 Heidelberg, Victoria 3084 Phone (03) 9450 8600 Website: www.ari.vic.gov.au Citation: White, M., Cheal, D., Carr, G. W., Adair, R., Blood, K. and Meagher, D. (2018). Advisory list of environmental weeds in Victoria. Arthur Rylah Institute for Environmental Research Technical Report Series No. 287. Department of Environment, Land, Water and Planning, Heidelberg, Victoria. Front cover photo: Ixia species such as I. maculata (Yellow Ixia) have escaped from gardens and are spreading in natural areas. (Photo: Kate Blood) © The State of Victoria Department of Environment, Land, Water and Planning 2018 This work is licensed under a Creative Commons Attribution 3.0 Australia licence. You are free to re-use the work under that licence, on the condition that you credit the State of Victoria as author. The licence does not apply to any images, photographs or branding, including the Victorian Coat of Arms, the Victorian Government logo, the Department of Environment, Land, Water and Planning logo and the Arthur Rylah Institute logo. To view a copy of this licence, visit http://creativecommons.org/licenses/by/3.0/au/deed.en Printed by Melbourne Polytechnic, Preston Victoria ISSN 1835-3827 (print) ISSN 1835-3835 (pdf)) ISBN 978-1-76077-000-6 (print) ISBN 978-1-76077-001-3 (pdf/online) Disclaimer This publication may be of assistance to you but the State of Victoria and its employees do not guarantee that the publication is without flaw of any kind or is wholly appropriate for your particular purposes and therefore disclaims all liability for any error, loss or other consequence which may arise from you relying on any information in this publication. -
From Cacti to Carnivores: Improved Phylotranscriptomic Sampling And
Article Type: Special Issue Article RESEARCH ARTICLE INVITED SPECIAL ARTICLE For the Special Issue: Using and Navigating the Plant Tree of Life Short Title: Walker et al.—Phylotranscriptomic analysis of Caryophyllales From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales Joseph F. Walker1,13, Ya Yang2, Tao Feng3, Alfonso Timoneda3, Jessica Mikenas4,5, Vera Hutchison4, Caroline Edwards4, Ning Wang1, Sonia Ahluwalia1, Julia Olivieri4,6, Nathanael Walker-Hale7, Lucas C. Majure8, Raúl Puente8, Gudrun Kadereit9,10, Maximilian Lauterbach9,10, Urs Eggli11, Hilda Flores-Olvera12, Helga Ochoterena12, Samuel F. Brockington3, Michael J. Moore,4 and Stephen A. Smith1,13 Manuscript received 13 October 2017; revision accepted 4 January 2018. 1 Department of Ecology & Evolutionary Biology, University of Michigan, 830 North University Avenue, Ann Arbor, MI 48109-1048 USA 2 Department of Plant and Microbial Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St. Paul, MN 55108 USA 3 Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK 4 Department of Biology, Oberlin College, Science Center K111, 119 Woodland Street, Oberlin, OH 44074-1097 USA 5 Current address: USGS Canyonlands Research Station, Southwest Biological Science Center, 2290 S West Resource Blvd, Moab, UT 84532 USA 6 Institute of Computational and Mathematical Engineering (ICME), Stanford University, 475 Author Manuscript Via Ortega, Suite B060, Stanford, CA, 94305-4042 USA This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. -
Disparity, Diversity, and Duplications in the Caryophyllales
Research Disparity, diversity, and duplications in the Caryophyllales Stephen A. Smith1, Joseph W. Brown1, Ya Yang2, Riva Bruenn3, Chloe P. Drummond3, Samuel F. Brockington4, Joseph F. Walker1, Noah Last2, Norman A. Douglas3 and Michael J. Moore3 1Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48103, USA; 2Department of Plant Biology, University of Minnesota-Twin Cities, 1445 Gortner Avenue, St Paul, MN 55108, USA; 3Department of Biology, Oberlin College, 119 Woodland St, Oberlin, OH 44074-1097, USA; 4Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK Summary Author for correspondence: The role played by whole genome duplication (WGD) in plant evolution is actively debated. Stephen A. Smith WGDs have been associated with advantages such as superior colonization, various adapta- Tel: +1 734 615 5510 tions, and increased effective population size. However, the lack of a comprehensive mapping Email: [email protected] of WGDs within a major plant clade has led to uncertainty regarding the potential association Received: 30 May 2017 of WGDs and higher diversification rates. Accepted: 28 July 2017 Using seven chloroplast and nuclear ribosomal genes, we constructed a phylogeny of 5036 species of Caryophyllales, representing nearly half of the extant species. We phylogenetically New Phytologist (2017) mapped putative WGDs as identified from analyses on transcriptomic and genomic data and doi: 10.1111/nph.14772 analyzed these in conjunction with shifts in climatic occupancy and lineage diversification rate. Thirteen putative WGDs and 27 diversification shifts could be mapped onto the phylogeny. Key words: Caryophyllales, climatic occupancy, diversification rates, duplications, Of these, four WGDs were concurrent with diversification shifts, with other diversification phylogenomics. -
Cynomorium Coccineum ?
04_BalladaresyGarciadeLomas_2013_SGHN 08/01/2016 12:25 Page 1 Artículo ¿SON LAS PLANTAS INVASORAS UNA NUEVA AMENAZA PARA CYNOMORIUM COCCINEUM ? Luis Balladares, Juan García-de-Lomas* Grupo de Investigación Estructura y Dinámica de Ecosistemas Acuáticos. Pol. Río San Pedro s/n 11510 - Puerto Real (Cádiz, Spain) Recibido: 30 de agosto de 2013. Aceptado (versión revisada): 28 de septiembre de 2013. Publicado en línea: 25 de octubre de 2013 Palabras claves: Cynomorium coccineum , Galenia pubescens , amenazas, invasión, conservación, Cádiz. Keywords: Cynomorium coccineum , Galenia pubescens , threats, invasion, conservation, Cádiz. Resumen tats for S. vermiculata . This suggests that G. pubescens is a real and potential threat for C. coccineum by displacing its host plant and Cynomorium coccineun es una planta parásita de raíces de could reduce the extension of occurrence in the Cádiz province by 87%. quenopodiáceas, catalogada en Andalucía como “Vulnerable”, siendo We propose management measures to reduce the spread of Galenia la agricultura y el turismo sus amenazas. En la provincia de Cádiz se into the habitats suitable for S. vermiculata and C. coccineum , espe - distribuye en varios núcleos en el entorno de la Bahía de Cádiz, donde cially those located in the northernmost area of the Cádiz Bay Natu - recientemente se ha detectado una expansión de la planta invasora ral Park, between the cities of Cádiz and San Fernando. sudafricana Galenia pubescens . En este artículo se analizan las posi - bles repercusiones que la invasión de G. pubescens puede producir sobre la conservación de C. coccineum . Los resultados revelan un so - Introducción lapamiento de G. pubescens en los dos núcleos de C. -
Checklist of the Vascular Plants of San Diego County 5Th Edition
cHeckliSt of tHe vaScUlaR PlaNtS of SaN DieGo coUNty 5th edition Pinus torreyana subsp. torreyana Downingia concolor var. brevior Thermopsis californica var. semota Pogogyne abramsii Hulsea californica Cylindropuntia fosbergii Dudleya brevifolia Chorizanthe orcuttiana Astragalus deanei by Jon P. Rebman and Michael G. Simpson San Diego Natural History Museum and San Diego State University examples of checklist taxa: SPecieS SPecieS iNfRaSPecieS iNfRaSPecieS NaMe aUtHoR RaNk & NaMe aUtHoR Eriodictyon trichocalyx A. Heller var. lanatum (Brand) Jepson {SD 135251} [E. t. subsp. l. (Brand) Munz] Hairy yerba Santa SyNoNyM SyMBol foR NoN-NATIVE, NATURaliZeD PlaNt *Erodium cicutarium (L.) Aiton {SD 122398} red-Stem Filaree/StorkSbill HeRBaRiUM SPeciMeN coMMoN DocUMeNTATION NaMe SyMBol foR PlaNt Not liSteD iN THE JEPSON MANUAL †Rhus aromatica Aiton var. simplicifolia (Greene) Conquist {SD 118139} Single-leaF SkunkbruSH SyMBol foR StRict eNDeMic TO SaN DieGo coUNty §§Dudleya brevifolia (Moran) Moran {SD 130030} SHort-leaF dudleya [D. blochmaniae (Eastw.) Moran subsp. brevifolia Moran] 1B.1 S1.1 G2t1 ce SyMBol foR NeaR eNDeMic TO SaN DieGo coUNty §Nolina interrata Gentry {SD 79876} deHeSa nolina 1B.1 S2 G2 ce eNviRoNMeNTAL liStiNG SyMBol foR MiSiDeNtifieD PlaNt, Not occURRiNG iN coUNty (Note: this symbol used in appendix 1 only.) ?Cirsium brevistylum Cronq. indian tHiStle i checklist of the vascular plants of san Diego county 5th edition by Jon p. rebman and Michael g. simpson san Diego natural history Museum and san Diego state university publication of: san Diego natural history Museum san Diego, california ii Copyright © 2014 by Jon P. Rebman and Michael G. Simpson Fifth edition 2014. isBn 0-918969-08-5 Copyright © 2006 by Jon P.