Birch Diseases in Alaska Specifically Tested for Phytoplasma and Several Viruses Using PCR (Polymerase Chain Reaction) Technique

Total Page:16

File Type:pdf, Size:1020Kb

Birch Diseases in Alaska Specifically Tested for Phytoplasma and Several Viruses Using PCR (Polymerase Chain Reaction) Technique at Bonanza Creek and other sites. Leaves were Birch Diseases in Alaska specifically tested for phytoplasma and several viruses using PCR (polymerase chain reaction) technique. Nancy Robertson, Research Plant Pathologist, USDA Preliminary results were positive for ilarviruses (a Agricultural Research Service; Lori Winton, Pathologist, specific viral genus) and negative for phytoplasmas. Forest Health Protection Further molecular analysis (genetic sequencing) and characterization are ongoing for definitive viral Aerial survey and site visit reports in Southcentral taxonomic identification. Once identified, ecological and Interior Alaska have noted birch branch dieback, and epidemiological studies of the virus(es) would drought stress damage, and a general decline in tree help to ascertain their importance to the overall health condition since at least 2005. Like other tree declines, condition of birch trees and birch decline in Alaska. there is no obvious single cause for the gradual death of birch trees in Alaska, and it may be caused by a Historically, there has been limited research combination of drought and diseases or insects. In concerning viruses of forest trees, and documentation northeastern North America, birch decline has been usually involved viruses that were commonly found attributed to environmental changes. Recently, birch in horticultural trees and shrubs. Viruses of birch in decline has been observed in several birch forests in the USA include only the following three fruit tree Canada and the northern United States. While the viruses: Prune dwarf virus (PDV), Prunus necrotic symptoms of decline may be subtle initially, the most ringspot virus (PNRSV), and Apple mosaic virus obvious and damaging birch diseases in Alaska are (ApMV). Three additional viruses, Tobacco necrosis caused by fungi that produce highly visible conks or virus (TNV), Tobacco rattle virus (TRV), and Cherry mushrooms. The most common fungal pathogens leaf roll virus (CLRV), have been documented on of birch are: birch conk (Piptoporus betulina), birch trees from the United Kingdom. Interestingly, false tinder conk (Phellinus igniarius), cinder conk none of these viruses are transmitted by insects/mites (Inonotus obliquus), tinder conk (Fomes fomentarius), - the first group of viruses (PDV, PNRSV, ApMV) and yellow cap mushroom (Pholiota spp.). is strictly transmitted by pollen or seed, TNV by a fungus, and TRV and CLRV by specific nematodes. In 2012, unhealthy birch trees were observed in In Alaska, ApMV has been confirmed in susceptible Southcentral and Interior Alaska, with abnormalities apple tree cultivars and TRV has been detected in of varying types and severities. The most noticeable two ornamental perennials, peonies (Paeonia sp.) and and striking symptoms were numerous large brooms bleeding-heart (Dicentra sp.). Studies regarding the (concentrated, prolific branching) growing off the presence of the other four viruses in Alaska have not main stems of birch trees (Figures 30 and 31) in the been conducted. Work on the species identities and Bonanza Creek Experimental Forest and along the roles of viruses on birch in Alaska will continue, with Parks Highway in Denali State Park. The leaves on more results anticipated in the coming year. brooms were relatively small, and displayed virus-like symptoms that included line and oak-leaf patterns, ringspots, and mottling (Figure 32). In general, broom symptoms are attributed to infection by specific parasitic plants or viral, phytoplasmal, or fungal pathogens. Several fungal species in the genus Taphrina are known to cause broom symptoms on birch trees, but have not been officially confirmed in Alaska. Assays were implemented for detection and confirmation of viruses and phytoplasmas. Collections were made from trees with broom and/or leaf mottle/mosaic symptoms Figure 30. A birch broom at Porcupine Campground on the Kenai Peninsula. 32 U.S. Forest Service Alaska Region, State & Private Forestry DISEASES: ESSAY Figure 31. Birch brooms at Bonanza Creek Experimental Forest. Figure 32. Virus-like symptoms on birch leaves collected from a broom. Forest Health Conditions in Alaska - 2012 33.
Recommended publications
  • Relationships Between Wood-Inhabiting Fungal Species
    Silva Fennica 45(5) research articles SILVA FENNICA www.metla.fi/silvafennica · ISSN 0037-5330 The Finnish Society of Forest Science · The Finnish Forest Research Institute Relationships between Wood-Inhabiting Fungal Species Richness and Habitat Variables in Old-Growth Forest Stands in the Pallas-Yllästunturi National Park, Northern Boreal Finland Inari Ylläsjärvi, Håkan Berglund and Timo Kuuluvainen Ylläsjärvi, I., Berglund, H. & Kuuluvainen, T. 2011. Relationships between wood-inhabiting fungal species richness and habitat variables in old-growth forest stands in the Pallas-Yllästunturi National Park, northern boreal Finland. Silva Fennica 45(5): 995–1013. Indicators for biodiversity are needed for efficient prioritization of forests selected for conservation. We analyzed the relationships between 86 wood-inhabiting fungal (polypore) species richness and 35 habitat variables in 81 northern boreal old-growth forest stands in Finland. Species richness and the number of red-listed species were analyzed separately using generalized linear models. Most species were infrequent in the studied landscape and no species was encountered in all stands. The species richness increased with 1) the volume of coarse woody debris (CWD), 2) the mean DBH of CWD and 3) the basal area of living trees. The number of red-listed species increased along the same gradients, but the effect of basal area was not significant. Polypore species richness was significantly lower on western slopes than on flat topography. On average, species richness was higher on northern and eastern slopes than on western and southern slopes. The results suggest that a combination of habitat variables used as indicators may be useful in selecting forest stands to be set aside for polypore species conservation.
    [Show full text]
  • The Cardioprotective Properties of Agaricomycetes Mushrooms Growing in the Territory of Armenia (Review) Susanna Badalyan, Anush Barkhudaryan, Sylvie Rapior
    The Cardioprotective Properties of Agaricomycetes Mushrooms Growing in the Territory of Armenia (Review) Susanna Badalyan, Anush Barkhudaryan, Sylvie Rapior To cite this version: Susanna Badalyan, Anush Barkhudaryan, Sylvie Rapior. The Cardioprotective Properties of Agari- comycetes Mushrooms Growing in the Territory of Armenia (Review). International Journal of Medic- inal Mushrooms, Begell House, 2021, 23 (5), pp.21-31. 10.1615/IntJMedMushrooms.2021038280. hal-03202984 HAL Id: hal-03202984 https://hal.umontpellier.fr/hal-03202984 Submitted on 20 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. The Cardioprotective Properties of Agaricomycetes Mushrooms Growing in the territory of Armenia (Review) Susanna M. Badalyan 1, Anush Barkhudaryan 2, Sylvie Rapior 3 1Laboratory of Fungal Biology and Biotechnology, Institute of Pharmacy, Department of Biomedicine, Yerevan State University, Yerevan, Armenia; 2Department of Cardiology, Clinic of General and Invasive Cardiology, University Hospital № 1, Yerevan State Medical University, Yerevan, Armenia;
    [Show full text]
  • Toxic Fungi of Western North America
    Toxic Fungi of Western North America by Thomas J. Duffy, MD Published by MykoWeb (www.mykoweb.com) March, 2008 (Web) August, 2008 (PDF) 2 Toxic Fungi of Western North America Copyright © 2008 by Thomas J. Duffy & Michael G. Wood Toxic Fungi of Western North America 3 Contents Introductory Material ........................................................................................... 7 Dedication ............................................................................................................... 7 Preface .................................................................................................................... 7 Acknowledgements ................................................................................................. 7 An Introduction to Mushrooms & Mushroom Poisoning .............................. 9 Introduction and collection of specimens .............................................................. 9 General overview of mushroom poisonings ......................................................... 10 Ecology and general anatomy of fungi ................................................................ 11 Description and habitat of Amanita phalloides and Amanita ocreata .............. 14 History of Amanita ocreata and Amanita phalloides in the West ..................... 18 The classical history of Amanita phalloides and related species ....................... 20 Mushroom poisoning case registry ...................................................................... 21 “Look-Alike” mushrooms .....................................................................................
    [Show full text]
  • Polypore Fungi As a Flagship Group to Indicate Changes in Biodiversity – a Test Case from Estonia Kadri Runnel1* , Otto Miettinen2 and Asko Lõhmus1
    Runnel et al. IMA Fungus (2021) 12:2 https://doi.org/10.1186/s43008-020-00050-y IMA Fungus RESEARCH Open Access Polypore fungi as a flagship group to indicate changes in biodiversity – a test case from Estonia Kadri Runnel1* , Otto Miettinen2 and Asko Lõhmus1 Abstract Polyporous fungi, a morphologically delineated group of Agaricomycetes (Basidiomycota), are considered well studied in Europe and used as model group in ecological studies and for conservation. Such broad interest, including widespread sampling and DNA based taxonomic revisions, is rapidly transforming our basic understanding of polypore diversity and natural history. We integrated over 40,000 historical and modern records of polypores in Estonia (hemiboreal Europe), revealing 227 species, and including Polyporus submelanopus and P. ulleungus as novelties for Europe. Taxonomic and conservation problems were distinguished for 13 unresolved subgroups. The estimated species pool exceeds 260 species in Estonia, including at least 20 likely undescribed species (here documented as distinct DNA lineages related to accepted species in, e.g., Ceriporia, Coltricia, Physisporinus, Sidera and Sistotrema). Four broad ecological patterns are described: (1) polypore assemblage organization in natural forests follows major soil and tree-composition gradients; (2) landscape-scale polypore diversity homogenizes due to draining of peatland forests and reduction of nemoral broad-leaved trees (wooded meadows and parks buffer the latter); (3) species having parasitic or brown-rot life-strategies are more substrate- specific; and (4) assemblage differences among woody substrates reveal habitat management priorities. Our update reveals extensive overlap of polypore biota throughout North Europe. We estimate that in Estonia, the biota experienced ca. 3–5% species turnover during the twentieth century, but exotic species remain rare and have not attained key functions in natural ecosystems.
    [Show full text]
  • S41598-019-52711-7.Pdf
    www.nature.com/scientificreports OPEN The integration of metabolome and proteome reveals bioactive polyphenols and hispidin in ARTP mutagenized Phellinus baumii Henan Zhang1,5, Ruibing Chen2,5, Jingsong Zhang1, Qitao Bu2, Wenhan Wang1, Yanfang Liu1, Qing Li3, Ying Guo2, Lei Zhang2,4* & Yan Yang1* Phellinus baumii, also called “Sang Huang” in China, is broadly used as a kind of health food or folk medicine in Asia for its high biological activities, e.g. anti-tumor, anti-oxidation and anti-infammatory activities. Although some previous studies have indicated that polysaccharides and favonoids showed the activity of inhibiting tumor cells, the active metabolites of P. baumii needs further research. In our study, a stable P. baumii mutant (A67), generated by ARTP mutagenesis strategy, showed more signifcantly inhibiting tumor cells and enhancing antioxidant activity. Our further studies found that the increase of polyphenols content, especially hispidin, was an important reason of the biological activity enhancement of A67. According to the results of the integrated metabolome and proteome study, the increase of polyphenol content was caused by upregulation of the phenylpropanoid biosynthesis. This study expanded the understanding of active compounds and metabolic pathway of P. baumii. Phellinus baumii, a well-known fungus in Hymenochaetaceae family, grows on mulberry trees. It is a famous edi- ble mushroom in Asia and it is commonly called “Sang Huang” in China and “Meshimakobu” in Japan1. In China, P. baumii is even known as “biogold” for its health value and medicinal value2. Its fruiting body is traditionally used as a folk medicine for its high biological activities, e.g.
    [Show full text]
  • Stem Decays of Hardwoods in the Plains Numerous Decay Fungi, Numerous Hosts
    Stem Decays of Hardwoods in the Plains Numerous decay fungi, numerous hosts Pathogen—Many fungi decay wood in the roots, butts, and stems of hardwoods in the Great Plains of South Dakota, Nebraska, Kansas, and Colorado. Three stem-decay fungi are presented here: Phellinus igniarius, Fomiti- poria (Phellinus) punctata, and Perenniporia fraxinophila (table 1). Hosts—Phellinus igniarius has a wide host range, infecting species in over 20 genera of hardwoods. It is com- mon in birch, but has also been found in ash, black walnut, poplars, buckthorn, and willows. Fomitiporia punctata also has a wide host range. In a survey of North Dakota windbreaks, plantings, and natural stands, it was found on live willow, ash, Prunus, Rhamnus, Caragana, and Syringa. Perenniporia fraxinophila infects primarily ash species, with a few records on other hardwood genera and even junipers. Signs and Symptoms—Conks, the spore-producing fruiting bodies, are evidence of infection, but they are not always present on infected trees. Conks may form anywhere on the stem or branches (fig. 1), but are most common at branch stubs, in cankers, and near cavity open- ings. In addition to conks, symptoms may be evident. Openings leading to internal hollows (cavities) may form, especially at branch stubs or openings created by cavity-nesting birds (fig. 2).Fomitiporia punctata also causes cankers, or patches of killed bark—such a disease caused by wood-decay fungi is called a canker rot. The fungus decays wood inside the stem but grows out along branch traces and kills the cam- bium around branch stubs, which results in death of the overlying bark.
    [Show full text]
  • Taxonomy and Diversity of the Genus Phellinus Quél. S.S. (Basidiomycota, Hymenochaetaceae) in Koderma Wildlife Sanctuary, Jharkhand, India
    ISSN (Online): 2349 -1183; ISSN (Print): 2349 -9265 TROPICAL PLANT RESEARCH 6(3): 472–485, 2019 The Journal of the Society for Tropical Plant Research DOI: 10.22271/tpr.2019.v6.i3.058 Research article Taxonomy and diversity of the Genus Phellinus Quél. s.s. (Basidiomycota, Hymenochaetaceae) in Koderma wildlife sanctuary, Jharkhand, India Arvind Parihar1*, Y. V. Rao2, S.B. Padal2, Kanad Das1 and M. E. Hembrom3 1 Cryptogamic Unit, Botanical Survey of India, P.O. Botanical Garden, Howrah, West Bengal, India 2 Department of Botany, Andhra University Visakhapatnam, Andhra Pradesh, India 3 Central National Herbarium, Botanical Survey of India, P.O. Botanical Garden, Howrah, West Bengal, India *Corresponding Author: [email protected] [Accepted: 11 December 2019] Abstract: The Genus Phellinus Quél. s. s. is a diverse genus in the Family Hymenochaetaceae, which is represented by 12 species in the Koderma Wildlife Sanctuary (KWS), Jharkhand. In the present communication important macro- and micro-morphological features of the species of Phellinus Quél. s.s. present in KWLS is given. An artificial key to the species present in KWLS is also provided. Keywords: Phellinus - Taxonomy - Macrofungi - Koderma - Jharkhand. [Cite as: Parihar A, Rao YV, Padal SB, Das K & Hembrom ME (2019) Taxonomy and diversity of the Genus Phellinus Quél. s.s. (Basidiomycota, Hymenochaetaceae) in Koderma wildlife sanctuary, Jharkhand, India. Tropical Plant Research 6(3): 472–485] INTRODUCTION Traditionally genus Phellinus Quél. (a macrofungal genus causing serious wood rot) was considered as one of the largest genera of the family Hymenochaetaceae. This genus was described to encompass poroid Hymenochaetaceae (Hymenochaetales, Basidiomycota) with perennial basidiomata and a dimitic hyphal system (Larsen & Cobb-Poulle 1990, Wagner & Fischer 2002) but these characteristic features gradually appeared to be artificial because many intermediate forms have also been reported by many workers (Fiasson & Niemelä 1984, Corner 1991, Dai 1995, 1999, 2010, Fischer 1995, Wagner & Fischer 2001).
    [Show full text]
  • Root Rots, Butt Rots & Stem Decays of Alaskan Trees
    Root Rots, Butt Rots & Stem Decays of Alaskan Trees DAMAGE AGENTS PAGE Root & Butt Rots (Unknown) 1 Armillaria species / Armillaria Root Rot 3 Heterobasidion occidentale / Heterobasidion Root Rot 5 Onnia tomentosa / Tomentosus Root Rot 7 Phaeolus schweinitzii / Velvet Top 9 Pholiota species / Yellow Cap Fungus 11 Stem Decays (Unknown) 13 Echinodontium tinctorium / Paint Fungus 15 Fomes fomentarius / Tinder Conk 17 Fomitopsis officinalis / Quinine Conk 19 Fomitopsis pinicola / Red Belt Conk 21 Ganoderma applanatum / Artist’s Conk 23 Ganoderma tsugae / Varnish Conk 25 Inonotus obliquus / Cinder Conk 27 Laetiporus sulphureus / Chicken of the woods 29 Phellinus hartigii / Hartigs Conk 31 Phellinus igniarius and P. tremulae/ False Tinder Conk 33 Piptoporus betulinus / Birch Conk 35 Porodaedalea pini / Red Ring Rot 37 0 Root and Butt Rots 1 Root and Butt Rots Hosts: All tree species in Alaska. ID: Decayed roots and butts. Mushrooms, conks, or other fungal structures on the root collar or roots (nonpathogenic mushrooms and conks can also be found near tree bases). Uprooted trees have few remaining roots (root ball, root wad). The direction of tree fall may be inconsistent rather than with the direction of prevailing wind. Remarks: The known root and butt diseases in Alaska are caused by internal wood decay (rot) fungi that may overlap with stem decay fungi. Butt rot fungi decay the heartwood at the base of the stem. Trees can live with butt rot for years or decades. Tree mortality usually occurs due to uprooting or snapping associated with the loss of structural integrity. 2 Armillaria species Armillaria Root Rot mycelial fans 3 rhizomorphs Hosts: All tree species in Alaska.
    [Show full text]
  • Polypore–Beetle Associations in Finland
    Ann. Zool. Fennici 48: 319–348 ISSN 0003-455X (print), ISSN 1797-2450 (online) Helsinki 30 December 2011 © Finnish Zoological and Botanical Publishing Board 2011 Polypore–beetle associations in Finland Dmitry S. Schigel Metapopulation Research Group, Department of Biosciences, Faculty of Biological and Environmental Sciences, P.O. Box 65, FI-00014 University of Helsinki, Finland (e-mail: [email protected]) Received 21 Jan. 2011, revised version received 4 May 2011, accepted 10 Aug. 2011 Schigel, D. S. 2011: Polypore–beetle associations in Finland. — Ann. Zool. Fennici 48: 319–348. Seven old-growth, mostly spruce- and pine-dominated, protected forests rich in dead wood were inventoried for polypores and polypore-associated beetles in Finland in 2001–2007. A total of 198 polypore species (86% of the Finnish species list) were examined for associated Coleoptera. Of these, 116 species (59% of the studied species, or 50% of the Finnish polypore mycota) were found to host adults and/or larvae of 176 beetle species. Fifty-six polypore species were utilized by larvae of 21 beetle spe- cies. Many new fungus–beetle associations were discovered among 544 species pairs, including 421 polypore fruit body–adult Coleoptera species co-occurrences, and 123 fruit body–larva associations. Eighty-two species of fungi (41% of the studied species, or 36% of the Finnish polypores) were neither visited nor colonized by Coleoptera. Introduction Nikitsky (1993) reported the host fungi of Myc- etophagidae of Russia and adjacent countries, During recent decades polypores have become and Krasutskiy (2005) reported 208 fungicolous one of the taxonomically best-studied groups beetles and 89 species of their host fungi in of forest organisms in Finland (Niemelä 2005).
    [Show full text]
  • Mushroom Hunting and Consumption in Twenty-First Century Post-Industrial Sweden Ingvar Svanberg* and Hanna Lindh
    Svanberg and Lindh Journal of Ethnobiology and Ethnomedicine (2019) 15:42 https://doi.org/10.1186/s13002-019-0318-z RESEARCH Open Access Mushroom hunting and consumption in twenty-first century post-industrial Sweden Ingvar Svanberg* and Hanna Lindh Abstract Background: The pre-industrial diet of the Swedish peasantry did not include mushrooms. In the 1830s, some academic mycologists started information campaigns to teach people about edible mushrooms. This propaganda met with sturdy resistance from rural people. Even at the beginning of the last century, mushrooms were still only being occasionally eaten, and mostly by the gentry. During the twentieth century, the Swedish urban middle class accepted mushrooms as food and were closely followed by the working-class people. A few individuals became connoisseurs, but most people limited themselves to one or two taxa. The chanterelle, Cantharellus cibarius Fr., was (and still is) the most popular species. It was easy to recognize, and if it was a good mushroom season and the mushroomer was industrious, considerable amounts could be harvested and preserved or, from the late 1950s, put in the freezer. The aim of this study is to review the historical background of the changes in attitude towards edible mushrooms and to record today’s thriving interest in mushrooming in Sweden. Methods: A questionnaire was sent in October and November 2017 to record contemporary interest in and consumption of mushrooms in Sweden. In total, 100 questionnaires were returned. The qualitative analysis includes data extracted from participant and non-participant observations, including observations on activities related to mushroom foraging posted on social media platforms, revealed through open-ended interviews and in written sources.
    [Show full text]
  • A Few Winter Fungi by Kevin T
    A Few Winter Fungi by Kevin T. Smith Winter walks around my Portland neighborhood remind me how fungi are exquisitely tuned in to environmental factors including short term weather and seasonal change. Most of this past growing season has been especially rich in fungal abundance and diversity. The same cold snaps that signal autumnal senescence and fall foliage coloration in broadleaved trees also seem to stimulate a last wave of fruiting by a range of macro-fungi. As the northern forest moves into the more muted tones of late fall and the monochrome of winter, I like to imagine that the fungi know that they have a limited time so they hurry along to produce mushrooms. As understory herbaceous plants die back to the ground and the woodland trees and shrubs shed their leaves, fruiting bodies and other fungal survival structures tend to become more prominent. The challenge of winter The challenge of winter cold for fungi begins with the simple chemical fact that every 10°C reduction in temperature is accompanied by a halving of the rate of chemical reactions. Fungal mycelia, those thin threads that comprise the thallus or body of a mushroom-producing fungus, are especially vulnerable to low temperatures. As water freezes, ice crystals expand and break cell membranes that both contain and participate in vital transfers of chemicals and energy. As water in the soil or other substratum freezes, living cells are threatened by desiccation as well as freezing. Under proper conditions, fungi can reduce freeze injury by biosynthesis of specialized carbohydrates and proteins. Biosynthesis of sugar alcohols such as glycerol and ribitol lower the actual freezing point of living cell contents.
    [Show full text]
  • The Star Carr Fungi Harry K
    CHAPTER 31 The Star Carr Fungi Harry K. Robson Introduction ‘Quantities of a large bracket fungus identified by Mr E. J. H. Corner of the Botany School, Cambridge University, were found. A few specimens adhered to birch stems, but most are presumed to have been gathered. In some examples the flesh has been stripped off, possibly for use, as Mr Corner suggests, as tinder (amadou).’ (Clark 1954, 18) Although Clark (1954) referenced the original report by Corner (1950), which was based on the fungi recov- ered from the 1950 excavation campaign, he does not provide any further information on the assemblage. Consequently there is no way of knowing whether any further specimens were recovered during the 1949 and 1951 excavation campaigns. Moreover, neither Corner (1950) nor Clark (1954) stated how many specimens were found or provided any quantification for the number of specimens that were burnt or modified. From the archive mapping undertaken by Milner et al. (2013a), at least 11 specimens are known to exist. A total of nine specimens were recorded in the collections at the Rotunda Museum in Scarborough. In addition, one is presently on display at the Whitby Museum (Milner et al. 2013b), and another one is on display at the British Museum. Corner’s report (1950) states that the large bracket fungus was identified based on the microscopic structure and comparison with recently collected specimens. According to Corner (1950), the absence of spores was attributable to their germination in water or to their decay. However, it was also noted that spores have not been recorded on living specimens, except during the spring, and so it is possible that those from Star Carr may have been collected during the summer or autumn months ‘when it is usual for “foresters” to fell trees or to collect bark (in preference to spring when the sap is rising and makes the wood wet and the implement clog)’ (Corner 1950, 124).
    [Show full text]