An Overview of Aphyllophorales (Wood Rotting Fungi) from India
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Comparative and Population Genomics Landscape of Phellinus Noxius
bioRxiv preprint doi: https://doi.org/10.1101/132712; this version posted September 17, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Comparative and population genomics landscape of Phellinus noxius: 2 a hypervariable fungus causing root rot in trees 3 4 Chia-Lin Chung¶1,2, Tracy J. Lee3,4,5, Mitsuteru Akiba6, Hsin-Han Lee1, Tzu-Hao 5 Kuo3, Dang Liu3,7, Huei-Mien Ke3, Toshiro Yokoi6, Marylette B Roa3,8, Meiyeh J Lu3, 6 Ya-Yun Chang1, Pao-Jen Ann9, Jyh-Nong Tsai9, Chien-Yu Chen10, Shean-Shong 7 Tzean1, Yuko Ota6,11, Tsutomu Hattori6, Norio Sahashi6, Ruey-Fen Liou1,2, Taisei 8 Kikuchi12 and Isheng J Tsai¶3,4,5,7 9 10 1Department of Plant Pathology and Microbiology, National Taiwan University, Taiwan 11 2Master Program for Plant Medicine, National Taiwan University, Taiwan 12 3Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 13 4Biodiversity Program, Taiwan International Graduate Program, Academia Sinica and 14 National Taiwan Normal University 15 5Department of Life Science, National Taiwan Normal University 16 6Department of Forest Microbiology, Forestry and Forest Products Research Institute, 17 Tsukuba, Japan 18 7Genome and Systems Biology Degree Program, National Taiwan University and Academia 19 Sinica, Taipei, Taiwan 20 8Philippine Genome Center, University of the Philippines, Diliman, Quezon City, Philippines 21 1101 -
Relationships Between Wood-Inhabiting Fungal Species
Silva Fennica 45(5) research articles SILVA FENNICA www.metla.fi/silvafennica · ISSN 0037-5330 The Finnish Society of Forest Science · The Finnish Forest Research Institute Relationships between Wood-Inhabiting Fungal Species Richness and Habitat Variables in Old-Growth Forest Stands in the Pallas-Yllästunturi National Park, Northern Boreal Finland Inari Ylläsjärvi, Håkan Berglund and Timo Kuuluvainen Ylläsjärvi, I., Berglund, H. & Kuuluvainen, T. 2011. Relationships between wood-inhabiting fungal species richness and habitat variables in old-growth forest stands in the Pallas-Yllästunturi National Park, northern boreal Finland. Silva Fennica 45(5): 995–1013. Indicators for biodiversity are needed for efficient prioritization of forests selected for conservation. We analyzed the relationships between 86 wood-inhabiting fungal (polypore) species richness and 35 habitat variables in 81 northern boreal old-growth forest stands in Finland. Species richness and the number of red-listed species were analyzed separately using generalized linear models. Most species were infrequent in the studied landscape and no species was encountered in all stands. The species richness increased with 1) the volume of coarse woody debris (CWD), 2) the mean DBH of CWD and 3) the basal area of living trees. The number of red-listed species increased along the same gradients, but the effect of basal area was not significant. Polypore species richness was significantly lower on western slopes than on flat topography. On average, species richness was higher on northern and eastern slopes than on western and southern slopes. The results suggest that a combination of habitat variables used as indicators may be useful in selecting forest stands to be set aside for polypore species conservation. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
The Cardioprotective Properties of Agaricomycetes Mushrooms Growing in the Territory of Armenia (Review) Susanna Badalyan, Anush Barkhudaryan, Sylvie Rapior
The Cardioprotective Properties of Agaricomycetes Mushrooms Growing in the Territory of Armenia (Review) Susanna Badalyan, Anush Barkhudaryan, Sylvie Rapior To cite this version: Susanna Badalyan, Anush Barkhudaryan, Sylvie Rapior. The Cardioprotective Properties of Agari- comycetes Mushrooms Growing in the Territory of Armenia (Review). International Journal of Medic- inal Mushrooms, Begell House, 2021, 23 (5), pp.21-31. 10.1615/IntJMedMushrooms.2021038280. hal-03202984 HAL Id: hal-03202984 https://hal.umontpellier.fr/hal-03202984 Submitted on 20 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. The Cardioprotective Properties of Agaricomycetes Mushrooms Growing in the territory of Armenia (Review) Susanna M. Badalyan 1, Anush Barkhudaryan 2, Sylvie Rapior 3 1Laboratory of Fungal Biology and Biotechnology, Institute of Pharmacy, Department of Biomedicine, Yerevan State University, Yerevan, Armenia; 2Department of Cardiology, Clinic of General and Invasive Cardiology, University Hospital № 1, Yerevan State Medical University, Yerevan, Armenia; -
Toxic Fungi of Western North America
Toxic Fungi of Western North America by Thomas J. Duffy, MD Published by MykoWeb (www.mykoweb.com) March, 2008 (Web) August, 2008 (PDF) 2 Toxic Fungi of Western North America Copyright © 2008 by Thomas J. Duffy & Michael G. Wood Toxic Fungi of Western North America 3 Contents Introductory Material ........................................................................................... 7 Dedication ............................................................................................................... 7 Preface .................................................................................................................... 7 Acknowledgements ................................................................................................. 7 An Introduction to Mushrooms & Mushroom Poisoning .............................. 9 Introduction and collection of specimens .............................................................. 9 General overview of mushroom poisonings ......................................................... 10 Ecology and general anatomy of fungi ................................................................ 11 Description and habitat of Amanita phalloides and Amanita ocreata .............. 14 History of Amanita ocreata and Amanita phalloides in the West ..................... 18 The classical history of Amanita phalloides and related species ....................... 20 Mushroom poisoning case registry ...................................................................... 21 “Look-Alike” mushrooms ..................................................................................... -
A New Morphological Arrangement of the Polyporales. I
A new morphological arrangement of the Polyporales. I. Phanerochaetineae © Ivan V. Zmitrovich, Vera F. Malysheva,* Wjacheslav A. Spirin** V.L. Komarov Botanical Institute RAS, Prof. Popov str. 2, 197376, St-Petersburg, Russia e-mail: [email protected], *[email protected], **[email protected] Zmitrovich I.V., Malysheva V.F., Spirin W.A. A new morphological arrangement of the Polypo- rales. I. Phanerochaetineae. Mycena. 2006. Vol. 6. P. 4–56. UDC 582.287.23:001.4. SUMMARY: A new taxonomic division of the suborder Phanerochaetineae of the order Polyporales is presented. The suborder covers five families, i.e. Faerberiaceae Pouzar, Fistuli- naceae Lotsy (including Jülich’s Bjerkanderaceae, Grifolaceae, Hapalopilaceae, and Meripi- laceae), Laetiporaceae Jülich (=Phaeolaceae Jülich), and Phanerochaetaceae Jülich. As a basis of the suggested subdivision, features of basidioma micromorphology are regarded, with special attention to hypha/epibasidium ratio. Some generic concepts are changed. New genera Raduliporus Spirin & Zmitr. (type Polyporus aneirinus Sommerf. : Fr.), Emmia Zmitr., Spirin & V. Malysheva (type Polyporus latemarginatus Dur. & Mont.), and Leptochaete Zmitr. & Spirin (type Thelephora sanguinea Fr. : Fr.) are described. The genus Byssomerulius Parmasto is proposed to be conserved versus Dictyonema C. Ag. The genera Abortiporus Murrill and Bjer- kandera P. Karst. are reduced to Grifola Gray. In total, 69 new combinations are proposed. The species Emmia metamorphosa (Fuckel) Spirin, Zmitr. & Malysheva (commonly known as Ceri- poria metamorphosa (Fuckel) Ryvarden & Gilb.) is reported as new to Russia. Key words: aphyllophoroid fungi, corticioid fungi, Dictyonema, Fistulinaceae, homo- basidiomycetes, Laetiporaceae, merulioid fungi, Phanerochaetaceae, phylogeny, systematics I. INTRODUCTORY NOTES There is no general agreement how to outline the limits of the forms which should be called phanerochaetoid fungi. -
Polypore Fungi As a Flagship Group to Indicate Changes in Biodiversity – a Test Case from Estonia Kadri Runnel1* , Otto Miettinen2 and Asko Lõhmus1
Runnel et al. IMA Fungus (2021) 12:2 https://doi.org/10.1186/s43008-020-00050-y IMA Fungus RESEARCH Open Access Polypore fungi as a flagship group to indicate changes in biodiversity – a test case from Estonia Kadri Runnel1* , Otto Miettinen2 and Asko Lõhmus1 Abstract Polyporous fungi, a morphologically delineated group of Agaricomycetes (Basidiomycota), are considered well studied in Europe and used as model group in ecological studies and for conservation. Such broad interest, including widespread sampling and DNA based taxonomic revisions, is rapidly transforming our basic understanding of polypore diversity and natural history. We integrated over 40,000 historical and modern records of polypores in Estonia (hemiboreal Europe), revealing 227 species, and including Polyporus submelanopus and P. ulleungus as novelties for Europe. Taxonomic and conservation problems were distinguished for 13 unresolved subgroups. The estimated species pool exceeds 260 species in Estonia, including at least 20 likely undescribed species (here documented as distinct DNA lineages related to accepted species in, e.g., Ceriporia, Coltricia, Physisporinus, Sidera and Sistotrema). Four broad ecological patterns are described: (1) polypore assemblage organization in natural forests follows major soil and tree-composition gradients; (2) landscape-scale polypore diversity homogenizes due to draining of peatland forests and reduction of nemoral broad-leaved trees (wooded meadows and parks buffer the latter); (3) species having parasitic or brown-rot life-strategies are more substrate- specific; and (4) assemblage differences among woody substrates reveal habitat management priorities. Our update reveals extensive overlap of polypore biota throughout North Europe. We estimate that in Estonia, the biota experienced ca. 3–5% species turnover during the twentieth century, but exotic species remain rare and have not attained key functions in natural ecosystems. -
Kavaka Title Curve-44.Cdr
VOL 44 2015 MYCOLOGICAL SOCIETY OF INDIA President PROF. B. N. JOHRI Past President PROF. T. SATYANARAYANA Vice President DR. M.V. DESHPANDE Secretary PROF. N. RAAMAN Treasurer PROF. M. SUDHAKARA REDDY Editor PROF. N.S. ATRI Editorial Board PROF. NILS HALLEMBERG, PROF. URMAS KOLJALG, PROF. B.P.R. VITTAL, PROF. ASHOK CHAVAN, PROF. S. MOHAN, KARUPPAYIL, PROF. M. CHANDRASEKARAN, PROF. K. MANJUNATH, DR. S.K. DESHMUKH, DR. R.C. UPADHYAY, PROF. SARITA W. NAZARETH, DR. M.V. DESHPANDE, DR. MUNRUCHI KAUR Members of Council PROF. N.K. DUBEY, DR. SAJAL SAJU DEO, DR. RUPAM KAPOOR, PROF. YASHPAL SHARMA, DR. AVNEET PAL SINGH, DR. SANJAY K. SINGH, DR. CHINTHALA PARAMAGEETHAM, DR. K.B. PURUSHOTHAMA, DR. K. SAMBANDAN, DR. SATISH KUMAR VERMA The Mycological Society of India was founded in January 1973 with a view to bring together the mycologists of the country and with the broad objective of promoting the development of Mycology in India in all its aspects and in the widest perspective. Memebership is open to all interested in mycology. The Life Member subscription is Rs. 3000+50/- in India and £100 or US$ 200 for those in abroad. The annual member subscription is Rs. 500+50/- in India and £20 or US $ 40 for those in abroad. Subscriptions are to be sent to the Treasurer,Prof. M. Sudhakara Reddy, Department of Biotechnology, Thaper University, Patiala-147004, Punjab, India (Email: [email protected] ). All general correspondence should be addressed toProf. N.Raaman, Secretary, MSI, C.A.S. in Botany, University of Madras, Guindy Campus, Chennai-600 025, India(Email: [email protected] ). -
1 the SOCIETY LIBRARY CATALOGUE the BMS Council
THE SOCIETY LIBRARY CATALOGUE The BMS Council agreed, many years ago, to expand the Society's collection of books and develop it into a Library, in order to make it freely available to members. The books were originally housed at the (then) Commonwealth Mycological Institute and from 1990 - 2006 at the Herbarium, then in the Jodrell Laboratory,Royal Botanic Gardens Kew, by invitation of the Keeper. The Library now comprises over 1100 items. Development of the Library has depended largely on the generosity of members. Many offers of books and monographs, particularly important taxonomic works, and gifts of money to purchase items, are gratefully acknowledged. The rules for the loan of books are as follows: Books may be borrowed at the discretion of the Librarian and requests should be made, preferably by post or e-mail and stating whether a BMS member, to: The Librarian, British Mycological Society, Jodrell Laboratory Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB Email: <[email protected]> No more than two volumes may be borrowed at one time, for a period of up to one month, by which time books must be returned or the loan renewed. The borrower will be held liable for the cost of replacement of books that are lost or not returned. BMS Members do not have to pay postage for the outward journey. For the return journey, books must be returned securely packed and postage paid. Non-members may be able to borrow books at the discretion of the Librarian, but all postage costs must be paid by the borrower. -
Field Guide for Danger Tree Identification and Response
United States Department of Agriculture Field Guide for Forest Service Pacific Northwest Danger Tree Region Identification and United States Response Department of Interior Bureau of Land Management Oregon Associated Oregon OSHA Loggers, Inc. Inside Front Cover Field Guide for Danger Tree Identification and Response Richard Toupin Regional Logging Engineer, Gregory Filip Regional Forest Pathologist, Thomas Erkert Transportation Group Leader Pacific Northwest Region USDA Forest Service • Michael Barger Logging Specialist Salem District USDI Bureau of Land Management • 2008 Acknowledgements We thank the following people who contributed to revising this guide: Diane Hildebrand, Donald Goheen, Craig Schmitt, Kristen Chadwick, Angel Saavedra, and Katrina Mallams. Graphic Design: Michael Hamel (FS) The U.S. Department of Agriculture (USDA) prohibits discrimination in all its programs and activities on the basis of race, color, national origin, age, disability, and where applicable, sex, marital status, familial status, parental status, religion, sexual orientation, genetic information, political beliefs, reprisal, or because all or part of an individual’s income is derived from any public assistance program. (Not all prohibited bases apply to all programs.) Persons with disabilities who require alternative means for communication of program information (Braille, large print, audiotape, etc.) should contract USDA’s TARGET Center at 202-720-2600 (voice and TDD). To file a complaint of discrimination, write to USDA, Director, Office of Civil Rights, 1400 Independence Avenue, S.W., Washington, D.C. 20250-9410, or call 800-795-3272 (voice) or 202-720-6382 (TDD). USDA is an equal opportunity provider and employer. R6-NR-FP-PR-01-08 1 2 Table of Contents Introduction ...............................................................5 Regulatory Basis ........................................................6 Responsibilities. -
S41598-019-52711-7.Pdf
www.nature.com/scientificreports OPEN The integration of metabolome and proteome reveals bioactive polyphenols and hispidin in ARTP mutagenized Phellinus baumii Henan Zhang1,5, Ruibing Chen2,5, Jingsong Zhang1, Qitao Bu2, Wenhan Wang1, Yanfang Liu1, Qing Li3, Ying Guo2, Lei Zhang2,4* & Yan Yang1* Phellinus baumii, also called “Sang Huang” in China, is broadly used as a kind of health food or folk medicine in Asia for its high biological activities, e.g. anti-tumor, anti-oxidation and anti-infammatory activities. Although some previous studies have indicated that polysaccharides and favonoids showed the activity of inhibiting tumor cells, the active metabolites of P. baumii needs further research. In our study, a stable P. baumii mutant (A67), generated by ARTP mutagenesis strategy, showed more signifcantly inhibiting tumor cells and enhancing antioxidant activity. Our further studies found that the increase of polyphenols content, especially hispidin, was an important reason of the biological activity enhancement of A67. According to the results of the integrated metabolome and proteome study, the increase of polyphenol content was caused by upregulation of the phenylpropanoid biosynthesis. This study expanded the understanding of active compounds and metabolic pathway of P. baumii. Phellinus baumii, a well-known fungus in Hymenochaetaceae family, grows on mulberry trees. It is a famous edi- ble mushroom in Asia and it is commonly called “Sang Huang” in China and “Meshimakobu” in Japan1. In China, P. baumii is even known as “biogold” for its health value and medicinal value2. Its fruiting body is traditionally used as a folk medicine for its high biological activities, e.g. -
Stem Decays of Hardwoods in the Plains Numerous Decay Fungi, Numerous Hosts
Stem Decays of Hardwoods in the Plains Numerous decay fungi, numerous hosts Pathogen—Many fungi decay wood in the roots, butts, and stems of hardwoods in the Great Plains of South Dakota, Nebraska, Kansas, and Colorado. Three stem-decay fungi are presented here: Phellinus igniarius, Fomiti- poria (Phellinus) punctata, and Perenniporia fraxinophila (table 1). Hosts—Phellinus igniarius has a wide host range, infecting species in over 20 genera of hardwoods. It is com- mon in birch, but has also been found in ash, black walnut, poplars, buckthorn, and willows. Fomitiporia punctata also has a wide host range. In a survey of North Dakota windbreaks, plantings, and natural stands, it was found on live willow, ash, Prunus, Rhamnus, Caragana, and Syringa. Perenniporia fraxinophila infects primarily ash species, with a few records on other hardwood genera and even junipers. Signs and Symptoms—Conks, the spore-producing fruiting bodies, are evidence of infection, but they are not always present on infected trees. Conks may form anywhere on the stem or branches (fig. 1), but are most common at branch stubs, in cankers, and near cavity open- ings. In addition to conks, symptoms may be evident. Openings leading to internal hollows (cavities) may form, especially at branch stubs or openings created by cavity-nesting birds (fig. 2).Fomitiporia punctata also causes cankers, or patches of killed bark—such a disease caused by wood-decay fungi is called a canker rot. The fungus decays wood inside the stem but grows out along branch traces and kills the cam- bium around branch stubs, which results in death of the overlying bark.