Local to Continentalscale Variation in the Richness and Composition of An
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Rates of Nucleotide Substitution in Sexual and Anciently Asexual Rotifers
Rates of nucleotide substitution in sexual and anciently asexual rotifers David B. Mark Welch and Matthew S. Meselson* Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138 Contributed by Matthew S. Meselson, March 26, 2001 The class Bdelloidea of the phylum Rotifera is the largest well develop into highly reduced haploid males that, by mating with studied eukaryotic taxon in which males and meiosis are unknown, females bearing haploid eggs, give rise to females that reinitiate and the only one for which these indications of ancient asexuality the asexual cycle (22, 23). are supported by cytological and molecular genetic evidence. We Bdelloid remains have been reported in 30–40-million-year- estimated the rates of synonymous and nonsynonymous substi- old amber (24) and measurements of DNA sequence divergence tutions in the hsp82 heat shock gene in bdelloids and in faculta- suggest that bdelloids and monogononts separated well before tively sexual rotifers of the class Monogononta, employing dis- that (19, 20, 25). Bdelloids and monogononts seem to be similar tance based and maximum likelihood methods. Relative-rate tests, in genomic DNA content, with about 109 bp in the species that using acanthocephalan rotifers as an outgroup, showed slightly have been studied (26, 27). They also have comparable fecundity higher rates of nonsynonymous substitution and slightly lower and generation times, with 16–32 oocytes per ovary and an Ϸ rates of synonymous substitution in bdelloids as compared with average of 2–3 weeks between generations under favorable monogononts. The opposite trend, however, was seen in intraclass conditions (26, 28–32). -
Rotifera Bdelloidea
Rotifera Bdelloidea ROTIFERA BDELLOIDEA Diego Fontaneto Imperial College London, Division of Biology, Silwood Park Campus, Ascot Berkshire, SL57PY, United Kingdom [email protected] Abstract Bdelloid rotifers are microscopic aquatic animals, generally smaller than 1 mm. They can be found in any water body, but also in mosses, lichens and soil, due to their ability to survive desiccation entering dormancy. Dormant stages can also act as propagules for passive dispersal. These animals are very important in evolutionary biology, as they are the most diverse and old of the ‘ancient asexuals’. The following text is adapted from Fontaneto, D. & Ricci, C. (2004) Rotifera: Bdelloidea. In: Yule C.M. & Yong H.S. (eds.), Freshwater invertebrates of the Malaysian Region. Academy of Sciences Malaysia, Kuala Lumpur, Malaysia, pp. 121-126. Additional information on rotifers in general can be found in Wallace R.L., Snell T.W., Ricci C. & Nogrady T., 2006. Rotifera. Volume 1: Biology, Ecology and Systematics (2nd edition). In: Dumont H.J.F., Guides to the identification of the microinvertebrates of the world. Kenobi Productions and Backhuys Publishers. 299 pp. An online key for families and genera of monogonont rotifers, limited to the marine habitat is available from http://www.pfeil-verlag.de/04biol/pdf/mm16_03.pdf Summer School in Taxonomy, Valdieri, Italy page 1 of 11 Rotifera Bdelloidea 1. Introduction The Bdelloidea is a class of rotifers that reproduce through ameiotic parthenogenesis only, and that are very common in several aquatic habitats (Donner 1965; Gilbert 1983; Ricci 1992; Mark Welch and Meselson 2000), and they have been named “evolutionary scandals” by Maynard Smith (1986), as they survived and speciated in the absence of sex. -
We Are Ready for Faunistic Surveys of Bdelloid Rotifers Through DNA Barcoding: the Example of Sphagnum Bogs of the Swiss Jura Mountains
Published in Limnetica 38, issue 1, 213-225, 2019 which should be used for any reference to this work 1 View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library We are ready for faunistic surveys of bdelloid rotifers through DNA barcoding: the example of Sphagnum bogs of the Swiss Jura Mountains Diego Fontaneto1,*, Ester M. Eckert1, Nikoleta Anicic1, Enrique Lara2,3 and Edward A. D. Mitchell2,4 1 National Research Council of Italy, Water Research Institute, Microbial Ecology Group, largo Tonolli 50, I-28922 Verbania Pallanza, Italy. 2 Laboratory of Soil Biodiversity, Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, CH-2000 Neuchâtel, Switzerland. 3 Real Jardín Botánico, CSIC, Plaza Murillo 2, ES-28014 Madrid, Spain. 4 Jardin Botanique de Neuchâtel, Chemin du Perthuis-du-Sault 58, CH-2000 Neuchâtel, Switzerland. * Corresponding author: [email protected] Received: 12/03/18 Accepted: 14/05/18 ABSTRACT We are ready for faunistic surveys of bdelloid rotifers through DNA barcoding: the example of Sphagnum bogs of the Swiss Jura Mountains The identification of biological diversity through DNA barcoding and metabarcoding of the organisms living in the field has the potential to revolutionise the way biological surveys and monitoring are performed. Yet, we still do not know if the current representativeness of the reference database of DNA sequence data is sufficient to allow such approaches. Here, we show that, at least for bdelloid rotifers (Metazoa; Rotifera; Bdelloidea) in Europe, current knowledge is ripe to perform such surveys. We show the results of an exercise performed on bdelloid rotifers in Sphagnum bogs of the Swiss Jura Mountain. -
Rotifers of Temporary Waters
International Review of Hydrobiology 2014, 99,3–19 DOI 10.1002/iroh.201301700 REVIEW ARTICLE Rotifers of temporary waters Elizabeth J. Walsh 1, Hilary A. Smith 2 and Robert L. Wallace 3 1 Department of Biological Sciences, University of Texas at El Paso, El Paso, TX, USA 2 Department of Biological Sciences, University of Notre Dame, Notre Dame, IN, USA 3 Department of Biology, Ripon College, Ripon, WI, USA While ubiquitous, temporary waters vary greatly in geographic distribution, origin, size, Received: January 30, 2013 connectivity, hydroperiod, and biological composition. However, all terminate as active Revised: September 4, 2013 habitats, transitioning into either dryness or ice, only to be restored when conditions improve. Accepted: September 19, 2013 Hydroperiod in some temporary habitats is cyclical and predictable, while in others it is sporadic. Although the rotifer communities of temporary waters are subjected to unique selective pressures within their habitats, species share many of the same adaptive responses. Here, we review temporary waters and their rotiferan inhabitants, examining community composition, life history, and evolutionary strategies that allow rotifers to flourish in these fluctuating environments. Keywords: Astatic waters / Biodiversity / Diapause / Ephemeral ponds / Life history adaptations 1 Introduction most monogononts undergo a true, endogenously regu- lated diapause [6] in the form of diapausing embryos Temporary waters, also termed astatic, ephemeral, (resting eggs). As adults, monogononts possess little intermittent, vernal, seasonal, or periodic, are those in capacity to withstand freezing [7] unless extraordinary which the entire habitat alternates between the presence of methods are employed [8]. However, the subitaneous liquid water and its absence. Water loss can occur via embryos of Brachionus plicatilis are capable of surviving direct drainage, percolation, evaporation, or freezing, with freezing using cryopreservation techniques [9]. -
Bdelloid Rotifers (Rotifera, Bdelloidea) of China: Diversity and New Records
A peer-reviewed open-access journal ZooKeys 941: 1–23Bdelloid (2020) rotifers (Rotifera, Bdelloidea) of China: diversity and new records 1 doi: 10.3897/zookeys.941.50465 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Bdelloid rotifers (Rotifera, Bdelloidea) of China: diversity and new records Yue Zeng1,2, Nan Wei3, Qing Wang1, Nataliia S. Iakovenko4,5, Ying Li1, Yufeng Yang1,2 1 Institute of Hydrobiology, College of Life Science and Technology, Jinan University, Guangzhou 510632, Chi- na 2 Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai, 519000, China 3 South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou 510530, China 4 Czech University of Life Sciences Prague, Faculty of Forestry and Wood Sciences, Kamýcká 129, CZ– 16521 Praha 6– Suchdol, Czech Republic 5 Schmalhausen Institute of Zoology NAS of Ukraine, Department of Fauna and Systematics, Bogdana Khmelnyts’kogo 15, 01601 Kyiv, Ukraine Corresponding author: Yufeng Yang ([email protected]) Academic editor: Yasen Mutafchiev | Received 26 January 2020 | Accepted 26 March 2020 | Published 16 June 2020 http://zoobank.org/FDDD1E54-33F9-4C3B-8CD3-9467D7E2CB79 Citation: Zeng Y, Wei N, Wang Q, Iakovenko NS, Li Y, Yang Y (2020) Bdelloid rotifers (Rotifera, Bdelloidea) of China: diversity and new records. ZooKeys 941: 1–23. https://doi.org/10.3897/zookeys.941.50465 Abstract Bdelloid rotifers are a group of microscopic invertebrates known for their obligate parthenogenesis and ex- ceptional resistance to extreme environments. Their diversity and distributions are poorly studied in Asia, especially in China. In order to better understand the species distribution and diversity of bdelloid rotifers in China, a scientific surveys of habitats was conducted with 61 samples (both terrestrial and aquatic habi- tats) from 11 provinces and regions of China, ranging from tropics to subtropics with a specific focus on poorly sampled areas (Oriental) during September 2017 to October 2018. -
Rotifera, Bdelloidea) from Chihuahuan Desert Populations Lina Kamel Hamdan University of Texas at El Paso, [email protected]
University of Texas at El Paso DigitalCommons@UTEP Open Access Theses & Dissertations 2010-01-01 Ecology and Genetics of Philodina megalotrocha (Rotifera, Bdelloidea) From Chihuahuan Desert Populations Lina Kamel Hamdan University of Texas at El Paso, [email protected] Follow this and additional works at: https://digitalcommons.utep.edu/open_etd Part of the Ecology and Evolutionary Biology Commons, and the Genetics Commons Recommended Citation Hamdan, Lina Kamel, "Ecology and Genetics of Philodina megalotrocha (Rotifera, Bdelloidea) From Chihuahuan Desert Populations" (2010). Open Access Theses & Dissertations. 2703. https://digitalcommons.utep.edu/open_etd/2703 This is brought to you for free and open access by DigitalCommons@UTEP. It has been accepted for inclusion in Open Access Theses & Dissertations by an authorized administrator of DigitalCommons@UTEP. For more information, please contact [email protected]. ECOLOGY AND GENETICS OF PHILODINA MEGALOTROCHA (ROTIFERA, BDELLOIDEA) FROM CHIHUAHUAN DESERT POPULATIONS LINA KAMEL HAMDAN Department of Biological Sciences APPROVED Elizabeth J. Walsh, Ph.D., Chair Carl S. Lieb, Ph.D. Diane I. Doser, Ph.D. Robert L. Wallace, Ph.D. Patricia D. Witherspoon, Ph.D. Dean of the Graduate School Copyright © by Lina Kamel Hamdan 2010 ii ECOLOGY AND GENETICS OF PHILODINA MEGALOTROCHA (ROTIFERA, BDELLOIDEA) FROM CHIHUAHUAN DESERT POPULATIONS by LINA KAMEL HAMDAN, B.S. THESIS Presented to the Faculty of the Graduate School of The University of Texas at El Paso in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE Department of Biological Sciences THE UNIVERSITY OF TEXAS AT EL PASO May 2010 iii ACKNOWLEDGEMENTS I would like to express my sincere appreciation to Dr. -
WASTEWATER MICROBIOLOGY Fourth Edition WASTEWATER MICROBIOLOGY Fourth Edition
WASTEWATER MICROBIOLOGY Fourth Edition WASTEWATER MICROBIOLOGY Fourth Edition GABRIEL BITTON Department of Environmental Engineering Sciences University of Florida, Gainesville, FL A John Wiley & Sons, Inc., Publication Copyright © 2011 by Wiley-Blackwell. All rights reserved Wiley-Blackwell is an imprint of John Wiley & Sons, formed by the merger of Wiley’s global Scientifi c, Technical and Medical business with Blackwell Publishing. Published by John Wiley & Sons, Inc., Hoboken, New Jersey Published simultaneously in Canada No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, scanning, or otherwise, except as permitted under Section 107 or 108 of the 1976 United States Copyright Act, without either the prior written permission of the Publisher, or authorization through payment of the appropriate per-copy fee to the Copyright Clearance Center, Inc., 222 Rosewood Drive, Danvers, MA 01923, (978) 750-8400, fax (978) 750-4470, or on the web at www.copyright.com. Requests to the Publisher for permission should be addressed to the Permissions Department, John Wiley & Sons, Inc., 111 River Street, Hoboken, NJ 07030, (201) 748-6011, fax (201) 748-6008, or online at http://www.wiley.com/go/permission. Limit of Liability/Disclaimer of Warranty: While the publisher and author have used their best efforts in preparing this book, they make no representations or warranties with respect to the accuracy or completeness of the contents of this book and specifi cally disclaim any implied warranties of merchantability or fi tness for a particular purpose. No warranty may be created or extended by sales representatives or written sales materials. -
Rotifera, Bdelloidea), a Model Organism for Bioassays Anais Da Academia Brasileira De Ciências, Vol
Anais da Academia Brasileira de Ciências ISSN: 0001-3765 [email protected] Academia Brasileira de Ciências Brasil MOREIRA, RAQUEL A.; MANSANO, ADRISLAINE S.; ROCHA, ODETE Life cycle traits of Philodina roseola Ehrenberg, 1830 (Rotifera, Bdelloidea), a model organism for bioassays Anais da Academia Brasileira de Ciências, vol. 88, núm. 1, 2016, pp. 579-588 Academia Brasileira de Ciências Rio de Janeiro, Brasil Available in: http://www.redalyc.org/articulo.oa?id=32746362013 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Anais da Academia Brasileira de Ciências (2016) 88(1 Suppl.): 579-588 (Annals of the Brazilian Academy of Sciences) Printed version ISSN 0001-3765 / Online version ISSN 1678-2690 http://dx.doi.org/10.1590/0001-3765201620140729 www.scielo.br/aabc Life cycle traits of Philodina roseola Ehrenberg, 1830 (Rotifera, Bdelloidea), a model organism for bioassays RAQUEL A. MOREIRA1, ADRISLAINE S. MANSANO1 and ODETE ROCHA1,2 1Post-Graduate Program of Ecology and Natural Resources, Federal University of São Carlos, Rodovia Washington Luis, Km 235, 13565-905 São Carlos, SP, Brazil 2Department of Ecology and Evolutionary Biology, Biological Sciences and Health Center, Federal University of São Carlos, Rodovia Washington Luis, Km 235, 13565-905 São Carlos, SP, Brazil Manuscript received on January 19, 2015; accepted for publication on May 14, 2015 ABSTRACT This paper describes experimental results on the life cycle of the rotifer Philodina roseola cultured in the laboratory. -
Taxonomy of Freshwater Bdelloid Rotifers in the Genus Rotaria (Rotifera, Bdelloidea, Philodinidae) in Thailand
Taxonomy of Freshwater Bdelloid Rotifers in the Genus Rotaria (Rotifera, Bdelloidea, Philodinidae) in Thailand Rapeepan Jaturapruek A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science in Zoology Prince of Songkla University 2016 Copyright of Prince of Songkla University i Taxonomy of Freshwater Bdelloid Rotifers in the Genus Rotaria (Rotifera, Bdelloidea, Philodinidae) in Thailand Rapeepan Jaturapruek A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science in Zoology Prince of Songkla University 2016 Copyright of Prince of Songkla University ii Thesis Title Taxonomy of Freshwater Bdelloid Rotifers in the Genus Rotaria (Rotifera, Bdelloidea, Philodinidae) in Thailand Author Miss Rapeepan Jaturapruek Major Program Zoology ____________________________________________________________________ Major Advisor Examining Committee : ............................................................... ...........................................Chairperson (Assoc.Prof. Dr. Pornsilp Pholpunthin) (Dr. Singtoe Boonrotpong) Co-advisor .............................................Committee (Assoc.Prof. Dr. Pornsilp Pholpunthin) ............................................................... (Asst. Prof. Dr. Supiyanit Maiphae) .............................................Committee (Asst. Prof. Dr. Supiyanit Maiphae) ............................................................... (Dr. Diego Fontaneto) .............................................Committee (Dr. Phuripong Meksuwan) -
Life Cycle Traits of Philodina Roseola Ehrenberg, 1830 (Rotifera, Bdelloidea), a Model Organism for Bioassays
Anais da Academia Brasileira de Ciências (2016) 88(1 Suppl.): 579-588 (Annals of the Brazilian Academy of Sciences) Printed version ISSN 0001-3765 / Online version ISSN 1678-2690 http://dx.doi.org/10.1590/0001-3765201620140729 www.scielo.br/aabc Life cycle traits of Philodina roseola Ehrenberg, 1830 (Rotifera, Bdelloidea), a model organism for bioassays RAQUEL A. MOREIRA1, ADRISLAINE S. MANSANO1 and ODETE ROCHA1,2 1Post-Graduate Program of Ecology and Natural Resources, Federal University of São Carlos, Rodovia Washington Luis, Km 235, 13565-905 São Carlos, SP, Brazil 2Department of Ecology and Evolutionary Biology, Biological Sciences and Health Center, Federal University of São Carlos, Rodovia Washington Luis, Km 235, 13565-905 São Carlos, SP, Brazil Manuscript received on January 19, 2015; accepted for publication on May 14, 2015 ABSTRACT This paper describes experimental results on the life cycle of the rotifer Philodina roseola cultured in the laboratory. Detailed information on life-cycle parameters of a certain species provides a deep understanding and contributes to a better knowledge of the role of the species in the community, besides providing data that are basic to other ecological investigations such as secondary production estimates and knowledge for applications such as its utilization as test-organism in ecotoxicological studies. The average duration of embryonic development of P. roseola was 23.88 h, the age at maturity of primipara was 3.5 days and the maximum lifespan was 23 days. The average size of the rotifer neonate was 198.77 μm, the mean size of primipara was 395.56 μm and for adults 429.96 μm. -
The Consequences of Life Without Sex an Examination Into Taxonomy and Evolution of the Anciently Asexual Bdelloid Rotifers
The Consequences of Life without Sex An Examination into Taxonomy and Evolution of the Anciently Asexual Bdelloid Rotifers Cuong Quoc Tang A thesis submitted for the degree of Doctor of Philosophy from the Department of Life Sciences, Imperial College London July 2014 59 The copyright of this thesis rests with the author and is made available under a Creative Commons Attribution-Non Commercial-No Derivatives licence. Researchers are free to copy, distribute or transmit the thesis on the condition that they attribute it, that they do not use it for commercial purposes and that they do not alter, transform or build upon it. For any reuse or distribution, researchers must make clear to others the licence terms of this work. 59 Abstract The anciently asexual bdelloid rotifers are a ubiquitous and ecologically important group coined “evolutionary scandals” owing to their diversification and persistence over evolutionary time despite the pressures of obligate parthenogenesis. Understanding the biodiversity of rotifers, in the context of reproductive mode, will aid in the understanding of how differences in sex and ecology drive biodiversity patterns. Given that resolved taxonomy is a prerequisite to investigating larger scale macroevolutionary patterns, and that rotifer taxonomy is confounded by morphostasis, cryptic diversity, and a dearth of expert taxonomists, this thesis first deals with the use of DNA taxonomy as a tool to alleviate the taxonomic crisis so prevalent in the group. Results from multiple meta-analyses exploring the effects of choice in gene, phylogenetic reconstruction methods, and species delimitation metrics, provide better guidelines for DNA taxonomy. The analyses suggest that coalescent-based DNA taxonomy using the Generalised Mixed Yule Coalescent model in conjunction with the cytochrome oxidase 1 subunit c gene analysed in a Bayesian inference phylogenetic framework using BEAST, provides realistic and tangible species clusters (evolutionarily significant units; ESU) in both asexual and sexual organisms. -
Understanding the Diversity and Community Structure of Bdelloid Rotifer Soil Communities
UNDERSTANDING THE DIVERSITY AND COMMUNITY STRUCTURE OF BDELLOID ROTIFER SOIL COMMUNITIES by MICHAEL SCOTT ROBESON II B.S., University of Tampa, l997 M.S., University of South Florida, 2001 A thesis submitted to the Faculty of the Graduate School of the University of Colorado in partial fulfillment of the requirement for the degree of Doctor of Philosophy Department of Ecology and Evolutionary Biology 2012 This Thesis entitled: Understanding the Diversity and Community Structure of Bdelloid Rotifer Soil Communities. written by Michael S. Robeson II has been approved for the Department of Ecology and Evolutionary Biology Steven K. Schmidt Rob Guralnick Date The final copy of this thesis has been examined by the signatories, and we find that both the content and the form meet acceptable presentation standards of scholarly work in the above mentioned discipline. iii Robeson, Michael Scott (Ph.D., Ecology and Evolutionary Biology) Understanding the Diversity and Community Structure of Bdelloid Rotifer Soil Communities. Thesis directed by Professor Steven K. Schmidt Abstract Rotifers, though very important to the microbial food-web and energy flux of a system, are still poorly understood in terms of their taxonomy and geographical distributions. Rotifers pose problems for taxonomists and evolutionary biologists due to the difficulties associated with isolation, identification and enumeration of organisms that have few distinguishing morphological characters. This lack of morphological information and their extreme abundance of micro-invertebrates make identification of rare, or even common cryptic, taxa a large and unwieldy task as only painstaking microscopy can be used to identify synapomorphies. To overcome these problems I made use of environmental DNA sequencing to perform large- scale surveys of bdelloid rotifer communities.