Α-Phellandrene Alters Expression of Genes Associated with DNA Damage, Cell Cycle, and Apoptosis in Murine Leukemia WEHI-3 Cells

Total Page:16

File Type:pdf, Size:1020Kb

Α-Phellandrene Alters Expression of Genes Associated with DNA Damage, Cell Cycle, and Apoptosis in Murine Leukemia WEHI-3 Cells ANTICANCER RESEARCH 34: 4161-4180 (2014) α-Phellandrene Alters Expression of Genes Associated with DNA Damage, Cell Cycle, and Apoptosis in Murine Leukemia WEHI-3 Cells JEN-JYH LIN1,2, CHIEN-CHIH YU3, KUNG-WEN LU1, SHU-JEN CHANG3, FU-SHUN YU4, CHING-LUNG LIAO1, JAUNG-GENG LIN1 and JING-GUNG CHUNG5,6 1Graduate Institute of Chinese Medicine, 3School of Pharmacy, Departments of 4Dentistry, and 5Biological Science and Technology, China Medical University, Taichung, Taiwan, R.O.C.; 2Division of Cardiology, China Medical University Hospital, Taichung, Taiwan, R.O.C.; 6Department of Biotechnology, Asia University, Taichung, Taiwan, R.O.C. Abstract. α-phellandrene (α-PA) is a cyclic monoterpene, regulated. Furthermore, DNA damage-associated gene TATA present in natural plants such as Schinus molle L. α-PA box binding protein was over 4-fold down-regulated, and promotes immune responses in mice in vivo. However, there D19Ertd652c (DNA segment) over 2-fold down-regulated; is no available information on whether α-PA affects gene cell cycle-associated gene cyclin E2 was over 2-fold down- expression in leukemia cells. The present study determined regulated; apoptosis associated gene growth arrest-specific effects of α-PA on expression levels of genes associated with 5 was over 9-fold down-regulated, Gm5426 (ATP synthase) DNA damage, cell cycle and apoptotic cell death in mouse was over 3-fold down-regulated, and death box polypeptide leukemia WEHI-3 cells. WEHI-3 cells were treated with 10 33 was over 2-fold down-regulated. Based on these μM α-PA for 24 h, cells were harvested and total RNA was observations, α-PA altered gene expression in WEHI-3 cells extracted, and gene expression was analyzed by cDNA in vitro. microarray. Results indicated that α-PA up-regulated 10 genes 4-fold, 13 by over 3-fold and 175 by over 2-fold; 21 Leukemia, a myeloproliferative disease (abnormal growth of genes were down-regulated by over 4-fold, 26 genes by over phenotypically immature leukocytes), is the second most 3-fold and expression of 204 genes was altered by at leas common type of cancer in children (1). The incidence of 2-fold compared with the untreated control cells. DNA leukemia in humans is increasing worldwide. Leukemia can damage-associated genes such as DNA damage-inducer be divided into acute myeloid leukemia (AML) and chronic transcript 4 and DNA fragmentation factor were up- myeloid leukemia (CML). In AML, Paired box 5 (PAX5) regulated by 4-fold and over 2-fold, respectively; cell-cycle expression selectively clusters with t(8;21) and it likely check point genes such as cyclin G2 and cyclin-dependent explains a peculiar biological feature of this subset of kinases inhibitor 2D and IA (p21) were up-regulated by over myeloid leukemias (2). In CML, NM23-H1 gene expression 3-fold and over 2-fold, respectively; apoptosis-associated may inhibit K562 cell proliferation and migration and genes such as BCL2/adenovirus EIB interacting protein 3, suggests that NM23-H1 may be a cancer-suppressor gene XIAP-associated factor 1, BCL2 modifying factor, caspase- and play a significant role in inhibiting the survival of CML 8 and FADD-like apoptosis regulator were over 2-fold up- cells (3). Currently, treatment for leukemia is unsatisfactory. Therapies with increased efficacy and decreased toxicity are, therefore, required. There is increasing interest in identifying Correspondence to: Dr. Jing-Gung Chung, Department of compounds from natural products. Biological Science and Technology, China Medical University, No α-Phellandrene (5-isopropyl-2-methyl-1,3-cyclohexadiene; 91, Hsueh-Shih Road, Taichung 40402, Taiwan, ROC. Tel: +886 α-PA) is a cyclic monoterpene and is a component in 422053366 ext 2161, Fax: +886 422053764, e-mail: essential oil of natural plants such as Schinus molle L., [email protected] and Jaung-Geng Lin, Graduate Institute Schinus terebinthifolius Raddi (4), and Zingiber officinale of Chinese Medicine, China Medical University, No 91, Hsueh-Shih Roscoe (5). Recently, we were the first to show that α-PA Road, Taichung 40402, Taiwan, R.O.C. Tel: +886 422053366 ext stimulated immune responses by increasing macrophage 3113, Fax: +886 422053764, e-mail: [email protected] phagocytosis and inducing natural killer cell cytotoxic effects Key Words: α-Phellandrene, cDNA microarray, cell cycle, DNA in normal Balb/c mice in vivo (6). The detection of leukemia- damage, apoptosis, WEHI-3 leukemia cells. associated gene expression (up- or down-regulation) is 0250-7005/2014 $2.00+.40 4161 ANTICANCER RESEARCH 34: 4161-4180 (2014) essential for diagnosis and therapy. Thus, in the present genes over 4-fold down-regulated, 26 genes over 3-fold study, we investigated the effects of α-PA on gene expression down-regulated and expression of 204 genes was altered by at of WEHI-3 cells in vitro and found that α-PA altered least 2-fold compared to the untreated control cells. expression of cell cycle-, DNA damage- and apoptosis- Our results showed that genes associated with DNA associated genes. damage such as DNA damage inducer transcript-4 was up- regulated 4-fold and DNA fragmentation factor was up- Materials and Methods regulated over 2-fold. Genes associated with the cell cycle (cell check point genes), such as cyclin G2, were up- Chemicals and reagents. α-PA, propidium iodide (PI) and dimethyl regulated over 3-fold, and cyclin-dependent kinase inhibitor sulfoxide (DMSO) were purchased from Sigma Chemical Co. (St. 2D and IA (p21) were up-regulated over 2-fold. Apoptosis- Louis, MO, USA). RPMI-1640 medium, glutamine, fetal bovine associated genes such as BCL2/adenovirus EIB interacting serum (FBS) and penicillin-streptomycin, trypsin-EDTA were purchased from Invitrogen (Carlsbad, CA, USA). protein 3, associated factor 3, BCL2-modifying factor, caspase-8 and like apoptosis regulator were up-regulated Cell culture. The mouse myelomonocytic WEHI-3 cell line was over 2-fold (Table I). Data in Table II shows that DNA purchased from the Food Industry Research and Development damage-associated genes such as TATA box binding proteins Institute (Hsinchu, Taiwan). Cells were grown in RPMI-1640 were down-regulated over 4-fold and DNA segment down- medium supplemented with 10% (v/v) fetal bovine serum (FBS), regulated over 2-fold. Cell cycle-associated genes such as 100 Units/ml penicillin, 100 μg/ml streptomycin and 2 mM L- cyclin F2 were down-regulated over 2-fold, apoptosis- glutamine (Sigma-Aldrich, St. Louis, MO, USA). The cells were associated genes such as growth arrest-specific 5 were over maintained in a humidified incubator with 5% CO2 at 37˚C, and the culture medium was changed every two days (7). 9-fold down-regulated, ATP synthase were over 3-fold down- cDNA microarray assay in WEHI-3 cells treated with α-PA. regulated, Death box polypeptide 33 was over 2-fold down- WEHI-3 cells were plated at a density of 5×105 cells/ml in 24-well regulated (Table II). plates containing RPMI-1640 medium with 10% (v/v) FBS and 2 mM The top alterations in gene expression scored by the L-glutamine, 100 Units/ml penicillin and 100 μg/ml streptomycin for number of pathway networks from GeneGo analysis program 24 h. After this procedure, cells were treated with 10 μM α-PA or (Taichung, Taiwain) from α-PA treated WEHI-3 cells for 48 h vehicle for 48 h and then harvested and centrifuged at 1500 × g for 5 min then washed twice with PBS. Total RNA was isolated using a can be seen in Figures 1-3. Experimental data are mapped on Qiagen RNeasy Mini Kit (Qiagen, Valencia, CA, USA) and used for the processes and shown as red (up regulation) and blue cDNA synthesis and labeling, microarray hybridization. In turn, this (down regulation) circles of different intensity. These genes was followed by fluorescent-labeled cDNA hybridization (Affymetrix may also be involved in DNA damage, cell cycle arrest and GeneChip Human Gene 1.0 ST array; Affymetrix, Santa Clara, CA, apoptosis-associated responses in α-PA-treated WEHI-3 cells. USA) on the chip as described previously (8). Fluorescence of the samples was quantitated by Asia BioInnovations Corporation (Taipei, Discussion Taiwan) and the data were analyzed using Expression Console software (Affymetrix) with default RNA parameters. For gene expression changes, a 1.8-fold difference in hybridization α-PA is present in plants such as Schinus molle L., Schinus intensity/average differences was considered significantly different terebinthifolius Raddi. (4) and Zingiber officinale Roscoe (5). compared with the control group (8-11). It has been used as a spice and perfume but its biological function is scarcely reported. We found that α-PA can induce Statistical analysis. All assays were carried out in triplicate, and the apoptosis of murine leukemia WEHI-3 cells (data not shown). results are presented as the means±SD. Genes regulated by α-PA by We previously showed that α-PA induced immune responses at least a 2-fold change were recorded. Data are representative of three separate assays. in normal mice (6), however, its exact effects on cells are still unclear. Thus, in the present study, we are the first to show Results that α-PA affects gene expression in WEHI-3 cells. Numerous studies have shown that cancer development, cDNA microarray analysis for α-PA-induced changes in progression, and response to therapeutic agents are associated expression of genes associated with DNA damage, cell cycle, with stromal cells, matrix proteins, and secreted molecules that and apoptosis in mouse myelomonocytic WEHI-3 cells. participate in the tumor microenvironment (12-14). Furthermore, WEHI-3 cells were treated with or without 10 μM α-PA for a better understanding of the tumor microenvironment may assist 48 h, then were harvested and total RNA from each treatment in the development of cell culture and media.
Recommended publications
  • Podocyte Specific Knockdown of Klf15 in Podocin-Cre Klf15flox/Flox Mice Was Confirmed
    SUPPLEMENTARY FIGURE LEGENDS Supplementary Figure 1: Podocyte specific knockdown of Klf15 in Podocin-Cre Klf15flox/flox mice was confirmed. (A) Primary glomerular epithelial cells (PGECs) were isolated from 12-week old Podocin-Cre Klf15flox/flox and Podocin-Cre Klf15+/+ mice and cultured at 37°C for 1 week. Real-time PCR was performed for Nephrin, Podocin, Synaptopodin, and Wt1 mRNA expression (n=6, ***p<0.001, Mann-Whitney test). (B) Real- time PCR was performed for Klf15 mRNA expression (n=6, *p<0.05, Mann-Whitney test). (C) Protein was also extracted and western blot analysis for Klf15 was performed. The representative blot of three independent experiments is shown in the top panel. The bottom panel shows the quantification of Klf15 by densitometry (n=3, *p<0.05, Mann-Whitney test). (D) Immunofluorescence staining for Klf15 and Wt1 was performed in 12-week old Podocin-Cre Klf15flox/flox and Podocin-Cre Klf15+/+ mice. Representative images from four mice in each group are shown in the left panel (X 20). Arrows show colocalization of Klf15 and Wt1. Arrowheads show a lack of colocalization. Asterisk demonstrates nonspecific Wt1 staining. “R” represents autofluorescence from RBCs. In the right panel, a total of 30 glomeruli were selected in each mouse and quantification of Klf15 staining in the podocytes was determined by the ratio of Klf15+ and Wt1+ cells to Wt1+ cells (n=6 mice, **p<0.01, unpaired t test). Supplementary Figure 2: LPS treated Podocin-Cre Klf15flox/flox mice exhibit a lack of recovery in proteinaceous casts and tubular dilatation after DEX administration.
    [Show full text]
  • Injury by Mechanical Ventilation Gene Transcription and Promotion Of
    Modulation of Lipopolysaccharide-Induced Gene Transcription and Promotion of Lung Injury by Mechanical Ventilation This information is current as William A. Altemeier, Gustavo Matute-Bello, Sina A. of September 29, 2021. Gharib, Robb W. Glenny, Thomas R. Martin and W. Conrad Liles J Immunol 2005; 175:3369-3376; ; doi: 10.4049/jimmunol.175.5.3369 http://www.jimmunol.org/content/175/5/3369 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2005/08/23/175.5.3369.DC1 Material http://www.jimmunol.org/ References This article cites 37 articles, 7 of which you can access for free at: http://www.jimmunol.org/content/175/5/3369.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 29, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2005 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Modulation of Lipopolysaccharide-Induced Gene Transcription and Promotion of Lung Injury by Mechanical Ventilation1 William A.
    [Show full text]
  • Blimp1 Regulates the Transition of Neonatal to Adult Intestinal Epithelium
    UCLA UCLA Previously Published Works Title Blimp1 regulates the transition of neonatal to adult intestinal epithelium. Permalink https://escholarship.org/uc/item/01x184nd Journal Nature communications, 2(1) ISSN 2041-1723 Authors Muncan, Vanesa Heijmans, Jarom Krasinski, Stephen D et al. Publication Date 2011-08-30 DOI 10.1038/ncomms1463 Peer reviewed eScholarship.org Powered by the California Digital Library University of California ARTICLE Received 11 May 2011 | Accepted 28 Jul 2011 | Published 30 Aug 2011 DOI: 10.1038/ncomms1463 Blimp1 regulates the transition of neonatal to adult intestinal epithelium Vanesa Muncan1,2,3, Jarom Heijmans1,2,3, Stephen D. Krasinski4, Nikè V. Büller1,2,3, Manon E. Wildenberg1,2,3, Sander Meisner1, Marijana Radonjic5, Kelly A. Stapleton4, Wout H. Lamers1, Izak Biemond3, Marius A. van den Bergh Weerman6, Dónal O’Carroll7, James C. Hardwick3, Daniel W. Hommes3 & Gijs R. van den Brink1,2,3 In many mammalian species, the intestinal epithelium undergoes major changes that allow a dietary transition from mother’s milk to the adult diet at the end of the suckling period. These complex developmental changes are the result of a genetic programme intrinsic to the gut tube, but its regulators have not been identified. Here we show that transcriptional repressor B lymphocyte-induced maturation protein 1 (Blimp1) is highly expressed in the developing and postnatal intestinal epithelium until the suckling to weaning transition. Intestine-specific deletion of Blimp1 results in growth retardation and excessive neonatal mortality. Mutant mice lack all of the typical epithelial features of the suckling period and are born with features of an adult-like intestine.
    [Show full text]
  • Defining Functional Interactions During Biogenesis of Epithelial Junctions
    ARTICLE Received 11 Dec 2015 | Accepted 13 Oct 2016 | Published 6 Dec 2016 | Updated 5 Jan 2017 DOI: 10.1038/ncomms13542 OPEN Defining functional interactions during biogenesis of epithelial junctions J.C. Erasmus1,*, S. Bruche1,*,w, L. Pizarro1,2,*, N. Maimari1,3,*, T. Poggioli1,w, C. Tomlinson4,J.Lees5, I. Zalivina1,w, A. Wheeler1,w, A. Alberts6, A. Russo2 & V.M.M. Braga1 In spite of extensive recent progress, a comprehensive understanding of how actin cytoskeleton remodelling supports stable junctions remains to be established. Here we design a platform that integrates actin functions with optimized phenotypic clustering and identify new cytoskeletal proteins, their functional hierarchy and pathways that modulate E-cadherin adhesion. Depletion of EEF1A, an actin bundling protein, increases E-cadherin levels at junctions without a corresponding reinforcement of cell–cell contacts. This unexpected result reflects a more dynamic and mobile junctional actin in EEF1A-depleted cells. A partner for EEF1A in cadherin contact maintenance is the formin DIAPH2, which interacts with EEF1A. In contrast, depletion of either the endocytic regulator TRIP10 or the Rho GTPase activator VAV2 reduces E-cadherin levels at junctions. TRIP10 binds to and requires VAV2 function for its junctional localization. Overall, we present new conceptual insights on junction stabilization, which integrate known and novel pathways with impact for epithelial morphogenesis, homeostasis and diseases. 1 National Heart and Lung Institute, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK. 2 Computing Department, Imperial College London, London SW7 2AZ, UK. 3 Bioengineering Department, Faculty of Engineering, Imperial College London, London SW7 2AZ, UK. 4 Department of Surgery & Cancer, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK.
    [Show full text]
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • Steroid-Dependent Regulation of the Oviduct: a Cross-Species Transcriptomal Analysis
    University of Kentucky UKnowledge Theses and Dissertations--Animal and Food Sciences Animal and Food Sciences 2015 Steroid-dependent regulation of the oviduct: A cross-species transcriptomal analysis Katheryn L. Cerny University of Kentucky, [email protected] Right click to open a feedback form in a new tab to let us know how this document benefits ou.y Recommended Citation Cerny, Katheryn L., "Steroid-dependent regulation of the oviduct: A cross-species transcriptomal analysis" (2015). Theses and Dissertations--Animal and Food Sciences. 49. https://uknowledge.uky.edu/animalsci_etds/49 This Doctoral Dissertation is brought to you for free and open access by the Animal and Food Sciences at UKnowledge. It has been accepted for inclusion in Theses and Dissertations--Animal and Food Sciences by an authorized administrator of UKnowledge. For more information, please contact [email protected]. STUDENT AGREEMENT: I represent that my thesis or dissertation and abstract are my original work. Proper attribution has been given to all outside sources. I understand that I am solely responsible for obtaining any needed copyright permissions. I have obtained needed written permission statement(s) from the owner(s) of each third-party copyrighted matter to be included in my work, allowing electronic distribution (if such use is not permitted by the fair use doctrine) which will be submitted to UKnowledge as Additional File. I hereby grant to The University of Kentucky and its agents the irrevocable, non-exclusive, and royalty-free license to archive and make accessible my work in whole or in part in all forms of media, now or hereafter known.
    [Show full text]
  • Yeast Genome Gazetteer P35-65
    gazetteer Metabolism 35 tRNA modification mitochondrial transport amino-acid metabolism other tRNA-transcription activities vesicular transport (Golgi network, etc.) nitrogen and sulphur metabolism mRNA synthesis peroxisomal transport nucleotide metabolism mRNA processing (splicing) vacuolar transport phosphate metabolism mRNA processing (5’-end, 3’-end processing extracellular transport carbohydrate metabolism and mRNA degradation) cellular import lipid, fatty-acid and sterol metabolism other mRNA-transcription activities other intracellular-transport activities biosynthesis of vitamins, cofactors and RNA transport prosthetic groups other transcription activities Cellular organization and biogenesis 54 ionic homeostasis organization and biogenesis of cell wall and Protein synthesis 48 plasma membrane Energy 40 ribosomal proteins organization and biogenesis of glycolysis translation (initiation,elongation and cytoskeleton gluconeogenesis termination) organization and biogenesis of endoplasmic pentose-phosphate pathway translational control reticulum and Golgi tricarboxylic-acid pathway tRNA synthetases organization and biogenesis of chromosome respiration other protein-synthesis activities structure fermentation mitochondrial organization and biogenesis metabolism of energy reserves (glycogen Protein destination 49 peroxisomal organization and biogenesis and trehalose) protein folding and stabilization endosomal organization and biogenesis other energy-generation activities protein targeting, sorting and translocation vacuolar and lysosomal
    [Show full text]
  • Patient-Based Cross-Platform Comparison of Oligonucleotide Microarray Expression Profiles
    Laboratory Investigation (2005) 85, 1024–1039 & 2005 USCAP, Inc All rights reserved 0023-6837/05 $30.00 www.laboratoryinvestigation.org Patient-based cross-platform comparison of oligonucleotide microarray expression profiles Joerg Schlingemann1,*, Negusse Habtemichael2,*, Carina Ittrich3, Grischa Toedt1, Heidi Kramer1, Markus Hambek4, Rainald Knecht4, Peter Lichter1, Roland Stauber2 and Meinhard Hahn1 1Division of Molecular Genetics, Deutsches Krebsforschungszentrum, Heidelberg, Germany; 2Chemotherapeutisches Forschungsinstitut Georg-Speyer-Haus, Frankfurt am Main, Germany; 3Central Unit Biostatistics, Deutsches Krebsforschungszentrum, Heidelberg, Germany and 4Department of Otorhinolaryngology, Universita¨tsklinik, Johann-Wolfgang-Goethe-Universita¨t Frankfurt, Frankfurt, Germany The comparison of gene expression measurements obtained with different technical approaches is of substantial interest in order to clarify whether interplatform differences may conceal biologically significant information. To address this concern, we analyzed gene expression in a set of head and neck squamous cell carcinoma patients, using both spotted oligonucleotide microarrays made from a large collection of 70-mer probes and commercial arrays produced by in situ synthesis of sets of multiple 25-mer oligonucleotides per gene. Expression measurements were compared for 4425 genes represented on both platforms, which revealed strong correlations between the corresponding data sets. Of note, a global tendency towards smaller absolute ratios was observed when
    [Show full text]
  • CDH12 Cadherin 12, Type 2 N-Cadherin 2 RPL5 Ribosomal
    5 6 6 5 . 4 2 1 1 1 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 A A A A A A A A A A A A A A A A A A A A C C C C C C C C C C C C C C C C C C C C R R R R R R R R R R R R R R R R R R R R B , B B B B B B B B B B B B B B B B B B B , 9 , , , , 4 , , 3 0 , , , , , , , , 6 2 , , 5 , 0 8 6 4 , 7 5 7 0 2 8 9 1 3 3 3 1 1 7 5 0 4 1 4 0 7 1 0 2 0 6 7 8 0 2 5 7 8 0 3 8 5 4 9 0 1 0 8 8 3 5 6 7 4 7 9 5 2 1 1 8 2 2 1 7 9 6 2 1 7 1 1 0 4 5 3 5 8 9 1 0 0 4 2 5 0 8 1 4 1 6 9 0 0 6 3 6 9 1 0 9 0 3 8 1 3 5 6 3 6 0 4 2 6 1 0 1 2 1 9 9 7 9 5 7 1 5 8 9 8 8 2 1 9 9 1 1 1 9 6 9 8 9 7 8 4 5 8 8 6 4 8 1 1 2 8 6 2 7 9 8 3 5 4 3 2 1 7 9 5 3 1 3 2 1 2 9 5 1 1 1 1 1 1 5 9 5 3 2 6 3 4 1 3 1 1 4 1 4 1 7 1 3 4 3 2 7 6 4 2 7 2 1 2 1 5 1 6 3 5 6 1 3 6 4 7 1 6 5 1 1 4 1 6 1 7 6 4 7 e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e e l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l l p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p p m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m m
    [Show full text]
  • Parallel Multi-Omics in High-Risk Subjects for the Identification Of
    biomolecules Article Parallel Multi-Omics in High-Risk Subjects for the Identification of Integrated Biomarker Signatures of Type 1 Diabetes Oscar Alcazar 1,†, Luis F. Hernandez 1,†, Ernesto S. Nakayasu 2 , Carrie D. Nicora 2, Charles Ansong 2, Michael J. Muehlbauer 3, James R. Bain 3 , Ciara J. Myer 4,5, Sanjoy K. Bhattacharya 4,5, Peter Buchwald 1,6,*,† and Midhat H. Abdulreda 1,4,7,8,*,† 1 Diabetes Research Institute, University of Miami Miller School of Medicine, Miami, FL 33136, USA; [email protected] (O.A.); [email protected] (L.F.H.) 2 Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA; [email protected] (E.S.N.); [email protected] (C.D.N.); [email protected] (C.A.) 3 Duke Molecular Physiology Institute, Duke University Medical Center, Durham, NC 27701, USA; [email protected] (M.J.M.); [email protected] (J.R.B.) 4 Department of Ophthalmology, University of Miami Miller School of Medicine, Miami, FL 33136, USA; [email protected] (C.J.M.); [email protected] (S.K.B.) 5 Miami Integrative Metabolomics Research Center, University of Miami Miller School of Medicine, Miami, FL 33136, USA 6 Department of Molecular and Cellular Pharmacology, University of Miami Miller School of Medicine, Miami, FL 33136, USA 7 Department of Surgery, University of Miami Miller School of Medicine, Miami, FL 33136, USA 8 Department of Microbiology and Immunology, University of Miami Miller School of Medicine, Citation: Alcazar, O.; Hernandez, Miami, FL 33136, USA L.F.; Nakayasu, E.S.; Nicora, C.D.; * Correspondence: [email protected] (P.B.); [email protected] (M.H.A.) Ansong, C.; Muehlbauer, M.J.; Bain, † These authors contributed equally.
    [Show full text]
  • Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
    Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase
    [Show full text]
  • University of Cincinnati
    UNIVERSITY OF CINCINNATI Date: 1-Oct-2010 I, Jason Matthew Puglise , hereby submit this original work as part of the requirements for the degree of: Doctor of Philosophy in Cell & Molecular Biology It is entitled: Roles of the Rac/Cdc42 effector proteins Pak and PIX in cytokinesis, ciliogenesis, and cyst formation in renal epithelial cells Student Signature: Jason Matthew Puglise This work and its defense approved by: Committee Chair: Robert Brackenbury, PhD Robert Brackenbury, PhD 11/1/2010 1,117 Roles of the Rac/Cdc42 effector proteins Pak and PIX in cytokinesis, ciliogenesis, and cyst formation in renal epithelial cells A dissertation submitted to the Graduate School of the University of Cincinnati in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate Program of Cancer and Cell Biology of the College of Medicine by Jason M. Puglise M.Sc., Wright State University 2005 Committee Chair: Robert Brackenbury, Ph.D. ii ABSTRACT Puglise, Jason M. Ph.D., Cancer and Cell Biology Program. University of Cincinnati, 2010. Roles of the Rac/Cdc42 effector proteins Pak and PIX in cytokinesis, ciliogenesis, and cyst formation in renal epithelial cells. The p21-activated kinase 1 (Pak1) is a putative Rac/Cdc42 effector molecule and a multifunctional enzyme implicated in a wide range of cellular and biological activities. Although well-established as a regulator of cytoskeletal and microtubule dynamics, Pak1 influences centrosome behavior and plays a part in the cell cycle. We examine the role Pak1 and its binding partner Pak1-interacting exchange factor (PIX) play in centrosome dynamics and in cell cycle events in renal epithelial cells.
    [Show full text]